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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G09530_AT5G61380
Z-value: 1.09
Transcription factors associated with AT1G09530_AT5G61380
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G09530
|
AT1G09530 | phytochrome interacting factor 3 |
|
AT5G61380
|
AT5G61380 | CCT motif -containing response regulator protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TOC1 | arTal_v1_Chr5_+_24674963_24674963 | 0.90 | 1.4e-05 | Click! |
| PIF3 | arTal_v1_Chr1_+_3076401_3076401 | 0.55 | 4.0e-02 | Click! |
Activity profile of AT1G09530_AT5G61380 motif
Sorted Z-values of AT1G09530_AT5G61380 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr1_+_3019639 | 4.32 |
AT1G09350.1
|
GolS3
|
galactinol synthase 3 |
| Chr1_+_3020221 | 4.02 |
AT1G09350.2
|
GolS3
|
galactinol synthase 3 |
| Chr3_+_3923969 | 2.44 |
AT3G12320.3
|
AT3G12320
|
hypothetical protein |
| Chr3_+_3923515 | 2.42 |
AT3G12320.1
|
AT3G12320
|
hypothetical protein |
| Chr3_+_3923735 | 2.37 |
AT3G12320.2
|
AT3G12320
|
hypothetical protein |
| Chr4_-_13016235 | 1.95 |
AT4G25470.1
|
CBF2
|
C-repeat/DRE binding factor 2 |
| Chr5_+_579744 | 1.55 |
AT5G02580.1
AT5G02580.3 AT5G02580.2 |
AT5G02580
|
argininosuccinate lyase |
| Chr5_-_3595003 | 1.51 |
AT5G11260.2
AT5G11260.1 |
HY5
|
Basic-leucine zipper (bZIP) transcription factor family protein |
| Chr5_-_23501416 | 1.25 |
AT5G58070.1
|
TIL
|
temperature-induced lipocalin |
| Chr2_-_13005600 | 1.14 |
AT2G30520.2
AT2G30520.3 AT2G30520.1 |
RPT2
|
Phototropic-responsive NPH3 family protein |
| Chr1_+_26038905 | 1.07 |
AT1G69260.1
|
AFP1
|
ABI five binding protein |
| Chr2_+_1076863 | 1.03 |
AT2G03550.1
|
AT2G03550
|
alpha/beta-Hydrolases superfamily protein |
| Chr4_+_13025834 | 0.99 |
AT4G25500.8
|
RS40
|
arginine/serine-rich splicing factor 35 |
| Chr4_-_16942060 | 0.97 |
AT4G35750.1
|
AT4G35750
|
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| Chr1_-_467873 | 0.95 |
AT1G02340.2
AT1G02340.1 |
HFR1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr3_+_23168454 | 0.84 |
AT3G62650.1
|
AT3G62650
|
hypothetical protein |
| Chr3_+_23168061 | 0.81 |
AT3G62650.2
|
AT3G62650
|
hypothetical protein |
| Chr4_-_347191 | 0.78 |
AT4G00810.1
AT4G00810.2 |
AT4G00810
|
60S acidic ribosomal protein family |
| Chr2_+_8139756 | 0.76 |
AT2G18790.2
AT2G18790.1 |
PHYB
|
phytochrome B |
| Chr4_+_13024498 | 0.69 |
AT4G25500.5
AT4G25500.2 AT4G25500.3 AT4G25500.1 AT4G25500.6 AT4G25500.4 |
RS40
|
arginine/serine-rich splicing factor 35 |
| Chr1_+_25497145 | 0.57 |
AT1G68020.3
AT1G68020.1 |
ATTPS6
|
UDP-Glycosyltransferase / trehalose-phosphatase family protein |
| Chr4_+_13024955 | 0.55 |
AT4G25500.7
|
RS40
|
arginine/serine-rich splicing factor 35 |
| Chr5_-_8145252 | 0.53 |
AT5G24090.1
|
CHIA
|
chitinase A |
| Chr3_+_22329048 | 0.53 |
AT3G60400.1
|
SHOT1
|
Mitochondrial transcription termination factor family protein |
| Chr1_+_25496928 | 0.48 |
AT1G68020.2
|
ATTPS6
|
UDP-Glycosyltransferase / trehalose-phosphatase family protein |
| Chr3_-_4123582 | 0.48 |
AT3G12920.1
|
BRG3
|
SBP (S-ribonuclease binding protein) family protein |
| Chr3_-_3923155 | 0.45 |
AT3G12300.1
|
BUG22
|
cilia/flagella-associated protein |
| Chr1_-_7267354 | 0.44 |
AT1G20890.2
AT1G20890.1 |
AT1G20890
|
caveolin-1 protein |
| Chr1_+_4459166 | 0.43 |
AT1G13080.2
|
CYP71B2
|
cytochrome P450, family 71, subfamily B, polypeptide 2 |
| Chr1_+_4459002 | 0.43 |
AT1G13080.1
|
CYP71B2
|
cytochrome P450, family 71, subfamily B, polypeptide 2 |
| Chr5_+_4156501 | 0.41 |
AT5G13100.1
|
AT5G13100
|
Gap junction beta-4 protein |
| Chr4_+_15819489 | 0.39 |
AT4G32800.1
|
AT4G32800
|
Integrase-type DNA-binding superfamily protein |
| Chr1_+_11249600 | 0.36 |
AT1G31420.2
AT1G31420.1 AT1G31420.3 |
FEI1
|
Leucine-rich repeat protein kinase family protein |
| Chr5_+_4441858 | 0.25 |
AT5G13760.1
|
AT5G13760
|
Plasma-membrane choline transporter family protein |
| Chr3_-_6804296 | 0.21 |
AT3G19580.1
|
ZF2
|
zinc-finger protein 2 |
| Chr2_+_762927 | 0.21 |
AT2G02720.1
|
AT2G02720
|
Pectate lyase family protein |
| Chr3_-_6804114 | 0.20 |
AT3G19580.2
|
ZF2
|
zinc-finger protein 2 |
| Chr5_+_24888596 | 0.18 |
AT5G61970.1
|
AT5G61970
|
signal recognition particle-related / SRP-like protein |
| Chr2_-_8138142 | 0.17 |
AT2G18780.1
|
AT2G18780
|
F-box and associated interaction domains-containing protein |
| Chr1_-_28318362 | 0.14 |
AT1G75450.1
AT1G75450.2 |
CKX5
|
cytokinin oxidase 5 |
| Chr2_+_19229070 | 0.10 |
AT2G46780.1
AT2G46780.2 |
AT2G46780
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
| Chr1_-_6898818 | 0.08 |
AT1G19870.1
AT1G19870.2 |
iqd32
|
IQ-domain 32 |
| Chr2_+_18839588 | 0.08 |
AT2G45740.3
AT2G45740.1 |
PEX11D
|
peroxin 11D |
| Chr1_+_29099839 | 0.06 |
AT1G77450.1
|
NAC032
|
NAC domain containing protein 32 |
| Chr5_+_25765712 | 0.06 |
AT5G64440.1
|
FAAH
|
fatty acid amide hydrolase |
| Chr2_+_18839435 | 0.05 |
AT2G45740.2
|
PEX11D
|
peroxin 11D |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G09530_AT5G61380
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | GO:0006883 | cellular sodium ion homeostasis(GO:0006883) chloride ion homeostasis(GO:0055064) |
| 0.3 | 8.3 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.2 | 0.8 | GO:0010617 | circadian regulation of calcium ion oscillation(GO:0010617) |
| 0.1 | 2.2 | GO:0031053 | primary miRNA processing(GO:0031053) |
| 0.1 | 1.5 | GO:0031539 | positive regulation of anthocyanin metabolic process(GO:0031539) |
| 0.1 | 1.1 | GO:0070413 | trehalose metabolism in response to stress(GO:0070413) |
| 0.1 | 1.1 | GO:0009638 | phototropism(GO:0009638) |
| 0.1 | 0.9 | GO:0030522 | blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522) |
| 0.0 | 0.5 | GO:0002221 | pattern recognition receptor signaling pathway(GO:0002221) |
| 0.0 | 1.9 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 0.1 | GO:0009823 | cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447) |
| 0.0 | 0.9 | GO:0010286 | heat acclimation(GO:0010286) |
| 0.0 | 0.1 | GO:0044375 | regulation of peroxisome size(GO:0044375) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.2 | GO:0010445 | nuclear dicing body(GO:0010445) |
| 0.1 | 1.2 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 0.2 | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting(GO:0005786) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 8.3 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.2 | 0.8 | GO:0031516 | far-red light photoreceptor activity(GO:0031516) |
| 0.1 | 1.1 | GO:0003825 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825) |
| 0.0 | 0.2 | GO:0030942 | endoplasmic reticulum signal peptide binding(GO:0030942) |
| 0.0 | 1.0 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.0 | 0.5 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 0.1 | GO:0019139 | cytokinin dehydrogenase activity(GO:0019139) |