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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G06180
Z-value: 0.71
Transcription factors associated with AT1G06180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G06180
|
AT1G06180 | myb domain protein 13 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB13 | arTal_v1_Chr1_+_1889362_1889362 | 0.40 | 1.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_15560755_15560755 Show fit | 0.61 |
AT2G37040.1
|
PHE ammonia lyase 1 |
|
| arTal_v1_Chr5_+_16431304_16431391 Show fit | 0.58 |
AT5G41040.1
AT5G41040.2 |
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr5_-_16252434_16252434 Show fit | 0.58 |
AT5G40590.1
|
Cysteine/Histidine-rich C1 domain family protein |
|
| arTal_v1_Chr1_-_1821894_1821894 Show fit | 0.56 |
AT1G06000.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr2_+_10177776_10177785 Show fit | 0.54 |
AT2G23910.2
AT2G23910.3 AT2G23910.1 AT2G23910.4 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_8107254_8107254 Show fit | 0.54 |
AT4G14060.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr4_-_810574_810611 Show fit | 0.53 |
AT4G01870.1
AT4G01870.2 |
tolB protein-like protein |
|
| arTal_v1_Chr5_-_2365605_2365605 Show fit | 0.53 |
AT5G07475.1
|
Cupredoxin superfamily protein |
|
| arTal_v1_Chr5_-_23501416_23501416 Show fit | 0.52 |
AT5G58070.1
|
temperature-induced lipocalin |
|
| arTal_v1_Chr1_+_17966383_17966383 Show fit | 0.52 |
AT1G48600.1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G06180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.3 | 1.5 | GO:0009800 | cinnamic acid biosynthetic process(GO:0009800) |
| 0.0 | 1.4 | GO:0010099 | regulation of photomorphogenesis(GO:0010099) |
| 0.1 | 1.3 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.0 | 1.3 | GO:0009411 | response to UV(GO:0009411) |
| 0.4 | 1.1 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
| 0.0 | 1.0 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.1 | 0.8 | GO:0006656 | phosphatidylcholine biosynthetic process(GO:0006656) |
| 0.1 | 0.7 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.1 | 0.7 | GO:0009423 | chorismate biosynthetic process(GO:0009423) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 1.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 0.6 | GO:0010316 | pyrophosphate-dependent phosphofructokinase complex(GO:0010316) |
| 0.0 | 0.6 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 0.5 | GO:0010330 | cellulose synthase complex(GO:0010330) |
| 0.0 | 0.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.4 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.1 | 0.3 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
| 0.1 | 0.3 | GO:0031429 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
| 0.1 | 0.3 | GO:0042645 | mitochondrial nucleoid(GO:0042645) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.3 | 1.4 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |
| 0.0 | 1.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.3 | 1.0 | GO:0000234 | phosphoethanolamine N-methyltransferase activity(GO:0000234) |
| 0.0 | 1.0 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 0.9 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.1 | 0.9 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
| 0.0 | 0.9 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 0.8 | GO:0042409 | caffeoyl-CoA O-methyltransferase activity(GO:0042409) |
| 0.0 | 0.8 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.3 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | PID PLK1 PATHWAY | PLK1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |