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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G08010
Z-value: 4.21
Transcription factors associated with AT1G08010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G08010
|
AT1G08010 | GATA transcription factor 11 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA11 | arTal_v1_Chr1_-_2487850_2487850 | -0.07 | 8.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_18189523_18189523 Show fit | 5.84 |
AT5G45070.1
|
phloem protein 2-A8 |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 5.67 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr3_+_5025383_5025383 Show fit | 4.88 |
AT3G14940.2
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 4.87 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr3_+_5025184_5025184 Show fit | 4.83 |
AT3G14940.1
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr4_+_11753842_11753842 Show fit | 4.72 |
AT4G22212.1
|
defensin-like protein |
|
| arTal_v1_Chr1_-_3167924_3167924 Show fit | 4.45 |
AT1G09780.1
|
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent |
|
| arTal_v1_Chr1_-_598657_598657 Show fit | 4.36 |
AT1G02730.1
|
cellulose synthase-like D5 |
|
| arTal_v1_Chr3_-_20142763_20142763 Show fit | 4.22 |
AT3G54400.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_-_24703041_24703166 Show fit | 4.12 |
AT1G66270.2
AT1G66270.1 |
Glycosyl hydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G08010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 17.1 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.1 | 16.7 | GO:0007017 | microtubule-based process(GO:0007017) |
| 0.3 | 13.4 | GO:0051085 | 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085) |
| 0.5 | 11.1 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
| 0.1 | 10.9 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.6 | 10.3 | GO:0000919 | cell plate assembly(GO:0000919) |
| 0.2 | 9.7 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.2 | 9.3 | GO:0030244 | cellulose biosynthetic process(GO:0030244) |
| 0.1 | 8.4 | GO:0006869 | lipid transport(GO:0006869) |
| 0.0 | 7.9 | GO:0006412 | translation(GO:0006412) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 61.8 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 56.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 54.0 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.4 | 38.3 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 27.0 | GO:0071944 | cell periphery(GO:0071944) |
| 0.1 | 23.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 20.3 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 1.3 | 17.2 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.4 | 16.2 | GO:0009504 | cell plate(GO:0009504) |
| 0.1 | 14.0 | GO:0098791 | Golgi subcompartment(GO:0098791) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 33.4 | GO:0005198 | structural molecule activity(GO:0005198) |
| 0.6 | 20.4 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.0 | 19.2 | GO:0016757 | transferase activity, transferring glycosyl groups(GO:0016757) |
| 0.1 | 14.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 2.6 | 13.1 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.1 | 11.3 | GO:0004721 | phosphoprotein phosphatase activity(GO:0004721) |
| 0.1 | 10.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 8.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.9 | 8.3 | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism(GO:0046933) |
| 0.3 | 8.3 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 2.2 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.4 | 1.2 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.2 | 1.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.2 | 0.9 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
| 0.3 | 0.8 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.7 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.3 | 0.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.1 | 0.3 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.8 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 1.0 | 2.9 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.6 | 2.2 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
| 0.4 | 1.8 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.6 | 1.7 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.4 | 1.7 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.2 | 1.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.5 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.5 | 1.4 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.2 | 1.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |