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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G01250

Z-value: 0.46

Transcription factors associated with AT1G01250

Gene Symbol Gene ID Gene Info
AT1G01250
AT1G01250 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G01250arTal_v1_Chr1_-_105330_105330-0.525.6e-02Click!

Activity profile of AT1G01250 motif

Sorted Z-values of AT1G01250 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_14304921 0.54 AT4G29020.2
AT4G29020.1
AT4G29020
glycine-rich protein
Chr3_-_6258426 0.53 AT3G18250.1
AT3G18250
Putative membrane lipoprotein
Chr3_-_8064649 0.51 AT3G22800.1
AT3G22800
Leucine-rich repeat (LRR) family protein
Chr2_-_16237280 0.47 AT2G38870.1
AT2G38870
Serine protease inhibitor, potato inhibitor I-type family protein
Chr1_+_10897925 0.46 AT1G30720.1
AT1G30720
FAD-binding Berberine family protein
Chr4_+_7304323 0.46 AT4G12290.2
AT4G12290
Copper amine oxidase family protein
Chr4_-_16168711 0.45 AT4G33660.1
AT4G33660
cysteine-rich TM module stress tolerance protein
Chr3_+_11252807 0.45 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr4_+_7303985 0.44 AT4G12290.1
AT4G12290
Copper amine oxidase family protein
Chr1_+_3999157 0.44 AT1G11850.2
AT1G11850.4
AT1G11850.3
AT1G11850.1
AT1G11850
transmembrane protein
Chr4_+_17388649 0.41 AT4G36900.1
RAP2.10
related to AP2 10
Chr3_-_18863397 0.41 AT3G50750.1
BEH1
BES1/BZR1 homolog 1
Chr1_+_27308513 0.40 AT1G72520.1
LOX4
PLAT/LH2 domain-containing lipoxygenase family protein
Chr1_+_27736546 0.40 AT1G73750.2
AT1G73750.1
AT1G73750
alpha/beta hydrolase family protein
Chr5_-_16195751 0.39 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr2_+_17886101 0.39 AT2G43010.1
AT2G43010.3
AT2G43010.4
PIF4
phytochrome interacting factor 4
Chr2_-_761013 0.38 AT2G02710.2
AT2G02710.3
AT2G02710.4
AT2G02710.1
PLPB
PAS/LOV protein B
Chr5_-_834289 0.36 AT5G03380.2
AT5G03380
Heavy metal transport/detoxification superfamily protein
Chr2_-_6920319 0.35 AT2G15880.1
AT2G15880
Leucine-rich repeat (LRR) family protein
Chr5_-_834549 0.35 AT5G03380.1
AT5G03380
Heavy metal transport/detoxification superfamily protein
Chr1_+_11797330 0.34 AT1G32630.1
AT1G32630.2
AT1G32630
FAM50A-like protein
Chr5_-_3024756 0.34 AT5G09740.2
AT5G09740.1
HAM2
histone acetyltransferase of the MYST family 2
Chr2_+_17886798 0.33 AT2G43010.5
PIF4
phytochrome interacting factor 4
Chr5_-_26804249 0.32 AT5G67180.1
AT5G67180.3
AT5G67180.4
AT5G67180.2
TOE3
target of early activation tagged (EAT) 3
Chr4_+_8344349 0.32 AT4G14540.1
NF-YB3
nuclear factor Y, subunit B3
Chr2_-_14778933 0.31 AT2G35060.4
AT2G35060.2
AT2G35060.3
AT2G35060.1
KUP11
K+ uptake permease 11
Chr2_+_17886427 0.31 AT2G43010.2
PIF4
phytochrome interacting factor 4
Chr2_-_11685342 0.30 AT2G27310.1
AT2G27310
F-box family protein
Chr4_-_14880331 0.29 AT4G30430.1
TET9
tetraspanin9
Chr1_-_9956960 0.28 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
Chr2_-_14211693 0.28 AT2G33550.1
AT2G33550
Homeodomain-like superfamily protein
Chr4_+_11907355 0.27 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family
Chr3_-_21346235 0.27 AT3G57640.1
AT3G57640
Protein kinase superfamily protein
Chr1_+_10900681 0.27 AT1G30730.1
AT1G30730
FAD-binding Berberine family protein
Chr4_-_13958107 0.27 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_3950602 0.27 AT4G06700.1
AT4G06700

Chr2_+_19109513 0.26 AT2G46535.1
AT2G46535
hypothetical protein
Chr1_-_2282828 0.25 AT1G07430.1
HAI2
highly ABA-induced PP2C protein 2
Chr1_-_18945812 0.24 AT1G51140.1
FBH3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_5461398 0.24 AT4G08580.1
AT4G08580.2
AT4G08580
microfibrillar-associated protein-like protein
Chr2_-_15084559 0.24 AT2G35930.1
PUB23
plant U-box 23
Chr4_+_17228773 0.24 AT4G36510.1
AT4G36510
hypothetical protein
Chr4_+_14418556 0.24 AT4G29240.1
AT4G29240.2
AT4G29240
Leucine-rich repeat (LRR) family protein
Chr3_-_3059148 0.24 AT3G09940.2
AT3G09940.1
MDHAR
monodehydroascorbate reductase
Chr4_+_9467512 0.24 AT4G16820.1
PLA-I%7Bbeta]2
alpha/beta-Hydrolases superfamily protein
Chr3_+_7029145 0.23 AT3G20140.1
CYP705A23
cytochrome P450, family 705, subfamily A, polypeptide 23
Chr1_+_2032338 0.23 AT1G06640.3
AT1G06640.2
AT1G06640
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_-_10487749 0.23 AT2G24650.1
AT2G24650.7
AT2G24650.2
AT2G24650.5
AT2G24650.4
AT2G24650.3
AT2G24650
B3 domain-containing protein REM13
Chr1_+_26464226 0.23 AT1G70270.2
AT1G70270.1
AT1G70270
transcription factor
Chr2_+_8093220 0.23 AT2G18670.1
AT2G18670
RING/U-box superfamily protein
Chr1_+_2031626 0.23 AT1G06640.1
AT1G06640
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_+_3069090 0.23 AT3G09980.1
AT3G09980
ankyrin repeat 30A-like protein (DUF662)
Chr5_-_24975632 0.23 AT5G62170.1
AT5G62170.2
AT5G62170.4
AT5G62170.3
TRM25
LOW protein: M-phase inducer phosphatase-like protein
Chr5_+_26207654 0.23 AT5G65580.1
AT5G65580
transmembrane protein
Chr5_+_1503232 0.22 AT5G05090.1
AT5G05090
Homeodomain-like superfamily protein
Chr4_-_10762104 0.22 AT4G19800.1
AT4G19800
Glycosyl hydrolase family protein with chitinase insertion domain-containing protein
Chr5_-_24903131 0.22 AT5G61990.1
AT5G61990
Pentatricopeptide repeat (PPR) superfamily protein
Chr2_+_11985687 0.22 AT2G28120.1
AT2G28120
Major facilitator superfamily protein
Chr5_-_21607297 0.22 AT5G53270.1
AT5G53270
Seed maturation protein
Chr3_+_231610 0.21 AT3G01610.1
AT3G01610.2
CDC48C
cell division cycle 48C
Chr5_+_8005097 0.21 AT5G23730.1
RUP2
Transducin/WD40 repeat-like superfamily protein
Chr4_-_1604628 0.21 AT4G03600.1
AT4G03600
pyrroline-5-carboxylate reductase
Chr2_-_12685145 0.21 AT2G29670.2
AT2G29670.1
AT2G29670
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_19913515 0.21 AT3G53730.1
AT3G53730
Histone superfamily protein
Chr5_-_23009709 0.20 AT5G56880.1
AT5G56880
hypothetical protein
Chr4_-_82040 0.20 AT4G00190.1
PME38
pectin methylesterase 38
Chr5_+_16468327 0.20 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr3_-_10587759 0.19 AT3G28330.1
AT3G28330
F-box family protein-like protein
Chr1_-_26415258 0.19 AT1G70140.1
FH8
formin 8
Chr4_+_18302775 0.19 AT4G39360.1
AT4G39360
hypothetical protein
Chr5_+_21048191 0.18 AT5G51800.1
AT5G51800
Protein kinase superfamily protein
Chr5_+_13233357 0.18 AT5G34930.2
AT5G34930.1
AT5G34930.3
AT5G34930
arogenate dehydrogenase
Chr2_-_3379885 0.18 AT2G07704.1
AT2G07704

Chr3_+_21238223 0.18 AT3G57400.1
AT3G57400
transmembrane protein
Chr5_-_15514305 0.17 AT5G38740.1
AGL77
AGAMOUS-like 77
Chr4_-_144561 0.17 AT4G00330.1
CRCK2
calmodulin-binding receptor-like cytoplasmic kinase 2
Chr1_+_19812087 0.17 AT1G53163.1
AT1G53163
membrane-associated kinase regulator
Chr1_-_1349478 0.17 AT1G04800.1
AT1G04800
glycine-rich protein
Chr1_-_27155793 0.17 AT1G72160.1
AT1G72160
Sec14p-like phosphatidylinositol transfer family protein
Chr4_+_5847312 0.17 AT4G09180.1
FBH2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_8165214 0.17 AT4G14150.1
PAKRP1
phragmoplast-associated kinesin-related protein 1
Chr2_-_7685176 0.16 AT2G17695.2
AT2G17695.1
AT2G17695.3
AT2G17695
outer envelope protein
Chr3_-_22658582 0.16 AT3G61200.1
AT3G61200
Thioesterase superfamily protein
Chr1_-_612324 0.16 AT1G02790.1
PGA4
polygalacturonase 4
Chr3_+_2534776 0.16 AT3G07960.1
AT3G07960.3
AT3G07960.2
AT3G07960.4
PIP5K6
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr2_-_15925887 0.16 AT2G38060.2
AT2G38060.1
PHT4%3B2
phosphate transporter 4;2
Chr3_+_6965595 0.16 AT3G19990.2
AT3G19990.1
AT3G19990
E3 ubiquitin-protein ligase
Chr4_-_3989259 0.16 AT4G06710.1
AT4G06710

Chr4_-_145719 0.16 AT4G00330.2
CRCK2
calmodulin-binding receptor-like cytoplasmic kinase 2
Chr4_-_12923337 0.16 AT4G25225.1
AT4G25225.2
AT4G25225
transmembrane protein
Chr1_+_4153641 0.16 AT1G12240.1
ATBETAFRUCT4
Glycosyl hydrolases family 32 protein
Chr5_-_26810116 0.16 AT5G67190.1
DEAR2
DREB and EAR motif protein 2
Chr5_-_21095702 0.15 AT5G51910.1
AT5G51910
TCP family transcription factor
Chr3_+_4995426 0.15 AT3G14850.2
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr2_+_9937792 0.15 AT2G23340.1
DEAR3
DREB and EAR motif protein 3
Chr1_+_7313901 0.15 AT1G20970.1
AT1G20970
calponin-like domain protein
Chr1_+_30415817 0.15 AT1G80960.2
AT1G80960.3
AT1G80960
F-box and Leucine Rich Repeat domains containing protein
Chr3_+_6710349 0.15 AT3G19370.3
AT3G19370.1
AT3G19370
filament-like protein (DUF869)
Chr4_+_446978 0.15 AT4G01026.1
PYL7
PYR1-like 7
Chr1_+_27215787 0.15 AT1G72290.1
AT1G72290
Kunitz family trypsin and protease inhibitor protein
Chr3_-_5777841 0.15 AT3G16920.1
CTL2
chitinase-like protein
Chr4_+_17540490 0.15 AT4G37260.1
MYB73
myb domain protein 73
Chr4_-_1066571 0.15 AT4G02420.1
AT4G02420
Concanavalin A-like lectin protein kinase family protein
Chr5_-_24501770 0.14 AT5G60900.1
RLK1
receptor-like protein kinase 1
Chr5_-_21095891 0.14 AT5G51910.2
AT5G51910
TCP family transcription factor
Chr3_+_6710720 0.14 AT3G19370.2
AT3G19370
filament-like protein (DUF869)
Chr5_-_11721564 0.14 AT5G31804.1
AT5G31804

Chr1_+_20061405 0.14 AT1G53730.2
AT1G53730.1
SRF6
STRUBBELIG-receptor family 6
Chr1_+_30415123 0.14 AT1G80960.1
AT1G80960
F-box and Leucine Rich Repeat domains containing protein
Chr3_+_21370757 0.14 AT3G57670.1
NTT
C2H2-type zinc finger family protein
Chr2_+_3484627 0.14 AT2G07806.3
AT2G07806
hypothetical protein
Chr5_-_486434 0.14 AT5G02320.1
AT5G02320.2
MYB3R-5
myb domain protein 3r-5
Chr3_+_4995941 0.14 AT3G14850.1
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr4_+_9876172 0.14 AT4G17770.2
AT4G17770.1
TPS5
trehalose phosphatase/synthase 5
Chr5_-_8916856 0.14 AT5G25610.1
RD22
BURP domain-containing protein
Chr4_-_7493080 0.14 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr5_-_485664 0.14 AT5G02320.3
MYB3R-5
myb domain protein 3r-5
Chr5_+_9803647 0.14 AT5G27690.1
AT5G27690
Heavy metal transport/detoxification superfamily protein
Chr4_-_14619573 0.14 AT4G29900.2
AT4G29900.1
ACA10
autoinhibited Ca(2+)-ATPase 10
Chr5_+_3849283 0.14 AT5G11940.1
AT5G11940
Subtilase family protein
Chr2_+_3484830 0.14 AT2G07806.1
AT2G07806.2
AT2G07806
hypothetical protein
Chr1_+_30415987 0.13 AT1G80960.5
AT1G80960.4
AT1G80960
F-box and Leucine Rich Repeat domains containing protein
Chr1_+_30416608 0.13 AT1G80960.6
AT1G80960
F-box and Leucine Rich Repeat domains containing protein
Chr3_+_13581147 0.13 AT3G33055.1
AT3G33055

Chr1_-_1307973 0.13 AT1G04680.1
AT1G04680
Pectin lyase-like superfamily protein
Chr1_-_30352208 0.13 AT1G80760.1
NIP6%3B1
NOD26-like intrinsic protein 6;1
Chr5_-_22364772 0.13 AT5G55100.1
AT5G55100.9
AT5G55100.10
AT5G55100.6
AT5G55100.5
AT5G55100.3
AT5G55100.4
AT5G55100.8
AT5G55100.7
AT5G55100.2
AT5G55100
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Chr2_+_17747781 0.13 AT2G42610.1
AT2G42610.2
LSH10
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Chr5_+_324428 0.13 AT5G01840.1
OFP1
ovate family protein 1
Chr2_-_10487571 0.13 AT2G24650.6
AT2G24650
B3 domain-containing protein REM13
Chr4_-_7174439 0.13 AT4G11950.1
AT4G11950
transmembrane protein, putative (DUF1191)
Chr5_-_26419363 0.13 AT5G66055.2
AT5G66055.1
AKRP
ankyrin repeat protein
Chr3_+_8641181 0.13 AT3G23920.1
BAM1
beta-amylase 1
Chr5_-_315405 0.13 AT5G01820.1
SR1
serine/threonine protein kinase 1
Chr3_-_5778052 0.13 AT3G16920.2
CTL2
chitinase-like protein
Chr1_+_2927502 0.13 AT1G09070.1
SRC2
soybean gene regulated by cold-2
Chr2_-_1017222 0.13 AT2G03340.1
WRKY3
WRKY DNA-binding protein 3
Chr1_+_20793720 0.13 AT1G55640.1
PRA1.G1
prenylated RAB acceptor 1.G1
Chr5_+_1192917 0.13 AT5G04280.5
AtRZ-1c
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
Chr3_-_1002595 0.13 AT3G03890.1
AT3G03890
FMN binding protein
Chr4_+_17089934 0.12 AT4G36110.1
SAUR9
SAUR-like auxin-responsive protein family
Chr2_-_2983602 0.12 AT2G07180.2
AT2G07180.1
AT2G07180
Protein kinase superfamily protein
Chr5_+_2063414 0.12 AT5G06700.1
AT5G06700
trichome birefringence-like protein (DUF828)
Chr2_+_306251 0.12 AT2G01680.1
AT2G01680
Ankyrin repeat family protein
Chr5_-_15510713 0.12 AT5G38720.3
AT5G38720.1
AT5G38720
ribosomal RNA-processing 7 protein
Chr4_-_14592825 0.12 AT4G29800.2
PLP8
PATATIN-like protein 8
Chr4_+_14579563 0.12 AT4G29780.1
AT4G29780
nuclease
Chr3_+_9845334 0.12 AT3G26770.1
AT3G26770
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_28857250 0.12 AT1G76870.1
AT1G76870
transcription factor
Chr1_+_11945250 0.12 AT1G32960.1
SBT3.3
Subtilase family protein
Chr5_-_23200318 0.11 AT5G57260.1
CYP71B10
cytochrome P450, family 71, subfamily B, polypeptide 10
Chr1_+_4274531 0.11 AT1G12550.1
HPR3
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Chr1_-_7040231 0.11 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr5_+_12079528 0.11 AT5G32450.1
AT5G32450
RNA binding (RRM/RBD/RNP motifs) family protein
Chr3_+_6536534 0.11 AT3G18950.1
AT3G18950
Transducin/WD40 repeat-like superfamily protein
Chr3_-_1002083 0.11 AT3G03890.2
AT3G03890
FMN binding protein
Chr1_+_1086170 0.11 AT1G04160.2
AT1G04160.1
XIB
myosin XI B
Chr4_+_6374734 0.11 AT4G10270.1
AT4G10270
Wound-responsive family protein
Chr1_+_21241579 0.11 AT1G56670.1
AT1G56670.2
AT1G56670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_-_10988924 0.11 AT2G25760.2
AT2G25760
Protein kinase family protein
Chr5_+_26430071 0.11 AT5G66110.2
AT5G66110.1
AT5G66110.3
HIPP27
Heavy metal transport/detoxification superfamily protein
Chr2_+_10072057 0.11 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr4_-_1178489 0.11 AT4G02670.1
AT4G02670.2
IDD12
indeterminate(ID)-domain 12
Chr5_-_2055485 0.11 AT5G06670.1
AT5G06670.5
AT5G06670.8
AT5G06670.3
AT5G06670.2
AT5G06670.7
AT5G06670.4
AT5G06670
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_16815310 0.11 AT5G42050.1
AT5G42050
DCD (Development and Cell Death) domain protein
Chr5_-_22363653 0.11 AT5G55100.11
AT5G55100.12
AT5G55100
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Chr5_+_1192259 0.11 AT5G04280.2
AT5G04280.1
AT5G04280.3
AT5G04280.4
AtRZ-1c
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
Chr4_-_18390797 0.11 AT4G39600.2
AT4G39600
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_10989117 0.11 AT2G25760.1
AT2G25760
Protein kinase family protein
Chr5_-_15510424 0.11 AT5G38720.2
AT5G38720
ribosomal RNA-processing 7 protein
Chr1_-_6860376 0.10 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr2_-_14081971 0.10 AT2G33230.1
YUC7
YUCCA 7
Chr1_-_6859908 0.10 AT1G19835.2
AT1G19835
filament-like protein (DUF869)
Chr1_-_6562786 0.10 AT1G19000.1
AT1G19000.2
AT1G19000
Homeodomain-like superfamily protein
Chr4_+_10218137 0.10 AT4G18530.3
AT4G18530
lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)
Chr5_-_1894124 0.10 AT5G06250.2
AT5G06250.1
AT5G06250.3
AT5G06250.4
AT5G06250.5
DPA4
AP2/B3-like transcriptional factor family protein
Chr5_-_1145008 0.10 AT5G04160.1
AT5G04160
Nucleotide-sugar transporter family protein
Chr1_-_6860059 0.10 AT1G19835.5
AT1G19835
filament-like protein (DUF869)
Chr1_-_20357879 0.10 AT1G54500.1
AT1G54500
Rubredoxin-like superfamily protein
Chr4_+_16855825 0.10 AT4G35490.1
AT4G35490.2
MRPL11
mitochondrial ribosomal protein L11
Chr4_-_15646844 0.10 AT4G32410.1
CESA1
cellulose synthase 1
Chr5_+_17810477 0.10 AT5G44220.1
AT5G44220
F-box family protein
Chr4_+_13653579 0.10 AT4G27260.1
WES1
Auxin-responsive GH3 family protein
Chr4_+_13138957 0.10 AT4G25840.1
GPP1
glycerol-3-phosphatase 1
Chr2_-_3646073 0.10 AT2G09187.1
AT2G09187

Chr5_-_2275990 0.10 AT5G07250.2
AT5G07250.1
RBL3
RHOMBOID-like protein 3
Chr5_-_24932686 0.10 AT5G62070.1
IQD23
IQ-domain 23
Chr4_+_10217338 0.09 AT4G18530.1
AT4G18530.2
AT4G18530
lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)
Chr1_-_28804858 0.09 AT1G76730.1
COG0212
NagB/RpiA/CoA transferase-like superfamily protein
Chr5_+_19381519 0.09 AT5G47860.1
AT5G47860
Gut esterase (DUF1350)
Chr3_-_955212 0.09 AT3G03776.3
AT3G03776.1
AT3G03776.2
AT3G03776
hydroxyproline-rich glycoprotein family protein
Chr3_+_1161366 0.09 AT3G04380.1
AT3G04380.3
AT3G04380.2
AT3G04380.6
AT3G04380.5
AT3G04380.4
SUVR4
SET-domain containing protein lysine methyltransferase family protein
Chr3_-_3663986 0.09 AT3G11591.1
AT3G11591
bric-a-brac protein
Chr5_+_24620144 0.09 AT5G61200.3
AT5G61200
myosin heavy chain-like protein
Chr2_-_10697175 0.09 AT2G25130.1
AT2G25130
ARM repeat superfamily protein
Chr1_-_13125263 0.09 AT1G35580.3
AT1G35580.1
AT1G35580.2
CINV1
cytosolic invertase 1
Chr3_-_21030618 0.09 AT3G56770.2
AT3G56770.1
AT3G56770
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_17893067 0.09 AT5G44410.1
AT5G44410
FAD-binding Berberine family protein
Chr3_+_8410287 0.09 AT3G23450.2
AT3G23450.4
AT3G23450.3
AT3G23450
transmembrane protein
Chr5_+_20351342 0.09 AT5G50020.1
AT5G50020
DHHC-type zinc finger family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G01250

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.1 0.2 GO:0006571 tyrosine biosynthetic process(GO:0006571)
0.1 0.4 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 1.0 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.1 0.2 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.0 0.2 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.2 GO:0000256 allantoin catabolic process(GO:0000256)
0.0 0.2 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.4 GO:0080086 stamen filament development(GO:0080086)
0.0 0.2 GO:0000912 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.0 0.1 GO:0010480 microsporocyte differentiation(GO:0010480)
0.0 0.5 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.1 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.0 0.4 GO:0046348 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.1 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.0 0.1 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.0 0.1 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0 0.1 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.1 GO:0019401 alditol biosynthetic process(GO:0019401)
0.0 0.2 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.0 GO:0042787 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.0 0.2 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.1 GO:0043446 cellular alkane metabolic process(GO:0043446)
0.0 0.3 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.0 0.1 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.2 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.1 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.1 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 0.1 GO:0010358 leaf shaping(GO:0010358)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 0.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.0 0.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 0.5 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.1 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.0 0.5 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.1 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 0.1 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.0 0.1 GO:0004001 adenosine kinase activity(GO:0004001)
0.0 0.1 GO:0052578 alpha-farnesene synthase activity(GO:0052578)
0.0 0.2 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.1 GO:0004359 glutaminase activity(GO:0004359)
0.0 0.2 GO:0004575 sucrose alpha-glucosidase activity(GO:0004575)
0.0 0.1 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.0 0.2 GO:0008061 chitin binding(GO:0008061)
0.0 0.2 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.1 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.1 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 0.2 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.1 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.2 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.2 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation