avrg: A549 cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
| Sample | Condition |
|---|---|
| CoV002-CoV2-1-indexG4_S4 | 01_SARS-CoV-2_infected_A549 |
| CoV002-CoV2-2-indexG5_S5 | 01_SARS-CoV-2_infected_A549 |
| CoV002-CoV2-3-indexG6_S6 | 01_SARS-CoV-2_infected_A549 |
| CoV002-mock1-indexG1_S1 | 02_mock_A549 |
| CoV002-mock2-indexG2_S2 | 02_mock_A549 |
| CoV002-mock3-indexG3_S3 | 02_mock_A549 |
| Motif name | Z-value | Associated genes | Profile | Logo |
|---|---|---|---|---|
| IRF2_STAT2_IRF8_IRF1 | 17.30 |
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| IRF9 | 12.51 |
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| IRF6_IRF4_IRF5 | 10.46 |
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| IRF3 | 7.11 |
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| SP1 | 3.36 |
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| IRF7 | 3.31 |
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| SMAD1 | 3.22 |
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| CEBPA | 2.99 |
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| RELA | 2.97 |
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| NFE2L1 | 2.69 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
| Sample name | Condition | Replicate/Batch |
|---|---|---|
| 01_SARS-CoV-2_infected_A549 | ||
| 02_mock_A549 |