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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G06850
Z-value: 1.36
Transcription factors associated with AT1G06850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G06850
|
AT1G06850 | basic leucine-zipper 52 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP52 | arTal_v1_Chr1_+_2105048_2105055 | 0.55 | 4.0e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 2.05 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.65 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr2_-_12343443_12343443 Show fit | 1.60 |
AT2G28780.1
|
P-hydroxybenzoic acid efflux pump subunit |
|
| arTal_v1_Chr1_+_28498821_28498821 Show fit | 1.58 |
AT1G75900.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 1.56 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr4_+_9028262_9028262 Show fit | 1.51 |
AT4G15910.1
|
drought-induced 21 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 1.38 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_18189523_18189523 Show fit | 1.28 |
AT5G45070.1
|
phloem protein 2-A8 |
|
| arTal_v1_Chr1_-_28442429_28442435 Show fit | 1.26 |
AT1G75750.2
AT1G75750.1 |
GAST1 protein homolog 1 |
|
| arTal_v1_Chr3_+_18940643_18940643 Show fit | 1.22 |
AT3G50970.1
|
dehydrin family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G06850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.6 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.0 | 3.6 | GO:0006457 | protein folding(GO:0006457) |
| 0.0 | 3.6 | GO:0007017 | microtubule-based process(GO:0007017) |
| 0.1 | 3.0 | GO:0070417 | cellular response to cold(GO:0070417) |
| 0.2 | 2.9 | GO:0010555 | response to mannitol(GO:0010555) |
| 0.2 | 2.6 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.0 | 2.6 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.4 | 2.5 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 2.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 2.4 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.0 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 9.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 6.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 5.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.6 | GO:0005768 | endosome(GO:0005768) |
| 0.0 | 4.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.2 | 3.2 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 3.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.2 | 3.0 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.1 | 2.6 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.2 | GO:0005198 | structural molecule activity(GO:0005198) |
| 0.0 | 3.6 | GO:0005525 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.1 | 3.4 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.0 | 3.3 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.2 | 3.2 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.1 | 3.2 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 3.0 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 2.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.5 | 2.1 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 2.1 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.2 | 0.7 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.2 | 0.6 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
| 0.2 | 0.5 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 0.5 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.1 | 0.5 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.5 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.3 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.3 | 1.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 1.5 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.3 | 1.0 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.0 | 0.8 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.2 | 0.7 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.2 | 0.6 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |
| 0.1 | 0.4 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.4 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.1 | 0.3 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |