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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G02250
Z-value: 1.51
Transcription factors associated with AT1G02250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G02250
|
AT1G02250 | NAC domain containing protein 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC005 | arTal_v1_Chr1_-_439559_439559 | 0.09 | 7.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 4.60 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 2.48 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 2.46 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr4_+_14954204_14954204 Show fit | 2.28 |
AT4G30650.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 2.06 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr4_+_8827600_8827710 Show fit | 2.02 |
AT4G15430.2
AT4G15430.1 |
ERD (early-responsive to dehydration stress) family protein |
|
| arTal_v1_Chr3_-_2569700_2569700 Show fit | 1.83 |
AT3G08040.2
AT3G08040.1 |
MATE efflux family protein |
|
| arTal_v1_Chr2_+_6893949_6893949 Show fit | 1.81 |
AT2G15830.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_37757_37871 Show fit | 1.79 |
AT1G01060.3
AT1G01060.2 AT1G01060.4 AT1G01060.1 AT1G01060.6 AT1G01060.7 AT1G01060.5 |
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr2_-_12343443_12343443 Show fit | 1.76 |
AT2G28780.1
|
P-hydroxybenzoic acid efflux pump subunit |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G02250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.0 | GO:0006412 | translation(GO:0006412) |
| 0.5 | 4.8 | GO:0009819 | drought recovery(GO:0009819) |
| 0.0 | 4.2 | GO:0007623 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.1 | 3.5 | GO:0042631 | cellular response to water deprivation(GO:0042631) |
| 0.1 | 3.3 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.0 | 3.1 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.2 | 2.9 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.1 | 2.9 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 2.9 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.7 | 2.7 | GO:0043433 | negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 19.7 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 9.6 | GO:0044435 | plastid part(GO:0044435) |
| 0.0 | 4.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.7 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.1 | 4.2 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 3.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 2.9 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 2.9 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 2.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 2.2 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 6.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 4.9 | GO:0016859 | cis-trans isomerase activity(GO:0016859) |
| 0.2 | 4.7 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.1 | 4.0 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.6 | 3.7 | GO:0004310 | farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996) |
| 0.6 | 3.7 | GO:0070547 | L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547) |
| 0.2 | 3.2 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 3.1 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 2.9 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.9 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.2 | 0.6 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.1 | 0.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 0.3 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.1 | 0.3 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.0 | 0.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.1 | 0.2 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | REACTOME TRANSLATION | Genes involved in Translation |
| 0.5 | 1.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.2 | 0.9 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.9 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.1 | 0.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.8 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 0.7 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.6 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.2 | 0.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 0.5 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |