avrg: A549 cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
---|---|
CoV002-CoV2-1-indexG4_S4 | 01_SARS-CoV-2_infected_A549 |
CoV002-CoV2-2-indexG5_S5 | 01_SARS-CoV-2_infected_A549 |
CoV002-CoV2-3-indexG6_S6 | 01_SARS-CoV-2_infected_A549 |
CoV002-mock1-indexG1_S1 | 02_mock_A549 |
CoV002-mock2-indexG2_S2 | 02_mock_A549 |
CoV002-mock3-indexG3_S3 | 02_mock_A549 |
Motif name | Z-value | Associated genes | Profile | Logo |
---|---|---|---|---|
IRF2_STAT2_IRF8_IRF1 | 17.30 |
|
![]() |
![]() |
IRF9 | 12.51 |
|
![]() |
![]() |
IRF6_IRF4_IRF5 | 10.46 |
|
![]() |
![]() |
IRF3 | 7.11 |
|
![]() |
![]() |
SP1 | 3.36 |
|
![]() |
![]() |
IRF7 | 3.31 |
|
![]() |
![]() |
SMAD1 | 3.22 |
|
![]() |
![]() |
CEBPA | 2.99 |
|
![]() |
![]() |
RELA | 2.97 |
|
![]() |
![]() |
NFE2L1 | 2.69 |
|
![]() |
![]() |
In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
Sample name | Condition | Replicate/Batch |
---|---|---|
01_SARS-CoV-2_infected_A549 | ||
02_mock_A549 |