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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G09530

Z-value: 2.73

Transcription factors associated with AT1G09530

Gene Symbol Gene ID Gene Info
AT1G09530 phytochrome interacting factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PIF3arTal_v1_Chr1_+_3076401_30764010.563.9e-02Click!

Activity profile of AT1G09530 motif

Sorted Z-values of AT1G09530 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_6763765 6.03 AT1G19530.1
AT1G19530.2
DNA polymerase epsilon catalytic subunit A
Chr1_-_9275193 5.92 AT1G26790.1
Dof-type zinc finger DNA-binding family protein
Chr5_+_15878698 3.78 AT5G39660.1
AT5G39660.3
AT5G39660.2
cycling DOF factor 2
Chr2_-_17202848 3.49 AT2G41250.1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr3_+_7959753 3.44 AT3G22440.1
FRIGIDA-like protein
Chr5_+_4776733 3.13 AT5G14780.1
AT5G14780.3
AT5G14780.2
formate dehydrogenase
Chr3_+_5243432 2.99 AT3G15510.1
NAC domain containing protein 2
Chr1_-_4679594 2.64 AT1G13640.2
Phosphatidylinositol 3- and 4-kinase family protein
Chr1_-_4679862 2.56 AT1G13640.1
Phosphatidylinositol 3- and 4-kinase family protein
Chr5_+_579744 2.54 AT5G02580.1
AT5G02580.3
AT5G02580.2
argininosuccinate lyase
Chr1_-_3756998 2.52 AT1G11210.1
cotton fiber protein, putative (DUF761)
Chr3_-_4042075 2.47 AT3G12710.1
DNA glycosylase superfamily protein
Chr5_+_332330 2.47 AT5G01850.2
AT5G01850.1
Protein kinase superfamily protein
Chr2_+_16474923 2.40 AT2G39460.1
ribosomal protein L23AA
Chr2_-_521707 2.39 AT2G02080.4
AT2G02080.2
AT2G02080.5
AT2G02080.6
AT2G02080.3
AT2G02080.1
indeterminate(ID)-domain 4
Chr2_+_16474149 2.33 AT2G39460.2
ribosomal protein L23AA
Chr2_-_19361162 2.24 AT2G47160.2
HCO3- transporter family
Chr2_-_19361328 2.23 AT2G47160.1
HCO3- transporter family
Chr1_-_28117405 2.17 AT1G74840.2
AT1G74840.1
Homeodomain-like superfamily protein
Chr3_+_5047376 2.13 AT3G14990.1
AT3G14990.3
Class I glutamine amidotransferase-like superfamily protein
Chr3_+_5047589 2.12 AT3G14990.2
Class I glutamine amidotransferase-like superfamily protein
Chr1_+_21043348 2.08 AT1G56220.2
AT1G56220.1
Dormancy/auxin associated family protein
Chr1_+_21042951 2.05 AT1G56220.4
AT1G56220.5
AT1G56220.3
Dormancy/auxin associated family protein
Chr5_-_22991530 2.03 AT5G56860.1
GATA type zinc finger transcription factor family protein
Chr3_-_20178982 1.98 AT3G54500.1
AT3G54500.4
AT3G54500.3
AT3G54500.8
AT3G54500.2
AT3G54500.5
AT3G54500.7
AT3G54500.6
agglutinin-like protein
Chr4_+_15120824 1.98 AT4G31080.1
AT4G31080.2
integral membrane metal-binding family protein (DUF2296)
Chr1_+_9825169 1.96 AT1G28130.1
Auxin-responsive GH3 family protein
Chr3_+_19393768 1.96 AT3G52290.1
IQ-domain 3
Chr2_+_2763449 1.92 AT2G06850.1
AT2G06850.2
xyloglucan endotransglucosylase/hydrolase 4
Chr5_+_648648 1.92 AT5G02840.3
AT5G02840.1
AT5G02840.5
AT5G02840.2
AT5G02840.4
LHY/CCA1-like 1
Chr4_+_12524186 1.88 AT4G24120.1
YELLOW STRIPE like 1
Chr1_+_9825914 1.85 AT1G28130.2
Auxin-responsive GH3 family protein
Chr1_+_8432179 1.82 AT1G23870.1
trehalose-phosphatase/synthase 9
Chr1_+_26742940 1.78 AT1G70940.1
Auxin efflux carrier family protein
Chr3_-_6901334 1.77 AT3G19850.1
Phototropic-responsive NPH3 family protein
Chr1_+_29404648 1.73 AT1G78150.2
AT1G78150.1
AT1G78150.3
N-lysine methyltransferase
Chr5_-_5662865 1.72 AT5G17230.3
AT5G17230.1
PHYTOENE SYNTHASE
Chr2_+_7988165 1.71 AT2G18390.1
ADP-ribosylation factor family protein
Chr1_-_6999523 1.69 AT1G20190.2
expansin 11
Chr4_+_9560078 1.68 AT4G16990.16
AT4G16990.17
AT4G16990.1
AT4G16990.3
AT4G16990.4
disease resistance protein (TIR-NBS class)
Chr3_+_23004788 1.68 AT3G62130.1
AT3G62130.2
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr4_+_10521259 1.67 AT4G19230.1
AT4G19230.2
cytochrome P450, family 707, subfamily A, polypeptide 1
Chr5_+_8863224 1.65 AT5G25460.1
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr3_+_5748497 1.64 AT3G16850.1
Pectin lyase-like superfamily protein
Chr5_+_5223934 1.64 AT5G16000.1
NSP-interacting kinase 1
Chr2_+_18119873 1.64 AT2G43710.1
AT2G43710.2
Plant stearoyl-acyl-carrier-protein desaturase family protein
Chr5_-_5662466 1.63 AT5G17230.2
AT5G17230.4
PHYTOENE SYNTHASE
Chr4_+_9558571 1.62 AT4G16990.5
AT4G16990.8
AT4G16990.7
AT4G16990.6
AT4G16990.2
AT4G16990.9
disease resistance protein (TIR-NBS class)
Chr3_+_17558793 1.62 AT3G47620.1
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Chr5_+_3111945 1.62 AT5G09970.1
cytochrome P450, family 78, subfamily A, polypeptide 7
Chr4_+_11663186 1.61 AT4G22010.1
SKU5 similar 4
Chr5_-_21751338 1.61 AT5G53540.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_14014646 1.60 AT4G28300.1
AT4G28300.2
formin-like protein (DUF1421)
Chr3_+_16138375 1.57 AT3G44550.2
fatty acid reductase 5
Chr3_+_8501556 1.56 AT3G23640.3
AT3G23640.2
heteroglycan glucosidase 1
Chr3_+_16818347 1.55 AT3G45780.2
phototropin 1
Chr1_+_4877506 1.54 AT1G14280.1
phytochrome kinase substrate 2
Chr4_+_14077676 1.54 AT4G28490.1
Leucine-rich receptor-like protein kinase family protein
Chr5_-_19163918 1.52 AT5G47180.2
AT5G47180.1
Plant VAMP (vesicle-associated membrane protein) family protein
Chr1_+_7366775 1.52 AT1G21050.1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr3_-_6086203 1.52 AT3G17770.1
Dihydroxyacetone kinase
Chr3_-_1340623 1.50 AT3G04860.1
hypothetical protein (DUF868)
Chr5_+_17224270 1.50 AT5G42950.1
GYF domain-containing protein
Chr3_+_16816721 1.49 AT3G45780.1
phototropin 1
Chr1_-_29005281 1.48 AT1G77200.1
Integrase-type DNA-binding superfamily protein
Chr3_-_21986351 1.48 AT3G59490.2
AT3G59490.1
AT3G59490.3
AT3G59490.4
hypothetical protein
Chr3_+_9843460 1.47 AT3G26760.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_+_6475113 1.47 AT3G18780.3
actin 2
Chr2_+_13116448 1.46 AT2G30780.1
AT2G30780.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_6474871 1.46 AT3G18780.1
actin 2
Chr1_-_6999839 1.46 AT1G20190.1
expansin 11
Chr5_+_17550179 1.45 AT5G43700.1
AUX/IAA transcriptional regulator family protein
Chr3_+_6474710 1.45 AT3G18780.2
actin 2
Chr1_-_18626441 1.45 AT1G50280.1
AT1G50280.2
Phototropic-responsive NPH3 family protein
Chr1_-_3820887 1.45 AT1G11350.1
S-domain-1 13
Chr1_+_7366590 1.45 AT1G21050.2
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr3_+_5731519 1.44 AT3G16830.1
TOPLESS-related 2
Chr3_-_3722741 1.43 AT3G11770.1
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr1_+_10758743 1.42 AT1G30440.1
Phototropic-responsive NPH3 family protein
Chr3_-_23004292 1.38 AT3G62120.2
AT3G62120.1
AT3G62120.3
Class II aaRS and biotin synthetases superfamily protein
Chr2_-_17240609 1.38 AT2G41370.1
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr3_-_3620064 1.37 AT3G11490.1
rac GTPase activating protein
Chr2_+_18727504 1.37 AT2G45430.1
AT-hook motif nuclear-localized protein 22
Chr5_+_23693259 1.37 AT5G58620.1
zinc finger (CCCH-type) family protein
Chr4_-_17666736 1.36 AT4G37590.1
Phototropic-responsive NPH3 family protein
Chr2_+_16588556 1.36 AT2G39770.1
AT2G39770.2
Glucose-1-phosphate adenylyltransferase family protein
Chr4_+_9559738 1.34 AT4G16990.11
AT4G16990.13
AT4G16990.12
disease resistance protein (TIR-NBS class)
Chr2_+_16588872 1.34 AT2G39770.3
Glucose-1-phosphate adenylyltransferase family protein
Chr5_-_18021508 1.34 AT5G44670.1
glycosyltransferase family protein (DUF23)
Chr5_+_25159208 1.33 AT5G62670.1
H[+]-ATPase 11
Chr3_+_16137576 1.33 AT3G44550.1
fatty acid reductase 5
Chr3_-_10383249 1.31 AT3G27960.2
AT3G27960.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_25236945 1.31 AT5G62880.2
AT5G62880.1
RAC-like 10
Chr5_+_306939 1.30 AT5G01800.1
saposin B domain-containing protein
Chr5_+_1536057 1.29 AT5G05180.2
AT5G05180.1
AT5G05180.3
myosin heavy chain, striated protein
Chr3_-_5045520 1.29 AT3G14980.4
AT3G14980.5
AT3G14980.2
AT3G14980.1
AT3G14980.3
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
Chr3_+_8501813 1.28 AT3G23640.1
heteroglycan glucosidase 1
Chr1_-_27697372 1.28 AT1G73660.1
protein tyrosine kinase family protein
Chr4_-_8524217 1.27 AT4G14900.1
FRIGIDA-like protein
Chr1_-_9879433 1.27 AT1G28260.2
AT1G28260.1
Telomerase activating protein Est1
Chr3_-_19991106 1.25 AT3G53990.2
AT3G53990.1
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr1_-_26683355 1.24 AT1G70750.1
myosin-binding protein (Protein of unknown function, DUF593)
Chr1_-_1071019 1.24 AT1G04120.3
AT1G04120.2
AT1G04120.1
multidrug resistance-associated protein 5
Chr1_+_6602105 1.22 AT1G19110.1
inter-alpha-trypsin inhibitor heavy chain-like protein
Chr5_+_3889906 1.21 AT5G12050.1
rho GTPase-activating protein
Chr1_+_30311527 1.20 AT1G80640.1
AT1G80640.2
Protein kinase superfamily protein
Chr4_-_17334355 1.20 AT4G36780.1
BES1/BZR1 homolog 2
Chr5_+_15409684 1.20 AT5G38480.1
AT5G38480.2
AT5G38480.3
general regulatory factor 3
Chr4_-_10714745 1.19 AT4G19700.1
SBP (S-ribonuclease binding protein) family protein
Chr2_-_12702443 1.18 AT2G29720.1
FAD/NAD(P)-binding oxidoreductase family protein
Chr4_+_1104429 1.17 AT4G02510.1
AT4G02510.3
AT4G02510.2
AT4G02510.4
translocon at the outer envelope membrane of chloroplasts 159
Chr4_-_10049394 1.16 AT4G18140.1
AT4G18140.5
AT4G18140.4
AT4G18140.6
AT4G18140.2
AT4G18140.3
SCP1-like small phosphatase 4b
Chr2_+_18108289 1.15 AT2G43680.4
AT2G43680.2
AT2G43680.5
AT2G43680.3
IQ-domain 14
Chr3_-_5662066 1.12 AT3G16620.1
translocon outer complex protein 120
Chr4_+_9559908 1.12 AT4G16990.15
AT4G16990.14
disease resistance protein (TIR-NBS class)
Chr5_+_9157142 1.10 AT5G26200.1
Mitochondrial substrate carrier family protein
Chr5_-_5862462 1.09 AT5G17760.2
AT5G17760.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_9560633 1.09 AT4G16990.19
AT4G16990.18
disease resistance protein (TIR-NBS class)
Chr2_-_13185973 1.09 AT2G30980.1
SHAGGY-related protein kinase dZeta
Chr1_-_20199193 1.09 AT1G54100.1
aldehyde dehydrogenase 7B4
Chr3_-_10382658 1.08 AT3G27960.3
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_21411904 1.08 AT3G57800.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_5766246 1.07 AT5G17490.1
RGA-like protein 3
Chr2_+_9513024 1.07 AT2G22420.1
Peroxidase superfamily protein
Chr1_-_20198973 1.07 AT1G54100.2
aldehyde dehydrogenase 7B4
Chr3_+_4176392 1.06 AT3G13050.1
AT3G13050.2
AT3G13050.3
Major facilitator superfamily protein
Chr5_+_883463 1.06 AT5G03520.2
RAB GTPase homolog 8C
Chr1_-_467873 1.06 AT1G02340.2
AT1G02340.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_883311 1.05 AT5G03520.1
RAB GTPase homolog 8C
Chr2_-_14302496 1.05 AT2G33800.1
Ribosomal protein S5 family protein
Chr3_-_21411612 1.05 AT3G57800.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_16612777 1.04 AT2G39810.1
AT2G39810.2
ubiquitin-protein ligase
Chr5_-_4582856 1.03 AT5G14210.1
AT5G14210.2
AT5G14210.3
Leucine-rich repeat protein kinase family protein
Chr4_+_351969 1.03 AT4G00830.1
AT4G00830.2
AT4G00830.3
AT4G00830.4
AT4G00830.5
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_+_1579929 1.03 AT4G03560.1
two-pore channel 1
Chr5_-_16384504 1.03 AT5G40890.2
chloride channel A
Chr3_-_3427058 1.03 AT3G10960.1
AZA-guanine resistant1
Chr3_-_17162475 1.01 AT3G46610.1
AT3G46610.2
Pentatricopeptide repeat (PPR-like) superfamily protein
Chr5_+_17166702 1.01 AT5G42810.1
inositol-pentakisphosphate 2-kinase 1
Chr3_+_8519136 1.01 AT3G23670.1
AT3G23670.2
phragmoplast-associated kinesin-related protein
Chr4_+_8231002 1.00 AT4G14300.2
AT4G14300.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_108946 1.00 AT1G01260.3
AT1G01260.1
AT1G01260.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_2971813 0.99 AT3G09690.1
alpha/beta-Hydrolases superfamily protein
Chr5_-_20451062 0.99 AT5G50230.1
Transducin/WD40 repeat-like superfamily protein
Chr3_+_256295 0.99 AT3G01690.1
alpha/beta-Hydrolases superfamily protein
Chr2_-_18639946 0.99 AT2G45200.1
AT2G45200.2
golgi snare 12
Chr1_-_10111731 0.97 AT1G28960.6
AT1G28960.7
AT1G28960.5
AT1G28960.1
AT1G28960.3
nudix hydrolase homolog 15
Chr3_+_23159656 0.97 AT3G62620.4
AT3G62620.1
AT3G62620.5
AT3G62620.6
AT3G62620.9
AT3G62620.2
AT3G62620.7
AT3G62620.8
AT3G62620.3
sucrose-phosphatase-like protein
Chr1_-_7692459 0.97 AT1G21900.1
emp24/gp25L/p24 family/GOLD family protein
Chr5_-_16385424 0.96 AT5G40890.1
chloride channel A
Chr2_+_7864175 0.95 AT2G18090.2
AT2G18090.1
PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein
Chr4_+_15233042 0.95 AT4G31390.3
AT4G31390.1
AT4G31390.2
Protein kinase superfamily protein
Chr5_-_221198 0.94 AT5G01560.1
lectin receptor kinase a4.3
Chr3_+_2972174 0.94 AT3G09690.2
alpha/beta-Hydrolases superfamily protein
Chr3_+_6780563 0.93 AT3G19540.1
glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
Chr3_+_19069303 0.92 AT3G51370.3
AT3G51370.2
Protein phosphatase 2C family protein
Chr3_-_4496800 0.92 AT3G13720.1
PRA1 (Prenylated rab acceptor) family protein
Chr2_-_15993276 0.91 AT2G38170.2
AT2G38170.3
AT2G38170.1
cation exchanger 1
Chr2_+_15818082 0.91 AT2G37720.1
TRICHOME BIREFRINGENCE-LIKE 15
Chr5_-_25528013 0.91 AT5G63790.1
NAC domain containing protein 102
Chr3_+_2388703 0.90 AT3G07480.1
2Fe-2S ferredoxin-like superfamily protein
Chr2_-_12428730 0.90 AT2G28940.1
AT2G28940.2
Protein kinase superfamily protein
Chr5_-_21285366 0.88 AT5G52430.1
hydroxyproline-rich glycoprotein family protein
Chr4_-_16583075 0.88 AT4G34760.1
SAUR-like auxin-responsive protein family
Chr5_+_2144525 0.87 AT5G06930.2
AT5G06930.1
nucleolar-like protein
Chr1_+_8962087 0.87 AT1G25520.1
Uncharacterized protein family (UPF0016)
Chr2_-_16432751 0.87 AT2G39350.1
ABC-2 type transporter family protein
Chr2_+_18108119 0.86 AT2G43680.1
IQ-domain 14
Chr3_-_399798 0.86 AT3G02170.2
AT3G02170.3
longifolia2
Chr5_-_4915976 0.85 AT5G15150.1
homeobox 3
Chr1_-_20068500 0.85 AT1G53750.1
regulatory particle triple-A 1A
Chr3_-_23276630 0.85 AT3G62980.1
F-box/RNI-like superfamily protein
Chr3_-_9595283 0.84 AT3G26210.1
cytochrome P450, family 71, subfamily B, polypeptide 23
Chr1_-_26811848 0.84 AT1G71080.1
RNA polymerase II transcription elongation factor
Chr3_+_19069127 0.84 AT3G51370.1
Protein phosphatase 2C family protein
Chr4_-_9428894 0.83 AT4G16760.1
AT4G16760.2
acyl-CoA oxidase 1
Chr3_+_219582 0.83 AT3G01560.2
AT3G01560.1
proline-rich receptor-like kinase, putative (DUF1421)
Chr5_-_25528281 0.83 AT5G63790.2
NAC domain containing protein 102
Chr5_-_2325419 0.83 AT5G07350.2
AT5G07350.1
TUDOR-SN protein 1
Chr3_-_6792988 0.82 AT3G19553.1
Amino acid permease family protein
Chr5_+_5990909 0.81 AT5G18120.2
AT5G18120.1
AT5G18120.3
APR-like 7
Chr2_+_12703469 0.81 AT2G29730.1
UDP-glucosyl transferase 71D1
Chr1_+_8061751 0.80 AT1G22770.1
gigantea protein (GI)
Chr2_+_8431363 0.80 AT2G19460.2
AT2G19460.1
DUF3511 domain protein (DUF3511)
Chr1_-_6860376 0.80 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
filament-like protein (DUF869)
Chr2_+_18524311 0.80 AT2G44920.2
AT2G44920.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_961997 0.80 AT3G03790.1
AT3G03790.3
ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Chr2_+_8324653 0.79 AT2G19180.2
AT2G19180.1
hypothetical protein
Chr1_-_1587774 0.78 AT1G05410.2
AT1G05410.1
CDPK adapter, putative (DUF1423)
Chr5_+_625254 0.77 AT5G02760.1
Protein phosphatase 2C family protein
Chr4_-_18206684 0.77 AT4G39070.1
B-box zinc finger family protein
Chr4_+_10940662 0.77 AT4G20260.7
AT4G20260.9
AT4G20260.8
AT4G20260.10
AT4G20260.5
AT4G20260.6
AT4G20260.1
AT4G20260.4
AT4G20260.3
plasma-membrane associated cation-binding protein 1
Chr1_+_4010757 0.77 AT1G11890.1
Synaptobrevin family protein
Chr1_+_19434480 0.76 AT1G52190.1
Major facilitator superfamily protein
Chr5_+_6458776 0.76 AT5G19200.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_17689743 0.76 AT3G47940.1
DNAJ heat shock family protein
Chr1_-_22794714 0.74 AT1G61730.1
DNA-binding storekeeper protein-related transcriptional regulator
Chr2_+_17627894 0.74 AT2G42320.4
AT2G42320.1
nucleolar protein gar2-like protein
Chr1_-_7662725 0.72 AT1G21830.1
hypothetical protein
Chr4_+_10329613 0.72 AT4G18820.1
AAA-type ATPase family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 4.3 GO:1900409 positive regulation of cellular response to oxidative stress(GO:1900409)
0.9 4.5 GO:0046713 borate transport(GO:0046713)
0.8 6.0 GO:0009061 anaerobic respiration(GO:0009061)
0.7 0.7 GO:1900407 regulation of cellular response to oxidative stress(GO:1900407)
0.6 3.0 GO:0010360 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.6 7.4 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.6 1.7 GO:0009093 cysteine catabolic process(GO:0009093)
0.5 1.6 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.5 1.5 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.5 3.0 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.5 1.4 GO:0010254 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.4 1.3 GO:1901881 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377) regulation of microtubule depolymerization(GO:0031114) negative regulation of microtubule polymerization(GO:0031115) cellular response to copper ion(GO:0071280) cellular response to iron ion(GO:0071281) intracellular transport of virus(GO:0075733) positive regulation of protein depolymerization(GO:1901881)
0.4 1.7 GO:0015697 quaternary ammonium group transport(GO:0015697)
0.4 1.7 GO:0048838 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.4 1.1 GO:0006666 3-keto-sphinganine metabolic process(GO:0006666)
0.4 1.4 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.3 1.7 GO:0009558 embryo sac cellularization(GO:0009558)
0.3 2.7 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.3 1.3 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.3 1.3 GO:0061062 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.3 2.2 GO:0019405 alditol catabolic process(GO:0019405) glycerol catabolic process(GO:0019563)
0.3 2.7 GO:0006882 cellular zinc ion homeostasis(GO:0006882)
0.3 1.4 GO:0009647 skotomorphogenesis(GO:0009647)
0.3 1.0 GO:0080140 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.3 1.0 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.3 1.0 GO:0030643 cellular phosphate ion homeostasis(GO:0030643) inositol phosphorylation(GO:0052746) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.3 1.0 GO:0007112 male meiosis cytokinesis(GO:0007112)
0.2 2.0 GO:0006821 chloride transport(GO:0006821)
0.2 1.4 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.2 3.0 GO:0048317 seed morphogenesis(GO:0048317)
0.2 0.7 GO:0010113 negative regulation of systemic acquired resistance(GO:0010113)
0.2 3.0 GO:0010274 hydrotropism(GO:0010274)
0.2 1.0 GO:0033869 purine ribonucleotide catabolic process(GO:0009154) ribonucleotide catabolic process(GO:0009261) coenzyme A catabolic process(GO:0015938) nucleoside bisphosphate catabolic process(GO:0033869) ribonucleoside bisphosphate catabolic process(GO:0034031) purine nucleoside bisphosphate catabolic process(GO:0034034)
0.2 2.9 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.2 0.8 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.2 1.3 GO:0006751 glutathione catabolic process(GO:0006751)
0.2 1.3 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.2 1.2 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.2 1.6 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.2 2.1 GO:0017157 regulation of exocytosis(GO:0017157)
0.2 1.5 GO:0060866 leaf abscission(GO:0060866)
0.2 4.4 GO:0048768 root hair cell tip growth(GO:0048768)
0.2 6.0 GO:0010252 auxin homeostasis(GO:0010252)
0.2 0.5 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.2 1.5 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.1 4.7 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.1 0.4 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 0.8 GO:0015846 polyamine transport(GO:0015846)
0.1 1.9 GO:0010039 response to iron ion(GO:0010039)
0.1 0.9 GO:0045899 regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045898) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899)
0.1 0.4 GO:0071494 cellular response to UV-C(GO:0071494)
0.1 1.2 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.1 0.8 GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.1 0.7 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.1 0.8 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.1 0.6 GO:1902065 response to L-glutamate(GO:1902065)
0.1 1.0 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.1 1.8 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.1 0.3 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.1 1.2 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.1 2.0 GO:0010152 pollen maturation(GO:0010152)
0.1 0.5 GO:0071277 cellular response to calcium ion(GO:0071277)
0.1 0.9 GO:1990937 xylan acetylation(GO:1990937)
0.1 2.7 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.1 3.8 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 0.6 GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.1 2.4 GO:0008356 asymmetric cell division(GO:0008356)
0.1 0.7 GO:0009560 embryo sac egg cell differentiation(GO:0009560)
0.1 2.2 GO:0009269 response to desiccation(GO:0009269)
0.1 1.1 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 0.5 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.1 2.5 GO:0006284 base-excision repair(GO:0006284)
0.1 0.4 GO:0010155 regulation of proton transport(GO:0010155)
0.1 1.9 GO:0009612 response to mechanical stimulus(GO:0009612)
0.1 1.6 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.1 0.9 GO:0005987 sucrose catabolic process(GO:0005987)
0.1 1.5 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 0.5 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.1 1.6 GO:0010229 inflorescence development(GO:0010229)
0.1 1.1 GO:0009785 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.1 3.1 GO:0072329 monocarboxylic acid catabolic process(GO:0072329)
0.1 1.2 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.1 2.5 GO:0010075 regulation of meristem growth(GO:0010075)
0.0 1.1 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 1.6 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 0.5 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 1.9 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.0 0.7 GO:0009638 phototropism(GO:0009638)
0.0 0.6 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.2 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.5 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.5 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 0.5 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 0.9 GO:0002229 defense response to oomycetes(GO:0002229)
0.0 1.3 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 1.1 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 1.4 GO:0009816 defense response to bacterium, incompatible interaction(GO:0009816)
0.0 0.5 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.0 0.7 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.8 GO:0009958 positive gravitropism(GO:0009958)
0.0 0.9 GO:0010927 pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.7 GO:0071900 regulation of protein serine/threonine kinase activity(GO:0071900)
0.0 0.5 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 0.2 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.5 GO:0070417 cellular response to cold(GO:0070417)
0.0 0.5 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.8 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 2.4 GO:0009860 pollen tube growth(GO:0009860)
0.0 0.9 GO:0009631 cold acclimation(GO:0009631)
0.0 1.8 GO:0016143 S-glycoside metabolic process(GO:0016143) glycosinolate metabolic process(GO:0019757) glucosinolate metabolic process(GO:0019760)
0.0 2.6 GO:0046777 protein autophosphorylation(GO:0046777)
0.0 0.7 GO:0044419 interspecies interaction between organisms(GO:0044419)
0.0 0.5 GO:0000723 telomere maintenance(GO:0000723) telomere organization(GO:0032200) anatomical structure homeostasis(GO:0060249)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
2.1 6.2 GO:0016328 lateral plasma membrane(GO:0016328)
0.2 3.6 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.2 1.3 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.1 2.0 GO:0005801 cis-Golgi network(GO:0005801)
0.1 0.7 GO:0009360 DNA polymerase III complex(GO:0009360)
0.1 0.7 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.1 1.1 GO:0009531 secondary cell wall(GO:0009531)
0.1 1.2 GO:0012507 ER to Golgi transport vesicle membrane(GO:0012507)
0.1 0.9 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.0 0.5 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 1.0 GO:0005871 kinesin complex(GO:0005871)
0.0 2.9 GO:0010287 plastoglobule(GO:0010287)
0.0 0.8 GO:0008023 transcription elongation factor complex(GO:0008023)
0.0 2.3 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 1.3 GO:0005881 cytoplasmic microtubule(GO:0005881)
0.0 0.5 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.0 4.7 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.8 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.6 GO:0009574 preprophase band(GO:0009574)
0.0 1.0 GO:0005875 microtubule associated complex(GO:0005875)
0.0 2.0 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.8 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.7 GO:0046540 U4/U6 x U5 tri-snRNP complex(GO:0046540)
0.0 3.1 GO:1990204 oxidoreductase complex(GO:1990204)
0.0 0.5 GO:0000781 chromosome, telomeric region(GO:0000781)
0.0 0.1 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.0 0.7 GO:0000137 Golgi cis cisterna(GO:0000137)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 4.3 GO:0019172 glyoxalase III activity(GO:0019172)
0.9 2.7 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.9 4.5 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.7 2.7 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.7 2.0 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.6 4.2 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.5 2.9 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.5 1.9 GO:0015603 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
0.4 1.3 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.4 5.2 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.4 1.1 GO:0047560 3-dehydrosphinganine reductase activity(GO:0047560)
0.3 3.0 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.3 1.7 GO:0080146 L-cysteine desulfhydrase activity(GO:0080146)
0.3 1.7 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.3 1.0 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.3 1.3 GO:0070034 telomerase RNA binding(GO:0070034)
0.3 1.4 GO:0003680 AT DNA binding(GO:0003680)
0.3 1.3 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.3 2.0 GO:0010011 auxin binding(GO:0010011)
0.2 2.5 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.2 0.7 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216) SUMO transferase activity(GO:0019789)
0.2 0.7 GO:0004438 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.2 2.2 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.2 7.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.2 0.5 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.2 1.0 GO:0051765 inositol tetrakisphosphate kinase activity(GO:0051765)
0.2 0.8 GO:0015203 polyamine transmembrane transporter activity(GO:0015203)
0.2 0.9 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.1 1.0 GO:0001653 peptide receptor activity(GO:0001653)
0.1 1.5 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.1 0.6 GO:0001664 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.1 0.4 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.1 1.3 GO:0070300 phosphatidic acid binding(GO:0070300)
0.1 0.8 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.1 1.8 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 1.2 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.1 1.6 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 1.4 GO:0051879 Hsp90 protein binding(GO:0051879)
0.1 3.2 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 1.9 GO:0019902 phosphatase binding(GO:0019902)
0.1 1.0 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 0.5 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.1 0.5 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.1 0.5 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.1 3.6 GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor(GO:0016620)
0.1 1.6 GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water(GO:0016717)
0.1 0.6 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.1 0.8 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 0.9 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.1 1.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.1 0.7 GO:0017070 U6 snRNA binding(GO:0017070)
0.1 0.9 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.1 1.2 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.1 0.7 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.1 1.5 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.1 0.9 GO:0017025 TBP-class protein binding(GO:0017025)
0.1 0.6 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.1 0.2 GO:0008301 DNA binding, bending(GO:0008301)
0.0 0.7 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.5 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.0 2.6 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 1.4 GO:0004402 histone acetyltransferase activity(GO:0004402) peptide-lysine-N-acetyltransferase activity(GO:0061733)
0.0 0.5 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 1.7 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 2.5 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 1.0 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 1.2 GO:0071949 FAD binding(GO:0071949)
0.0 1.0 GO:0005262 calcium channel activity(GO:0005262)
0.0 1.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 1.4 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.8 GO:0051087 chaperone binding(GO:0051087)
0.0 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 1.0 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 1.3 GO:0015103 inorganic anion transmembrane transporter activity(GO:0015103)
0.0 0.6 GO:0016597 amino acid binding(GO:0016597)
0.0 0.2 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 4.7 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.9 GO:0051540 iron-sulfur cluster binding(GO:0051536) metal cluster binding(GO:0051540)
0.0 10.6 GO:0001067 regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212)
0.0 2.1 GO:0003682 chromatin binding(GO:0003682)
0.0 0.7 GO:0019887 protein kinase regulator activity(GO:0019887)
0.0 0.5 GO:0042393 histone binding(GO:0042393)
0.0 2.2 GO:0030246 carbohydrate binding(GO:0030246)
0.0 0.5 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.1 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 3.7 GO:0043565 sequence-specific DNA binding(GO:0043565)
0.0 1.4 GO:0008017 microtubule binding(GO:0008017)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.3 0.9 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.2 0.8 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.1 1.2 REACTOME METABOLISM OF CARBOHYDRATES Genes involved in Metabolism of carbohydrates
0.1 0.5 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System