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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G14350

Z-value: 0.63

Transcription factors associated with AT1G14350

Gene Symbol Gene ID Gene Info
AT1G14350
AT1G14350 Duplicated homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
FLParTal_v1_Chr1_+_4907887_49079170.352.2e-01Click!

Activity profile of AT1G14350 motif

Sorted Z-values of AT1G14350 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_7992429 0.53 AT4G13770.1
CYP83A1
cytochrome P450, family 83, subfamily A, polypeptide 1
Chr1_-_17683629 0.47 AT1G47960.1
AT1G47960.2
C/VIF1
cell wall / vacuolar inhibitor of fructosidase 1
Chr1_+_10918267 0.36 AT1G30760.2
AT1G30760.1
AT1G30760
FAD-binding Berberine family protein
Chr2_+_18661460 0.36 AT2G45250.1
AT2G45250.3
AT2G45250.2
AT2G45250
integral membrane hemolysin-III-like protein
Chr4_-_7153571 0.34 AT4G11900.10
AT4G11900.8
AT4G11900.9
AT4G11900.7
AT4G11900.6
AT4G11900.3
AT4G11900.5
AT4G11900.2
AT4G11900.4
AT4G11900.1
AT4G11900
S-locus lectin protein kinase family protein
Chr2_+_18498909 0.34 AT2G44850.2
AT2G44850.3
AT2G44850
hypothetical protein
Chr1_-_19336072 0.34 AT1G52000.2
AT1G52000.1
AT1G52000
Mannose-binding lectin superfamily protein
Chr3_+_10576961 0.34 AT3G28310.1
AT3G28310
hypothetical protein (DUF677)
Chr4_+_685670 0.33 AT4G01580.1
AT4G01580
AP2/B3-like transcriptional factor family protein
Chr1_-_17898804 0.28 AT1G48420.3
AT1G48420.2
AT1G48420.1
D-CDES
D-cysteine desulfhydrase
Chr1_+_4197396 0.28 AT1G12340.1
AT1G12340
Cornichon family protein
Chr1_+_17686990 0.28 AT1G47970.1
AT1G47970
nucleolin
Chr3_-_4709176 0.27 AT3G14180.1
ASIL2
sequence-specific DNA binding transcription factor
Chr1_+_4095246 0.27 AT1G12100.1
AT1G12100
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_5764760 0.25 AT3G16870.1
GATA17
GATA transcription factor 17
Chr3_+_20870000 0.25 AT3G56270.1
AT3G56270
WEB family protein (DUF827)
Chr3_+_16569051 0.25 AT3G45230.1
AT3G45230
hydroxyproline-rich glycoprotein family protein
Chr5_-_17363678 0.24 AT5G43270.1
AT5G43270.3
SPL2
squamosa promoter binding protein-like 2
Chr4_+_12714624 0.23 AT4G24630.1
AT4G24630
DHHC-type zinc finger family protein
Chr2_+_18498672 0.23 AT2G44850.1
AT2G44850
hypothetical protein
Chr5_-_17363880 0.22 AT5G43270.2
SPL2
squamosa promoter binding protein-like 2
Chr3_-_2137012 0.21 AT3G06770.1
AT3G06770.5
AT3G06770
Pectin lyase-like superfamily protein
Chr1_+_12426700 0.21 AT1G34120.1
AT1G34120.4
AT1G34120.2
AT1G34120.3
IP5PI
inositol polyphosphate 5-phosphatase I
Chr3_-_2137280 0.21 AT3G06770.4
AT3G06770.3
AT3G06770
Pectin lyase-like superfamily protein
Chr1_-_17706460 0.21 AT1G48000.1
MYB112
myb domain protein 112
Chr3_+_16882182 0.20 AT3G45920.1
AT3G45920
Protein kinase superfamily protein
Chr4_+_15221843 0.20 AT4G31360.1
AT4G31360
selenium binding protein
Chr5_-_15713158 0.20 AT5G39240.1
AT5G39240
transcription factor UPBEAT-like protein
Chr1_-_21334727 0.20 AT1G57600.1
AT1G57600.2
AT1G57600.3
AT1G57600
MBOAT (membrane bound O-acyl transferase) family protein
Chr3_+_20189794 0.19 AT3G54540.1
AT3G54540.2
ABCF4
general control non-repressible 4
Chr4_-_1230164 0.19 AT4G02770.1
PSAD-1
photosystem I subunit D-1
Chr1_+_8117286 0.19 AT1G22930.1
AT1G22930
T-complex protein 11
Chr1_-_6703368 0.19 AT1G19390.1
AT1G19390
Wall-associated kinase family protein
Chr1_+_8117732 0.18 AT1G22930.2
AT1G22930
T-complex protein 11
Chr1_-_20979395 0.18 AT1G56090.1
AT1G56090.2
AT1G56090
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_21746354 0.18 AT1G58602.2
AT1G58602.1
AT1G58602
LRR and NB-ARC domains-containing disease resistance protein
Chr1_-_19851435 0.18 AT1G53230.2
TCP3
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Chr5_+_9596766 0.17 AT5G27240.1
AT5G27240
DNAJ heat shock N-terminal domain-containing protein
Chr1_+_21732566 0.17 AT1G58520.2
AT1G58520.4
AT1G58520.5
AT1G58520.1
AT1G58520.6
RXW8
GDSL-like lipase/acylhydrolase superfamily protein
Chr1_+_22208089 0.16 AT1G60220.1
ULP1D
UB-like protease 1D
Chr1_-_5962481 0.16 AT1G17400.1
AT1G17400.2
AT1G17400.3
AT1G17400
hypothetical protein
Chr2_-_977531 0.16 AT2G03240.1
AT2G03240
EXS (ERD1/XPR1/SYG1) family protein
Chr2_-_11284211 0.16 AT2G26530.2
AT2G26530.1
AR781
AR781, pheromone receptor-like protein (DUF1645)
Chr2_-_15137012 0.16 AT2G36050.1
OFP15
ovate family protein 15
Chr1_+_4788463 0.15 AT1G13980.2
AT1G13980.1
GN
sec7 domain-containing protein
Chr5_+_23663136 0.15 AT5G58540.3
AT5G58540.1
AT5G58540
Protein kinase superfamily protein
Chr2_+_1798155 0.15 AT2G05060.1
AT2G05060
Protein kinase superfamily protein
Chr5_+_23663363 0.15 AT5G58540.2
AT5G58540
Protein kinase superfamily protein
Chr1_-_22191543 0.15 AT1G60160.1
AT1G60160
Potassium transporter family protein
Chr1_-_3823088 0.15 AT1G11360.4
AT1G11360.1
AT1G11360.3
AT1G11360.2
AT1G11360
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr3_-_2137641 0.15 AT3G06770.2
AT3G06770
Pectin lyase-like superfamily protein
Chr5_+_9597307 0.15 AT5G27240.2
AT5G27240
DNAJ heat shock N-terminal domain-containing protein
Chr5_-_6072334 0.14 AT5G18340.1
AT5G18340
ARM repeat superfamily protein
Chr5_+_9597552 0.13 AT5G27240.3
AT5G27240
DNAJ heat shock N-terminal domain-containing protein
Chr3_-_17298207 0.13 AT3G46960.2
AT3G46960.3
AT3G46960.1
AT3G46960
RNA helicase, ATP-dependent, SK12/DOB1 protein
Chr4_-_8794433 0.13 AT4G15390.1
AT4G15390.2
AT4G15390
HXXXD-type acyl-transferase family protein
Chr1_+_12427475 0.13 AT1G34120.5
IP5PI
inositol polyphosphate 5-phosphatase I
Chr1_-_5898931 0.12 AT1G17240.2
RLP2
receptor like protein 2
Chr1_-_5898728 0.12 AT1G17240.1
RLP2
receptor like protein 2
Chr2_-_1800472 0.12 AT2G05070.1
LHCB2.2
photosystem II light harvesting complex protein 2.2
Chr2_+_505375 0.12 AT2G02070.1
AT2G02070.2
IDD5
indeterminate(ID)-domain 5
Chr5_+_4315759 0.11 AT5G13460.1
IQD11
IQ-domain 11
Chr1_-_11406809 0.11 AT1G31810.1
AFH14
Formin Homology 14
Chr1_-_9864779 0.11 AT1G28230.1
PUP1
purine permease 1
Chr1_-_19851725 0.11 AT1G53230.1
TCP3
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Chr1_-_11406017 0.11 AT1G31810.2
AFH14
Formin Homology 14
Chr1_+_12908848 0.10 AT1G35220.2
AT1G35220.3
AT1G35220.1
AT1G35220.4
AT1G35220
FAM91 carboxy-terminus protein
Chr1_+_11391199 0.10 AT1G31780.1
AT1G31780
oligomeric golgi complex subunit
Chr4_+_7156150 0.10 AT4G11910.1
AT4G11910
STAY-GREEN-like protein
Chr3_-_4824913 0.10 AT3G14430.1
AT3G14430
GRIP/coiled-coil protein
Chr2_+_14783254 0.10 AT2G35070.1
AT2G35070.2
AT2G35070
transmembrane protein
Chr1_+_23121 0.10 AT1G01040.1
DCL1
dicer-like 1
Chr1_-_22205336 0.10 AT1G60200.4
AT1G60200.2
AT1G60200.3
AT1G60200.1
AT1G60200
splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
Chr3_+_9769634 0.10 AT3G26600.2
AT3G26600.1
ARO4
armadillo repeat only 4
Chr5_-_26143876 0.09 AT5G65420.2
AT5G65420.3
AT5G65420.4
AT5G65420.1
CYCD4%3B1
CYCLIN D4;1
Chr4_-_5271148 0.09 AT4G08340.1
AT4G08340

Chr2_+_1890684 0.09 AT2G05210.2
AT2G05210.1
AT2G05210.3
AtPOT1a
Nucleic acid-binding, OB-fold-like protein
Chr4_-_7099855 0.09 AT4G11800.1
AT4G11800
Calcineurin-like metallo-phosphoesterase superfamily protein
Chr5_+_17367827 0.09 AT5G43280.1
AT5G43280.2
DCI1
delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1
Chr1_+_23416 0.09 AT1G01040.2
DCL1
dicer-like 1
Chr1_-_21334018 0.09 AT1G57600.4
AT1G57600
MBOAT (membrane bound O-acyl transferase) family protein
Chr1_+_21733493 0.09 AT1G58520.7
RXW8
GDSL-like lipase/acylhydrolase superfamily protein
Chr1_+_12909426 0.09 AT1G35220.5
AT1G35220.6
AT1G35220
FAM91 carboxy-terminus protein
Chr1_+_10654800 0.08 AT1G30270.1
AT1G30270.2
AT1G30270.3
CIPK23
CBL-interacting protein kinase 23
Chr2_+_6947096 0.08 AT2G15960.1
AT2G15960
stress-induced protein
Chr1_-_11282468 0.08 AT1G31530.1
AT1G31530
DNAse I-like superfamily protein
Chr5_-_2070566 0.08 AT5G06710.1
AT5G06710.2
HAT14
homeobox leucine zipper protein
Chr1_+_12366810 0.08 AT1G34020.2
AT1G34020.1
AT1G34020.3
AT1G34020
Nucleotide-sugar transporter family protein
Chr5_-_2070378 0.08 AT5G06710.3
AT5G06710.4
HAT14
homeobox leucine zipper protein
Chr2_+_15568926 0.08 AT2G37050.4
AT2G37050.3
AT2G37050.1
AT2G37050.2
AT2G37050
Leucine-rich repeat protein kinase family protein
Chr1_+_7285042 0.08 AT1G20920.5
AT1G20920.1
AT1G20920.3
AT1G20920.6
AT1G20920.4
AT1G20920.2
AT1G20920.7
AT1G20920
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_5854906 0.08 AT3G17170.1
RFC3
Translation elongation factor EF1B/ribosomal protein S6 family protein
Chr1_-_30249305 0.08 AT1G80460.2
AT1G80460.1
NHO1
Actin-like ATPase superfamily protein
Chr5_+_8584535 0.08 AT5G24920.1
GDU5
glutamine dumper 5
Chr2_+_13269889 0.08 AT2G31140.1
AT2G31140
Peptidase S24/S26A/S26B/S26C family protein
Chr4_-_18563981 0.07 AT4G40050.2
AT4G40050.1
AT4G40050
signal transducer, putative (DUF3550/UPF0682)
Chr1_+_6744353 0.07 AT1G19480.1
AT1G19480.2
AT1G19480
DNA glycosylase superfamily protein
Chr5_+_25181296 0.06 AT5G62690.1
TUB2
tubulin beta chain 2
Chr3_-_8013941 0.06 AT3G22640.1
PAP85
cupin family protein
Chr1_-_13036037 0.06 AT1G35440.1
CYCT1%3B1
cyclin T1;1
Chr1_+_5702153 0.06 AT1G16680.1
AT1G16680
Chaperone DnaJ-domain superfamily protein
Chr1_+_12910001 0.06 AT1G35220.7
AT1G35220
FAM91 carboxy-terminus protein
Chr1_+_22192758 0.05 AT1G60170.1
emb1220
pre-mRNA processing ribonucleoprotein binding region-containing protein
Chr1_-_8266048 0.05 AT1G23300.1
AT1G23300
MATE efflux family protein
Chr3_+_17278542 0.05 AT3G46910.1
AT3G46910
Cullin family protein
Chr2_-_1206249 0.05 AT2G03930.2
AT2G03930
hypothetical protein (DUF239)
Chr5_+_9562596 0.04 AT5G27160.1
AT5G27160

Chr5_-_8841775 0.04 AT5G25420.1
AT5G25420
Xanthine/uracil/vitamin C permease
Chr2_+_13508493 0.04 AT2G31760.1
ARI10
RING/U-box superfamily protein
Chr1_-_3590928 0.04 AT1G10760.1
AT1G10760.3
SEX1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr2_-_9849357 0.04 AT2G23140.5
AT2G23140.4
AT2G23140.2
AT2G23140.1
AT2G23140.3
PUB4
RING/U-box superfamily protein with ARM repeat domain-containing protein
Chr1_-_3590701 0.04 AT1G10760.2
SEX1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr1_-_18764367 0.04 AT1G50650.1
AT1G50650
Stigma-specific Stig1 family protein
Chr4_+_10398857 0.04 AT4G18980.1
AtS40-3
AtS40-3
Chr1_-_13714 0.03 AT1G01030.2
AT1G01030.1
NGA3
AP2/B3-like transcriptional factor family protein
Chr1_-_7034881 0.03 AT1G20320.1
AT1G20320
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_-_7152876 0.03 AT5G21060.3
AT5G21060.2
AT5G21060.1
AT5G21060
Glyceraldehyde-3-phosphate dehydrogenase-like family protein
Chr1_+_7725972 0.03 AT1G21960.1
AT1G21960
RING/U-box superfamily protein
Chr2_-_1037675 0.03 AT2G03430.1
AT2G03430
Ankyrin repeat family protein
Chr3_+_20671115 0.03 AT3G55700.1
AT3G55700
UDP-Glycosyltransferase superfamily protein
Chr1_+_16739192 0.03 AT1G44050.1
AT1G44050
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_14001416 0.03 AT5G35830.1
AT5G35830
Ankyrin repeat family protein
Chr1_+_761261 0.03 AT1G03160.3
AT1G03160.1
AT1G03160.2
AT1G03160.4
FZL
FZO-like protein
Chr5_+_14783436 0.03 AT5G37330.1
AT5G37330

Chr5_-_15575437 0.03 AT5G38900.2
AT5G38900
Thioredoxin superfamily protein
Chr2_-_18713211 0.02 AT2G45410.1
LBD19
LOB domain-containing protein 19
Chr4_+_1619563 0.02 AT4G03650.1
AT4G03650

Chr5_+_9189425 0.02 AT5G26240.1
AT5G26240.2
CLC-D
chloride channel D
Chr3_+_8096230 0.02 AT3G22870.1
AT3G22870
F-box and associated interaction domains-containing protein
Chr4_+_2697581 0.02 AT4G05280.1
AT4G05280

Chr4_-_6528330 0.02 AT4G10570.1
UBP9
ubiquitin-specific protease 9
Chr4_+_967372 0.02 AT4G02190.1
AT4G02190
Cysteine/Histidine-rich C1 domain family protein
Chr5_+_17409524 0.02 AT5G43360.1
PHT1%3B3
phosphate transporter 1;3
Chr4_+_5295756 0.02 AT4G08360.1
AT4G08360
KOW domain-containing protein
Chr1_-_8275350 0.02 AT1G23320.1
TAR1
tryptophan aminotransferase related 1
Chr2_+_9657339 0.02 AT2G22720.4
AT2G22720.5
AT2G22720.2
AT2G22720.6
AT2G22720.3
AT2G22720.1
AT2G22720
SPT2 chromatin protein
Chr3_-_20187585 0.01 AT3G54530.1
AT3G54530.2
AT3G54530.3
AT3G54530
hypothetical protein
Chr5_+_9343785 0.01 AT5G26650.1
AGL36
AGAMOUS-like 36
Chr1_-_18632039 0.01 AT1G50300.1
AT1G50300.2
TAF15
TBP-associated factor 15
Chr1_+_22452573 0.01 AT1G60980.1
GA20OX4
gibberellin 20-oxidase 4
Chr5_+_14690436 0.01 AT5G37140.1
AT5G37140
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_12978868 0.01 AT2G30460.4
AT2G30460.3
AT2G30460.5
AT2G30460.2
AT2G30460.1
AT2G30460
Nucleotide/sugar transporter family protein
Chr1_+_10531831 0.01 AT1G30030.1
AT1G30030

Chr2_-_12885768 0.01 AT2G30200.2
AT2G30200.1
EMB3147
EMBRYO DEFECTIVE 3147
Chr3_+_22373013 0.01 AT3G60530.1
GATA4
GATA transcription factor 4
Chr1_+_26782048 0.00 AT1G71010.1
FAB1C
FORMS APLOID AND BINUCLEATE CELLS 1C
Chr1_-_20684965 0.00 AT1G55400.1
AT1G55400

Chr5_-_9382331 0.00 AT5G26590.1
AT5G26590

Chr3_+_18071454 0.00 AT3G48750.1
CDC2
cell division control 2
Chr2_-_6728183 0.00 AT2G15420.1
AT2G15420
myosin heavy chain-like protein
Chr1_-_4782546 0.00 AT1G13970.1
AT1G13970
beta-hexosaminidase (DUF1336)
Chr2_+_567873 0.00 AT2G02190.1
AT2G02190

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G14350

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0009093 cysteine catabolic process(GO:0009093)
0.1 0.5 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.1 0.2 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.0 0.3 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.2 GO:0035279 production of lsiRNA involved in RNA interference(GO:0010599) mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.1 GO:0010184 cytokinin transport(GO:0010184)
0.0 0.3 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.1 GO:0032210 regulation of telomere maintenance via telomerase(GO:0032210) regulation of telomere maintenance via telomere lengthening(GO:1904356) negative regulation of DNA biosynthetic process(GO:2000279) positive regulation of DNA biosynthetic process(GO:2000573)
0.0 0.2 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.1 GO:1903428 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.0 0.2 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.1 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.1 GO:0019563 glycerol-3-phosphate metabolic process(GO:0006072) alditol catabolic process(GO:0019405) glycerol catabolic process(GO:0019563)
0.0 0.1 GO:0080143 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.0 0.5 GO:0019758 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 0.2 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.2 GO:0009538 photosystem I reaction center(GO:0009538)
0.0 0.1 GO:0000783 telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783)
0.0 0.2 GO:0010445 nuclear dicing body(GO:0010445)
0.0 0.1 GO:0030076 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) photosystem I(GO:0009522) light-harvesting complex(GO:0030076)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0052659 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.0 0.2 GO:0070138 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.0 0.1 GO:0010521 telomerase inhibitor activity(GO:0010521)
0.0 0.1 GO:0032131 alkylated DNA binding(GO:0032131)
0.0 0.3 GO:0019239 deaminase activity(GO:0019239)
0.0 0.2 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.2 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.2 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.0 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.0 0.1 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.0 0.2 GO:0003725 double-stranded RNA binding(GO:0003725)