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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G13450
Z-value: 0.68
Transcription factors associated with AT1G13450
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G13450
|
AT1G13450 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GT-1 | arTal_v1_Chr1_-_4615259_4615353 | -0.31 | 2.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_1520278_1520278 Show fit | 0.89 |
AT1G05240.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 0.75 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr1_-_9890875_9891015 Show fit | 0.62 |
AT1G28290.2
AT1G28290.1 |
arabinogalactan protein 31 |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 0.59 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
| arTal_v1_Chr1_-_18390496_18390523 Show fit | 0.57 |
AT1G49700.2
AT1G49700.1 AT1G49700.3 AT1G49700.4 |
Plant protein 1589 of unknown function |
|
| arTal_v1_Chr2_-_9266557_9266557 Show fit | 0.47 |
AT2G21660.1
|
cold, circadian rhythm, and rna binding 2 |
|
| arTal_v1_Chr2_-_9266393_9266393 Show fit | 0.46 |
AT2G21660.2
|
cold, circadian rhythm, and rna binding 2 |
|
| arTal_v1_Chr4_-_18275017_18275216 Show fit | 0.45 |
AT4G39260.4
AT4G39260.3 AT4G39260.2 AT4G39260.1 |
cold, circadian rhythm, and RNA binding 1 |
|
| arTal_v1_Chr5_+_1378954_1378954 Show fit | 0.39 |
AT5G04770.3
|
cationic amino acid transporter 6 |
|
| arTal_v1_Chr5_+_1378788_1378788 Show fit | 0.38 |
AT5G04770.2
|
cationic amino acid transporter 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G13450
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.2 | 0.7 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.0 | 0.6 | GO:0006560 | proline metabolic process(GO:0006560) |
| 0.0 | 0.6 | GO:0033238 | regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) |
| 0.0 | 0.4 | GO:0071585 | detoxification of cadmium ion(GO:0071585) |
| 0.1 | 0.3 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
| 0.1 | 0.3 | GO:1902475 | L-alpha-amino acid transmembrane transport(GO:1902475) |
| 0.1 | 0.3 | GO:0048464 | sepal development(GO:0048442) flower calyx development(GO:0048464) |
| 0.0 | 0.3 | GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287) |
| 0.1 | 0.2 | GO:0015717 | triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0034515 | proteasome storage granule(GO:0034515) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.1 | 0.7 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 0.6 | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645) |
| 0.0 | 0.5 | GO:0015086 | cadmium ion transmembrane transporter activity(GO:0015086) |
| 0.1 | 0.4 | GO:0047215 | indole-3-acetate beta-glucosyltransferase activity(GO:0047215) |
| 0.1 | 0.4 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.1 | 0.3 | GO:1901474 | L-ornithine transmembrane transporter activity(GO:0000064) azole transmembrane transporter activity(GO:1901474) |
| 0.1 | 0.3 | GO:0046409 | p-coumarate 3-hydroxylase activity(GO:0046409) |
| 0.1 | 0.2 | GO:0015119 | hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152) |
| 0.0 | 0.2 | GO:1902417 | (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |