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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G19210
Z-value: 1.53
Transcription factors associated with AT1G19210
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G19210
|
AT1G19210 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G19210 | arTal_v1_Chr1_-_6627688_6627688 | 0.09 | 7.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 2.67 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.24 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.00 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.77 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr1_-_5160179_5160179 Show fit | 1.62 |
AT1G14960.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.56 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.51 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 1.49 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.47 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr4_-_14002069_14002124 Show fit | 1.45 |
AT4G28250.2
AT4G28250.3 AT4G28250.4 AT4G28250.1 |
expansin B3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G19210
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.4 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 6.4 | GO:0071456 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.1 | 4.7 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 4.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 3.8 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.0 | 3.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 3.4 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 3.2 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.2 | 2.9 | GO:0046348 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.0 | 2.7 | GO:0043062 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 52.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 24.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 3.6 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 2.8 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 2.7 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 2.3 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.3 | 2.1 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.1 | 2.0 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 1.4 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.4 | 1.2 | GO:0009514 | glyoxysome(GO:0009514) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 6.0 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.2 | 4.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 3.9 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 3.4 | GO:0005179 | hormone activity(GO:0005179) |
| 0.4 | 3.3 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.4 | 3.1 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 2.9 | GO:0070001 | aspartic-type peptidase activity(GO:0070001) |
| 0.1 | 2.8 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 2.7 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.2 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.2 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.9 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.2 | 0.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.3 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
| 0.1 | 0.2 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.0 | 0.2 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.0 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |