hg19_v2_chr4_+_175204865_175204915	0.361692	SOX9	ENST00000505124.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr16_+_82660635_82660698	0.327855	SOX9	ENST00000567445.1|CDH13|ENSG00000140945.11|cadherin 13 	ENST00000446376.2|CDH13|ENSG00000140945.11|cadherin 13
hg19_v2_chr3_-_122283424_122283498	0.315387	SOX9	ENST00000477522.2|PARP9|ENSG00000138496.12|poly (ADP-ribose) polymerase family, member 9 	ENST00000360356.2|PARP9|ENSG00000138496.12|poly (ADP-ribose) polymerase family, member 9
hg19_v2_chr11_+_28724129_28724184	0.276324	SOX9	ENST00000513853.1|RP11-115J23.1|ENSG00000249867.1|RP11-115J23.1
hg19_v2_chr14_+_24641062_24641246	0.267089	SOX9	ENST00000311457.3|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000557806.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000559919.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr1_+_26437631_26437665	0.266623	SOX9	ENST00000444713.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr7_+_77167343_77167369	0.259726	SOX9	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr7_+_77167376_77167395	0.243209	SOX9	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr17_-_14683517_14683523	0.229771	SOX9	ENST00000379640.1|AC005863.1|ENSG00000205325.1|AC005863.1
hg19_v2_chr14_-_51027838_51027851	0.227393	SOX9	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr1_-_156399184_156399225	0.214393	SOX9	ENST00000368243.1|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000357975.4|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000310027.5|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000400991.2|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61
hg19_v2_chr1_-_27339317_27339375	0.206966	SOX9	ENST00000289166.5|FAM46B|ENSG00000158246.7|family with sequence similarity 46, member B
hg19_v2_chr8_+_126442563_126442624	0.206158	SOX9	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr1_+_181003067_181003149	0.195	SOX9	ENST00000434571.2|MR1|ENSG00000153029.10|major histocompatibility complex, class I-related 	ENST00000367579.3|MR1|ENSG00000153029.10|major histocompatibility complex, class I-related 	ENST00000282990.6|MR1|ENSG00000153029.10|major histocompatibility complex, class I-related 	ENST00000367580.5|MR1|ENSG00000153029.10|major histocompatibility complex, class I-related
hg19_v2_chr7_-_99774945_99775026	0.194793	SOX9	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr11_+_34654011_34654118	0.192638	SOX9	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr3_+_189507460_189507471	0.191975	SOX9	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr6_+_26183958_26184005	0.188383	SOX9	ENST00000356530.3|HIST1H2BE|ENSG00000197697.3|histone cluster 1, H2be
hg19_v2_chr19_-_17375541_17375605	0.188105	SOX9	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr11_+_110225855_110226016	0.187553	SOX9	ENST00000526605.1|RP11-347E10.1|ENSG00000254416.1|RP11-347E10.1	ENST00000526703.1|RP11-347E10.1|ENSG00000254416.1|RP11-347E10.1
hg19_v2_chr7_-_107968999_107969099	0.18654	SOX9	ENST00000456431.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr18_+_44497455_44497522	0.17025	SOX9	ENST00000592005.1|KATNAL2|ENSG00000167216.12|katanin p60 subunit A-like 2
hg19_v2_chr14_-_71276211_71276255	0.162572	SOX9	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr7_-_107968921_107968937	0.160872	SOX9	ENST00000442580.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr12_-_49463620_49463675	0.160688	SOX9	ENST00000550675.1|RHEBL1|ENSG00000167550.6|Ras homolog enriched in brain like 1
hg19_v2_chr6_+_29691198_29691241	0.156694	SOX9	ENST00000440587.2|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000434407.2|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F
hg19_v2_chr8_-_121824374_121824391	0.156208	SOX9	ENST00000517992.1|SNTB1|ENSG00000172164.9|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
hg19_v2_chr6_+_29691056_29691188	0.154465	SOX9	ENST00000414333.1|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000334668.4|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F 	ENST00000259951.7|HLA-F|ENSG00000204642.9|major histocompatibility complex, class I, F
hg19_v2_chr9_-_85882145_85882202	0.153979	SOX9	ENST00000328788.1|FRMD3|ENSG00000172159.11|FERM domain containing 3
hg19_v2_chr7_+_129015671_129015685	0.147847	SOX9	ENST00000466993.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr2_-_37501692_37501747	0.144787	SOX9	ENST00000443977.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr1_-_16539094_16539175	0.144451	SOX9	ENST00000270747.3|ARHGEF19|ENSG00000142632.12|Rho guanine nucleotide exchange factor (GEF) 19
hg19_v2_chr5_-_168006324_168006400	0.144379	SOX9	ENST00000522176.1|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr4_+_71570430_71570536	0.140466	SOX9	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr18_+_7946839_7946903	0.138219	SOX9	ENST00000578916.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr11_-_77531752_77531792	0.135099	SOX9	ENST00000440064.2|RSF1|ENSG00000048649.9|remodeling and spacing factor 1 	ENST00000528095.1|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr10_+_121578211_121578248	0.134865	SOX9	ENST00000369080.3|INPP5F|ENSG00000198825.7|inositol polyphosphate-5-phosphatase F
hg19_v2_chr11_-_65640071_65640125	0.134596	SOX9	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr8_-_66753682_66753743	0.133468	SOX9	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr9_-_74383302_74383437	0.13078	SOX9	ENST00000377066.5|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chr2_+_208576259_208576278	0.129024	SOX9	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr14_-_90421028_90421121	0.125326	SOX9	ENST00000267544.9|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000316738.7|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000538485.2|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000556609.1|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11
hg19_v2_chr16_-_15474904_15474904	0.125	SOX9	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr3_-_185826718_185826803	0.1246	SOX9	ENST00000413301.1|ETV5|ENSG00000244405.3|ets variant 5 	ENST00000421809.1|ETV5|ENSG00000244405.3|ets variant 5
hg19_v2_chr15_+_41136216_41136252	0.12411	SOX9	ENST00000562057.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1 	ENST00000344051.4|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr20_+_42543504_42543549	0.120688	SOX9	ENST00000341197.4|TOX2|ENSG00000124191.13|TOX high mobility group box family member 2
hg19_v2_chr12_+_49761147_49761167	0.119359	SOX9	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr6_-_27440460_27440505	0.119254	SOX9	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr12_+_95611569_95611608	0.118749	SOX9	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr19_-_19739321_19739366	0.118728	SOX9	ENST00000588461.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2
hg19_v2_chr4_+_54243917_54244006	0.117118	SOX9	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr8_-_95449155_95449188	0.114943	SOX9	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr4_+_54243862_54243874	0.114918	SOX9	ENST00000306932.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr20_+_60698180_60698208	0.114235	SOX9	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr9_+_4792869_4792902	0.113972	SOX9	ENST00000381750.4|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr2_+_46926326_46926452	0.113141	SOX9	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr6_-_27440837_27440912	0.110407	SOX9	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr12_-_99548524_99548550	0.110032	SOX9	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr9_-_139658965_139658975	0.109331	SOX9	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chr12_+_69633407_69633422	0.108332	SOX9	ENST00000551516.1|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr17_-_73149921_73149971	0.108044	SOX9	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chrX_+_9433289_9433334	0.107471	SOX9	ENST00000422314.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr22_-_38480100_38480159	0.106945	SOX9	ENST00000427592.1|SLC16A8|ENSG00000100156.6|solute carrier family 16 (monocarboxylate transporter), member 8
hg19_v2_chr2_+_46926048_46926095	0.106319	SOX9	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr12_+_95611516_95611527	0.10611	SOX9	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr15_-_59041954_59042006	0.104352	SOX9	ENST00000439637.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000558004.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr6_-_75915757_75915775	0.102623	SOX9	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr18_+_7946941_7946952	0.102266	SOX9	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr7_+_76751926_76751960	0.102205	SOX9	ENST00000285871.4|CCDC146|ENSG00000135205.10|coiled-coil domain containing 146 	ENST00000431197.1|CCDC146|ENSG00000135205.10|coiled-coil domain containing 146
hg19_v2_chr5_-_65018834_65018863	0.101949	SOX9	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr15_+_98503922_98503964	0.100823	SOX9	ENST00000268042.6|ARRDC4|ENSG00000140450.7|arrestin domain containing 4
hg19_v2_chr4_+_113152978_113152989	0.10062	SOX9	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr2_+_54198210_54198293	0.100391	SOX9	ENST00000607452.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type 	ENST00000422521.2|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr17_-_16472483_16472533	0.0998787	SOX9	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr8_+_98656693_98656774	0.0991764	SOX9	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr2_-_175869936_175869954	0.0990736	SOX9	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr6_-_134861089_134861168	0.0986128	SOX9	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr13_-_41593425_41593480	0.0982505	SOX9	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr7_+_134464376_134464413	0.0980251	SOX9	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_-_243418650_243418664	0.0972783	SOX9	ENST00000522995.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr20_-_17662878_17662940	0.0972456	SOX9	ENST00000377813.1|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000377807.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000360807.4|RRBP1|ENSG00000125844.11|ribosome binding protein 1 	ENST00000398782.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr5_+_138852090_138852108	0.0970614	SOX9	ENST00000593907.1|AC138517.1|ENSG00000269071.1|Uncharacterized protein
hg19_v2_chr16_+_68573116_68573228	0.0968294	SOX9	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr2_-_201828356_201828412	0.0967688	SOX9	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr4_-_83351294_83351417	0.0954303	SOX9	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr11_+_111807863_111807937	0.0948152	SOX9	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr1_+_8378140_8378187	0.0936864	SOX9	ENST00000377479.2|SLC45A1|ENSG00000162426.10|solute carrier family 45, member 1
hg19_v2_chr19_+_58790314_58790358	0.0936301	SOX9	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr13_-_107214291_107214305	0.0935786	SOX9	ENST00000375926.1|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr12_+_49761224_49761259	0.0933764	SOX9	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr1_-_198906528_198906573	0.0931833	SOX9	ENST00000432296.1|MIR181A1HG|ENSG00000229989.3|MIR181A1 host gene (non-protein coding)
hg19_v2_chr5_+_110073853_110073866	0.0920931	SOX9	ENST00000513807.1|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46 	ENST00000509442.2|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46
hg19_v2_chr11_-_76155618_76155676	0.091831	SOX9	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr17_+_40119801_40119821	0.0915275	SOX9	ENST00000585452.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr17_+_9066252_9066271	0.0898821	SOX9	ENST00000436734.1|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr1_-_184723701_184723760	0.0896274	SOX9	ENST00000367512.3|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr10_-_104953009_104953061	0.0895933	SOX9	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr4_+_41614720_41614734	0.0894043	SOX9	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr1_-_205912577_205912593	0.0890314	SOX9	ENST00000367135.3|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9 	ENST00000367134.2|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9
hg19_v2_chrX_+_135579670_135579715	0.0887537	SOX9	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr2_-_70475586_70475646	0.0885822	SOX9	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr7_-_75368248_75368265	0.0883717	SOX9	ENST00000434438.2|HIP1|ENSG00000127946.12|huntingtin interacting protein 1 	ENST00000336926.6|HIP1|ENSG00000127946.12|huntingtin interacting protein 1
hg19_v2_chr3_+_44596679_44596726	0.0879692	SOX9	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr15_+_90895471_90895572	0.0879528	SOX9	ENST00000354377.3|ZNF774|ENSG00000196391.6|zinc finger protein 774 	ENST00000379090.5|ZNF774|ENSG00000196391.6|zinc finger protein 774
hg19_v2_chr4_-_83350580_83350600	0.0873875	SOX9	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr17_+_57233087_57233146	0.0863068	SOX9	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr4_+_54243798_54243854	0.0857298	SOX9	ENST00000337488.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000358575.5|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000507922.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chrX_+_9880412_9880550	0.0856305	SOX9	ENST00000418909.2|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr1_+_209602156_209602183	0.0852508	SOX9	ENST00000429156.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000366437.3|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000603283.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000431096.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding)
hg19_v2_chr10_+_70748487_70748498	0.085105	SOX9	ENST00000361983.4|KIAA1279|ENSG00000198954.4|KIAA1279
hg19_v2_chr15_+_76629064_76629073	0.0846157	SOX9	ENST00000290759.4|ISL2|ENSG00000159556.5|ISL LIM homeobox 2
hg19_v2_chr12_+_113495492_113495503	0.0840409	SOX9	ENST00000257600.3|DTX1|ENSG00000135144.3|deltex homolog 1 (Drosophila)
hg19_v2_chr5_+_138678131_138678169	0.0837166	SOX9	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr1_-_182360498_182360541	0.0828493	SOX9	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr7_-_27219632_27219660	0.0817116	SOX9	ENST00000470747.4|RP1-170O19.20|ENSG00000257184.2|Uncharacterized protein
hg19_v2_chr19_+_44100632_44100683	0.081302	SOX9	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr1_-_205904950_205905037	0.0812989	SOX9	ENST00000340781.4|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9
hg19_v2_chr2_+_170590321_170590408	0.0797595	SOX9	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr19_-_45004556_45004581	0.0796649	SOX9	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr12_-_95945246_95945270	0.0795091	SOX9	ENST00000258499.3|USP44|ENSG00000136014.7|ubiquitin specific peptidase 44
hg19_v2_chr7_-_16685422_16685448	0.0792138	SOX9	ENST00000306999.2|ANKMY2|ENSG00000106524.4|ankyrin repeat and MYND domain containing 2
hg19_v2_chr11_+_13299186_13299432	0.0791394	SOX9	ENST00000527998.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000396441.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000533520.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529825.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389707.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000401424.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529388.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000530357.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403290.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000361003.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389708.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403510.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000482049.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like
hg19_v2_chr6_+_22146851_22146883	0.0787034	SOX9	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr15_-_59041768_59041950	0.0778003	SOX9	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr14_-_91884150_91884234	0.0771795	SOX9	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr20_-_1317555_1317555	0.0770263	SOX9	ENST00000537552.1|AL136531.1|ENSG00000203630.3|HCG2043693; Uncharacterized protein
hg19_v2_chr1_-_40367668_40367687	0.076624	SOX9	ENST00000397332.2|MYCL|ENSG00000116990.9|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 	ENST00000429311.1|MYCL|ENSG00000116990.9|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog
hg19_v2_chr5_+_140767452_140767452	0.0759831	SOX9	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr4_+_175205162_175205169	0.0754652	SOX9	ENST00000503053.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr19_+_16187816_16187838	0.0742421	SOX9	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr12_-_95611149_95611249	0.0741233	SOX9	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr15_+_89922345_89922362	0.0738771	SOX9	ENST00000558982.1|LINC00925|ENSG00000255571.2|long intergenic non-protein coding RNA 925
hg19_v2_chr10_-_62332357_62332428	0.0736168	SOX9	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr8_+_133787586_133787673	0.0722175	SOX9	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr12_+_69979210_69979252	0.0715212	SOX9	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr1_+_16085244_16085255	0.0714884	SOX9	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr20_-_17662705_17662874	0.0714617	SOX9	ENST00000455029.2|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr11_+_63953691_63953713	0.071307	SOX9	ENST00000543847.1|STIP1|ENSG00000168439.12|stress-induced-phosphoprotein 1
hg19_v2_chr17_-_42441204_42441243	0.0710743	SOX9	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr6_-_79944336_79944440	0.0705496	SOX9	ENST00000344726.5|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3 	ENST00000275036.7|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3
hg19_v2_chr8_+_42196000_42196021	0.0704764	SOX9	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr19_+_18208603_18208614	0.0702797	SOX9	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr1_-_243418344_243418356	0.0701833	SOX9	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr15_-_52263937_52264003	0.0695589	SOX9	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr9_+_103235365_103235419	0.0694135	SOX9	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr1_-_153643442_153643524	0.0691866	SOX9	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr3_-_128294929_128294929	0.069071	SOX9	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr1_+_185014496_185014518	0.0686375	SOX9	ENST00000367510.3|RNF2|ENSG00000121481.6|ring finger protein 2
hg19_v2_chr15_+_57211318_57211355	0.0677322	SOX9	ENST00000557947.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr11_-_102323489_102323576	0.0677114	SOX9	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr14_-_38036271_38036301	0.0675978	SOX9	ENST00000556024.1|RP11-356O9.2|ENSG00000259087.1|RP11-356O9.2
hg19_v2_chr12_-_120805872_120805897	0.0675959	SOX9	ENST00000546985.1|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr6_+_41040678_41040722	0.0669858	SOX9	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr14_+_75230011_75230120	0.0664378	SOX9	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr2_-_37899323_37899374	0.0661597	SOX9	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr17_+_67498295_67498333	0.0660832	SOX9	ENST00000589295.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr15_+_71184931_71184974	0.0660775	SOX9	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr12_+_49761273_49761330	0.0655931	SOX9	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr5_-_131826457_131826514	0.0655553	SOX9	ENST00000437654.1|IRF1|ENSG00000125347.9|interferon regulatory factor 1 	ENST00000245414.4|IRF1|ENSG00000125347.9|interferon regulatory factor 1
hg19_v2_chr1_+_33116765_33117088	0.0650782	SOX9	ENST00000544435.1|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4 	ENST00000373485.1|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4 	ENST00000458695.2|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4 	ENST00000490500.1|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4 	ENST00000445722.2|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4
hg19_v2_chr7_+_12726623_12726750	0.0647504	SOX9	ENST00000439721.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr18_-_24128496_24128554	0.0645002	SOX9	ENST00000417602.1|KCTD1|ENSG00000134504.8|potassium channel tetramerization domain containing 1
hg19_v2_chr12_-_118797475_118797527	0.064386	SOX9	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr6_+_32132360_32132437	0.0643839	SOX9	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr18_+_20494078_20494108	0.0643254	SOX9	ENST00000579124.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000577588.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000582354.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000581819.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8
hg19_v2_chr12_-_12674032_12674059	0.064324	SOX9	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr20_-_34330129_34330234	0.064184	SOX9	ENST00000397370.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000528062.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000407261.4|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000374038.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000361162.6|RBM39|ENSG00000131051.16|RNA binding motif protein 39
hg19_v2_chr4_-_83351005_83351019	0.0641259	SOX9	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr1_-_200992827_200992867	0.063775	SOX9	ENST00000332129.2|KIF21B|ENSG00000116852.10|kinesin family member 21B 	ENST00000422435.2|KIF21B|ENSG00000116852.10|kinesin family member 21B
hg19_v2_chr7_+_16793160_16793160	0.0637346	SOX9	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr17_+_7748233_7748375	0.0636274	SOX9	ENST00000570632.1|KDM6B|ENSG00000132510.6|lysine (K)-specific demethylase 6B
hg19_v2_chr4_-_5894777_5894799	0.0633774	SOX9	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr16_+_14802801_14802801	0.0633155	SOX9	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr12_+_49212514_49212692	0.0632835	SOX9	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr14_-_69619291_69619326	0.0632343	SOX9	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr12_-_2966193_2966213	0.0630512	SOX9	ENST00000382678.3|AC005841.1|ENSG00000206044.3|Uncharacterized protein ENSP00000372125
hg19_v2_chr7_+_26191809_26191890	0.0630464	SOX9	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr12_+_95611536_95611543	0.0628375	SOX9	ENST00000549002.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr17_-_56605341_56605363	0.0625347	SOX9	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr20_-_45984401_45984514	0.0624364	SOX9	ENST00000311275.7|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr1_-_184723942_184724047	0.0623028	SOX9	ENST00000318130.8|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr9_+_4792971_4792982	0.0618981	SOX9	ENST00000381732.3|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000442869.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr7_+_11013491_11013553	0.0618419	SOX9	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr14_-_88459182_88459236	0.061823	SOX9	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr2_+_102314161_102314206	0.0614827	SOX9	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr11_-_111649015_111649030	0.0612675	SOX9	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chrX_+_49126294_49126337	0.0606832	SOX9	ENST00000466508.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000438316.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000055335.6|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000495799.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F
hg19_v2_chr8_+_42195972_42195991	0.0604833	SOX9	ENST00000532157.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000265421.4|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000520008.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr5_-_179780312_179780387	0.0603342	SOX9	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr14_-_88459503_88459615	0.0603087	SOX9	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr6_-_15586238_15586256	0.0599433	SOX9	ENST00000462989.2|DTNBP1|ENSG00000047579.15|dystrobrevin binding protein 1
hg19_v2_chrX_-_40005865_40005899	0.0593387	SOX9	ENST00000412952.1|BCOR|ENSG00000183337.12|BCL6 corepressor
hg19_v2_chr14_+_67291158_67291192	0.0593078	SOX9	ENST00000555456.1|GPHN|ENSG00000171723.11|gephyrin
hg19_v2_chr6_+_27100811_27100832	0.0591478	SOX9	ENST00000359193.2|HIST1H2AG|ENSG00000196787.2|histone cluster 1, H2ag
hg19_v2_chr11_+_125496619_125496646	0.058547	SOX9	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr1_-_26232951_26232959	0.0584664	SOX9	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr22_-_30970560_30970577	0.0584172	SOX9	ENST00000402369.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000406361.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr15_+_91416092_91416120	0.057926	SOX9	ENST00000559353.1|FURIN|ENSG00000140564.6|furin (paired basic amino acid cleaving enzyme)
hg19_v2_chrX_+_107068959_107068985	0.0578358	SOX9	ENST00000451923.1|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr10_-_120101804_120101843	0.0577926	SOX9	ENST00000369183.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A 	ENST00000369172.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A
hg19_v2_chr14_-_69619823_69619879	0.0576352	SOX9	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr14_-_90420862_90420901	0.0575591	SOX9	ENST00000556005.1|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000555872.1|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11
hg19_v2_chr9_+_22446814_22446840	0.0575037	SOX9	ENST00000325870.2|DMRTA1|ENSG00000176399.3|DMRT-like family A1
hg19_v2_chr1_+_10271674_10271674	0.0572437	SOX9	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr4_-_185726906_185726942	0.0564945	SOX9	ENST00000513317.1|ACSL1|ENSG00000151726.9|acyl-CoA synthetase long-chain family member 1
hg19_v2_chr7_-_27205136_27205164	0.0564286	SOX9	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chr11_+_34073269_34073287	0.0563789	SOX9	ENST00000389645.3|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr16_-_19533404_19533467	0.0561283	SOX9	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr6_-_135375921_135375969	0.055749	SOX9	ENST00000367820.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000314674.3|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000524715.1|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000415177.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000367826.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae)
hg19_v2_chr1_-_21503337_21503407	0.0557432	SOX9	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr1_-_85930246_85930289	0.0554485	SOX9	ENST00000426972.3|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr11_-_8190534_8190602	0.0554223	SOX9	ENST00000309737.6|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000425599.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000539720.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000531450.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000419822.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000335425.7|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000343202.4|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone
hg19_v2_chr6_+_105404899_105404931	0.0551344	SOX9	ENST00000345080.4|LIN28B|ENSG00000187772.6|lin-28 homolog B (C. elegans)
hg19_v2_chr11_+_110001723_110001732	0.0546703	SOX9	ENST00000528673.1|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr8_-_101965146_101965236	0.0546423	SOX9	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr11_-_92930556_92930621	0.0542032	SOX9	ENST00000529184.1|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr14_+_52456193_52456320	0.0541808	SOX9	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr12_+_54378923_54378970	0.0540687	SOX9	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr17_+_16945820_16945859	0.053914	SOX9	ENST00000577514.1|MPRIP|ENSG00000133030.15|myosin phosphatase Rho interacting protein
hg19_v2_chr7_-_148725733_148725759	0.0539099	SOX9	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr11_+_117103333_117103419	0.0537195	SOX9	ENST00000534428.1|RNF214|ENSG00000167257.6|ring finger protein 214
hg19_v2_chr7_-_99679324_99679371	0.0535983	SOX9	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr1_-_26233423_26233482	0.0535697	SOX9	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr20_-_30310336_30310400	0.0535462	SOX9	ENST00000434194.1|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000376062.2|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr11_-_94965667_94965705	0.0534397	SOX9	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chrX_+_135579238_135579416	0.0526957	SOX9	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr12_+_69979446_69979471	0.0524291	SOX9	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr6_-_105850937_105850983	0.0523764	SOX9	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr1_-_68698197_68698214	0.0523518	SOX9	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr1_-_26324534_26324648	0.0522958	SOX9	ENST00000374284.1|PAFAH2|ENSG00000158006.9|platelet-activating factor acetylhydrolase 2, 40kDa 	ENST00000441420.1|PAFAH2|ENSG00000158006.9|platelet-activating factor acetylhydrolase 2, 40kDa 	ENST00000374282.3|PAFAH2|ENSG00000158006.9|platelet-activating factor acetylhydrolase 2, 40kDa
hg19_v2_chr14_+_52456327_52456344	0.0522376	SOX9	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr6_+_21666633_21666681	0.0520133	SOX9	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr14_-_103989033_103989176	0.0518881	SOX9	ENST00000553878.1|CKB|ENSG00000166165.8|creatine kinase, brain 	ENST00000557530.1|CKB|ENSG00000166165.8|creatine kinase, brain
hg19_v2_chr16_+_23847355_23847403	0.0517458	SOX9	ENST00000498058.1|PRKCB|ENSG00000166501.8|protein kinase C, beta
hg19_v2_chr6_-_64029879_64029891	0.0516591	SOX9	ENST00000370658.5|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000485906.2|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000370657.4|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain
hg19_v2_chr11_-_102323740_102323780	0.0516371	SOX9	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr8_-_80993010_80993073	0.0511465	SOX9	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr19_-_1568057_1568142	0.0507566	SOX9	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr12_-_99288536_99288677	0.0507295	SOX9	ENST00000549797.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000333732.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000341752.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr5_+_170288856_170288920	0.0506591	SOX9	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr22_+_31090793_31090889	0.0501305	SOX9	ENST00000332585.6|OSBP2|ENSG00000184792.11|oxysterol binding protein 2 	ENST00000382310.3|OSBP2|ENSG00000184792.11|oxysterol binding protein 2 	ENST00000446658.2|OSBP2|ENSG00000184792.11|oxysterol binding protein 2
hg19_v2_chr1_+_160370344_160370406	0.0499155	SOX9	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr1_+_173991633_173991655	0.0497825	SOX9	ENST00000424181.1|RP11-160H22.3|ENSG00000224977.1|RP11-160H22.3
hg19_v2_chr15_+_41136369_41136420	0.0494055	SOX9	ENST00000563656.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr6_+_89790490_89790506	0.0492298	SOX9	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr6_-_41040268_41040353	0.0487989	SOX9	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr6_-_11232891_11232915	0.0487416	SOX9	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr1_-_243418621_243418648	0.0486943	SOX9	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr3_-_123339343_123339401	0.0485708	SOX9	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr1_+_66458072_66458109	0.0485661	SOX9	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr12_-_52887034_52887049	0.0485579	SOX9	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr1_-_204463829_204463857	0.0485543	SOX9	ENST00000429009.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta 	ENST00000415899.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr8_-_101965559_101965570	0.0484253	SOX9	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr3_+_51422478_51422478	0.0484211	SOX9	ENST00000528157.1|MANF|ENSG00000145050.11|mesencephalic astrocyte-derived neurotrophic factor
hg19_v2_chr6_+_28193037_28193117	0.0482951	SOX9	ENST00000531981.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000425468.2|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000252207.5|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000531979.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000527436.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9
hg19_v2_chr17_-_42276574_42276742	0.0481509	SOX9	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr7_+_12727250_12727265	0.0481409	SOX9	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr7_+_128379449_128379463	0.0475724	SOX9	ENST00000479257.1|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr5_+_94890840_94890871	0.0472609	SOX9	ENST00000504763.1|ARSK|ENSG00000164291.12|arylsulfatase family, member K
hg19_v2_chr9_+_2622085_2622174	0.0472088	SOX9	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr7_-_148725544_148725630	0.0471886	SOX9	ENST00000413966.1|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr22_+_38054721_38054737	0.0467146	SOX9	ENST00000215904.6|PDXP|ENSG00000241360.1|pyridoxal (pyridoxine, vitamin B6) phosphatase
hg19_v2_chr12_+_49212261_49212319	0.046618	SOX9	ENST00000547818.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547392.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr1_-_68698222_68698266	0.0462193	SOX9	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr7_-_150924121_150924332	0.0460903	SOX9	ENST00000441774.1|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000222388.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000287844.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2
hg19_v2_chr19_-_17375527_17375538	0.0458415	SOX9	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr7_+_141463897_141463897	0.0454317	SOX9	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr1_-_26231589_26231635	0.0453685	SOX9	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr17_-_62308087_62308116	0.0453202	SOX9	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr10_-_128110441_128110456	0.0452566	SOX9	ENST00000456514.1|LINC00601|ENSG00000235180.1|long intergenic non-protein coding RNA 601
hg19_v2_chr3_-_124839648_124839709	0.0447812	SOX9	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr12_-_88974236_88974256	0.0447608	SOX9	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr2_+_208576355_208576475	0.0447399	SOX9	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr3_+_189507523_189507590	0.0446944	SOX9	ENST00000437221.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392463.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392461.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000449992.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000456148.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr17_+_57232690_57232860	0.0441464	SOX9	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr19_+_54641444_54641504	0.0436346	SOX9	ENST00000221232.5|CNOT3|ENSG00000088038.13|CCR4-NOT transcription complex, subunit 3 	ENST00000358389.3|CNOT3|ENSG00000088038.13|CCR4-NOT transcription complex, subunit 3
hg19_v2_chr17_+_33914460_33914536	0.0434083	SOX9	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr2_+_160568978_160569064	0.0434051	SOX9	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr19_+_44100544_44100581	0.0431105	SOX9	ENST00000391965.2|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000525771.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr19_+_45504688_45504782	0.0430813	SOX9	ENST00000221452.8|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B 	ENST00000540120.1|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B 	ENST00000505236.1|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B
hg19_v2_chr11_-_10829851_10829860	0.0430723	SOX9	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr20_+_60697480_60697583	0.0429088	SOX9	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr13_+_51913819_51913838	0.042431	SOX9	ENST00000419898.2|SERPINE3|ENSG00000253309.2|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3
hg19_v2_chr16_+_3704822_3704836	0.0422739	SOX9	ENST00000414110.2|DNASE1|ENSG00000213918.6|deoxyribonuclease I
hg19_v2_chr11_+_126225529_126225660	0.042216	SOX9	ENST00000227495.6|ST3GAL4|ENSG00000110080.14|ST3 beta-galactoside alpha-2,3-sialyltransferase 4 	ENST00000444328.2|ST3GAL4|ENSG00000110080.14|ST3 beta-galactoside alpha-2,3-sialyltransferase 4 	ENST00000356132.4|ST3GAL4|ENSG00000110080.14|ST3 beta-galactoside alpha-2,3-sialyltransferase 4
hg19_v2_chrM_+_4431_4475	0.0421449	SOX9	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr3_+_44690211_44690267	0.0420617	SOX9	ENST00000396056.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000432115.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000415571.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000399560.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000296092.3|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000542250.1|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000453164.1|ZNF35|ENSG00000169981.6|zinc finger protein 35
hg19_v2_chr20_-_52645231_52645242	0.0415577	SOX9	ENST00000448484.1|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1
hg19_v2_chr1_+_93913713_93913839	0.0414815	SOX9	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr11_+_63953587_63953685	0.0413279	SOX9	ENST00000305218.4|STIP1|ENSG00000168439.12|stress-induced-phosphoprotein 1 	ENST00000538945.1|STIP1|ENSG00000168439.12|stress-induced-phosphoprotein 1
hg19_v2_chr2_-_1748214_1748295	0.0407574	SOX9	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr17_-_57232525_57232584	0.0406767	SOX9	ENST00000583380.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000580541.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000578105.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000437036.2|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr2_+_27070964_27071027	0.0406751	SOX9	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr1_+_203096831_203096864	0.0403894	SOX9	ENST00000337894.4|ADORA1|ENSG00000163485.11|adenosine A1 receptor
hg19_v2_chr7_-_99277610_99277626	0.0403183	SOX9	ENST00000343703.5|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000222982.4|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000439761.1|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000339843.2|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5
hg19_v2_chr2_-_86422523_86422595	0.040222	SOX9	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr2_+_128180842_128180878	0.0401143	SOX9	ENST00000402125.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr15_-_64673630_64673648	0.0400854	SOX9	ENST00000558008.1|KIAA0101|ENSG00000166803.6|KIAA0101 	ENST00000559519.1|KIAA0101|ENSG00000166803.6|KIAA0101 	ENST00000380258.2|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr22_+_38864041_38864150	0.0400346	SOX9	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr17_-_56595196_56595266	0.0399887	SOX9	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr2_+_220309379_220309413	0.0397915	SOX9	ENST00000451076.1|SPEG|ENSG00000072195.10|SPEG complex locus
hg19_v2_chr10_+_70480963_70481010	0.0393681	SOX9	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr1_-_225840747_225840860	0.0393161	SOX9	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr7_+_134464414_134464429	0.0392618	SOX9	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_+_26737253_26737269	0.0392049	SOX9	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr17_+_67498538_67498570	0.0389384	SOX9	ENST00000589647.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr7_-_22233442_22233527	0.0388695	SOX9	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr19_+_42254885_42254970	0.0387532	SOX9	ENST00000595740.1|CEACAM6|ENSG00000086548.8|carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
hg19_v2_chr1_+_33116743_33116754	0.0387067	SOX9	ENST00000414241.3|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4 	ENST00000373493.5|RBBP4|ENSG00000162521.14|retinoblastoma binding protein 4
hg19_v2_chr15_+_41136263_41136291	0.0386632	SOX9	ENST00000568823.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr11_-_77531858_77531880	0.0386495	SOX9	ENST00000360355.2|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr15_-_34502197_34502212	0.0380941	SOX9	ENST00000557877.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr5_+_74632993_74633028	0.0380692	SOX9	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr12_-_49581152_49581241	0.0380245	SOX9	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr1_+_6640108_6640148	0.0380242	SOX9	ENST00000377674.4|ZBTB48|ENSG00000204859.7|zinc finger and BTB domain containing 48 	ENST00000488936.1|ZBTB48|ENSG00000204859.7|zinc finger and BTB domain containing 48
hg19_v2_chr1_+_68150744_68150890	0.0377842	SOX9	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chrX_-_38080077_38080177	0.0370272	SOX9	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chrX_+_41193407_41193422	0.0369709	SOX9	ENST00000457138.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 	ENST00000441189.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chr10_+_49514698_49514736	0.0369569	SOX9	ENST00000432379.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8 	ENST00000429041.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8 	ENST00000374189.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8
hg19_v2_chr5_+_69321074_69321200	0.036608	SOX9	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr17_-_73505961_73505976	0.0365784	SOX9	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr5_-_159546396_159546470	0.0363638	SOX9	ENST00000523662.1|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000456329.3|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000307063.7|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A
hg19_v2_chr10_+_69644404_69644427	0.0362437	SOX9	ENST00000212015.6|SIRT1|ENSG00000096717.7|sirtuin 1
hg19_v2_chr14_+_102276209_102276242	0.0360052	SOX9	ENST00000445439.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000334743.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557095.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr4_-_185729602_185729613	0.0355345	SOX9	ENST00000437665.3|ACSL1|ENSG00000151726.9|acyl-CoA synthetase long-chain family member 1
hg19_v2_chr1_-_93645818_93645918	0.0355055	SOX9	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr18_-_55288973_55289085	0.0348195	SOX9	ENST00000423481.2|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase 	ENST00000587194.1|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase 	ENST00000591599.1|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase 	ENST00000588661.1|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase
hg19_v2_chr2_-_61765732_61765761	0.0347854	SOX9	ENST00000443240.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000436018.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr1_-_31381528_31381659	0.0347775	SOX9	ENST00000339394.6|SDC3|ENSG00000162512.11|syndecan 3
hg19_v2_chr13_+_42846272_42846334	0.0345841	SOX9	ENST00000025301.2|AKAP11|ENSG00000023516.7|A kinase (PRKA) anchor protein 11
hg19_v2_chr8_+_98656336_98656535	0.0341911	SOX9	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr16_+_30934376_30934392	0.0341761	SOX9	ENST00000562798.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19 	ENST00000471231.2|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr11_+_68080077_68080127	0.0338315	SOX9	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr5_-_16936340_16936418	0.0335546	SOX9	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr17_-_37764128_37764258	0.0335197	SOX9	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr3_+_181429704_181429722	0.0335115	SOX9	ENST00000431565.2|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2 	ENST00000325404.1|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2
hg19_v2_chr19_+_7660716_7660802	0.0329979	SOX9	ENST00000160298.4|CAMSAP3|ENSG00000076826.5|calmodulin regulated spectrin-associated protein family, member 3 	ENST00000446248.2|CAMSAP3|ENSG00000076826.5|calmodulin regulated spectrin-associated protein family, member 3
hg19_v2_chr15_-_37392724_37392757	0.032905	SOX9	ENST00000424352.2|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr12_+_69979113_69979155	0.0328574	SOX9	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr13_+_53029564_53029650	0.0319678	SOX9	ENST00000468284.1|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000378034.3|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000258607.5|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2 	ENST00000378037.5|CKAP2|ENSG00000136108.10|cytoskeleton associated protein 2
hg19_v2_chr16_-_48281444_48281479	0.0316518	SOX9	ENST00000537808.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11 	ENST00000569991.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr6_+_37787704_37787718	0.0316232	SOX9	ENST00000474522.1|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr9_+_15422702_15422883	0.0316165	SOX9	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr20_+_42086525_42086568	0.0314274	SOX9	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr4_-_76598326_76598346	0.0313857	SOX9	ENST00000503660.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr5_+_178986693_178986820	0.0313081	SOX9	ENST00000437570.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1 	ENST00000393438.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1
hg19_v2_chr18_+_34409069_34409203	0.031124	SOX9	ENST00000543923.1|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000280020.5|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000435985.2|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000592521.1|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000587139.1|KIAA1328|ENSG00000150477.10|KIAA1328
hg19_v2_chr8_-_101965104_101965119	0.0310091	SOX9	ENST00000437293.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr7_-_111846435_111846471	0.0309608	SOX9	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr14_+_39644387_39644417	0.0304007	SOX9	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr5_+_76011868_76012005	0.030303	SOX9	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr1_+_26737292_26737322	0.0298997	SOX9	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr9_-_74979420_74979580	0.0297874	SOX9	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr7_+_128379346_128379447	0.0296208	SOX9	ENST00000535011.2|CALU|ENSG00000128595.12|calumenin 	ENST00000542996.2|CALU|ENSG00000128595.12|calumenin 	ENST00000535623.1|CALU|ENSG00000128595.12|calumenin 	ENST00000538546.1|CALU|ENSG00000128595.12|calumenin 	ENST00000249364.4|CALU|ENSG00000128595.12|calumenin 	ENST00000449187.2|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr5_+_138677515_138677581	0.0295222	SOX9	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr16_+_19467772_19467839	0.0289465	SOX9	ENST00000219821.5|TMC5|ENSG00000103534.12|transmembrane channel-like 5 	ENST00000561503.1|TMC5|ENSG00000103534.12|transmembrane channel-like 5 	ENST00000564959.1|TMC5|ENSG00000103534.12|transmembrane channel-like 5
hg19_v2_chr17_+_26646121_26646133	0.0285613	SOX9	ENST00000226230.6|TMEM97|ENSG00000109084.9|transmembrane protein 97
hg19_v2_chr11_+_1411503_1411521	0.0284181	SOX9	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr9_+_34179003_34179064	0.0283478	SOX9	ENST00000545103.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000543944.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000536252.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000540348.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000297661.4|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000379186.4|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1
hg19_v2_chr12_-_49075941_49076001	0.0282836	SOX9	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr21_+_17442799_17442853	0.0276271	SOX9	ENST00000602580.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000458468.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602935.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr4_+_95128996_95129056	0.0275286	SOX9	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr3_+_9439579_9439592	0.0273882	SOX9	ENST00000406341.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr19_-_44439387_44439419	0.027371	SOX9	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr4_+_41614909_41614926	0.0272331	SOX9	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr16_+_68573640_68573698	0.0272323	SOX9	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr17_+_33914276_33914386	0.0269615	SOX9	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr6_-_107436473_107436543	0.0269214	SOX9	ENST00000369042.1|BEND3|ENSG00000178409.9|BEN domain containing 3
hg19_v2_chr4_+_113152881_113152912	0.0268522	SOX9	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr20_+_37554955_37555067	0.026741	SOX9	ENST00000217429.4|FAM83D|ENSG00000101447.9|family with sequence similarity 83, member D
hg19_v2_chr6_+_64282447_64282586	0.0267349	SOX9	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr1_-_65533390_65533443	0.0266966	SOX9	ENST00000448344.1|RP4-535B20.1|ENSG00000231485.1|RP4-535B20.1
hg19_v2_chr3_-_196987309_196987350	0.0266018	SOX9	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr17_-_7297519_7297593	0.0262894	SOX9	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr21_-_40720974_40720994	0.0261858	SOX9	ENST00000380748.1|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr10_+_74033672_74033688	0.0260795	SOX9	ENST00000307365.3|DDIT4|ENSG00000168209.4|DNA-damage-inducible transcript 4
hg19_v2_chr7_-_107643567_107643657	0.0260693	SOX9	ENST00000393559.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000439976.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000393560.1|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr19_-_10491130_10491220	0.0260222	SOX9	ENST00000530829.1|TYK2|ENSG00000105397.9|tyrosine kinase 2 	ENST00000529370.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr10_-_105845674_105845760	0.0258316	SOX9	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr14_+_102276132_102276178	0.0256433	SOX9	ENST00000350249.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557621.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556946.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr5_+_60240943_60241011	0.0254677	SOX9	ENST00000296597.5|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
hg19_v2_chr10_+_104678032_104678094	0.0253808	SOX9	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr18_-_34408693_34408780	0.0251364	SOX9	ENST00000587382.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000589049.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000587129.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr6_+_30594619_30594665	0.0249881	SOX9	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr2_+_111880242_111880289	0.024979	SOX9	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chrX_+_129473916_129474026	0.0249743	SOX9	ENST00000545805.1|SLC25A14|ENSG00000102078.11|solute carrier family 25 (mitochondrial carrier, brain), member 14 	ENST00000543953.1|SLC25A14|ENSG00000102078.11|solute carrier family 25 (mitochondrial carrier, brain), member 14 	ENST00000218197.5|SLC25A14|ENSG00000102078.11|solute carrier family 25 (mitochondrial carrier, brain), member 14
hg19_v2_chr7_+_116312411_116312502	0.0249695	SOX9	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr12_-_31479045_31479074	0.0249593	SOX9	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr11_-_77532050_77532066	0.0249463	SOX9	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr18_-_21891460_21891506	0.0247914	SOX9	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr5_-_168006591_168006638	0.0246368	SOX9	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr6_+_84569359_84569445	0.0244752	SOX9	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr19_-_5340730_5340859	0.0244415	SOX9	ENST00000372412.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000357368.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000262963.6|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000348075.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000353284.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr7_+_94537542_94537591	0.0239977	SOX9	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr6_+_27782788_27782823	0.0239198	SOX9	ENST00000359465.4|HIST1H2BM|ENSG00000196374.5|histone cluster 1, H2bm
hg19_v2_chr12_+_78224667_78224685	0.0237921	SOX9	ENST00000549464.1|NAV3|ENSG00000067798.9|neuron navigator 3
hg19_v2_chrY_-_21239221_21239302	0.0236893	SOX9	ENST00000447937.1|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding) 	ENST00000331787.2|TTTY14|ENSG00000176728.3|testis-specific transcript, Y-linked 14 (non-protein coding)
hg19_v2_chr3_-_149051444_149051548	0.0236452	SOX9	ENST00000296059.2|TM4SF18|ENSG00000163762.2|transmembrane 4 L six family member 18
hg19_v2_chr11_-_79151695_79151710	0.0235119	SOX9	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr19_+_36359341_36359352	0.0234077	SOX9	ENST00000221891.4|APLP1|ENSG00000105290.7|amyloid beta (A4) precursor-like protein 1
hg19_v2_chr16_-_71918033_71918107	0.0233476	SOX9	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr17_+_26646175_26646295	0.0233333	SOX9	ENST00000583381.1|TMEM97|ENSG00000109084.9|transmembrane protein 97 	ENST00000582113.1|TMEM97|ENSG00000109084.9|transmembrane protein 97 	ENST00000582384.1|TMEM97|ENSG00000109084.9|transmembrane protein 97
hg19_v2_chr5_-_43313574_43313614	0.0231829	SOX9	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr5_+_40679584_40679600	0.0231175	SOX9	ENST00000302472.3|PTGER4|ENSG00000171522.5|prostaglandin E receptor 4 (subtype EP4)
hg19_v2_chr8_-_101964832_101964852	0.0231055	SOX9	ENST00000523131.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000418997.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr1_-_151431674_151431691	0.0230652	SOX9	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr1_-_221915418_221915518	0.0230223	SOX9	ENST00000323825.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10 	ENST00000366899.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10
hg19_v2_chr5_-_60240858_60240905	0.0229799	SOX9	ENST00000426742.2|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000265038.5|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000543101.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000439176.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8
hg19_v2_chr1_+_14075865_14075898	0.022905	SOX9	ENST00000413440.1|PRDM2|ENSG00000116731.18|PR domain containing 2, with ZNF domain
hg19_v2_chr3_-_171489085_171489158	0.0227115	SOX9	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr2_+_220491973_220492049	0.022703	SOX9	ENST00000358055.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr1_+_47137445_47137533	0.0226564	SOX9	ENST00000569393.1|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000334122.4|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000415500.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr9_-_140196703_140196744	0.0226389	SOX9	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr17_+_7761301_7761396	0.0224253	SOX9	ENST00000332439.4|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1 	ENST00000570446.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr7_+_129015484_129015519	0.0223058	SOX9	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr5_+_140729649_140729828	0.0219911	SOX9	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr13_-_28545276_28545276	0.0219716	SOX9	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr17_+_58677539_58677610	0.0215874	SOX9	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr10_+_91461413_91461436	0.0213404	SOX9	ENST00000447580.1|KIF20B|ENSG00000138182.10|kinesin family member 20B
hg19_v2_chr1_-_176176114_176176259	0.0212811	SOX9	ENST00000308769.8|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr5_+_137673200_137673271	0.021181	SOX9	ENST00000434981.2|FAM53C|ENSG00000120709.6|family with sequence similarity 53, member C
hg19_v2_chr20_+_30795664_30795743	0.0210718	SOX9	ENST00000375749.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000375730.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000539210.1|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1
hg19_v2_chr2_-_70475701_70475717	0.0208659	SOX9	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr2_-_50201327_50201341	0.0208073	SOX9	ENST00000412315.1|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr14_-_21516590_21516692	0.0207486	SOX9	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr6_+_27114861_27114896	0.0207468	SOX9	ENST00000377459.1|HIST1H2AH|ENSG00000184825.4|histone cluster 1, H2ah
hg19_v2_chr2_-_128568721_128568766	0.0206662	SOX9	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr15_+_74911430_74911484	0.0206416	SOX9	ENST00000562670.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000564096.1|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chrX_+_46306714_46306741	0.0205919	SOX9	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr9_-_35072585_35072632	0.0205335	SOX9	ENST00000448530.1|VCP|ENSG00000165280.11|valosin containing protein
hg19_v2_chr13_-_31040060_31040102	0.0204577	SOX9	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr5_+_159848807_159848847	0.0204204	SOX9	ENST00000352433.5|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1
hg19_v2_chr4_-_149363662_149363688	0.0203213	SOX9	ENST00000355292.3|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2 	ENST00000358102.3|NR3C2|ENSG00000151623.10|nuclear receptor subfamily 3, group C, member 2
hg19_v2_chr14_-_31495569_31495636	0.0203061	SOX9	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chrX_-_85302531_85302570	0.0202128	SOX9	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr17_+_57642886_57643006	0.0200708	SOX9	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr14_-_91976488_91976661	0.0200538	SOX9	ENST00000554684.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000337238.4|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000428424.2|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000554511.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr15_-_64673665_64673709	0.0200091	SOX9	ENST00000300035.4|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr15_+_93426514_93426562	0.0198405	SOX9	ENST00000556722.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr9_-_130517309_130517388	0.0197846	SOX9	ENST00000414380.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr7_-_99699538_99699563	0.0197436	SOX9	ENST00000343023.6|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7 	ENST00000303887.5|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7
hg19_v2_chr19_+_44100727_44100804	0.0196315	SOX9	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr11_-_111649074_111649123	0.0194094	SOX9	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chrX_-_135962876_135962896	0.0191601	SOX9	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr11_+_118955583_118955640	0.0188226	SOX9	ENST00000278715.3|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000536813.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000537841.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000542729.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000546302.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000442944.2|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000544387.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000543090.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase
hg19_v2_chr7_-_107643674_107643700	0.0188112	SOX9	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr12_-_54673871_54673925	0.0188058	SOX9	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr6_+_56911336_56911347	0.0188	SOX9	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr14_-_69619689_69619757	0.0187757	SOX9	ENST00000389997.6|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000557386.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000554681.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr9_-_5830768_5830787	0.0186644	SOX9	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chr9_+_108463234_108463265	0.0185403	SOX9	ENST00000374688.1|TMEM38B|ENSG00000095209.7|transmembrane protein 38B
hg19_v2_chr7_-_27239703_27239725	0.0183977	SOX9	ENST00000222753.4|HOXA13|ENSG00000106031.6|homeobox A13
hg19_v2_chr5_+_137688285_137688429	0.0182213	SOX9	ENST00000314358.5|KDM3B|ENSG00000120733.9|lysine (K)-specific demethylase 3B
hg19_v2_chr10_+_102759545_102759610	0.0181705	SOX9	ENST00000454422.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr22_+_50247449_50247515	0.0180617	SOX9	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr18_+_72163443_72163521	0.0180263	SOX9	ENST00000324262.4|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000580672.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family)
hg19_v2_chr20_-_40247133_40247194	0.0176741	SOX9	ENST00000373233.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6 	ENST00000309279.7|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr3_+_69985734_69985754	0.0174649	SOX9	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr10_+_22605304_22605372	0.0174052	SOX9	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr1_-_115259337_115259515	0.0169966	SOX9	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr1_+_26503894_26504025	0.0169908	SOX9	ENST00000361530.6|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1 	ENST00000374253.5|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1
hg19_v2_chr17_-_39684550_39684567	0.0169618	SOX9	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr17_+_59489112_59489112	0.0169148	SOX9	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chr2_+_220492116_220492137	0.0169095	SOX9	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr1_+_64239657_64239724	0.0168732	SOX9	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr13_+_111767650_111767874	0.0168377	SOX9	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr11_-_8892464_8892677	0.0165765	SOX9	ENST00000527347.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526241.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526126.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000530938.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526057.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5
hg19_v2_chr10_-_32667660_32667735	0.0163057	SOX9	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr9_-_35111420_35111455	0.0163005	SOX9	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr3_-_52001448_52001478	0.0162792	SOX9	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr3_-_112329110_112329127	0.0162693	SOX9	ENST00000479368.1|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr3_-_88108212_88108223	0.0160544	SOX9	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr12_-_122985494_122985543	0.0159979	SOX9	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr19_+_10765003_10765058	0.0157979	SOX9	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chrX_+_114874727_114874755	0.0156536	SOX9	ENST00000543070.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr2_+_220492287_220492338	0.0154304	SOX9	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr4_-_121993673_121993698	0.0154209	SOX9	ENST00000379692.4|NDNF|ENSG00000173376.9|neuron-derived neurotrophic factor
hg19_v2_chr1_+_164528866_164528877	0.0153655	SOX9	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr6_+_56911476_56911524	0.0153061	SOX9	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr20_-_45985172_45985240	0.0151064	SOX9	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr1_+_161195781_161195795	0.0149349	SOX9	ENST00000367988.3|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chr1_+_150039369_150039444	0.0149236	SOX9	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr18_+_3451646_3451722	0.0147953	SOX9	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr16_+_2083265_2083303	0.0147606	SOX9	ENST00000565855.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 	ENST00000566198.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr8_+_26435359_26435426	0.014644	SOX9	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr13_+_32634993_32635015	0.0146162	SOX9	ENST00000436046.1|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr5_+_74633036_74633085	0.0143876	SOX9	ENST00000343975.5|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr9_-_123476719_123476810	0.0141203	SOX9	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr7_-_5463175_5463195	0.0139983	SOX9	ENST00000399537.4|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18 	ENST00000430969.1|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18
hg19_v2_chr15_+_101402041_101402067	0.0138447	SOX9	ENST00000558475.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000558641.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000559673.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1
hg19_v2_chr19_+_7580944_7581031	0.0137608	SOX9	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr3_+_9439400_9439414	0.0134116	SOX9	ENST00000450326.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402198.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402466.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr16_+_88636789_88636827	0.013402	SOX9	ENST00000301011.5|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18 	ENST00000452588.2|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr3_-_149051194_149051269	0.0130611	SOX9	ENST00000470080.1|TM4SF18|ENSG00000163762.2|transmembrane 4 L six family member 18
hg19_v2_chr5_+_179135246_179135327	0.0128734	SOX9	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr3_+_49058444_49058618	0.012867	SOX9	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr17_-_4871085_4871167	0.0128242	SOX9	ENST00000575142.1|SPAG7|ENSG00000091640.3|sperm associated antigen 7 	ENST00000206020.3|SPAG7|ENSG00000091640.3|sperm associated antigen 7
hg19_v2_chr6_-_41040195_41040263	0.0126786	SOX9	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr18_+_72163536_72163646	0.0125115	SOX9	ENST00000579847.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000583203.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000581513.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000577600.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000579583.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000584613.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family)
hg19_v2_chr16_+_88636875_88636886	0.0124374	SOX9	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr12_-_57882577_57882614	0.0123593	SOX9	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr1_+_12834984_12834984	0.0122855	SOX9	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr7_+_5632436_5632454	0.0121772	SOX9	ENST00000340250.6|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 	ENST00000382361.3|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
hg19_v2_chrX_+_68048803_68048892	0.0121115	SOX9	ENST00000204961.4|EFNB1|ENSG00000090776.5|ephrin-B1
hg19_v2_chr2_+_86668464_86668584	0.0121067	SOX9	ENST00000409064.1|KDM3A|ENSG00000115548.12|lysine (K)-specific demethylase 3A
hg19_v2_chr11_+_117103441_117103452	0.0119963	SOX9	ENST00000531287.1|RNF214|ENSG00000167257.6|ring finger protein 214 	ENST00000531452.1|RNF214|ENSG00000167257.6|ring finger protein 214
hg19_v2_chr17_-_39942322_39942461	0.0119699	SOX9	ENST00000449889.1|JUP|ENSG00000173801.12|junction plakoglobin 	ENST00000465293.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr6_+_56954867_56954882	0.0118506	SOX9	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr14_-_95236551_95236576	0.0118032	SOX9	ENST00000238558.3|GSC|ENSG00000133937.3|goosecoid homeobox
hg19_v2_chr3_-_149510553_149510610	0.0116615	SOX9	ENST00000462519.2|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000446160.1|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000383050.3|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1
hg19_v2_chrX_-_24690771_24690794	0.0116253	SOX9	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr5_+_50679506_50679506	0.0114842	SOX9	ENST00000511384.1|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr1_+_62417957_62417993	0.0114162	SOX9	ENST00000307297.7|INADL|ENSG00000132849.14|InaD-like (Drosophila) 	ENST00000543708.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chrX_-_16888448_16888537	0.0112205	SOX9	ENST00000468092.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000404022.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000380087.2|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7
hg19_v2_chr5_-_83680603_83680617	0.0109422	SOX9	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chrX_+_129473859_129473904	0.0109024	SOX9	ENST00000424447.1|SLC25A14|ENSG00000102078.11|solute carrier family 25 (mitochondrial carrier, brain), member 14
hg19_v2_chr12_-_71003568_71003629	0.0108337	SOX9	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr17_-_72358001_72358085	0.0108134	SOX9	ENST00000375366.3|BTBD17|ENSG00000204347.3|BTB (POZ) domain containing 17
hg19_v2_chr2_+_74425689_74425749	0.0105734	SOX9	ENST00000394053.2|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000409804.1|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000264090.4|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000394050.3|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000409601.1|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
hg19_v2_chr9_-_123476612_123476698	0.0105327	SOX9	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr3_-_129513259_129513392	0.0104824	SOX9	ENST00000329333.5|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr16_-_27561209_27561244	0.0101705	SOX9	ENST00000356183.4|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa 	ENST00000561623.1|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa
hg19_v2_chr3_-_48754599_48754711	0.0101619	SOX9	ENST00000413654.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000454335.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000440424.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449610.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443964.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000417896.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000413298.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449563.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443853.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000437427.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000446860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000412850.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000424035.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000340879.4|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000431721.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000434860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000328631.5|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000432678.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2
hg19_v2_chr11_-_13461790_13461826	0.0101384	SOX9	ENST00000530907.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr10_-_105845536_105845581	0.0100363	SOX9	ENST00000393211.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr8_+_24151620_24151647	0.00989483	SOX9	ENST00000437154.2|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr2_+_232573222_232573249	0.00980114	SOX9	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr1_+_93645314_93645476	0.00949247	SOX9	ENST00000343253.7|CCDC18|ENSG00000122483.13|coiled-coil domain containing 18
hg19_v2_chr15_+_85923856_85923987	0.00932881	SOX9	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr16_+_50775948_50775961	0.00929525	SOX9	ENST00000569681.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000569418.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome) 	ENST00000540145.1|CYLD|ENSG00000083799.13|cylindromatosis (turban tumor syndrome)
hg19_v2_chr12_-_50294033_50294044	0.00890645	SOX9	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr17_-_74722536_74722639	0.00889048	SOX9	ENST00000585429.1|JMJD6|ENSG00000070495.10|jumonji domain containing 6
hg19_v2_chr10_-_134599556_134599653	0.00887056	SOX9	ENST00000368592.5|NKX6-2|ENSG00000148826.6|NK6 homeobox 2
hg19_v2_chr12_-_6233828_6233843	0.00885417	SOX9	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr3_-_123339418_123339473	0.00881192	SOX9	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chrX_+_9880590_9880723	0.00862259	SOX9	ENST00000452575.1|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr3_+_111260980_111261016	0.00854005	SOX9	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr7_+_120591170_120591244	0.00850627	SOX9	ENST00000431467.1|ING3|ENSG00000071243.11|inhibitor of growth family, member 3
hg19_v2_chr7_-_14942944_14942997	0.00846322	SOX9	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chrX_+_41192595_41192651	0.00845735	SOX9	ENST00000399959.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chr12_+_53443680_53443858	0.00836196	SOX9	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr2_-_54197915_54197977	0.00834154	SOX9	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chrX_+_85403487_85403625	0.00831573	SOX9	ENST00000373125.4|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr19_+_10764937_10764998	0.00826009	SOX9	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr1_-_160040038_160040064	0.00823157	SOX9	ENST00000368089.3|KCNJ10|ENSG00000177807.6|potassium inwardly-rectifying channel, subfamily J, member 10
hg19_v2_chr1_+_161195835_161195864	0.00819801	SOX9	ENST00000545897.1|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chrX_-_19817869_19817922	0.00801877	SOX9	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr3_+_189507432_189507459	0.00796548	SOX9	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr6_+_97372645_97372665	0.0079553	SOX9	ENST00000536676.1|KLHL32|ENSG00000186231.12|kelch-like family member 32 	ENST00000544166.1|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr17_-_57232596_57232630	0.00794974	SOX9	ENST00000581068.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000330137.7|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr8_+_79578282_79578334	0.00793496	SOX9	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr1_-_155880672_155880715	0.00789783	SOX9	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr5_-_64777685_64777712	0.00776109	SOX9	ENST00000536360.1|ADAMTS6|ENSG00000049192.10|ADAM metallopeptidase with thrombospondin type 1 motif, 6
hg19_v2_chr12_-_24103954_24103972	0.00766917	SOX9	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr5_-_83680192_83680209	0.00760254	SOX9	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr11_-_69519410_69519410	0.00741254	SOX9	ENST00000294312.3|FGF19|ENSG00000162344.3|fibroblast growth factor 19
hg19_v2_chr1_+_156119466_156119514	0.00731182	SOX9	ENST00000414683.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr1_-_31538517_31538632	0.00727878	SOX9	ENST00000440538.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000423018.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000424085.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000426105.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000257075.5|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373747.3|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000525843.1|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1 	ENST00000373742.2|PUM1|ENSG00000134644.11|pumilio RNA-binding family member 1
hg19_v2_chr3_+_69985792_69985874	0.0072613	SOX9	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr19_-_7694417_7694459	0.00718001	SOX9	ENST00000358368.4|XAB2|ENSG00000076924.7|XPA binding protein 2 	ENST00000534844.1|XAB2|ENSG00000076924.7|XPA binding protein 2
hg19_v2_chr12_-_54019755_54019804	0.00709001	SOX9	ENST00000588078.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000591834.1|RP11-793H13.10|ENSG00000267281.2|Uncharacterized protein  	ENST00000551480.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000548118.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000456903.4|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chr6_+_43139037_43139094	0.00697997	SOX9	ENST00000265354.4|SRF|ENSG00000112658.6|serum response factor (c-fos serum response element-binding transcription factor)
hg19_v2_chr7_-_27219849_27219880	0.00691481	SOX9	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr1_-_176176629_176176659	0.00686502	SOX9	ENST00000367669.3|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr18_+_3449821_3450034	0.00686423	SOX9	ENST00000407501.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000405385.3|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000546979.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr5_+_50678921_50678921	0.00668658	SOX9	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr22_+_38035623_38035712	0.0066706	SOX9	ENST00000336738.5|SH3BP1|ENSG00000100092.16|SH3-domain binding protein 1 	ENST00000442465.2|SH3BP1|ENSG00000100092.16|SH3-domain binding protein 1
hg19_v2_chr10_+_94050913_94050965	0.00656485	SOX9	ENST00000358935.2|MARCH5|ENSG00000198060.5|membrane-associated ring finger (C3HC4) 5
hg19_v2_chr12_+_54674482_54674564	0.00656372	SOX9	ENST00000547708.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000340913.6|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000551702.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000330752.8|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000547276.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1
hg19_v2_chr17_-_7297833_7297889	0.00655194	SOX9	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr3_-_16306432_16306491	0.00654821	SOX9	ENST00000383775.4|DPH3|ENSG00000154813.5|diphthamide biosynthesis 3 	ENST00000488423.1|DPH3|ENSG00000154813.5|diphthamide biosynthesis 3
hg19_v2_chr2_-_65357225_65357267	0.00638261	SOX9	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chrX_-_2418634_2418691	0.00607637	SOX9	ENST00000444280.1|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked
hg19_v2_chr5_+_60241020_60241162	0.00590208	SOX9	ENST00000511107.1|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 	ENST00000502658.1|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
hg19_v2_chr12_-_8815477_8815490	0.00567607	SOX9	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr7_+_111846643_111846704	0.00566447	SOX9	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr12_-_122985067_122985268	0.00566251	SOX9	ENST00000540586.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8 	ENST00000543897.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr11_-_117103208_117103288	0.00563714	SOX9	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr8_+_11660120_11660221	0.00553451	SOX9	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr11_+_1860200_1860219	0.00535449	SOX9	ENST00000381911.1|TNNI2|ENSG00000130598.11|troponin I type 2 (skeletal, fast)
hg19_v2_chr2_+_168725458_168725458	0.00529277	SOX9	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr9_+_35538616_35538650	0.00524236	SOX9	ENST00000455600.1|RUSC2|ENSG00000198853.7|RUN and SH3 domain containing 2
hg19_v2_chr16_-_838329_838397	0.00519859	SOX9	ENST00000563560.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000569601.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000565809.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000565377.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000007264.2|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000567114.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1
hg19_v2_chr12_+_69633372_69633396	0.00507099	SOX9	ENST00000456847.3|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa 	ENST00000266679.8|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr20_+_61147651_61147666	0.00498895	SOX9	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr10_-_97321165_97321176	0.00496883	SOX9	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr11_+_67007518_67007533	0.00485788	SOX9	ENST00000530342.1|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A 	ENST00000308783.5|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A
hg19_v2_chr4_-_109089573_109089585	0.00478875	SOX9	ENST00000265165.1|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr8_+_104831440_104831453	0.00459268	SOX9	ENST00000515551.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr16_-_25026641_25026698	0.00457948	SOX9	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr12_+_70760056_70760085	0.00455873	SOX9	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr11_+_77532155_77532210	0.00441338	SOX9	ENST00000532481.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000526415.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000393427.2|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000527134.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000304716.8|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing
hg19_v2_chr16_-_30798492_30798535	0.00434003	SOX9	ENST00000262525.4|ZNF629|ENSG00000102870.4|zinc finger protein 629
hg19_v2_chr5_+_65222500_65222601	0.00432807	SOX9	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr1_-_26232522_26232644	0.00425239	SOX9	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr11_-_46867780_46867848	0.00419029	SOX9	ENST00000529230.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5 	ENST00000415402.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5 	ENST00000312055.5|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr19_+_16222439_16222472	0.00413674	SOX9	ENST00000300935.3|RAB8A|ENSG00000167461.7|RAB8A, member RAS oncogene family
hg19_v2_chr5_+_159848854_159848917	0.00396791	SOX9	ENST00000517480.1|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1 	ENST00000520452.1|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1 	ENST00000393964.1|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1
hg19_v2_chr19_+_55851221_55851285	0.00386883	SOX9	ENST00000255613.3|SUV420H2|ENSG00000133247.9|suppressor of variegation 4-20 homolog 2 (Drosophila) 	ENST00000539076.1|AC020922.1|ENSG00000267531.1|Uncharacterized protein
hg19_v2_chr6_+_89790459_89790479	0.00379063	SOX9	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr3_+_85008089_85008189	0.00371767	SOX9	ENST00000383699.3|CADM2|ENSG00000175161.9|cell adhesion molecule 2
hg19_v2_chr2_-_208031542_208031595	0.00368087	SOX9	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr16_+_66400533_66400545	0.00357691	SOX9	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr5_-_141338627_141338627	0.00355586	SOX9	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr8_+_11660227_11660306	0.00354142	SOX9	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr17_+_36584662_36584730	0.00349551	SOX9	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr11_+_22694123_22694154	0.0034914	SOX9	ENST00000534801.1|GAS2|ENSG00000148935.6|growth arrest-specific 2
hg19_v2_chr7_+_2671568_2671606	0.00329985	SOX9	ENST00000258796.7|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr6_-_53213587_53213772	0.00322206	SOX9	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr2_-_107503558_107503580	0.00315174	SOX9	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr1_+_144339738_144339738	0.00293631	SOX9	ENST00000538264.1|AL592284.1|ENSG00000231360.2|Protein LOC642441
hg19_v2_chr22_-_19512893_19512946	0.00278788	SOX9	ENST00000403084.1|CLDN5|ENSG00000184113.8|claudin 5 	ENST00000413119.2|CLDN5|ENSG00000184113.8|claudin 5
hg19_v2_chr12_+_22778116_22778139	0.00274583	SOX9	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr7_+_16685756_16685820	0.00271151	SOX9	ENST00000415365.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000258761.3|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000433922.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000452975.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000405202.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2
hg19_v2_chr2_-_206950996_206951032	0.00245582	SOX9	ENST00000414320.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr10_-_128975273_128975273	0.00243626	SOX9	ENST00000424811.2|FAM196A|ENSG00000188916.4|family with sequence similarity 196, member A
hg19_v2_chr7_+_45039783_45039821	0.00238948	SOX9	ENST00000258781.6|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000541586.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000544363.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2
hg19_v2_chr10_+_63661053_63661079	0.0023597	SOX9	ENST00000279873.7|ARID5B|ENSG00000150347.10|AT rich interactive domain 5B (MRF1-like)
hg19_v2_chr2_-_204399976_204400011	0.00230267	SOX9	ENST00000457812.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr1_+_25071848_25071944	0.00229856	SOX9	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr11_-_71752571_71752598	0.00228912	SOX9	ENST00000544238.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr1_+_156119798_156119834	0.0020578	SOX9	ENST00000355014.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr15_+_41624892_41625111	0.00191587	SOX9	ENST00000260359.6|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000450318.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000450592.2|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000559596.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000414849.2|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000560747.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000560177.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1
hg19_v2_chr4_-_109090106_109090124	0.00178007	SOX9	ENST00000379951.2|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr11_-_125365435_125365561	0.00173282	SOX9	ENST00000524435.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr9_-_130517522_130517583	0.00157401	SOX9	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr18_+_3450161_3450210	0.00154194	SOX9	ENST00000551402.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000577543.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr11_-_35440579_35440617	0.00153052	SOX9	ENST00000606205.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr18_+_6729725_6730042	0.00152171	SOX9	ENST00000400091.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000583410.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000584387.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr9_-_124989804_124989865	0.00150127	SOX9	ENST00000373755.2|LHX6|ENSG00000106852.11|LIM homeobox 6 	ENST00000373754.2|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr4_-_76598296_76598318	0.00141639	SOX9	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr8_-_20161466_20161481	0.00137695	SOX9	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr3_+_9773409_9773479	0.00129893	SOX9	ENST00000433861.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000424362.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000383829.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000302054.3|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000420291.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1
hg19_v2_chr2_-_2334888_2335053	0.00108919	SOX9	ENST00000428368.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like 	ENST00000399161.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like
hg19_v2_chr12_-_31479107_31479142	0.000991931	SOX9	ENST00000542983.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chrX_-_106959631_106959775	0.000987089	SOX9	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr12_-_111358372_111358389	0.000890191	SOX9	ENST00000548438.1|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow 	ENST00000228841.8|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow
hg19_v2_chr5_+_140213815_140213969	0.000798807	SOX9	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr11_-_71752838_71752915	0.000776026	SOX9	ENST00000537930.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr2_-_111230393_111230393	0.000754295	SOX9	ENST00000447537.2|LIMS3L|ENSG00000257207.4|LIM and senescent cell antigen-like-containing domain protein 3; Uncharacterized protein; cDNA FLJ59124, highly similar to Particularly interesting newCys-His protein; cDNA, FLJ79109, highly similar to Particularly interesting newCys-His protein  	ENST00000413601.2|LIMS3L|ENSG00000256671.5|LIM and senescent cell antigen-like domains 3-like
hg19_v2_chr16_-_22385901_22385947	0.0006579	SOX9	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr10_-_129924611_129924662	0.000550147	SOX9	ENST00000368654.3|MKI67|ENSG00000148773.8|marker of proliferation Ki-67
hg19_v2_chr1_+_196743912_196743925	0.000437326	SOX9	ENST00000367425.4|CFHR3|ENSG00000116785.9|complement factor H-related 3
hg19_v2_chr12_+_53443963_53443970	0.000421283	SOX9	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chrY_+_15016013_15016029	0.000307825	SOX9	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr6_-_53213780_53213947	0.000266474	SOX9	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr16_-_53737722_53737790	0.000141571	SOX9	ENST00000569716.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562588.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562230.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000379925.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000563746.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000568653.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr19_+_45394477_45394546	0.000125808	SOX9	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chrX_+_84499081_84499115	8.98938e-05	SOX9	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
