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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G08320
Z-value: 1.99
Transcription factors associated with AT1G08320
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G08320
|
AT1G08320 | bZIP transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TGA9 | arTal_v1_Chr1_-_2627721_2627721 | -0.24 | 4.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 5.59 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 5.29 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 5.06 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 4.63 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 4.55 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 4.54 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 4.09 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr1_-_5160179_5160179 Show fit | 4.07 |
AT1G14960.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 4.02 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 4.01 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G08320
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 24.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 23.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 11.8 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 9.0 | GO:0010043 | response to zinc ion(GO:0010043) |
| 2.2 | 8.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 1.3 | 6.4 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.3 | 5.8 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.2 | 5.6 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.1 | 5.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.3 | 5.3 | GO:0080003 | thalianol metabolic process(GO:0080003) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 42.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 9.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 7.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 6.5 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 5.2 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 3.0 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 2.8 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 2.1 | GO:0000145 | exocyst(GO:0000145) |
| 0.1 | 1.8 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.6 | GO:0090406 | pollen tube(GO:0090406) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 7.8 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.6 | 7.8 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 1.3 | 6.4 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 6.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.8 | 6.0 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.5 | 5.9 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.0 | 5.9 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.3 | 5.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 5.3 | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors(GO:0016627) |
| 0.2 | 5.0 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.9 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.6 | 1.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.3 | 1.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.4 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 1.0 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.9 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.0 | 0.5 | REACTOME TELOMERE MAINTENANCE | Genes involved in Telomere Maintenance |
| 0.1 | 0.4 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.4 | REACTOME G1 PHASE | Genes involved in G1 Phase |