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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G16490
Z-value: 1.29
Transcription factors associated with AT1G16490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G16490
|
AT1G16490 | myb domain protein 58 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB58 | arTal_v1_Chr1_-_5630476_5630476 | -0.53 | 4.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 1.70 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_16998925_16998925 Show fit | 1.61 |
AT5G42510.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr1_+_4604688_4604688 Show fit | 1.50 |
AT1G13420.1
|
sulfotransferase 4B |
|
| arTal_v1_Chr4_+_7439115_7439115 Show fit | 1.42 |
AT4G12550.1
|
Auxin-Induced in Root cultures 1 |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.35 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.34 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr5_-_3172701_3172701 Show fit | 1.34 |
AT5G10130.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.33 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 1.28 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_16431304_16431391 Show fit | 1.25 |
AT5G41040.1
AT5G41040.2 |
HXXXD-type acyl-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G16490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 6.4 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.3 | 3.3 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.0 | 2.7 | GO:0009698 | phenylpropanoid metabolic process(GO:0009698) |
| 0.2 | 2.2 | GO:0009423 | chorismate biosynthetic process(GO:0009423) |
| 0.5 | 2.1 | GO:0046498 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
| 0.4 | 2.1 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
| 0.4 | 2.0 | GO:0009807 | lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807) |
| 0.0 | 2.0 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.4 | 1.9 | GO:0046218 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.3 | 1.8 | GO:0046085 | adenosine metabolic process(GO:0046085) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 9.3 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 7.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 6.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 6.7 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 4.6 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.0 | 3.4 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 2.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 2.6 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 2.3 | GO:0048226 | Casparian strip(GO:0048226) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.5 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 4.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 3.6 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.5 | 2.6 | GO:0042085 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.0 | 2.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.7 | 2.1 | GO:0016802 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
| 0.5 | 2.1 | GO:0047334 | diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334) |
| 0.7 | 2.0 | GO:0047364 | desulfoglucosinolate sulfotransferase activity(GO:0047364) |
| 0.1 | 1.8 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 1.7 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.9 | PID P73PATHWAY | p73 transcription factor network |
| 0.4 | 1.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.5 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.1 | 0.2 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.4 | 1.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.9 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.3 | 0.8 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 0.4 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.0 | 0.1 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
| 0.0 | 0.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.0 | 0.1 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |