hg19_v2_chr17_-_33448468_33448513	0.0141457	UGACCUA	ENST00000591723.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein  	ENST00000587405.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000593039.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein
hg19_v2_chr1_+_151043070_151043110	0.0137287	UGACCUA	ENST00000368918.3|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2 	ENST00000368917.1|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2
hg19_v2_chr17_+_38024417_38024478	0.0109315	UGACCUA	ENST00000348931.4|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000583811.1|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000584588.1|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000377940.3|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2
hg19_v2_chr5_+_42756903_42756963	0.0107828	UGACCUA	ENST00000361970.5|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152 	ENST00000388827.4|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152
hg19_v2_chr19_-_49576198_49576198	0.00935386	UGACCUA	ENST00000221444.1|KCNA7|ENSG00000104848.1|potassium voltage-gated channel, shaker-related subfamily, member 7
hg19_v2_chr3_-_9291063_9291136	0.00900568	UGACCUA	ENST00000383836.3|SRGAP3|ENSG00000196220.11|SLIT-ROBO Rho GTPase activating protein 3
hg19_v2_chr11_-_64684672_64684722	0.00870366	UGACCUA	ENST00000377264.3|ATG2A|ENSG00000110046.8|autophagy related 2A 	ENST00000421419.2|ATG2A|ENSG00000110046.8|autophagy related 2A
hg19_v2_chr1_+_181057638_181057692	0.00833756	UGACCUA	ENST00000367577.4|IER5|ENSG00000162783.8|immediate early response 5
hg19_v2_chr7_+_97736197_97736211	0.00819567	UGACCUA	ENST00000297293.5|LMTK2|ENSG00000164715.5|lemur tyrosine kinase 2
hg19_v2_chr12_+_85673868_85673885	0.00733305	UGACCUA	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr12_+_48592134_48592170	0.00690452	UGACCUA	ENST00000595310.1|DKFZP779L1853|ENSG00000269514.1|DKFZP779L1853
hg19_v2_chr6_-_42419649_42419789	0.00676586	UGACCUA	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr20_-_36156125_36156250	0.00675415	UGACCUA	ENST00000397135.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000397137.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr10_-_79686284_79686527	0.00647884	UGACCUA	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chr5_-_140998616_140998639	0.00623314	UGACCUA	ENST00000389054.3|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000398562.2|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000389057.5|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000398566.3|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000398557.4|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000253811.6|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1
hg19_v2_chr9_+_137533615_137533660	0.00576557	UGACCUA	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr16_-_73082274_73082274	0.00558512	UGACCUA	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr9_-_127533519_127533576	0.00557026	UGACCUA	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr2_-_25475120_25475180	0.00536004	UGACCUA	ENST00000380746.4|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha 	ENST00000402667.1|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha
hg19_v2_chr17_+_27717415_27717618	0.00518704	UGACCUA	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr11_+_119076745_119076792	0.00501605	UGACCUA	ENST00000264033.4|CBL|ENSG00000110395.4|Cbl proto-oncogene, E3 ubiquitin protein ligase
hg19_v2_chr14_+_100705322_100705360	0.00500313	UGACCUA	ENST00000262238.4|YY1|ENSG00000100811.6|YY1 transcription factor
hg19_v2_chr22_-_22221900_22221970	0.00498921	UGACCUA	ENST00000215832.6|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1 	ENST00000398822.3|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1
hg19_v2_chr1_+_150122034_150122170	0.00474177	UGACCUA	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr15_+_75940218_75940298	0.00472337	UGACCUA	ENST00000308527.5|SNX33|ENSG00000173548.8|sorting nexin 33
hg19_v2_chr3_-_114790179_114790222	0.00466062	UGACCUA	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr9_-_35665165_35665284	0.00417357	UGACCUA	ENST00000343259.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39 	ENST00000378387.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39
hg19_v2_chr1_+_101702417_101702481	0.00401134	UGACCUA	ENST00000305352.6|S1PR1|ENSG00000170989.8|sphingosine-1-phosphate receptor 1
hg19_v2_chr12_+_862089_862343	0.00392908	UGACCUA	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chr7_+_28452130_28452154	0.00389848	UGACCUA	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr8_+_61591337_61591393	0.00388603	UGACCUA	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr3_-_32022733_32022809	0.00372926	UGACCUA	ENST00000438237.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10 	ENST00000396556.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10
hg19_v2_chr3_-_123603137_123603203	0.00362472	UGACCUA	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr17_-_56595196_56595266	0.00351974	UGACCUA	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr17_+_2699697_2699776	0.00342799	UGACCUA	ENST00000254695.8|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000366401.4|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000542807.1|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2
hg19_v2_chr3_+_11314099_11314122	0.00332897	UGACCUA	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr15_+_89631381_89631391	0.0032541	UGACCUA	ENST00000352732.5|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr2_-_26101374_26101389	0.00311117	UGACCUA	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr11_+_118754475_118754552	0.0029948	UGACCUA	ENST00000292174.4|CXCR5|ENSG00000160683.4|chemokine (C-X-C motif) receptor 5
hg19_v2_chr2_+_109204909_109204928	0.00296313	UGACCUA	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr1_+_28995231_28995250	0.00292554	UGACCUA	ENST00000373816.1|GMEB1|ENSG00000162419.8|glucocorticoid modulatory element binding protein 1
hg19_v2_chr17_+_39845134_39845145	0.00241833	UGACCUA	ENST00000591776.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1 	ENST00000469257.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1
hg19_v2_chr1_+_24069642_24069646	0.00226184	UGACCUA	ENST00000418390.2|TCEB3|ENSG00000011007.8|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)
hg19_v2_chr12_-_14133053_14133159	0.0022452	UGACCUA	ENST00000609686.1|GRIN2B|ENSG00000273079.1|glutamate receptor, ionotropic, N-methyl D-aspartate 2B
hg19_v2_chr5_+_173315283_173315335	0.00213121	UGACCUA	ENST00000265085.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chrX_+_23352133_23352229	0.00197614	UGACCUA	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr9_+_12693336_12693460	0.00195964	UGACCUA	ENST00000381137.2|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1 	ENST00000388918.5|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1
hg19_v2_chr4_+_184020398_184020463	0.00176651	UGACCUA	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr1_+_10271674_10271674	0.00169133	UGACCUA	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr17_-_8279977_8280032	0.00168828	UGACCUA	ENST00000396267.1|KRBA2|ENSG00000184619.3|KRAB-A domain containing 2
hg19_v2_chr22_-_50746027_50746082	0.00154446	UGACCUA	ENST00000425954.1|PLXNB2|ENSG00000196576.10|plexin B2 	ENST00000449103.1|PLXNB2|ENSG00000196576.10|plexin B2
hg19_v2_chr3_+_38495333_38495422	0.00153679	UGACCUA	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr10_+_73975742_73975830	0.00152897	UGACCUA	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr10_-_99052382_99052413	0.00143303	UGACCUA	ENST00000453547.2|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000466484.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000316676.8|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358308.3|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358531.4|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr14_+_73704201_73704277	0.00143029	UGACCUA	ENST00000340738.5|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000427855.1|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000381166.3|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein
hg19_v2_chr5_-_73937244_73937274	0.00138371	UGACCUA	ENST00000302351.4|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000510316.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000508331.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain)
hg19_v2_chr11_+_35684288_35684353	0.00137359	UGACCUA	ENST00000299413.5|TRIM44|ENSG00000166326.5|tripartite motif containing 44
hg19_v2_chr18_+_54318616_54318640	0.00127446	UGACCUA	ENST00000254442.3|WDR7|ENSG00000091157.9|WD repeat domain 7
hg19_v2_chrX_-_129402857_129402880	0.00125182	UGACCUA	ENST00000447817.1|ZNF280C|ENSG00000056277.11|zinc finger protein 280C 	ENST00000370978.4|ZNF280C|ENSG00000056277.11|zinc finger protein 280C
hg19_v2_chr6_+_123317116_123317260	0.00109564	UGACCUA	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr17_-_33416231_33416338	0.000983727	UGACCUA	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr16_+_67596310_67596353	0.000920608	UGACCUA	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr13_+_58206655_58206655	0.000860649	UGACCUA	ENST00000377918.3|PCDH17|ENSG00000118946.7|protocadherin 17
hg19_v2_chr20_+_42086525_42086568	0.000840865	UGACCUA	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr4_+_172734548_172734654	0.000808862	UGACCUA	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr3_+_171758344_171758358	0.000770439	UGACCUA	ENST00000336824.4|FNDC3B|ENSG00000075420.8|fibronectin type III domain containing 3B 	ENST00000423424.1|FNDC3B|ENSG00000075420.8|fibronectin type III domain containing 3B
hg19_v2_chr21_-_39288743_39288765	0.000465418	UGACCUA	ENST00000609713.1|KCNJ6|ENSG00000157542.8|potassium inwardly-rectifying channel, subfamily J, member 6
hg19_v2_chr21_-_36260980_36261011	0.000446298	UGACCUA	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr18_+_49866496_49866548	0.000193403	UGACCUA	ENST00000442544.2|DCC|ENSG00000187323.7|deleted in colorectal carcinoma
hg19_v2_chr8_-_93115445_93115462	0.000117437	UGACCUA	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr1_-_100715372_100715400	0.000104025	UGACCUA	ENST00000370131.3|DBT|ENSG00000137992.10|dihydrolipoamide branched chain transacylase E2 	ENST00000370132.4|DBT|ENSG00000137992.10|dihydrolipoamide branched chain transacylase E2
hg19_v2_chr1_+_84543734_84543775	7.67629e-05	UGACCUA	ENST00000370689.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
