ISMARA results: AT1G09530

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G09530_AT5G61380

Z-value: 1.09

Transcription factors associated with AT1G09530_AT5G61380

Gene Symbol	Gene ID	Gene Info
AT1G09530 TAIR	AT1G09530	phytochrome interacting factor 3
AT5G61380 TAIR	AT5G61380	CCT motif -containing response regulator protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
TOC1	arTal_v1_Chr5_+_24674963_24674963	0.90	1.4e-05	Click!
PIF3	arTal_v1_Chr1_+_3076401_3076401	0.55	4.0e-02	Click!

Activity profile of AT1G09530_AT5G61380 motif

Sorted Z-values of AT1G09530_AT5G61380 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr1_+_3019639_3019639 Show fit	4.32	AT1G09350.1	GolS3 TAIR Show fit	galactinol synthase 3
arTal_v1_Chr1_+_3020221_3020221 Show fit	4.02	AT1G09350.2	GolS3 TAIR Show fit	galactinol synthase 3
arTal_v1_Chr3_+_3923969_3923969 Show fit	2.44	AT3G12320.3	AT3G12320 TAIR Show fit	hypothetical protein
arTal_v1_Chr3_+_3923515_3923515 Show fit	2.42	AT3G12320.1	AT3G12320 TAIR Show fit	hypothetical protein
arTal_v1_Chr3_+_3923735_3923735 Show fit	2.37	AT3G12320.2	AT3G12320 TAIR Show fit	hypothetical protein
arTal_v1_Chr4_-_13016235_13016235 Show fit	1.95	AT4G25470.1	CBF2 TAIR Show fit	C-repeat/DRE binding factor 2
arTal_v1_Chr5_+_579744_579852 Show fit	1.55	AT5G02580.1 AT5G02580.3 AT5G02580.2	AT5G02580 TAIR Show fit	argininosuccinate lyase
arTal_v1_Chr5_-_3595003_3595073 Show fit	1.51	AT5G11260.2 AT5G11260.1	HY5 TAIR Show fit	Basic-leucine zipper (bZIP) transcription factor family protein
arTal_v1_Chr5_-_23501416_23501416 Show fit	1.25	AT5G58070.1	TIL TAIR Show fit	temperature-induced lipocalin
arTal_v1_Chr2_-_13005600_13005746 Show fit	1.14	AT2G30520.2 AT2G30520.3 AT2G30520.1	RPT2 TAIR Show fit	Phototropic-responsive NPH3 family protein

Showing 1 to 10 of 46 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530_AT5G61380

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	8.3	GO:0006012	galactose metabolic process(GO:0006012)
0.1	2.2	GO:0031053	primary miRNA processing(GO:0031053)
0.0	1.9	GO:0009631	cold acclimation(GO:0009631)
0.1	1.5	GO:0031539	positive regulation of anthocyanin metabolic process(GO:0031539)
0.4	1.2	GO:0006883	cellular sodium ion homeostasis(GO:0006883) chloride ion homeostasis(GO:0055064)
0.1	1.1	GO:0070413	trehalose metabolism in response to stress(GO:0070413)
0.1	1.1	GO:0009638	phototropism(GO:0009638)
0.1	0.9	GO:0030522	blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0	0.9	GO:0010286	heat acclimation(GO:0010286)
0.2	0.8	GO:0010617	circadian regulation of calcium ion oscillation(GO:0010617)

Showing 1 to 10 of 13 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	2.2	GO:0010445	nuclear dicing body(GO:0010445)
0.1	1.2	GO:0009898	cytoplasmic side of plasma membrane(GO:0009898)
0.0	0.2	GO:0005786	signal recognition particle, endoplasmic reticulum targeting(GO:0005786)

Showing 1 to 3 of 3 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.9	8.3	GO:0047216	inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1	1.1	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0	1.0	GO:0080030	methyl indole-3-acetate esterase activity(GO:0080030)
0.2	0.8	GO:0031516	far-red light photoreceptor activity(GO:0031516)
0.0	0.5	GO:0004568	chitinase activity(GO:0004568)
0.0	0.2	GO:0030942	endoplasmic reticulum signal peptide binding(GO:0030942)
0.0	0.1	GO:0019139	cytokinin dehydrogenase activity(GO:0019139)

Showing 1 to 7 of 7 entries

Results for AT1G09530_AT5G61380

Z-value: 1.09

Transcription factors associated with AT1G09530_AT5G61380

Activity-expression correlation:

Activity profile of AT1G09530_AT5G61380 motif

Sorted Z-values of AT1G09530_AT5G61380 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530_AT5G61380

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: