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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G19040
Z-value: 0.97
Transcription factors associated with AT1G19040
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G19040
|
AT1G19040 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G19040 | arTal_v1_Chr1_+_6576077_6576077 | 0.16 | 5.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_10720843_10720843 Show fit | 1.34 |
AT1G30370.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr1_-_27265806_27265806 Show fit | 1.27 |
AT1G72430.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr5_-_3517035_3517035 Show fit | 1.07 |
AT5G11070.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_15953346_15953346 Show fit | 1.07 |
AT3G44260.1
|
Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 1.04 |
AT2G08986.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_3206140_3206140 Show fit | 0.99 |
AT5G10210.1
|
nitric oxide synthase-interacting protein |
|
| arTal_v1_Chr1_+_5596633_5596633 Show fit | 0.95 |
AT1G16370.1
|
organic cation/carnitine transporter 6 |
|
| arTal_v1_Chr4_+_4886962_4886962 Show fit | 0.95 |
AT4G08040.1
|
1-aminocyclopropane-1-carboxylate synthase 11 |
|
| arTal_v1_Chr1_+_24637196_24637196 Show fit | 0.92 |
AT1G66160.2
AT1G66160.1 |
CYS, MET, PRO, and GLY protein 1 |
|
| arTal_v1_Chr1_-_20015038_20015038 Show fit | 0.91 |
AT1G53625.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G19040
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 1.6 | GO:0006885 | regulation of pH(GO:0006885) |
| 0.2 | 1.3 | GO:0016103 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.2 | 1.1 | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289) |
| 0.0 | 1.1 | GO:0010214 | seed coat development(GO:0010214) |
| 0.0 | 0.9 | GO:0080027 | response to herbivore(GO:0080027) |
| 0.1 | 0.8 | GO:0015833 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
| 0.0 | 0.8 | GO:0010600 | regulation of auxin biosynthetic process(GO:0010600) |
| 0.0 | 0.8 | GO:0006817 | phosphate ion transport(GO:0006817) |
| 0.0 | 0.8 | GO:0071230 | cellular response to amino acid stimulus(GO:0071230) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 0.7 | GO:0032541 | cortical endoplasmic reticulum(GO:0032541) |
| 0.0 | 0.7 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
| 0.0 | 0.6 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.5 | GO:0098576 | integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576) |
| 0.1 | 0.3 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.3 | GO:0071006 | U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012) |
| 0.0 | 0.3 | GO:0035838 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
| 0.0 | 0.2 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
| 0.0 | 0.1 | GO:0030093 | chloroplast photosystem I(GO:0030093) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.5 | GO:0005262 | calcium channel activity(GO:0005262) |
| 0.2 | 1.3 | GO:0052634 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.1 | 1.3 | GO:0008970 | phosphatidylcholine 1-acylhydrolase activity(GO:0008970) |
| 0.2 | 1.1 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
| 0.0 | 1.1 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.0 | 1.0 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.2 | 0.8 | GO:0008430 | selenium binding(GO:0008430) |
| 0.2 | 0.8 | GO:0004049 | anthranilate synthase activity(GO:0004049) |
| 0.1 | 0.8 | GO:0005452 | inorganic anion exchanger activity(GO:0005452) |
| 0.1 | 0.8 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.1 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |