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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G14350
Z-value: 0.63
Transcription factors associated with AT1G14350
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G14350
|
AT1G14350 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FLP | arTal_v1_Chr1_+_4907887_4907917 | 0.35 | 2.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7992429_7992429 Show fit | 0.53 |
AT4G13770.1
|
cytochrome P450, family 83, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr1_-_17683629_17683719 Show fit | 0.47 |
AT1G47960.1
AT1G47960.2 |
cell wall / vacuolar inhibitor of fructosidase 1 |
|
| arTal_v1_Chr1_+_10918267_10918278 Show fit | 0.36 |
AT1G30760.2
AT1G30760.1 |
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_18661460_18661464 Show fit | 0.36 |
AT2G45250.1
AT2G45250.3 AT2G45250.2 |
integral membrane hemolysin-III-like protein |
|
| arTal_v1_Chr4_-_7153571_7153681 Show fit | 0.34 |
AT4G11900.10
AT4G11900.8 AT4G11900.9 AT4G11900.7 AT4G11900.6 AT4G11900.3 AT4G11900.5 AT4G11900.2 AT4G11900.4 AT4G11900.1 |
S-locus lectin protein kinase family protein |
|
| arTal_v1_Chr2_+_18498909_18499053 Show fit | 0.34 |
AT2G44850.2
AT2G44850.3 |
hypothetical protein |
|
| arTal_v1_Chr1_-_19336072_19336135 Show fit | 0.34 |
AT1G52000.2
AT1G52000.1 |
Mannose-binding lectin superfamily protein |
|
| arTal_v1_Chr3_+_10576961_10576961 Show fit | 0.34 |
AT3G28310.1
|
hypothetical protein (DUF677) |
|
| arTal_v1_Chr4_+_685670_685670 Show fit | 0.33 |
AT4G01580.1
|
AP2/B3-like transcriptional factor family protein |
|
| arTal_v1_Chr1_-_17898804_17898813 Show fit | 0.28 |
AT1G48420.3
AT1G48420.2 AT1G48420.1 |
D-cysteine desulfhydrase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G14350
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0090356 | negative regulation of auxin metabolic process(GO:0090356) |
| 0.0 | 0.5 | GO:0019758 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.1 | 0.3 | GO:0009093 | cysteine catabolic process(GO:0009093) |
| 0.0 | 0.3 | GO:0032957 | inositol trisphosphate metabolic process(GO:0032957) |
| 0.0 | 0.3 | GO:0045962 | positive regulation of development, heterochronic(GO:0045962) |
| 0.1 | 0.2 | GO:0001736 | establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729) |
| 0.0 | 0.2 | GO:0035279 | production of lsiRNA involved in RNA interference(GO:0010599) mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795) |
| 0.0 | 0.2 | GO:0016926 | protein desumoylation(GO:0016926) |
| 0.0 | 0.2 | GO:0018231 | peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231) |
| 0.0 | 0.2 | GO:0061572 | actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
| 0.0 | 0.2 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 0.2 | GO:0010445 | nuclear dicing body(GO:0010445) |
| 0.0 | 0.1 | GO:0000783 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) |
| 0.0 | 0.1 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) photosystem I(GO:0009522) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:0052659 | inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743) |
| 0.0 | 0.3 | GO:0019239 | deaminase activity(GO:0019239) |
| 0.0 | 0.2 | GO:0070138 | ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140) |
| 0.0 | 0.2 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.0 | 0.2 | GO:0019707 | protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707) |
| 0.0 | 0.2 | GO:0022839 | calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839) |
| 0.0 | 0.2 | GO:0003725 | double-stranded RNA binding(GO:0003725) |
| 0.0 | 0.1 | GO:0010521 | telomerase inhibitor activity(GO:0010521) |
| 0.0 | 0.1 | GO:0032131 | alkylated DNA binding(GO:0032131) |
| 0.0 | 0.1 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |