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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G03800
Z-value: 1.02
Transcription factors associated with AT1G03800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G03800
|
AT1G03800 | ERF domain protein 10 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF10 | arTal_v1_Chr1_-_958383_958383 | 0.36 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.14 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_16998925_16998925 Show fit | 1.09 |
AT5G42510.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr3_-_21798303_21798303 Show fit | 1.08 |
AT3G58990.1
|
isopropylmalate isomerase 1 |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 1.02 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.01 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_8559066_8559066 Show fit | 0.99 |
AT1G24170.1
|
Nucleotide-diphospho-sugar transferases superfamily protein |
|
| arTal_v1_Chr1_-_28581315_28581315 Show fit | 0.95 |
AT1G76160.1
|
SKU5 similar 5 |
|
| arTal_v1_Chr5_+_4370692_4370692 Show fit | 0.95 |
AT5G13580.1
|
ABC-2 type transporter family protein |
|
| arTal_v1_Chr5_-_17331646_17331646 Show fit | 0.90 |
AT5G43170.1
|
zinc-finger protein 3 |
|
| arTal_v1_Chr1_+_25574381_25574381 Show fit | 0.88 |
AT1G68238.1
|
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G03800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.2 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 2.8 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.1 | 2.7 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 2.6 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.0 | 2.5 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 2.0 | GO:0042335 | cuticle development(GO:0042335) |
| 0.0 | 1.8 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 1.8 | GO:0000160 | phosphorelay signal transduction system(GO:0000160) |
| 0.5 | 1.6 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.0 | 1.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 21.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 1.3 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 1.1 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.3 | 1.0 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.1 | 1.0 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 1.0 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 0.9 | GO:0005811 | lipid particle(GO:0005811) |
| 0.3 | 0.8 | GO:0045178 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.1 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 2.3 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 2.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.0 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 1.9 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.5 | 1.8 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.0 | 1.8 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.0 | 1.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.6 | 1.7 | GO:0003861 | 3-isopropylmalate dehydratase activity(GO:0003861) |
| 0.0 | 1.7 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.0 | 0.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.3 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 0.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.3 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| 0.1 | 0.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.2 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.2 | REACTOME HEMOSTASIS | Genes involved in Hemostasis |