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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G09540
Z-value: 1.30
Transcription factors associated with AT1G09540
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G09540
|
AT1G09540 | myb domain protein 61 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB61 | arTal_v1_Chr1_+_3086101_3086101 | -0.02 | 9.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.73 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 2.63 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 2.17 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 2.10 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 2.01 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.94 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_+_16770888_16770888 Show fit | 1.79 |
AT3G45680.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.68 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 1.64 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 1.59 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G09540
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.8 | GO:0010208 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.2 | 3.8 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.6 | 3.5 | GO:0043617 | cellular response to sucrose starvation(GO:0043617) |
| 0.5 | 2.7 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
| 0.1 | 2.6 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 2.6 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.2 | 2.0 | GO:0080144 | amino acid homeostasis(GO:0080144) |
| 0.2 | 1.9 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.1 | 1.9 | GO:0010227 | floral organ abscission(GO:0010227) |
| 0.1 | 1.8 | GO:0009094 | L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 30.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 13.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 2.5 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 1.9 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.7 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 1.3 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 1.1 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 1.1 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 3.8 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.7 | 3.5 | GO:0042085 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.4 | 3.1 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.3 | 2.9 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 2.2 | GO:0015081 | sodium ion transmembrane transporter activity(GO:0015081) |
| 0.1 | 2.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.2 | 2.0 | GO:0004096 | catalase activity(GO:0004096) |
| 0.2 | 2.0 | GO:0004784 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.3 | 1.0 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.2 | 0.7 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.2 | 0.6 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.0 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |