Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT1G19040

Z-value: 0.97

Transcription factors associated with AT1G19040

Gene Symbol Gene ID Gene Info
AT1G19040
AT1G19040 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G19040arTal_v1_Chr1_+_6576077_65760770.165.8e-01Click!

Activity profile of AT1G19040 motif

Sorted Z-values of AT1G19040 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_-_10720843 1.34 AT1G30370.1
DLAH
alpha/beta-Hydrolases superfamily protein
Chr1_-_27265806 1.27 AT1G72430.1
AT1G72430
SAUR-like auxin-responsive protein family
Chr5_-_3517035 1.07 AT5G11070.1
AT5G11070
hypothetical protein
Chr3_-_15953346 1.07 AT3G44260.1
CAF1a
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr2_+_3618058 1.04 AT2G08986.1
AT2G08986
hypothetical protein
Chr5_+_3206140 0.99 AT5G10210.1
AT5G10210
nitric oxide synthase-interacting protein
Chr1_+_5596633 0.95 AT1G16370.1
OCT6
organic cation/carnitine transporter 6
Chr4_+_4886962 0.95 AT4G08040.1
ACS11
1-aminocyclopropane-1-carboxylate synthase 11
Chr1_+_24637196 0.92 AT1G66160.2
AT1G66160.1
CMPG1
CYS, MET, PRO, and GLY protein 1
Chr1_-_20015038 0.91 AT1G53625.1
AT1G53625
hypothetical protein
Chr2_-_7919345 0.90 AT2G18193.1
AT2G18193
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_7494234 0.88 AT4G12735.1
AT4G12735
hypothetical protein
Chr4_-_10828618 0.80 AT4G19980.1
AT4G19980
hypothetical protein
Chr5_-_1722910 0.76 AT5G05730.2
AT5G05730.1
ASA1
anthranilate synthase alpha subunit 1
Chr5_-_8856758 0.75 AT5G25440.1
AT5G25440.2
AT5G25440
Protein kinase superfamily protein
Chr5_+_427642 0.74 AT5G02170.1
AT5G02170.2
AT5G02170
Transmembrane amino acid transporter family protein
Chr3_+_18929526 0.73 AT3G50930.1
BCS1
cytochrome BC1 synthesi
Chr4_+_12916926 0.73 AT4G25200.1
HSP23.6-MITO
mitochondrion-localized small heat shock protein 23.6
Chr4_+_14920376 0.73 AT4G30530.1
GGP1
Class I glutamine amidotransferase-like superfamily protein
Chr2_-_11284211 0.73 AT2G26530.2
AT2G26530.1
AR781
AR781, pheromone receptor-like protein (DUF1645)
Chr3_+_9685932 0.71 AT3G26470.1
AT3G26470
Powdery mildew resistance protein, RPW8 domain-containing protein
Chr3_-_21931570 0.71 AT3G59340.1
AT3G59340.3
AT3G59340.4
AT3G59340
solute carrier family 35 protein (DUF914)
Chr4_-_12170055 0.70 AT4G23260.1
AT4G23260.2
CRK18
cysteine-rich RLK (RECEPTOR-like protein kinase) 18
Chr1_+_10537648 0.69 AT1G30040.2
GA2OX2
gibberellin 2-oxidase
Chr4_+_18519599 0.68 AT4G39940.1
AKN2
APS-kinase 2
Chr2_-_6867004 0.67 AT2G15760.1
AT2G15760
calmodulin-binding protein (DUF1645)
Chr4_-_3950602 0.67 AT4G06700.1
AT4G06700

Chr1_+_10537457 0.66 AT1G30040.1
GA2OX2
gibberellin 2-oxidase
Chr2_+_9792166 0.65 AT2G23000.2
AT2G23000.1
scpl10
serine carboxypeptidase-like 10
Chr1_-_9140439 0.63 AT1G26410.1
AT1G26410
FAD-binding Berberine family protein
Chr2_-_1339468 0.61 AT2G04050.1
AT2G04050
MATE efflux family protein
Chr1_-_12984640 0.60 AT1G35350.2
AT1G35350.1
AT1G35350
EXS (ERD1/XPR1/SYG1) family protein
Chr2_+_16782366 0.60 AT2G40180.1
PP2C5
phosphatase 2C5
Chr1_-_4034155 0.59 AT1G11940.1
AT1G11940.2
AT1G11940
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr2_-_15421866 0.57 AT2G36790.1
UGT73C6
UDP-glucosyl transferase 73C6
Chr3_+_512220 0.57 AT3G02480.1
AT3G02480
Late embryogenesis abundant protein (LEA) family protein
Chr2_+_13916440 0.56 AT2G32800.1
AP4.3A
protein kinase family protein
Chr4_-_437591 0.56 AT4G01010.1
AT4G01010.2
CNGC13
cyclic nucleotide-gated channel 13
Chr3_+_20005616 0.56 AT3G54020.1
AtIPCS1
Inositol phosphorylceramide synthase 1
Chr2_-_11968712 0.55 AT2G28085.1
AT2G28085
SAUR-like auxin-responsive protein family
Chr1_+_25464712 0.53 AT1G67900.4
AT1G67900.3
AT1G67900.5
AT1G67900
Phototropic-responsive NPH3 family protein
Chr5_-_26246960 0.52 AT5G65660.1
AT5G65660
hydroxyproline-rich glycoprotein family protein
Chr3_+_22804998 0.52 AT3G61630.1
CRF6
cytokinin response factor 6
Chr2_+_7406911 0.51 AT2G17040.1
NAC036
NAC domain containing protein 36
Chr1_+_25464376 0.51 AT1G67900.2
AT1G67900.1
AT1G67900
Phototropic-responsive NPH3 family protein
Chr1_+_25466935 0.51 AT1G67900.6
AT1G67900
Phototropic-responsive NPH3 family protein
Chr5_+_14887429 0.50 AT5G37490.1
AT5G37490
ARM repeat superfamily protein
Chr4_-_11397726 0.50 AT4G21390.1
AT4G21390.2
B120
S-locus lectin protein kinase family protein
Chr3_-_1832190 0.49 AT3G06070.1
AT3G06070
hypothetical protein
Chr4_-_17289728 0.49 AT4G36670.1
PMT6
Major facilitator superfamily protein
Chr4_+_8688250 0.49 AT4G15233.1
AT4G15233.7
AT4G15233.8
AT4G15233.2
ABCG42
ABC-2 and Plant PDR ABC-type transporter family protein
Chr3_-_8013941 0.48 AT3G22640.1
PAP85
cupin family protein
Chr3_-_314120 0.47 AT3G01900.1
CYP94B2
cytochrome P450, family 94, subfamily B, polypeptide 2
Chr5_-_17629363 0.46 AT5G43850.1
ARD4
RmlC-like cupins superfamily protein
Chr2_-_3379885 0.46 AT2G07704.1
AT2G07704

Chr3_-_8890927 0.46 AT3G24460.1
AT3G24460
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr1_+_12964986 0.46 AT1G35330.1
AT1G35330
RING/U-box superfamily protein
Chr3_+_6045002 0.46 AT3G17690.3
AT3G17690.2
AT3G17690.1
CNGC19
cyclic nucleotide gated channel 19
Chr3_-_6509343 0.45 AT3G18870.1
AT3G18870
Mitochondrial transcription termination factor family protein
Chr4_-_12471261 0.45 AT4G24015.1
AT4G24015
RING/U-box superfamily protein
Chr3_-_20418910 0.45 AT3G55090.1
ABCG16
ABC-2 type transporter family protein
Chr4_-_8283263 0.45 AT4G14370.1
AT4G14370.3
AT4G14370.2
AT4G14370
Disease resistance protein (TIR-NBS-LRR class) family
Chr4_+_12539656 0.45 AT4G24160.1
AT4G24160.2
AT4G24160
alpha/beta-Hydrolases superfamily protein
Chr2_+_16630411 0.44 AT2G39850.1
AT2G39850
Subtilisin-like serine endopeptidase family protein
Chr3_+_8581446 0.44 AT3G23800.1
SBP3
selenium-binding protein 3
Chr4_+_8687354 0.43 AT4G15233.3
AT4G15233.4
ABCG42
ABC-2 and Plant PDR ABC-type transporter family protein
Chr3_-_21931391 0.43 AT3G59340.2
AT3G59340
solute carrier family 35 protein (DUF914)
Chr5_+_8752684 0.43 AT5G25260.1
AT5G25260
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr2_-_7915872 0.42 AT2G18190.1
AT2G18190
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_7978810 0.42 AT1G22570.1
AT1G22570
Major facilitator superfamily protein
Chr4_-_8669470 0.42 AT4G15210.4
AT4G15210.2
AT4G15210.1
AT4G15210.3
BAM5
beta-amylase 5
Chr4_-_15688811 0.41 AT4G32510.1
AT4G32510
HCO3- transporter family
Chr4_-_15689293 0.41 AT4G32510.2
AT4G32510
HCO3- transporter family
Chr5_-_2079005 0.41 AT5G06720.1
PA2
peroxidase 2
Chr1_-_27388534 0.40 AT1G72760.2
AT1G72760.3
AT1G72760
Protein kinase superfamily protein
Chr3_-_23178294 0.40 AT3G62670.1
RR20
two-component response regulator
Chr4_+_8687981 0.40 AT4G15233.6
ABCG42
ABC-2 and Plant PDR ABC-type transporter family protein
Chr4_+_8687820 0.40 AT4G15233.5
ABCG42
ABC-2 and Plant PDR ABC-type transporter family protein
Chr1_-_7978447 0.40 AT1G22570.2
AT1G22570
Major facilitator superfamily protein
Chr3_-_10590685 0.40 AT3G28340.1
GATL10
galacturonosyltransferase-like 10
Chr2_-_10317353 0.40 AT2G24255.1
AT2G24255
LOW protein: F-box/kelch-repeat protein
Chr3_+_8581890 0.39 AT3G23800.2
SBP3
selenium-binding protein 3
Chr1_+_24970523 0.39 AT1G66930.1
AT1G66930.3
AT1G66930
Protein kinase superfamily protein
Chr1_+_27341021 0.38 AT1G72620.1
AT1G72620
alpha/beta-Hydrolases superfamily protein
Chr4_+_16438469 0.38 AT4G34380.1
AT4G34380
Transducin/WD40 repeat-like superfamily protein
Chr2_-_15884013 0.38 AT2G37950.1
AT2G37950
RING/FYVE/PHD zinc finger superfamily protein
Chr4_-_9744860 0.38 AT4G17470.4
AT4G17470.2
AT4G17470.1
AT4G17470
alpha/beta-Hydrolases superfamily protein
Chr2_-_12181012 0.38 AT2G28490.1
AT2G28490
RmlC-like cupins superfamily protein
Chr4_+_7004265 0.38 AT4G11570.2
AT4G11570.1
AT4G11570
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_4147962 0.38 AT1G12230.2
AT1G12230.1
AT1G12230
Aldolase superfamily protein
Chr4_-_13975919 0.37 AT4G28140.1
AT4G28140
Integrase-type DNA-binding superfamily protein
Chr3_+_18514266 0.36 AT3G49940.1
LBD38
LOB domain-containing protein 38
Chr4_+_17113872 0.36 AT4G36170.1
AT4G36170
hypothetical protein
Chr3_-_20895634 0.36 AT3G56350.1
AT3G56350
Iron/manganese superoxide dismutase family protein
Chr2_-_12510552 0.36 AT2G29110.1
AT2G29110.2
GLR2.8
glutamate receptor 2.8
Chr5_+_3839316 0.36 AT5G11920.3
AT5G11920.1
AT5G11920.2
cwINV6
6-&1-fructan exohydrolase
Chr3_-_19643276 0.35 AT3G52970.1
AT3G52970.2
CYP76G1
cytochrome P450, family 76, subfamily G, polypeptide 1
Chr3_+_8242256 0.35 AT3G23130.1
SUP
C2H2 and C2HC zinc fingers superfamily protein
Chr3_-_9710100 0.35 AT3G26500.1
PIRL2
plant intracellular ras group-related LRR 2
Chr1_-_8016150 0.35 AT1G22650.2
AT1G22650.1
A/N-InvD
Plant neutral invertase family protein
Chr4_-_10740620 0.35 AT4G19740.1
AT4G19740
Glycosyl hydrolase superfamily protein
Chr3_+_10796695 0.35 AT3G28770.1
AT3G28770.2
AT3G28770.3
AT3G28770
transmembrane protein, putative (DUF1216)
Chr5_-_17650375 0.35 AT5G43890.1
YUC5
Flavin-binding monooxygenase family protein
Chr3_-_2306615 0.34 AT3G07250.1
AT3G07250
RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein
Chr3_+_9049090 0.34 AT3G24780.1
AT3G24780
Uncharacterized conserved protein UCP015417, vWA
Chr5_-_2195883 0.34 AT5G07060.1
AT5G07060.2
MAC5C
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
Chr1_-_22712210 0.34 AT1G61560.4
AT1G61560.3
AT1G61560.2
AT1G61560.9
AT1G61560.10
AT1G61560.8
AT1G61560.5
AT1G61560.1
AT1G61560.6
AT1G61560.7
MLO6
Seven transmembrane MLO family protein
Chr1_+_29214220 0.34 AT1G77730.1
AT1G77730
Pleckstrin homology (PH) domain superfamily protein
Chr5_-_22383392 0.33 AT5G55150.1
AT5G55150
F-box SKIP23-like protein (DUF295)
Chr1_+_1749478 0.33 AT1G05820.1
AT1G05820.3
AT1G05820.2
SPPL5
SIGNAL PEPTIDE PEPTIDASE-LIKE 5
Chr2_-_16852068 0.33 AT2G40350.1
AT2G40350
Integrase-type DNA-binding superfamily protein
Chr3_-_6418504 0.33 AT3G18650.1
AGL103
AGAMOUS-like 103
Chr3_-_5066745 0.33 AT3G15040.1
AT3G15040
senescence regulator (Protein of unknown function, DUF584)
Chr5_+_16733663 0.33 AT5G41800.1
AT5G41800
Transmembrane amino acid transporter family protein
Chr2_-_17992047 0.33 AT2G43290.1
MSS3
Calcium-binding EF-hand family protein
Chr4_-_8666050 0.33 AT4G15200.3
AT4G15200.2
FH3
formin 3
Chr5_-_1293723 0.32 AT5G04530.1
KCS19
3-ketoacyl-CoA synthase 19
Chr3_+_19856870 0.32 AT3G53550.1
AT3G53550
FBD-like domain family protein
Chr3_-_16837792 0.32 AT3G45810.1
AT3G45810
ferric reductase-like transmembrane component family protein
Chr3_+_13581147 0.32 AT3G33055.1
AT3G33055

Chr2_-_12504912 0.32 AT2G29100.1
AT2G29100.2
GLR2.9
glutamate receptor 2.9
Chr1_+_24969937 0.32 AT1G66930.2
AT1G66930
Protein kinase superfamily protein
Chr5_+_3502092 0.31 AT5G11050.1
MYB64
myb domain protein 64
Chr5_+_4908651 0.31 AT5G15140.1
AT5G15140
Galactose mutarotase-like superfamily protein
Chr1_+_8699650 0.31 AT1G24540.1
CYP86C1
cytochrome P450, family 86, subfamily C, polypeptide 1
Chr4_+_6971401 0.31 AT4G11480.4
AT4G11480.2
AT4G11480.3
AT4G11480.1
CRK32
cysteine-rich RLK (RECEPTOR-like protein kinase) 32
Chr5_+_4757856 0.31 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
Chr1_-_27388274 0.31 AT1G72760.1
AT1G72760
Protein kinase superfamily protein
Chr5_+_4758921 0.31 AT5G14740.9
CA2
carbonic anhydrase 2
Chr2_+_18286321 0.31 AT2G44230.1
AT2G44230
hypothetical protein (DUF946)
Chr4_-_6976014 0.31 AT4G11485.1
LCR11
low-molecular-weight cysteine-rich 11
Chr3_-_21575369 0.31 AT3G58260.1
AT3G58260
TRAF-like family protein
Chr4_+_10021786 0.31 AT4G18050.2
ABCB9
P-glycoprotein 9
Chr1_+_24978121 0.30 AT1G66950.1
ABCG39
pleiotropic drug resistance 11
Chr4_-_8665759 0.30 AT4G15200.1
AT4G15200.4
FH3
formin 3
Chr1_-_3693572 0.30 AT1G11070.5
AT1G11070.1
AT1G11070
hydroxyproline-rich glycoprotein family protein
Chr1_-_7230240 0.30 AT1G20800.1
AT1G20800
F-box/associated interaction domain protein
Chr4_+_10022205 0.30 AT4G18050.1
ABCB9
P-glycoprotein 9
Chr2_-_12902815 0.30 AT2G30240.1
ATCHX13
Cation/hydrogen exchanger family protein
Chr1_+_20757767 0.30 AT1G55570.1
sks12
SKU5 similar 12
Chr5_+_9584092 0.30 AT5G27230.1
AT5G27230
Frigida-like protein
Chr3_+_22535676 0.30 AT3G60960.1
AT3G60960.3
AT3G60960.2
AT3G60960
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_2078613 0.30 AT3G06640.2
AT3G06640
PAS domain-containing protein tyrosine kinase family protein
Chr1_+_11655156 0.29 AT1G32320.1
MKK10
MAP kinase kinase 10
Chr1_+_2137871 0.29 AT1G06970.1
CHX14
cation/hydrogen exchanger 14
Chr3_-_5655670 0.29 AT3G16600.1
AT3G16600
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
Chr5_+_15501126 0.29 AT5G38710.1
AT5G38710.2
AT5G38710
Methylenetetrahydrofolate reductase family protein
Chr3_-_1785495 0.29 AT3G05960.1
STP6
sugar transporter 6
Chr3_+_19945571 0.28 AT3G53840.1
AT3G53840
Protein kinase superfamily protein
Chr3_-_21834514 0.28 AT3G59070.1
AT3G59070
Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein
Chr3_+_3580895 0.28 AT3G11405.1
AT3G11405
hypothetical protein
Chr1_-_21553266 0.28 AT1G58200.2
MSL3
MSCS-like 3
Chr2_-_3312651 0.28 AT2G07687.1
AT2G07687
Cytochrome c oxidase, subunit III
Chr4_-_13714797 0.28 AT4G27420.1
ABCG9
ABC-2 type transporter family protein
Chr3_-_22614002 0.28 AT3G61111.2
AT3G61111.1
AT3G61111
Zinc-binding ribosomal protein family protein
Chr4_+_2693680 0.28 AT4G05260.1
AT4G05260
Ubiquitin-like superfamily protein
Chr5_+_23763945 0.28 AT5G58850.1
MYB119
myb domain protein 119
Chr4_+_16829326 0.28 AT4G35390.1
AGF1
AT-hook protein of GA feedback 1
Chr3_+_7406326 0.28 AT3G21120.1
AT3G21120
F-box and associated interaction domains-containing protein
Chr1_-_21553085 0.28 AT1G58200.1
MSL3
MSCS-like 3
Chr2_+_14364931 0.28 AT2G34000.1
AT2G34000
RING/U-box superfamily protein
Chr1_+_5817567 0.27 AT1G17010.1
AT1G17010
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_3694200 0.27 AT1G11070.4
AT1G11070.2
AT1G11070.3
AT1G11070
hydroxyproline-rich glycoprotein family protein
Chr5_-_23635037 0.27 AT5G58460.1
CHX25
cation/H+ exchanger 25
Chr3_-_2078317 0.27 AT3G06640.3
AT3G06640.1
AT3G06640
PAS domain-containing protein tyrosine kinase family protein
Chr1_+_20481648 0.27 AT1G54940.1
PGSIP4
plant glycogenin-like starch initiation protein 4
Chr5_+_25902533 0.27 AT5G64790.1
AT5G64790
O-Glycosyl hydrolases family 17 protein
Chr1_-_24668850 0.27 AT1G66210.1
AT1G66210
Subtilisin-like serine endopeptidase family protein
Chr2_-_7288945 0.27 AT2G16810.1
AT2G16810
F-box and associated interaction domains-containing protein
Chr1_+_22031343 0.27 AT1G59860.1
AT1G59860
HSP20-like chaperones superfamily protein
Chr1_+_707485 0.27 AT1G03050.1
AT1G03050
ENTH/ANTH/VHS superfamily protein
Chr5_-_17095801 0.27 AT5G42645.1
AT5G42645

Chr2_+_13886794 0.27 AT2G32740.1
GT13
galactosyltransferase 13
Chr1_-_7742106 0.27 AT1G21990.1
AT1G21990
F-box/RNI-like/FBD-like domains-containing protein
Chr2_-_14394858 0.27 AT2G34080.1
AT2G34080
Cysteine proteinases superfamily protein
Chr4_+_642714 0.27 AT4G01510.2
AT4G01510.1
AT4G01510.3
AT4G01510.4
AT4G01510.6
AT4G01510.7
AT4G01510.5
ARV2
Arv1-like protein
Chr3_+_10722394 0.27 AT3G28600.2
AT3G28600.1
AT3G28600
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_11136423 0.27 AT4G20790.1
AT4G20790
Leucine-rich repeat protein kinase family protein
Chr4_+_12072760 0.26 AT4G23030.1
AT4G23030
MATE efflux family protein
Chr2_-_8339307 0.26 AT2G19210.1
AT2G19210
Leucine-rich repeat transmembrane protein kinase protein
Chr1_+_26204805 0.26 AT1G69680.1
AT1G69680
ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
Chr4_-_9881455 0.26 AT4G17780.1
AT4G17780
F-box and associated interaction domains-containing protein
Chr1_+_29121226 0.26 AT1G77500.1
AT1G77500
DUF630 family protein, putative (DUF630 and DUF632)
Chr1_-_25007647 0.26 AT1G67000.1
AT1G67000
Protein kinase superfamily protein
Chr1_-_12957090 0.26 AT1G35310.1
MLP168
MLP-like protein 168
Chr4_-_9744545 0.26 AT4G17470.3
AT4G17470
alpha/beta-Hydrolases superfamily protein
Chr2_+_15379660 0.26 AT2G36690.1
AT2G36690
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_+_7926728 0.26 AT3G22400.1
LOX5
PLAT/LH2 domain-containing lipoxygenase family protein
Chr3_+_8565494 0.26 AT3G23770.1
AT3G23770
O-Glycosyl hydrolases family 17 protein
Chr1_-_29711421 0.26 AT1G78980.1
SRF5
STRUBBELIG-receptor family 5
Chr1_-_2312385 0.25 AT1G07520.3
AT1G07520
GRAS family transcription factor
Chr5_+_7002453 0.25 AT5G20690.1
PRK6
Leucine-rich repeat protein kinase family protein
Chr4_-_8278810 0.25 AT4G14368.2
AT4G14368.1
AT4G14368.4
AT4G14368.3
AT4G14368
Regulator of chromosome condensation (RCC1) family protein
Chr2_-_7653219 0.25 AT2G17590.1
AT2G17590
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_5466246 0.25 AT3G16130.1
ROPGEF13
RHO guanyl-nucleotide exchange factor 13
Chr1_-_30284319 0.25 AT1G80540.2
AT1G80540.1
AT1G80540.3
AT1G80540
envelope glycoprotein B
Chr3_-_2329926 0.24 AT3G07310.2
AT3G07310.1
AT3G07310
phosphoserine aminotransferase, putative (DUF760)
Chr4_+_10890983 0.24 AT4G20160.1
AT4G20160.3
AT4G20160
golgin family A protein
Chr2_-_13800099 0.24 AT2G32510.1
MAPKKK17
mitogen-activated protein kinase kinase kinase 17
Chr2_-_12729528 0.24 AT2G29820.1
AT2G29820
Galactose oxidase/kelch repeat superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G19040

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.3 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.2 0.6 GO:0099636 cytoplasmic streaming(GO:0099636)
0.2 1.1 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.1 0.4 GO:0055089 fatty acid homeostasis(GO:0055089)
0.1 0.7 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.1 0.4 GO:0002215 defense response to nematode(GO:0002215)
0.1 0.5 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.3 GO:0042908 xenobiotic transport(GO:0042908)
0.1 0.2 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.1 0.5 GO:0019509 L-methionine biosynthetic process from methylthioadenosine(GO:0019509) amino acid salvage(GO:0043102) L-methionine salvage(GO:0071267)
0.1 0.6 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.1 0.7 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.1 0.5 GO:0033619 membrane protein proteolysis(GO:0033619)
0.1 0.8 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.3 GO:0043406 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.0 0.4 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.0 0.3 GO:1901656 glycoside transport(GO:1901656)
0.0 0.9 GO:0080027 response to herbivore(GO:0080027)
0.0 0.2 GO:0070509 calcium ion import(GO:0070509)
0.0 0.2 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.8 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.0 0.6 GO:0015976 carbon utilization(GO:0015976)
0.0 0.2 GO:0046208 spermine catabolic process(GO:0046208)
0.0 0.6 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.3 GO:2000068 regulation of defense response to insect(GO:2000068)
0.0 0.2 GO:0036473 cell death in response to oxidative stress(GO:0036473) programmed cell death in response to reactive oxygen species(GO:0097468)
0.0 0.6 GO:0010440 stomatal lineage progression(GO:0010440)
0.0 0.2 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.8 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.6 GO:0051553 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.0 0.8 GO:0071230 cellular response to amino acid stimulus(GO:0071230)
0.0 1.1 GO:0010214 seed coat development(GO:0010214)
0.0 0.1 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.0 0.5 GO:1901071 glucosamine-containing compound metabolic process(GO:1901071)
0.0 0.4 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.1 GO:0042550 photosystem I stabilization(GO:0042550)
0.0 0.2 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.1 GO:1990110 callus formation(GO:1990110)
0.0 0.1 GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process(GO:0080088)
0.0 0.6 GO:0010227 floral organ abscission(GO:0010227)
0.0 1.6 GO:0006885 regulation of pH(GO:0006885)
0.0 0.3 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 0.4 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.4 GO:0010093 specification of floral organ identity(GO:0010093)
0.0 0.1 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.6 GO:0009851 auxin biosynthetic process(GO:0009851)
0.0 0.2 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.4 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.1 GO:0043570 maintenance of DNA repeat elements(GO:0043570)
0.0 0.2 GO:0010310 regulation of hydrogen peroxide metabolic process(GO:0010310)
0.0 0.2 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.5 GO:0002237 response to molecule of bacterial origin(GO:0002237)
0.0 0.5 GO:1900673 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 0.2 GO:0023014 signal transduction by protein phosphorylation(GO:0023014)
0.0 0.5 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 1.9 GO:0010200 response to chitin(GO:0010200)
0.0 0.4 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.4 GO:0010927 pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029)
0.0 0.1 GO:0070129 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.0 0.1 GO:0042659 regulation of cell fate specification(GO:0042659)
0.0 0.1 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 0.7 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.1 0.3 GO:0070505 pollen coat(GO:0070505)
0.1 0.5 GO:0098576 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.3 GO:0071006 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.1 GO:0030093 chloroplast photosystem I(GO:0030093)
0.0 0.6 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.2 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.3 GO:0035838 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 0.7 GO:0005741 mitochondrial outer membrane(GO:0005741)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.2 0.6 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.2 0.7 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.2 1.3 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.2 0.8 GO:0008430 selenium binding(GO:0008430)
0.2 0.8 GO:0004049 anthranilate synthase activity(GO:0004049)
0.1 0.5 GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity(GO:0010309)
0.1 1.3 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.1 0.4 GO:0051669 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.1 0.3 GO:0000248 C-5 sterol desaturase activity(GO:0000248)
0.1 0.8 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.1 0.4 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.1 0.6 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.1 0.2 GO:0032131 alkylated DNA binding(GO:0032131)
0.1 0.6 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.1 0.8 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.2 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 0.5 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.8 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.6 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 0.4 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.0 0.4 GO:0016161 beta-amylase activity(GO:0016161)
0.0 1.5 GO:0005262 calcium channel activity(GO:0005262)
0.0 0.3 GO:0017070 U6 snRNA binding(GO:0017070)
0.0 0.2 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.4 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.4 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 1.1 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.4 GO:0008061 chitin binding(GO:0008061)
0.0 0.4 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.4 GO:0070628 proteasome binding(GO:0070628)
0.0 1.0 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.6 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.0 0.3 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.3 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.2 GO:0033743 peptide-methionine (R)-S-oxide reductase activity(GO:0033743)
0.0 0.2 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.6 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.3 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.1 GO:0010179 IAA-Ala conjugate hydrolase activity(GO:0010179)
0.0 0.3 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.2 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.0 0.1 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.3 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.0 0.3 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.1 GO:0097177 translation activator activity(GO:0008494) mitochondrial ribosome binding(GO:0097177)
0.0 0.4 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.1 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.2 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.2 GO:0004525 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.1 ST FAS SIGNALING PATHWAY Fas Signaling Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.0 0.1 REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK