GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G19000
|
AT1G19000 | Homeodomain-like superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT1G19000 | arTal_v1_Chr1_-_6562786_6562791 | 0.07 | 8.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_+_9829261_9829261 Show fit | 1.89 |
AT1G28135.1
|
hypothetical protein |
|
arTal_v1_Chr2_+_18347765_18347765 Show fit | 1.70 |
AT2G44460.2
|
beta glucosidase 28 |
|
arTal_v1_Chr2_+_18346306_18346306 Show fit | 1.66 |
AT2G44460.1
|
beta glucosidase 28 |
|
arTal_v1_Chr5_+_6566271_6566303 Show fit | 1.49 |
AT5G19470.1
AT5G19470.2 |
nudix hydrolase homolog 24 |
|
arTal_v1_Chr4_+_11150049_11150049 Show fit | 1.48 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
arTal_v1_Chr5_-_8181107_8181107 Show fit | 1.48 |
AT5G24155.2
AT5G24155.3 AT5G24155.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
arTal_v1_Chr2_+_12588191_12588197 Show fit | 1.46 |
AT2G29300.2
AT2G29300.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
arTal_v1_Chr5_-_19807853_19807853 Show fit | 1.38 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.37 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
arTal_v1_Chr2_-_1007186_1007186 Show fit | 1.34 |
AT2G03310.1
|
transmembrane protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.9 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
0.2 | 3.9 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
0.2 | 3.8 | GO:0015976 | carbon utilization(GO:0015976) |
0.5 | 3.7 | GO:0009061 | anaerobic respiration(GO:0009061) |
0.0 | 3.6 | GO:0010200 | response to chitin(GO:0010200) |
0.1 | 3.3 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
0.2 | 2.9 | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system(GO:0010244) |
0.2 | 2.7 | GO:0090056 | regulation of chlorophyll metabolic process(GO:0090056) |
0.1 | 2.7 | GO:0005983 | starch catabolic process(GO:0005983) |
0.1 | 2.6 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 4.2 | GO:0010319 | stromule(GO:0010319) |
0.0 | 3.1 | GO:0042651 | photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651) |
0.2 | 3.0 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
0.1 | 2.9 | GO:0010287 | plastoglobule(GO:0010287) |
0.6 | 1.9 | GO:0005652 | nuclear lamina(GO:0005652) |
0.2 | 1.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
0.1 | 1.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
0.1 | 1.4 | GO:0009508 | plastid chromosome(GO:0009508) |
0.0 | 1.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.1 | 3.6 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
0.4 | 3.5 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
0.2 | 3.2 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
0.1 | 2.8 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
0.1 | 2.8 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.2 | 2.3 | GO:2001070 | starch binding(GO:2001070) |
0.1 | 2.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.0 | 1.9 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
0.0 | 1.9 | GO:0043531 | ADP binding(GO:0043531) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 0.3 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.1 | 0.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.1 | 0.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 0.2 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 0.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.2 | 1.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 0.7 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.2 | 0.6 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.1 | 0.6 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 0.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.0 | 0.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.0 | 0.4 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.1 | 0.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |