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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G01720
Z-value: 2.09
Transcription factors associated with AT1G01720
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G01720
|
AT1G01720 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ATAF1 | arTal_v1_Chr1_+_267993_267993 | 0.31 | 2.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 3.45 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr3_+_18940643_18940643 Show fit | 2.88 |
AT3G50970.1
|
dehydrin family protein |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 2.60 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 2.58 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_9607402_9607402 Show fit | 2.56 |
AT4G17090.1
|
chloroplast beta-amylase |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 2.51 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr1_+_4662698_4662752 Show fit | 2.50 |
AT1G13609.1
AT1G13609.2 |
Defensin-like (DEFL) family protein |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 2.48 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr1_-_1704838_1704838 Show fit | 2.36 |
AT1G05680.1
|
Uridine diphosphate glycosyltransferase 74E2 |
|
| arTal_v1_Chr4_+_14954204_14954204 Show fit | 2.33 |
AT4G30650.1
|
Low temperature and salt responsive protein family |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G01720
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.2 | GO:0043043 | peptide biosynthetic process(GO:0043043) |
| 0.3 | 9.0 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 7.5 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 6.9 | GO:0046686 | response to cadmium ion(GO:0046686) |
| 0.1 | 6.2 | GO:0046283 | anthocyanin-containing compound metabolic process(GO:0046283) |
| 0.1 | 5.5 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 5.0 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.1 | 4.7 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
| 0.8 | 4.6 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.6 | 4.5 | GO:0010106 | cellular response to iron ion starvation(GO:0010106) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 70.6 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 27.9 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 27.3 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 11.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 10.1 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 9.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.1 | 8.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 7.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 7.6 | GO:0042651 | thylakoid membrane(GO:0042651) |
| 0.0 | 7.6 | GO:0009526 | plastid envelope(GO:0009526) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.9 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 12.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.9 | 8.5 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.2 | 8.5 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 8.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 7.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 6.7 | GO:0080043 | quercetin 3-O-glucosyltransferase activity(GO:0080043) |
| 0.3 | 6.2 | GO:0008559 | xenobiotic-transporting ATPase activity(GO:0008559) |
| 0.0 | 5.9 | GO:0020037 | heme binding(GO:0020037) |
| 0.1 | 5.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.6 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 1.3 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.4 | 1.2 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.2 | 1.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.5 | 1.0 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.3 | 1.0 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 1.0 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.9 | PID ATR PATHWAY | ATR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 4.7 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.3 | 2.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.7 | 2.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.4 | 2.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.6 | 1.8 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
| 0.3 | 1.6 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.4 | 1.2 | REACTOME INWARDLY RECTIFYING K CHANNELS | Genes involved in Inwardly rectifying K+ channels |
| 0.4 | 1.2 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.2 | 1.0 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 1.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |