hg19_v2_chr1_-_65533390_65533443	0.741827	SOX3_SOX2	ENST00000448344.1|RP4-535B20.1|ENSG00000231485.1|RP4-535B20.1
hg19_v2_chr3_-_148939598_148939622	0.727858	SOX3_SOX2	ENST00000455472.3|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr3_-_52719912_52719995	0.724426	SOX3_SOX2	ENST00000420148.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr6_-_108278456_108278544	0.717938	SOX3_SOX2	ENST00000429168.1|SEC63|ENSG00000025796.9|SEC63 homolog (S. cerevisiae)
hg19_v2_chr12_-_95611149_95611249	0.667924	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr12_+_95611569_95611608	0.640288	SOX3_SOX2	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr12_+_95611536_95611543	0.628796	SOX3_SOX2	ENST00000549002.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr1_+_209602156_209602183	0.605877	SOX3_SOX2	ENST00000429156.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000366437.3|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000603283.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000431096.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding)
hg19_v2_chr16_+_53242350_53242398	0.605836	SOX3_SOX2	ENST00000565442.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr4_+_26322987_26323031	0.585591	SOX3_SOX2	ENST00000505958.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr15_+_52311398_52311461	0.577415	SOX3_SOX2	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr4_+_95128996_95129056	0.57251	SOX3_SOX2	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr4_+_95129061_95129198	0.572051	SOX3_SOX2	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr12_+_95611516_95611527	0.567591	SOX3_SOX2	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr6_+_64282447_64282586	0.554249	SOX3_SOX2	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr3_-_4927447_4927479	0.551875	SOX3_SOX2	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr2_+_219283815_219283853	0.541093	SOX3_SOX2	ENST00000248444.5|VIL1|ENSG00000127831.6|villin 1 	ENST00000454069.1|VIL1|ENSG00000127831.6|villin 1 	ENST00000392114.2|VIL1|ENSG00000127831.6|villin 1
hg19_v2_chr1_-_26233423_26233482	0.528214	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr4_+_95128748_95128794	0.518525	SOX3_SOX2	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr22_+_27053567_27053585	0.514771	SOX3_SOX2	ENST00000449717.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000453023.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr2_-_47572207_47572229	0.50628	SOX3_SOX2	ENST00000441997.1|AC073283.4|ENSG00000234690.2|AC073283.4
hg19_v2_chr4_+_26323764_26323831	0.483606	SOX3_SOX2	ENST00000514730.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region 	ENST00000507574.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr14_-_35344093_35344138	0.476743	SOX3_SOX2	ENST00000382422.2|BAZ1A|ENSG00000198604.6|bromodomain adjacent to zinc finger domain, 1A
hg19_v2_chr4_+_95916947_95917006	0.466742	SOX3_SOX2	ENST00000506363.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr1_+_25071848_25071944	0.459061	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr16_+_53241854_53241953	0.457004	SOX3_SOX2	ENST00000565803.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr18_+_33161698_33161709	0.454432	SOX3_SOX2	ENST00000591924.1|GALNT1|ENSG00000141429.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
hg19_v2_chr2_+_46926326_46926452	0.448562	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr5_-_65018834_65018863	0.443017	SOX3_SOX2	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr12_-_42631529_42631602	0.442465	SOX3_SOX2	ENST00000548917.1|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chr15_-_52944231_52944268	0.430852	SOX3_SOX2	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr9_+_91003271_91003386	0.428218	SOX3_SOX2	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chr13_-_24007815_24007872	0.416279	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr11_-_94965667_94965705	0.41578	SOX3_SOX2	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr17_+_57297807_57297923	0.404816	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr3_+_164924716_164924750	0.40183	SOX3_SOX2	ENST00000470138.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2	ENST00000498616.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2
hg19_v2_chr3_-_52719888_52719908	0.40035	SOX3_SOX2	ENST00000458294.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr17_+_53046096_53046157	0.394459	SOX3_SOX2	ENST00000376352.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000299341.4|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000405898.1|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000434978.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000398391.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4
hg19_v2_chr8_+_61822605_61822618	0.393591	SOX3_SOX2	ENST00000526936.1|AC022182.1|ENSG00000254777.1|AC022182.1
hg19_v2_chr12_+_31079652_31079892	0.391604	SOX3_SOX2	ENST00000546076.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000535215.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000544427.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000261177.9|TSPAN11|ENSG00000110900.10|tetraspanin 11
hg19_v2_chr3_+_141105235_141105307	0.390848	SOX3_SOX2	ENST00000503809.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr10_-_99030395_99030434	0.390054	SOX3_SOX2	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr7_-_105925558_105925638	0.389988	SOX3_SOX2	ENST00000222553.3|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr3_-_148939835_148939842	0.379911	SOX3_SOX2	ENST00000264613.6|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chrX_-_139866723_139866723	0.370439	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr4_+_144303093_144303132	0.36877	SOX3_SOX2	ENST00000505913.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr21_+_30671690_30671762	0.367706	SOX3_SOX2	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr1_-_26232522_26232644	0.365856	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr21_-_16437126_16437205	0.364272	SOX3_SOX2	ENST00000318948.4|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr11_+_57365150_57365276	0.364209	SOX3_SOX2	ENST00000457869.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000340687.6|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378323.4|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378324.2|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000403558.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
hg19_v2_chr4_+_154387480_154387536	0.363857	SOX3_SOX2	ENST00000409663.3|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000440693.1|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000409959.3|KIAA0922|ENSG00000121210.11|KIAA0922
hg19_v2_chr6_-_86353510_86353595	0.363666	SOX3_SOX2	ENST00000444272.1|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr1_-_26232951_26232959	0.361797	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr9_+_124103625_124103625	0.359233	SOX3_SOX2	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr10_-_32217717_32217781	0.357956	SOX3_SOX2	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr1_-_115259337_115259515	0.356593	SOX3_SOX2	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr14_-_51027838_51027851	0.35261	SOX3_SOX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr12_+_95612006_95612042	0.349834	SOX3_SOX2	ENST00000551311.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000546445.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr6_+_56954867_56954882	0.341872	SOX3_SOX2	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr15_+_57210961_57211030	0.339759	SOX3_SOX2	ENST00000557843.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr12_+_65996599_65996667	0.330935	SOX3_SOX2	ENST00000539116.1|RP11-221N13.3|ENSG00000256268.1|RP11-221N13.3	ENST00000541391.1|RP11-221N13.3|ENSG00000256268.1|RP11-221N13.3
hg19_v2_chr6_+_13925098_13925163	0.330129	SOX3_SOX2	ENST00000488300.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000544682.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000420478.2|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr13_-_41593425_41593480	0.328286	SOX3_SOX2	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr6_+_122720681_122720713	0.325976	SOX3_SOX2	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr14_+_54976603_54976676	0.323467	SOX3_SOX2	ENST00000557317.1|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr3_+_52719936_52720057	0.319897	SOX3_SOX2	ENST00000418458.1|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar) 	ENST00000394799.2|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar)
hg19_v2_chr15_-_45459704_45459750	0.318694	SOX3_SOX2	ENST00000558039.1|CTD-2651B20.1|ENSG00000259539.1|CTD-2651B20.1
hg19_v2_chrX_+_80457442_80457501	0.318157	SOX3_SOX2	ENST00000373212.5|SH3BGRL|ENSG00000131171.8|SH3 domain binding glutamic acid-rich protein like
hg19_v2_chr4_+_141178440_141178472	0.314986	SOX3_SOX2	ENST00000394205.3|SCOC|ENSG00000153130.13|short coiled-coil protein
hg19_v2_chr17_+_65374075_65374271	0.312394	SOX3_SOX2	ENST00000581322.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr9_-_123476612_123476698	0.309959	SOX3_SOX2	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr12_-_105478339_105478361	0.309653	SOX3_SOX2	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr8_-_42752418_42752452	0.309218	SOX3_SOX2	ENST00000524954.1|RNF170|ENSG00000120925.9|ring finger protein 170
hg19_v2_chr2_+_46926048_46926095	0.307209	SOX3_SOX2	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr7_+_23146271_23146285	0.301524	SOX3_SOX2	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr3_-_57583052_57583079	0.299842	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr4_-_103266219_103266296	0.298028	SOX3_SOX2	ENST00000394833.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chrX_+_12993336_12993363	0.296273	SOX3_SOX2	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr12_+_124997766_124997772	0.294957	SOX3_SOX2	ENST00000543970.1|RP11-83B20.1|ENSG00000214650.2|RP11-83B20.1
hg19_v2_chr9_-_115249484_115249484	0.293644	SOX3_SOX2	ENST00000457681.1|C9orf147|ENSG00000230185.4|chromosome 9 open reading frame 147
hg19_v2_chr4_+_113152978_113152989	0.292515	SOX3_SOX2	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr15_+_93426514_93426562	0.291681	SOX3_SOX2	ENST00000556722.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr10_+_18948311_18948417	0.289846	SOX3_SOX2	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr2_-_165424973_165425010	0.288158	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr3_-_69402828_69402852	0.288151	SOX3_SOX2	ENST00000460709.1|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr5_-_114631958_114631990	0.28783	SOX3_SOX2	ENST00000395557.4|CCDC112|ENSG00000164221.8|coiled-coil domain containing 112
hg19_v2_chr6_+_13925318_13925424	0.281488	SOX3_SOX2	ENST00000423553.2|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000537388.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr3_-_52719810_52719883	0.279842	SOX3_SOX2	ENST00000424867.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000394830.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000431678.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000450271.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr11_-_46848393_46848439	0.279449	SOX3_SOX2	ENST00000526496.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr13_+_49684445_49684517	0.278961	SOX3_SOX2	ENST00000398316.3|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr14_-_80678512_80678529	0.277879	SOX3_SOX2	ENST00000553968.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr17_+_7608511_7608538	0.276947	SOX3_SOX2	ENST00000226091.2|EFNB3|ENSG00000108947.4|ephrin-B3
hg19_v2_chr8_-_17579726_17579759	0.275178	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr5_+_65222438_65222471	0.274882	SOX3_SOX2	ENST00000380938.2|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr1_-_91487013_91487070	0.274605	SOX3_SOX2	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr10_+_22605374_22605387	0.270268	SOX3_SOX2	ENST00000448361.1|COMMD3|ENSG00000148444.11|COMM domain containing 3
hg19_v2_chrX_-_134049262_134049297	0.269717	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr7_+_77167343_77167369	0.268825	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr2_-_165697717_165697784	0.268527	SOX3_SOX2	ENST00000439313.1|COBLL1|ENSG00000082438.11|cordon-bleu WH2 repeat protein-like 1
hg19_v2_chr1_-_226496898_226496955	0.268289	SOX3_SOX2	ENST00000481685.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr20_-_49547731_49547753	0.268216	SOX3_SOX2	ENST00000396029.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr14_-_50698276_50698304	0.267242	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr1_+_244998602_244998646	0.266038	SOX3_SOX2	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr6_+_100054606_100054606	0.264168	SOX3_SOX2	ENST00000369215.4|PRDM13|ENSG00000112238.11|PR domain containing 13
hg19_v2_chr10_+_70320413_70320413	0.262737	SOX3_SOX2	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr2_-_118943930_118943963	0.262376	SOX3_SOX2	ENST00000449075.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000414886.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000449819.1|AC093901.1|ENSG00000226856.1|AC093901.1
hg19_v2_chr21_-_16437255_16437340	0.261313	SOX3_SOX2	ENST00000400199.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1 	ENST00000400202.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr1_-_226496772_226496884	0.259485	SOX3_SOX2	ENST00000359525.2|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans) 	ENST00000460719.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr8_-_80993010_80993073	0.25653	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr7_-_6388389_6388531	0.256509	SOX3_SOX2	ENST00000578372.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr20_-_50418947_50418964	0.256335	SOX3_SOX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr6_+_119215308_119215391	0.25072	SOX3_SOX2	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chrX_-_15683147_15683159	0.249629	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chrX_+_119384607_119384720	0.248337	SOX3_SOX2	ENST00000326624.2|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33 	ENST00000557385.1|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33
hg19_v2_chr6_-_41040195_41040263	0.247572	SOX3_SOX2	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr16_+_9056563_9056590	0.24584	SOX3_SOX2	ENST00000564485.1|RP11-77H9.8|ENSG00000260979.1|RP11-77H9.8
hg19_v2_chr15_-_67439270_67439312	0.243716	SOX3_SOX2	ENST00000558463.1|RP11-342M21.2|ENSG00000259202.1|Uncharacterized protein
hg19_v2_chr1_-_108231101_108231133	0.243117	SOX3_SOX2	ENST00000544443.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000415432.2|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chr11_-_111781554_111781584	0.24105	SOX3_SOX2	ENST00000526167.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000528961.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr2_-_9143786_9143942	0.238454	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chrX_-_77395186_77395203	0.23836	SOX3_SOX2	ENST00000341864.5|TAF9B|ENSG00000187325.4|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
hg19_v2_chr2_+_169312725_169312810	0.23667	SOX3_SOX2	ENST00000392687.4|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr12_+_69979210_69979252	0.236506	SOX3_SOX2	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr10_-_14646388_14646417	0.235406	SOX3_SOX2	ENST00000468747.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378467.4|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr9_+_67968793_67968793	0.233981	SOX3_SOX2	ENST00000417488.1|RP11-195B21.3|ENSG00000155282.7|Protein LOC644249
hg19_v2_chr20_-_39317868_39317884	0.233784	SOX3_SOX2	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr4_+_95679072_95679125	0.233437	SOX3_SOX2	ENST00000515059.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr19_+_1452188_1452221	0.232847	SOX3_SOX2	ENST00000587149.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr14_+_54976546_54976602	0.232094	SOX3_SOX2	ENST00000216420.7|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr22_-_37880543_37880667	0.232065	SOX3_SOX2	ENST00000442496.1|MFNG|ENSG00000100060.13|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chr10_-_89577910_89578010	0.231351	SOX3_SOX2	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr7_+_7222233_7222327	0.229913	SOX3_SOX2	ENST00000436587.2|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr1_-_93645818_93645918	0.228576	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr16_+_68573640_68573698	0.228425	SOX3_SOX2	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr9_-_123476719_123476810	0.228372	SOX3_SOX2	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr10_+_22610876_22611035	0.227992	SOX3_SOX2	ENST00000442508.1|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr8_-_95449155_95449188	0.226884	SOX3_SOX2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr11_-_102323489_102323576	0.226619	SOX3_SOX2	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr7_-_32931623_32931756	0.226118	SOX3_SOX2	ENST00000452926.1|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr7_+_23145884_23145917	0.225421	SOX3_SOX2	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr11_+_65265141_65265306	0.225376	SOX3_SOX2	ENST00000534336.1|MALAT1|ENSG00000251562.3|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
hg19_v2_chrX_+_86772707_86772752	0.224974	SOX3_SOX2	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr9_-_74383302_74383437	0.223424	SOX3_SOX2	ENST00000377066.5|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chr18_+_20494078_20494108	0.222817	SOX3_SOX2	ENST00000579124.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000577588.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000582354.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000581819.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8
hg19_v2_chrX_-_47930980_47931034	0.222645	SOX3_SOX2	ENST00000442455.3|ZNF630|ENSG00000221994.6|zinc finger protein 630 	ENST00000428686.1|ZNF630|ENSG00000221994.6|zinc finger protein 630 	ENST00000276054.4|ZNF630|ENSG00000221994.6|zinc finger protein 630
hg19_v2_chr19_-_23433144_23433204	0.221072	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr7_+_107224364_107224391	0.221054	SOX3_SOX2	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr12_+_133614062_133614117	0.219191	SOX3_SOX2	ENST00000540031.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000536123.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr5_-_146833803_146833829	0.218063	SOX3_SOX2	ENST00000512722.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr12_-_46766577_46766650	0.216046	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr11_-_85430204_85430271	0.215765	SOX3_SOX2	ENST00000389958.3|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000527794.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr11_-_85430088_85430151	0.215623	SOX3_SOX2	ENST00000533057.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533892.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr2_-_158182105_158182171	0.214172	SOX3_SOX2	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr4_-_80994210_80994284	0.213777	SOX3_SOX2	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr1_-_200379180_200379191	0.213628	SOX3_SOX2	ENST00000294740.3|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr14_+_64971292_64971415	0.21355	SOX3_SOX2	ENST00000358738.3|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1 	ENST00000394712.2|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr12_-_89919220_89919392	0.213415	SOX3_SOX2	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr1_+_92632542_92632609	0.213285	SOX3_SOX2	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chr19_+_36705504_36705644	0.212731	SOX3_SOX2	ENST00000456324.1|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr12_+_69979446_69979471	0.212294	SOX3_SOX2	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr4_-_54424366_54424394	0.211038	SOX3_SOX2	ENST00000306888.2|LNX1|ENSG00000072201.9|ligand of numb-protein X 1, E3 ubiquitin protein ligase
hg19_v2_chr7_+_16793160_16793160	0.210381	SOX3_SOX2	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr8_+_79578282_79578334	0.20787	SOX3_SOX2	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr3_-_107596910_107596940	0.20668	SOX3_SOX2	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr8_+_104384616_104384661	0.206589	SOX3_SOX2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr17_-_37764128_37764258	0.206563	SOX3_SOX2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr6_+_53794780_53794844	0.206514	SOX3_SOX2	ENST00000505762.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000511369.1|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1	ENST00000431554.2|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1
hg19_v2_chr15_-_60771280_60771351	0.206262	SOX3_SOX2	ENST00000560072.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560406.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560520.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000261520.4|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000439632.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr8_-_17270809_17270848	0.205852	SOX3_SOX2	ENST00000180173.5|MTMR7|ENSG00000003987.9|myotubularin related protein 7 	ENST00000521857.1|MTMR7|ENSG00000003987.9|myotubularin related protein 7
hg19_v2_chr10_-_33247124_33247207	0.205535	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr4_+_25915896_25915931	0.205147	SOX3_SOX2	ENST00000514384.1|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr6_+_83777374_83777456	0.203952	SOX3_SOX2	ENST00000349129.2|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000237163.5|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000536812.1|DOPEY1|ENSG00000083097.10|dopey family member 1
hg19_v2_chr15_-_60771128_60771277	0.20323	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr17_-_27277615_27277700	0.202817	SOX3_SOX2	ENST00000583747.1|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584236.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr6_-_46620522_46620560	0.202656	SOX3_SOX2	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr4_-_103266355_103266371	0.202598	SOX3_SOX2	ENST00000424970.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr7_+_94537542_94537591	0.202112	SOX3_SOX2	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr6_-_41863098_41863120	0.201826	SOX3_SOX2	ENST00000373006.1|USP49|ENSG00000164663.9|ubiquitin specific peptidase 49
hg19_v2_chr3_+_44626446_44626477	0.201605	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr14_+_58862630_58862662	0.201077	SOX3_SOX2	ENST00000360945.2|TOMM20L|ENSG00000196860.3|translocase of outer mitochondrial membrane 20 homolog (yeast)-like
hg19_v2_chr4_-_169239921_169239972	0.20081	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr2_+_61293021_61293093	0.198955	SOX3_SOX2	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr15_+_77224045_77224121	0.198289	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chrX_+_153146127_153146127	0.198246	SOX3_SOX2	ENST00000452593.1|LCA10|ENSG00000196987.2|Putative lung carcinoma-associated protein 10  	ENST00000357566.1|LCA10|ENSG00000196987.2|Putative lung carcinoma-associated protein 10
hg19_v2_chr1_+_89990378_89990429	0.197374	SOX3_SOX2	ENST00000449440.1|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr1_-_243417762_243417788	0.196822	SOX3_SOX2	ENST00000522191.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr9_-_88896977_88897023	0.196661	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr12_-_104531785_104531812	0.196445	SOX3_SOX2	ENST00000551727.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chrX_+_135579238_135579416	0.195425	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr3_-_148804275_148804346	0.195194	SOX3_SOX2	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr7_+_111846741_111846776	0.194875	SOX3_SOX2	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr15_+_78730531_78730612	0.194257	SOX3_SOX2	ENST00000258886.8|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr6_+_80714332_80714551	0.194106	SOX3_SOX2	ENST00000502580.1|TTK|ENSG00000112742.5|TTK protein kinase 	ENST00000511260.1|TTK|ENSG00000112742.5|TTK protein kinase
hg19_v2_chr3_+_183353356_183353450	0.19385	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr3_+_107244229_107244254	0.193711	SOX3_SOX2	ENST00000456419.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402163.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr2_+_149402989_149402989	0.19359	SOX3_SOX2	ENST00000397424.2|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr1_-_28520384_28520393	0.193163	SOX3_SOX2	ENST00000305392.3|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr5_+_72112470_72112533	0.19312	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr11_-_130184555_130184581	0.192947	SOX3_SOX2	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr7_+_116312411_116312502	0.192734	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr8_+_82066514_82066565	0.191049	SOX3_SOX2	ENST00000519412.1|RP11-1149M10.2|ENSG00000253214.1|RP11-1149M10.2	ENST00000521953.1|RP11-1149M10.2|ENSG00000253214.1|RP11-1149M10.2
hg19_v2_chr10_+_103986085_103986085	0.191043	SOX3_SOX2	ENST00000370005.3|ELOVL3|ENSG00000119915.4|ELOVL fatty acid elongase 3
hg19_v2_chr6_-_41040268_41040353	0.190984	SOX3_SOX2	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr1_+_166808692_166808774	0.190549	SOX3_SOX2	ENST00000367876.4|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr5_+_49962495_49962577	0.190226	SOX3_SOX2	ENST00000515175.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr1_+_93913713_93913839	0.189798	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr2_-_14541060_14541087	0.189787	SOX3_SOX2	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr13_-_30881621_30881675	0.189345	SOX3_SOX2	ENST00000380615.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr11_+_114271251_114271300	0.188712	SOX3_SOX2	ENST00000375490.5|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr16_+_21608525_21608543	0.18686	SOX3_SOX2	ENST00000567404.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr4_+_78078304_78078406	0.186488	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr1_+_65886326_65886406	0.185993	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr11_+_13690200_13690244	0.185103	SOX3_SOX2	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr10_+_121578211_121578248	0.184927	SOX3_SOX2	ENST00000369080.3|INPP5F|ENSG00000198825.7|inositol polyphosphate-5-phosphatase F
hg19_v2_chr6_-_27440460_27440505	0.184042	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr5_-_58882219_58882337	0.183758	SOX3_SOX2	ENST00000505453.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000360047.5|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr11_+_125496619_125496646	0.183373	SOX3_SOX2	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr7_+_20370300_20370359	0.183355	SOX3_SOX2	ENST00000537992.1|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr5_+_111496631_111496703	0.181991	SOX3_SOX2	ENST00000508590.1|EPB41L4A-AS1|ENSG00000224032.2|EPB41L4A antisense RNA 1
hg19_v2_chr18_-_45456693_45456733	0.18145	SOX3_SOX2	ENST00000587421.1|SMAD2|ENSG00000175387.11|SMAD family member 2
hg19_v2_chr3_+_149689066_149689066	0.181319	SOX3_SOX2	ENST00000593416.1|AC117395.1|ENSG00000268175.1|LOC646903 protein; Uncharacterized protein
hg19_v2_chr1_+_47799542_47799624	0.180699	SOX3_SOX2	ENST00000471289.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 	ENST00000450808.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
hg19_v2_chr3_-_138312971_138313132	0.180528	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chrX_+_9433289_9433334	0.180393	SOX3_SOX2	ENST00000422314.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr3_+_52720187_52720196	0.179487	SOX3_SOX2	ENST00000474423.1|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar)
hg19_v2_chr16_-_71918033_71918107	0.17904	SOX3_SOX2	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr6_+_106535455_106535637	0.178456	SOX3_SOX2	ENST00000424894.1|PRDM1|ENSG00000057657.10|PR domain containing 1, with ZNF domain
hg19_v2_chr4_+_76649797_76650004	0.178216	SOX3_SOX2	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr15_-_50647347_50647366	0.178098	SOX3_SOX2	ENST00000220429.8|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000429662.2|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr3_+_149535022_149535031	0.176954	SOX3_SOX2	ENST00000466795.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr5_-_111092873_111092898	0.176611	SOX3_SOX2	ENST00000509025.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000515855.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr1_+_235491714_235491895	0.17515	SOX3_SOX2	ENST00000471812.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000358966.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000282841.5|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000391855.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr1_-_155880672_155880715	0.174842	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chrX_+_92929192_92929214	0.174339	SOX3_SOX2	ENST00000332647.4|FAM133A|ENSG00000179083.5|family with sequence similarity 133, member A
hg19_v2_chr1_+_205682497_205682497	0.173816	SOX3_SOX2	ENST00000598338.1|AC119673.1|ENSG00000268313.1|AC119673.1
hg19_v2_chr14_-_64971288_64971316	0.172487	SOX3_SOX2	ENST00000394715.1|ZBTB25|ENSG00000089775.7|zinc finger and BTB domain containing 25
hg19_v2_chr5_+_112074029_112074040	0.171859	SOX3_SOX2	ENST00000512211.2|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr9_-_125693757_125693818	0.171754	SOX3_SOX2	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr11_-_95522639_95522725	0.170785	SOX3_SOX2	ENST00000536839.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr6_+_87865262_87865339	0.170658	SOX3_SOX2	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr1_+_178482262_178482279	0.170363	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr6_+_134274354_134274371	0.169936	SOX3_SOX2	ENST00000367869.1|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr6_+_30848771_30848818	0.169811	SOX3_SOX2	ENST00000503180.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr5_-_150284351_150284443	0.169622	SOX3_SOX2	ENST00000427179.1|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr6_+_56954919_56955005	0.169611	SOX3_SOX2	ENST00000508603.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000491832.2|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370710.6|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr16_+_68573116_68573228	0.169378	SOX3_SOX2	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr4_+_90033968_90033968	0.168909	SOX3_SOX2	ENST00000317005.2|TIGD2|ENSG00000180346.2|tigger transposable element derived 2
hg19_v2_chr17_-_49337392_49337465	0.168839	SOX3_SOX2	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr12_+_57522692_57522751	0.168601	SOX3_SOX2	ENST00000554174.1|LRP1|ENSG00000123384.9|low density lipoprotein receptor-related protein 1
hg19_v2_chr4_+_78079450_78079563	0.168433	SOX3_SOX2	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr6_+_123100853_123100904	0.167954	SOX3_SOX2	ENST00000356535.4|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr7_+_111846643_111846704	0.167561	SOX3_SOX2	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr10_+_91174486_91174528	0.166224	SOX3_SOX2	ENST00000416601.1|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chrX_+_102469997_102470094	0.164796	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr9_-_103115135_103115183	0.164064	SOX3_SOX2	ENST00000537512.1|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr12_-_88974236_88974256	0.163739	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr2_-_39348137_39348212	0.163504	SOX3_SOX2	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr6_-_27440837_27440912	0.163305	SOX3_SOX2	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr16_+_58498177_58498193	0.163166	SOX3_SOX2	ENST00000567454.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr1_-_169555779_169555826	0.162873	SOX3_SOX2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr19_+_55888186_55888204	0.162698	SOX3_SOX2	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr7_+_116660246_116660336	0.162433	SOX3_SOX2	ENST00000434836.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393443.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000465133.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000477742.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393447.4|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393444.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr10_-_113943447_113943536	0.16163	SOX3_SOX2	ENST00000369425.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000348367.4|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000423155.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial
hg19_v2_chr1_-_167883327_167883352	0.16144	SOX3_SOX2	ENST00000476818.2|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367851.4|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367848.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr3_-_149510553_149510610	0.160633	SOX3_SOX2	ENST00000462519.2|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000446160.1|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000383050.3|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1
hg19_v2_chr17_+_57642886_57643006	0.160525	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr3_-_182698381_182698431	0.158967	SOX3_SOX2	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr2_-_73964447_73964527	0.15767	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chr6_-_75912508_75912580	0.157212	SOX3_SOX2	ENST00000416123.2|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr1_+_235490659_235490670	0.157087	SOX3_SOX2	ENST00000488594.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr2_-_55276320_55276334	0.156848	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr5_+_102455968_102456013	0.156697	SOX3_SOX2	ENST00000358359.3|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr4_+_52709229_52709345	0.156521	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr1_-_6546001_6546019	0.156178	SOX3_SOX2	ENST00000400913.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr5_+_76012009_76012024	0.156077	SOX3_SOX2	ENST00000505600.1|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr11_-_92930556_92930621	0.156044	SOX3_SOX2	ENST00000529184.1|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr7_-_35840198_35840245	0.155971	SOX3_SOX2	ENST00000412856.1|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000437235.3|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000424194.1|AC007551.3|ENSG00000228878.3|AC007551.3
hg19_v2_chr10_-_33246722_33246830	0.155693	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr12_-_31477072_31477110	0.15519	SOX3_SOX2	ENST00000454658.2|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr19_-_20844368_20844407	0.15504	SOX3_SOX2	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr19_-_37019136_37019178	0.154688	SOX3_SOX2	ENST00000592282.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr3_+_149531607_149531651	0.154666	SOX3_SOX2	ENST00000468648.1|RNF13|ENSG00000082996.15|ring finger protein 13 	ENST00000459632.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr20_+_19738792_19738884	0.154336	SOX3_SOX2	ENST00000412571.1|RP1-122P22.2|ENSG00000233895.1|RP1-122P22.2
hg19_v2_chr5_+_72112418_72112456	0.154331	SOX3_SOX2	ENST00000454282.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr5_-_27038683_27038700	0.154279	SOX3_SOX2	ENST00000511822.1|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin) 	ENST00000231021.4|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin)
hg19_v2_chr1_+_89990431_89990493	0.154205	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr18_-_28682374_28682415	0.154025	SOX3_SOX2	ENST00000280904.6|DSC2|ENSG00000134755.10|desmocollin 2
hg19_v2_chr4_-_184580304_184580351	0.153699	SOX3_SOX2	ENST00000510968.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000512740.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000327570.9|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr2_+_170590321_170590408	0.153552	SOX3_SOX2	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr12_+_69979113_69979155	0.152814	SOX3_SOX2	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr6_-_165989936_165989936	0.152602	SOX3_SOX2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr5_+_109025067_109025146	0.152506	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr11_-_85430163_85430200	0.151946	SOX3_SOX2	ENST00000529581.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533577.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr18_-_47013586_47013633	0.150574	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr1_-_154155675_154155709	0.150416	SOX3_SOX2	ENST00000330188.9|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341485.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr12_+_54378923_54378970	0.150144	SOX3_SOX2	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr21_-_40685477_40685496	0.15003	SOX3_SOX2	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr1_-_46598371_46598708	0.14989	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr2_+_207220463_207220463	0.149275	SOX3_SOX2	ENST00000598562.1|AC017081.1|ENSG00000269633.1|Uncharacterized protein
hg19_v2_chr4_-_164534657_164534701	0.148949	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr1_-_182360498_182360541	0.148769	SOX3_SOX2	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr19_-_48673465_48673543	0.148509	SOX3_SOX2	ENST00000598938.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr19_+_37960240_37960299	0.147114	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr14_+_57857262_57857334	0.147038	SOX3_SOX2	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr14_+_101293687_101293748	0.146776	SOX3_SOX2	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr12_-_76462713_76462773	0.145695	SOX3_SOX2	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr19_+_55795493_55795534	0.145557	SOX3_SOX2	ENST00000309383.1|BRSK1|ENSG00000160469.12|BR serine/threonine kinase 1
hg19_v2_chr22_+_37959647_37959668	0.14489	SOX3_SOX2	ENST00000415670.1|CDC42EP1|ENSG00000128283.6|CDC42 effector protein (Rho GTPase binding) 1
hg19_v2_chr3_-_138313161_138313198	0.144485	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr16_-_46864955_46864980	0.144278	SOX3_SOX2	ENST00000565112.1|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chrX_+_86772787_86772817	0.144007	SOX3_SOX2	ENST00000373114.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr14_-_50999307_50999367	0.143551	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr2_+_172949468_172949522	0.143492	SOX3_SOX2	ENST00000361609.4|DLX1|ENSG00000144355.10|distal-less homeobox 1 	ENST00000469444.2|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr3_-_149688502_149688526	0.143351	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr4_+_71588372_71588404	0.143258	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr5_+_110073853_110073866	0.142981	SOX3_SOX2	ENST00000513807.1|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46 	ENST00000509442.2|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46
hg19_v2_chr19_-_23578220_23578362	0.141671	SOX3_SOX2	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr5_-_65017921_65017968	0.14167	SOX3_SOX2	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr3_-_149688971_149689010	0.141643	SOX3_SOX2	ENST00000498307.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000489155.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr18_+_12703002_12703066	0.141158	SOX3_SOX2	ENST00000590217.1|PSMG2|ENSG00000128789.16|proteasome (prosome, macropain) assembly chaperone 2
hg19_v2_chrX_-_45629661_45629677	0.140912	SOX3_SOX2	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr6_+_43265992_43266003	0.140531	SOX3_SOX2	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr16_-_15736881_15736928	0.140145	SOX3_SOX2	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chrX_+_84498989_84499003	0.140128	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr7_+_77166592_77166653	0.139965	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr18_+_13726645_13726768	0.139384	SOX3_SOX2	ENST00000543302.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000383314.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000535051.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000592764.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000591746.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase
hg19_v2_chr6_-_105307417_105307435	0.139	SOX3_SOX2	ENST00000524020.1|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
hg19_v2_chr8_+_59323823_59323947	0.138954	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr1_+_227751231_227751273	0.138601	SOX3_SOX2	ENST00000343776.5|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000608949.1|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000397097.3|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr1_+_147400506_147400549	0.138529	SOX3_SOX2	ENST00000314163.7|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B 	ENST00000468618.2|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B
hg19_v2_chr14_-_82089405_82089428	0.138523	SOX3_SOX2	ENST00000554211.1|RP11-799P8.1|ENSG00000258977.1|RP11-799P8.1
hg19_v2_chr2_+_210518057_210518117	0.138471	SOX3_SOX2	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chrX_+_84499038_84499078	0.138396	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr21_+_38445539_38445596	0.138203	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr6_+_134274322_134274342	0.1382	SOX3_SOX2	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr11_-_102323740_102323780	0.13808	SOX3_SOX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr1_-_75198940_75199092	0.137981	SOX3_SOX2	ENST00000417775.1|CRYZ|ENSG00000116791.9|crystallin, zeta (quinone reductase)
hg19_v2_chr1_+_47137445_47137533	0.137963	SOX3_SOX2	ENST00000569393.1|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000334122.4|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000415500.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr3_+_23851928_23851951	0.13767	SOX3_SOX2	ENST00000467766.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1 	ENST00000424381.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr12_-_64784306_64784378	0.137591	SOX3_SOX2	ENST00000543259.1|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr2_+_201676908_201677120	0.137473	SOX3_SOX2	ENST00000409226.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000452790.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr5_+_130599701_130599716	0.137303	SOX3_SOX2	ENST00000395246.1|CDC42SE2|ENSG00000158985.9|CDC42 small effector 2
hg19_v2_chr4_-_103266626_103266647	0.137119	SOX3_SOX2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr6_+_151358048_151358110	0.136771	SOX3_SOX2	ENST00000450635.1|MTHFD1L|ENSG00000120254.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
hg19_v2_chr18_-_32924372_32924430	0.136539	SOX3_SOX2	ENST00000261332.6|ZNF24|ENSG00000172466.11|zinc finger protein 24 	ENST00000399061.3|ZNF24|ENSG00000172466.11|zinc finger protein 24
hg19_v2_chr14_+_97263641_97263764	0.136518	SOX3_SOX2	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr5_+_133707252_133707295	0.136044	SOX3_SOX2	ENST00000506787.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B 	ENST00000507277.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr5_+_93954039_93954052	0.136019	SOX3_SOX2	ENST00000265140.5|ANKRD32|ENSG00000133302.8|ankyrin repeat domain 32
hg19_v2_chr3_+_19988566_19988648	0.135739	SOX3_SOX2	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chrX_+_69642881_69642991	0.135617	SOX3_SOX2	ENST00000453994.2|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000536730.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000538649.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000374382.3|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2
hg19_v2_chr22_-_32555275_32555296	0.134869	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr15_+_57211318_57211355	0.134466	SOX3_SOX2	ENST00000557947.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr11_+_17316870_17316897	0.134225	SOX3_SOX2	ENST00000458064.2|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr13_-_36920615_36920659	0.134157	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr20_+_30598231_30598260	0.134024	SOX3_SOX2	ENST00000300415.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like 	ENST00000262659.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like
hg19_v2_chr3_-_195270162_195270209	0.133823	SOX3_SOX2	ENST00000438848.1|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2 	ENST00000328432.3|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2
hg19_v2_chr4_+_41614909_41614926	0.13343	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr15_+_57210818_57210930	0.133286	SOX3_SOX2	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr2_-_61765732_61765761	0.133153	SOX3_SOX2	ENST00000443240.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000436018.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chrX_-_135962876_135962896	0.133042	SOX3_SOX2	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr2_-_17981462_17981584	0.133021	SOX3_SOX2	ENST00000402989.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000428868.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr15_-_49338624_49338700	0.132905	SOX3_SOX2	ENST00000261847.3|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000380927.2|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000559424.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr21_-_40685504_40685516	0.132889	SOX3_SOX2	ENST00000380800.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr16_+_67063262_67063364	0.132876	SOX3_SOX2	ENST00000565389.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr4_+_144258288_144258353	0.132669	SOX3_SOX2	ENST00000514639.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr11_-_9336234_9336327	0.132547	SOX3_SOX2	ENST00000528080.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr1_-_63153944_63154110	0.132464	SOX3_SOX2	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr3_+_155588375_155588512	0.132279	SOX3_SOX2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr1_-_212004090_212004168	0.131919	SOX3_SOX2	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr1_+_152178320_152178334	0.131768	SOX3_SOX2	ENST00000429352.1|RP11-107M16.2|ENSG00000236427.1|RP11-107M16.2
hg19_v2_chr4_-_47465666_47465736	0.131575	SOX3_SOX2	ENST00000381571.4|COMMD8|ENSG00000169019.9|COMM domain containing 8
hg19_v2_chr8_-_66546439_66546451	0.131418	SOX3_SOX2	ENST00000276569.3|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr8_-_110346614_110346722	0.131334	SOX3_SOX2	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr8_+_86019382_86019487	0.131312	SOX3_SOX2	ENST00000360375.3|LRRCC1|ENSG00000133739.11|leucine rich repeat and coiled-coil centrosomal protein 1
hg19_v2_chr8_-_95487331_95487359	0.130397	SOX3_SOX2	ENST00000336148.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr12_-_103889731_103889754	0.130381	SOX3_SOX2	ENST00000552578.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548048.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000315192.8|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548883.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000378113.2|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42
hg19_v2_chr2_-_190649082_190649102	0.13032	SOX3_SOX2	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr2_-_9771075_9771153	0.130315	SOX3_SOX2	ENST00000446619.1|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 	ENST00000238081.3|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr5_-_179072047_179072047	0.130254	SOX3_SOX2	ENST00000448248.2|C5orf60|ENSG00000204661.5|chromosome 5 open reading frame 60
hg19_v2_chr1_+_244998918_244998975	0.129791	SOX3_SOX2	ENST00000366528.3|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr20_-_49547910_49547988	0.129728	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr2_-_9770706_9770753	0.129725	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr2_+_114647504_114647557	0.129546	SOX3_SOX2	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr1_+_227751281_227751298	0.12931	SOX3_SOX2	ENST00000440339.1|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr8_+_98656693_98656774	0.129271	SOX3_SOX2	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr13_+_39612442_39612482	0.129225	SOX3_SOX2	ENST00000470258.1|NHLRC3|ENSG00000188811.8|NHL repeat containing 3 	ENST00000379600.3|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr19_-_9695169_9695188	0.128618	SOX3_SOX2	ENST00000586602.1|ZNF121|ENSG00000197961.7|zinc finger protein 121
hg19_v2_chr1_+_97187318_97187380	0.1284	SOX3_SOX2	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr15_-_54051831_54051904	0.128398	SOX3_SOX2	ENST00000557913.1|WDR72|ENSG00000166415.10|WD repeat domain 72 	ENST00000360509.5|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr12_-_45270151_45270162	0.128283	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chrM_+_4431_4475	0.128095	SOX3_SOX2	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr15_-_43398274_43398318	0.127791	SOX3_SOX2	ENST00000382177.2|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1 	ENST00000290650.4|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1
hg19_v2_chr5_+_162930114_162930125	0.127767	SOX3_SOX2	ENST00000280969.5|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta
hg19_v2_chr14_+_96968802_96968895	0.127631	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr1_+_24286287_24286326	0.127545	SOX3_SOX2	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr1_-_243418344_243418356	0.127453	SOX3_SOX2	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr7_+_26438187_26438351	0.126923	SOX3_SOX2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr22_+_31742875_31742875	0.126779	SOX3_SOX2	ENST00000504184.2|AC005003.1|ENSG00000213888.2|CDNA FLJ20464 fis, clone KAT06158; HCG1777549; Uncharacterized protein
hg19_v2_chrX_+_17653413_17653413	0.126779	SOX3_SOX2	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr20_-_44176060_44176067	0.126603	SOX3_SOX2	ENST00000354280.4|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor 	ENST00000504988.1|EPPIN-WFDC6|ENSG00000249139.1|EPPIN-WFDC6 readthrough
hg19_v2_chr15_+_71184931_71184974	0.126381	SOX3_SOX2	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr6_+_46620676_46620696	0.126054	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr13_-_25496926_25497034	0.125542	SOX3_SOX2	ENST00000545981.1|CENPJ|ENSG00000151849.10|centromere protein J 	ENST00000381884.4|CENPJ|ENSG00000151849.10|centromere protein J
hg19_v2_chr10_-_104953009_104953061	0.125482	SOX3_SOX2	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr19_+_9732156_9732223	0.12548	SOX3_SOX2	ENST00000586614.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000587536.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000591056.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000592851.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82
hg19_v2_chr13_+_103451399_103451539	0.125288	SOX3_SOX2	ENST00000257336.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing 	ENST00000448849.2|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr4_+_164265035_164265091	0.125092	SOX3_SOX2	ENST00000338566.3|NPY5R|ENSG00000164129.7|neuropeptide Y receptor Y5
hg19_v2_chr8_+_63161550_63161633	0.125011	SOX3_SOX2	ENST00000328472.5|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr5_+_140480083_140480234	0.124842	SOX3_SOX2	ENST00000231130.2|PCDHB3|ENSG00000113205.2|protocadherin beta 3
hg19_v2_chr16_-_48419361_48419408	0.124718	SOX3_SOX2	ENST00000394725.2|SIAH1|ENSG00000196470.7|siah E3 ubiquitin protein ligase 1
hg19_v2_chrX_+_12993202_12993239	0.124449	SOX3_SOX2	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr14_-_67981870_67981913	0.124386	SOX3_SOX2	ENST00000555994.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr1_-_161168834_161168851	0.124335	SOX3_SOX2	ENST00000367995.3|ADAMTS4|ENSG00000158859.9|ADAM metallopeptidase with thrombospondin type 1 motif, 4 	ENST00000367996.5|ADAMTS4|ENSG00000158859.9|ADAM metallopeptidase with thrombospondin type 1 motif, 4
hg19_v2_chr16_+_21610797_21610850	0.124193	SOX3_SOX2	ENST00000358154.3|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr18_+_21718924_21718963	0.124014	SOX3_SOX2	ENST00000399496.3|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr3_-_197024965_197025038	0.12392	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr11_-_46141338_46141418	0.123879	SOX3_SOX2	ENST00000529782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000532010.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000525438.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000533757.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000527782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr17_+_63133587_63133627	0.123755	SOX3_SOX2	ENST00000449996.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9 	ENST00000262406.9|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr17_-_79359154_79359164	0.123716	SOX3_SOX2	ENST00000572077.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr3_-_171489085_171489158	0.123411	SOX3_SOX2	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr4_-_48782259_48782335	0.123288	SOX3_SOX2	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chrX_-_134049233_134049258	0.123105	SOX3_SOX2	ENST00000370779.4|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr10_+_70480963_70481010	0.122884	SOX3_SOX2	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr8_+_32579271_32579316	0.122801	SOX3_SOX2	ENST00000518084.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr7_-_105926058_105926185	0.12279	SOX3_SOX2	ENST00000417537.1|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr4_+_15683404_15683432	0.122697	SOX3_SOX2	ENST00000422728.2|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr12_+_22778116_22778139	0.122438	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr2_+_160590469_160590485	0.122284	SOX3_SOX2	ENST00000409591.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chrY_-_15591485_15591551	0.122248	SOX3_SOX2	ENST00000382896.4|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000537580.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000540140.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000545955.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000538878.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
hg19_v2_chr18_+_3252265_3252284	0.121962	SOX3_SOX2	ENST00000580887.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000536605.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr12_-_46662888_46662910	0.121822	SOX3_SOX2	ENST00000546893.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr1_-_193075180_193075244	0.121367	SOX3_SOX2	ENST00000367440.3|GLRX2|ENSG00000023572.4|glutaredoxin 2
hg19_v2_chrX_+_150866779_150866779	0.121244	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr7_+_30068260_30068301	0.121233	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr12_+_22778009_22778112	0.121125	SOX3_SOX2	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr10_+_91174314_91174403	0.120503	SOX3_SOX2	ENST00000371795.4|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr16_+_21610879_21610974	0.120425	SOX3_SOX2	ENST00000396014.4|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr8_-_97247759_97247862	0.120401	SOX3_SOX2	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr17_-_18585541_18585572	0.120351	SOX3_SOX2	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr14_-_23446003_23446019	0.119955	SOX3_SOX2	ENST00000553911.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr10_+_18429606_18429670	0.119773	SOX3_SOX2	ENST00000324631.7|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit 	ENST00000352115.6|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit 	ENST00000377328.1|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr10_+_14920843_14920921	0.119772	SOX3_SOX2	ENST00000433779.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000378325.3|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000354919.6|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000313519.5|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000420416.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila)
hg19_v2_chr1_-_28520447_28520453	0.119726	SOX3_SOX2	ENST00000539896.1|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chrX_-_85302531_85302570	0.119558	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr7_-_99774945_99775026	0.119435	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr4_-_175443943_175444049	0.119202	SOX3_SOX2	ENST00000296522.6|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr6_+_13925170_13925234	0.119137	SOX3_SOX2	ENST00000471906.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr5_-_39424961_39424980	0.118992	SOX3_SOX2	ENST00000503513.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr5_+_65018017_65018088	0.118879	SOX3_SOX2	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr12_-_45270077_45270143	0.118737	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr14_-_45603657_45603732	0.118252	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chrX_-_45060135_45060149	0.118049	SOX3_SOX2	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr14_+_32546145_32546239	0.117819	SOX3_SOX2	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr20_+_19738300_19738352	0.117522	SOX3_SOX2	ENST00000432334.1|RP1-122P22.2|ENSG00000233895.1|RP1-122P22.2
hg19_v2_chr12_+_64238539_64238600	0.117343	SOX3_SOX2	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chr10_+_180405_180429	0.117302	SOX3_SOX2	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr1_-_156828810_156828914	0.117218	SOX3_SOX2	ENST00000368195.3|INSRR|ENSG00000027644.4|insulin receptor-related receptor
hg19_v2_chr19_-_19739321_19739366	0.11716	SOX3_SOX2	ENST00000588461.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2
hg19_v2_chr15_+_63796779_63796863	0.117044	SOX3_SOX2	ENST00000561442.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000560070.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000540797.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000380324.3|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000268049.7|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000536001.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000539772.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3
hg19_v2_chr9_+_116638630_116638664	0.117033	SOX3_SOX2	ENST00000452710.1|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000374124.4|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr8_+_42196000_42196021	0.11698	SOX3_SOX2	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr17_+_68100989_68101026	0.116817	SOX3_SOX2	ENST00000585558.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392670.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr10_-_32667660_32667735	0.116761	SOX3_SOX2	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr12_+_14572070_14572164	0.116717	SOX3_SOX2	ENST00000545769.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000428217.2|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000396279.2|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000542514.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536279.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr11_+_196738_196779	0.116613	SOX3_SOX2	ENST00000325113.4|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3 	ENST00000342593.5|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3
hg19_v2_chr7_+_141463897_141463897	0.116445	SOX3_SOX2	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr15_-_52263937_52264003	0.116366	SOX3_SOX2	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr11_+_64058820_64058881	0.116346	SOX3_SOX2	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr1_+_66458072_66458109	0.116137	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr4_-_15656923_15657035	0.116131	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr11_-_105892937_105893130	0.115991	SOX3_SOX2	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr15_-_50647370_50647405	0.115909	SOX3_SOX2	ENST00000558970.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000396464.3|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000560825.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr8_-_124279627_124279627	0.115742	SOX3_SOX2	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr4_+_184580420_184580485	0.115546	SOX3_SOX2	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr8_-_73793975_73794038	0.115458	SOX3_SOX2	ENST00000523881.1|RP11-1145L24.1|ENSG00000253784.1|RP11-1145L24.1
hg19_v2_chr2_+_153191706_153191751	0.115423	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr21_-_40720974_40720994	0.115223	SOX3_SOX2	ENST00000380748.1|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr4_+_128702969_128702984	0.115208	SOX3_SOX2	ENST00000508776.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000439123.2|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr3_-_155011483_155011564	0.115192	SOX3_SOX2	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr13_+_97874574_97874609	0.115088	SOX3_SOX2	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chrX_-_77041685_77041716	0.115033	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr4_+_113152881_113152912	0.114574	SOX3_SOX2	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr16_+_70258261_70258261	0.114449	SOX3_SOX2	ENST00000594734.1|FKSG63|ENSG00000269866.1|FKSG63
hg19_v2_chr12_-_76879852_76879888	0.114431	SOX3_SOX2	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr4_+_153857468_153857520	0.1144	SOX3_SOX2	ENST00000511601.1|FHDC1|ENSG00000137460.4|FH2 domain containing 1
hg19_v2_chr1_+_212968025_212968164	0.114252	SOX3_SOX2	ENST00000530399.2|TATDN3|ENSG00000203705.6|TatD DNase domain containing 3
hg19_v2_chr4_-_106629796_106629863	0.113808	SOX3_SOX2	ENST00000416543.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000515819.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000420368.2|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000503746.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000340139.5|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000433009.1|INTS12|ENSG00000138785.10|integrator complex subunit 12
hg19_v2_chr11_-_13461790_13461826	0.113678	SOX3_SOX2	ENST00000530907.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr16_+_21623958_21624021	0.113647	SOX3_SOX2	ENST00000568826.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr4_+_69917078_69917101	0.113633	SOX3_SOX2	ENST00000502942.1|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr22_+_27053190_27053336	0.113594	SOX3_SOX2	ENST00000439738.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000422403.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000436238.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000425476.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000455640.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000451141.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000452429.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000423278.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr5_+_82767583_82767744	0.113485	SOX3_SOX2	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr6_-_130031358_130031378	0.113445	SOX3_SOX2	ENST00000368149.2|ARHGAP18|ENSG00000146376.6|Rho GTPase activating protein 18
hg19_v2_chr4_-_48908737_48908799	0.113364	SOX3_SOX2	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chrX_-_63425561_63425624	0.113318	SOX3_SOX2	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr14_+_24641820_24641937	0.113204	SOX3_SOX2	ENST00000560501.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr8_-_53477968_53478067	0.112888	SOX3_SOX2	ENST00000523939.1|FAM150A|ENSG00000196711.4|family with sequence similarity 150, member A 	ENST00000358543.4|FAM150A|ENSG00000196711.4|family with sequence similarity 150, member A
hg19_v2_chr5_+_65222500_65222601	0.112456	SOX3_SOX2	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr7_+_30960915_30961105	0.112249	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr2_-_238499131_238499206	0.112199	SOX3_SOX2	ENST00000538644.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr4_-_80993854_80993906	0.11206	SOX3_SOX2	ENST00000346652.6|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr14_-_88459503_88459615	0.111853	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr19_-_9695195_9695221	0.111617	SOX3_SOX2	ENST00000320451.6|ZNF121|ENSG00000197961.7|zinc finger protein 121
hg19_v2_chr17_+_72580818_72580818	0.111568	SOX3_SOX2	ENST00000524389.1|C17orf77|ENSG00000182352.4|chromosome 17 open reading frame 77
hg19_v2_chr10_-_65028938_65028989	0.111281	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr3_-_101232019_101232085	0.11091	SOX3_SOX2	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr2_-_198299726_198299815	0.110893	SOX3_SOX2	ENST00000409915.4|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000487698.1|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000414963.2|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000335508.6|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa
hg19_v2_chr7_-_99679324_99679371	0.110866	SOX3_SOX2	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr14_-_71107921_71108085	0.110853	SOX3_SOX2	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr19_-_58400148_58400364	0.110481	SOX3_SOX2	ENST00000595048.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000600634.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000595295.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000596604.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597342.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597807.1|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr4_+_57276661_57276682	0.110246	SOX3_SOX2	ENST00000598320.1|AC068620.1|ENSG00000268171.1|Uncharacterized protein
hg19_v2_chr6_-_24877490_24877583	0.110232	SOX3_SOX2	ENST00000540914.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B 	ENST00000378023.4|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr6_-_134639180_134639220	0.11023	SOX3_SOX2	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr4_+_141445333_141445362	0.110102	SOX3_SOX2	ENST00000507667.1|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr3_-_71114066_71114114	0.110092	SOX3_SOX2	ENST00000485326.2|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr17_-_49198216_49198236	0.110022	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr3_+_23847432_23847512	0.110002	SOX3_SOX2	ENST00000346855.3|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr1_-_169555709_169555730	0.109665	SOX3_SOX2	ENST00000546081.1|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr11_+_130184888_130184943	0.10948	SOX3_SOX2	ENST00000602376.1|RP11-121M22.1|ENSG00000175773.8|RP11-121M22.1	ENST00000532116.3|RP11-121M22.1|ENSG00000175773.8|RP11-121M22.1	ENST00000602310.1|RP11-121M22.1|ENSG00000175773.8|RP11-121M22.1
hg19_v2_chr10_-_25241499_25241541	0.109477	SOX3_SOX2	ENST00000376378.1|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000376376.3|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000320152.6|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1
hg19_v2_chrX_-_15872914_15873054	0.109435	SOX3_SOX2	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr17_-_49198095_49198119	0.109416	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr11_-_18813353_18813389	0.109062	SOX3_SOX2	ENST00000358540.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396171.4|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396167.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
hg19_v2_chr13_-_31039375_31039379	0.108922	SOX3_SOX2	ENST00000399494.1|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr7_+_7222157_7222193	0.108863	SOX3_SOX2	ENST00000419721.1|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr4_+_4388805_4388855	0.108703	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr7_+_12727250_12727265	0.108637	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr8_+_24151553_24151590	0.108591	SOX3_SOX2	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr11_+_94227129_94227195	0.108373	SOX3_SOX2	ENST00000540349.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000535502.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000545130.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000544253.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000541144.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49
hg19_v2_chr21_+_43934633_43934657	0.108009	SOX3_SOX2	ENST00000398343.2|SLC37A1|ENSG00000160190.9|solute carrier family 37 (glucose-6-phosphate transporter), member 1
hg19_v2_chr5_-_150284532_150284549	0.107992	SOX3_SOX2	ENST00000394226.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000446148.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000274599.5|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000418587.2|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr12_-_64784471_64784503	0.107938	SOX3_SOX2	ENST00000333722.5|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr4_+_156775910_156775941	0.107647	SOX3_SOX2	ENST00000506072.1|TDO2|ENSG00000151790.4|tryptophan 2,3-dioxygenase 	ENST00000507590.1|TDO2|ENSG00000151790.4|tryptophan 2,3-dioxygenase
hg19_v2_chr17_-_30669138_30669208	0.107628	SOX3_SOX2	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chrX_-_119603138_119603220	0.107563	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr2_-_70475701_70475717	0.107527	SOX3_SOX2	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr15_-_56035177_56035355	0.107495	SOX3_SOX2	ENST00000389286.4|PRTG|ENSG00000166450.8|protogenin 	ENST00000561292.1|PRTG|ENSG00000166450.8|protogenin
hg19_v2_chr8_+_86376081_86376142	0.107431	SOX3_SOX2	ENST00000285379.5|CA2|ENSG00000104267.5|carbonic anhydrase II
hg19_v2_chr14_+_21566980_21567097	0.107388	SOX3_SOX2	ENST00000418511.2|TMEM253|ENSG00000232070.4|transmembrane protein 253 	ENST00000554329.2|TMEM253|ENSG00000232070.4|transmembrane protein 253
hg19_v2_chr1_+_202163015_202163029	0.107387	SOX3_SOX2	ENST00000367278.3|LGR6|ENSG00000133067.13|leucine-rich repeat containing G protein-coupled receptor 6
hg19_v2_chr14_+_67707826_67707994	0.107383	SOX3_SOX2	ENST00000261681.4|MPP5|ENSG00000072415.4|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
hg19_v2_chr19_-_821931_821981	0.107309	SOX3_SOX2	ENST00000359894.2|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000520876.3|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000519502.1|LPPR3|ENSG00000129951.14|hsa-mir-3187
hg19_v2_chr14_+_32546274_32546295	0.106744	SOX3_SOX2	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr12_-_46384334_46384367	0.106433	SOX3_SOX2	ENST00000369367.3|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000266589.6|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395453.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395454.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11
hg19_v2_chr6_-_84937314_84937372	0.106347	SOX3_SOX2	ENST00000257766.4|KIAA1009|ENSG00000135315.7|KIAA1009 	ENST00000403245.3|KIAA1009|ENSG00000135315.7|KIAA1009
hg19_v2_chr12_-_52845910_52845938	0.106199	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr3_+_140947563_140947577	0.105915	SOX3_SOX2	ENST00000505013.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr11_+_120255997_120256048	0.105881	SOX3_SOX2	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr3_+_130613001_130613078	0.10568	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr4_-_184580353_184580378	0.105338	SOX3_SOX2	ENST00000326397.5|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr4_-_10458982_10459007	0.105283	SOX3_SOX2	ENST00000326756.3|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr18_+_21719018_21719061	0.105181	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr1_-_154155595_154155673	0.10469	SOX3_SOX2	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr2_+_24150180_24150202	0.104684	SOX3_SOX2	ENST00000404924.1|UBXN2A|ENSG00000173960.8|UBX domain protein 2A
hg19_v2_chr6_-_127664683_127664718	0.104684	SOX3_SOX2	ENST00000528402.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454591.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr1_+_93544821_93544868	0.10459	SOX3_SOX2	ENST00000370303.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr1_+_164528866_164528877	0.104503	SOX3_SOX2	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr2_-_37501692_37501747	0.104448	SOX3_SOX2	ENST00000443977.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr10_-_65028817_65028828	0.104429	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr14_+_96968707_96968788	0.104391	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr1_-_78149041_78149142	0.104357	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr1_+_97188188_97188273	0.104277	SOX3_SOX2	ENST00000541987.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr12_+_104359641_104359689	0.103954	SOX3_SOX2	ENST00000537100.1|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr16_+_67063142_67063153	0.103905	SOX3_SOX2	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr14_-_105071083_105071155	0.103674	SOX3_SOX2	ENST00000415614.2|TMEM179|ENSG00000258986.2|transmembrane protein 179
hg19_v2_chr2_-_61765315_61765422	0.103597	SOX3_SOX2	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr2_-_188430478_188430496	0.103324	SOX3_SOX2	ENST00000421427.1|TFPI|ENSG00000003436.10|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
hg19_v2_chr14_+_52456327_52456344	0.103172	SOX3_SOX2	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr1_+_66797687_66797884	0.10303	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr10_-_14596140_14596228	0.102674	SOX3_SOX2	ENST00000496330.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr4_-_83351294_83351417	0.102631	SOX3_SOX2	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr6_+_56954808_56954845	0.102412	SOX3_SOX2	ENST00000510483.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370706.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000357489.3|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr6_-_127664475_127664543	0.102341	SOX3_SOX2	ENST00000474289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000534442.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000368289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000525745.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000430841.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chrX_-_72434628_72434722	0.102254	SOX3_SOX2	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr6_-_127664736_127664773	0.102146	SOX3_SOX2	ENST00000368291.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000309620.9|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454859.3|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr3_-_8686479_8686486	0.102131	SOX3_SOX2	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr3_-_88108192_88108203	0.102114	SOX3_SOX2	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr3_+_20081515_20081570	0.102102	SOX3_SOX2	ENST00000263754.4|KAT2B|ENSG00000114166.7|K(lysine) acetyltransferase 2B
hg19_v2_chr7_+_29234101_29234130	0.101982	SOX3_SOX2	ENST00000435288.2|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr12_-_46663734_46663851	0.101641	SOX3_SOX2	ENST00000550173.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr1_+_93913665_93913705	0.10158	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr12_+_56477093_56477110	0.101528	SOX3_SOX2	ENST00000549672.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000415288.2|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr4_-_159080806_159080833	0.101521	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr1_-_235491462_235491534	0.101494	SOX3_SOX2	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr12_-_114211474_114211499	0.101429	SOX3_SOX2	ENST00000550905.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000547963.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr7_+_77167376_77167395	0.101217	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr1_-_145827015_145827103	0.101043	SOX3_SOX2	ENST00000534502.1|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000313835.9|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000454423.3|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A
hg19_v2_chr6_-_160210604_160210641	0.100961	SOX3_SOX2	ENST00000420894.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000539756.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000544255.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr5_-_89825328_89825422	0.100959	SOX3_SOX2	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chrX_+_9880412_9880550	0.10091	SOX3_SOX2	ENST00000418909.2|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr13_-_40924439_40924445	0.100888	SOX3_SOX2	ENST00000400432.3|RP11-172E9.2|ENSG00000230058.1|RP11-172E9.2
hg19_v2_chr14_+_35761580_35761679	0.100766	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr12_-_104531945_104531996	0.100345	SOX3_SOX2	ENST00000551446.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr16_-_71598823_71598992	0.10021	SOX3_SOX2	ENST00000566202.1|ZNF19|ENSG00000157429.11|zinc finger protein 19
hg19_v2_chr14_+_96343100_96343115	0.0999008	SOX3_SOX2	ENST00000503525.2|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr15_-_50647274_50647336	0.0998138	SOX3_SOX2	ENST00000543881.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr19_-_7553889_7553929	0.0997428	SOX3_SOX2	ENST00000221480.1|PEX11G|ENSG00000104883.3|peroxisomal biogenesis factor 11 gamma
hg19_v2_chr9_-_127905736_127905815	0.0996997	SOX3_SOX2	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr12_-_46662772_46662835	0.0996487	SOX3_SOX2	ENST00000549049.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000439706.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000398637.5|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr1_-_226065330_226065386	0.0995719	SOX3_SOX2	ENST00000436966.1|TMEM63A|ENSG00000196187.7|transmembrane protein 63A
hg19_v2_chrX_+_55744228_55744318	0.0993379	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr2_+_70121075_70121102	0.0992409	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chr13_-_36920420_36920574	0.0992313	SOX3_SOX2	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr9_+_116343192_116343225	0.0991817	SOX3_SOX2	ENST00000471324.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr18_+_29078131_29078218	0.0991678	SOX3_SOX2	ENST00000585206.1|DSG2|ENSG00000046604.8|desmoglein 2
hg19_v2_chr7_+_35840542_35840671	0.0989418	SOX3_SOX2	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr7_-_140178726_140178774	0.0986244	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr10_-_70231639_70231879	0.0986004	SOX3_SOX2	ENST00000551118.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000358410.3|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399180.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399179.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2
hg19_v2_chr9_-_5830768_5830787	0.0985773	SOX3_SOX2	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chr4_-_88141615_88141751	0.0985002	SOX3_SOX2	ENST00000545252.1|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000425278.2|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000498875.2|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr3_-_176914191_176914235	0.0984856	SOX3_SOX2	ENST00000437738.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000424913.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000443315.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr4_-_175443484_175443650	0.0980394	SOX3_SOX2	ENST00000514584.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000542498.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000296521.7|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000422112.2|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000504433.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr4_-_113558014_113558073	0.0979791	SOX3_SOX2	ENST00000503172.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000505019.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000309071.5|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr3_-_149688655_149688737	0.0977416	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr8_+_42873548_42873567	0.0975415	SOX3_SOX2	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chrX_-_73834449_73834481	0.0972209	SOX3_SOX2	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chrX_-_73512411_73512444	0.0971545	SOX3_SOX2	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr4_-_157892055_157892128	0.0969949	SOX3_SOX2	ENST00000422544.2|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr5_+_138678131_138678169	0.0969152	SOX3_SOX2	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr12_+_69080734_69080808	0.0967101	SOX3_SOX2	ENST00000378905.2|NUP107|ENSG00000111581.5|nucleoporin 107kDa
hg19_v2_chr11_+_114271367_114271401	0.0966349	SOX3_SOX2	ENST00000544582.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7 	ENST00000545678.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr5_-_111093759_111093915	0.0965081	SOX3_SOX2	ENST00000509979.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000513100.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000508161.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000455559.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr1_+_156119466_156119514	0.0964706	SOX3_SOX2	ENST00000414683.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr13_+_113656092_113656207	0.0963056	SOX3_SOX2	ENST00000397024.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr1_+_93645314_93645476	0.0962578	SOX3_SOX2	ENST00000343253.7|CCDC18|ENSG00000122483.13|coiled-coil domain containing 18
hg19_v2_chr6_-_80247140_80247175	0.0961407	SOX3_SOX2	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr2_-_197458323_197458416	0.0961085	SOX3_SOX2	ENST00000452031.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr20_+_21283941_21284007	0.0956341	SOX3_SOX2	ENST00000377191.3|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2 	ENST00000430571.2|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr13_+_39612485_39612599	0.0955852	SOX3_SOX2	ENST00000379599.2|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr10_+_22610124_22610188	0.0955243	SOX3_SOX2	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr14_+_50234827_50234886	0.0954528	SOX3_SOX2	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr3_-_57199397_57199432	0.0952068	SOX3_SOX2	ENST00000296318.7|IL17RD|ENSG00000144730.12|interleukin 17 receptor D
hg19_v2_chr7_+_106810165_106810374	0.0951489	SOX3_SOX2	ENST00000468401.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000497535.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000485846.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr3_+_141043050_141043063	0.0950741	SOX3_SOX2	ENST00000509842.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chrX_-_131352152_131352204	0.0950545	SOX3_SOX2	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr5_+_102455853_102455961	0.0950198	SOX3_SOX2	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr1_+_109419804_109419878	0.094986	SOX3_SOX2	ENST00000435475.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr16_-_85146040_85146114	0.0945374	SOX3_SOX2	ENST00000539556.1|FAM92B|ENSG00000153789.8|family with sequence similarity 92, member B
hg19_v2_chr3_+_48507621_48507689	0.0943977	SOX3_SOX2	ENST00000456089.1|TREX1|ENSG00000213689.5|three prime repair exonuclease 1
hg19_v2_chr15_+_52043758_52043809	0.0943574	SOX3_SOX2	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr2_-_204400013_204400058	0.0942021	SOX3_SOX2	ENST00000374489.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000374488.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000308091.4|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000453034.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000420371.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr7_-_42951509_42951904	0.094191	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chrX_+_69488174_69488202	0.0941769	SOX3_SOX2	ENST00000480877.2|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin) 	ENST00000307959.8|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr17_-_9939935_9939990	0.0941532	SOX3_SOX2	ENST00000580043.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr1_+_172389821_172389833	0.094109	SOX3_SOX2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr4_-_10459009_10459061	0.0940721	SOX3_SOX2	ENST00000507515.1|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr12_+_124457746_124457842	0.094032	SOX3_SOX2	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr8_+_124194752_124194835	0.0933873	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr5_+_140767452_140767452	0.0933673	SOX3_SOX2	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr11_-_85430356_85430420	0.0933043	SOX3_SOX2	ENST00000526999.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr1_-_63782888_63782904	0.0932752	SOX3_SOX2	ENST00000436475.2|LINC00466|ENSG00000224209.2|long intergenic non-protein coding RNA 466
hg19_v2_chr8_-_101965559_101965570	0.093223	SOX3_SOX2	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr2_+_33683109_33683132	0.0929246	SOX3_SOX2	ENST00000437184.1|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr4_-_57687847_57687911	0.0928261	SOX3_SOX2	ENST00000504762.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000248701.4|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000506738.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)
hg19_v2_chr3_+_193310918_193310934	0.0927766	SOX3_SOX2	ENST00000361908.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000392438.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361510.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361715.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361828.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361150.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr2_-_178128149_178128198	0.0927464	SOX3_SOX2	ENST00000423513.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr14_-_35099377_35099389	0.0926564	SOX3_SOX2	ENST00000362031.4|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr4_+_175204865_175204915	0.0925804	SOX3_SOX2	ENST00000505124.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr1_+_93544791_93544807	0.0925595	SOX3_SOX2	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr10_+_99349450_99349458	0.0925452	SOX3_SOX2	ENST00000370640.3|C10orf62|ENSG00000203942.3|chromosome 10 open reading frame 62
hg19_v2_chr5_-_102455801_102455855	0.0923868	SOX3_SOX2	ENST00000508629.1|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1 	ENST00000399004.2|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1
hg19_v2_chr3_+_44626359_44626387	0.0923629	SOX3_SOX2	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr2_-_86564740_86564756	0.0922659	SOX3_SOX2	ENST00000540790.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000428491.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr2_+_33172221_33172369	0.0921668	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr5_-_111091948_111091994	0.0921319	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr4_+_39046615_39046680	0.0919741	SOX3_SOX2	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr7_+_26191809_26191890	0.0919429	SOX3_SOX2	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr1_+_162467595_162467655	0.0915532	SOX3_SOX2	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chr3_+_132757215_132757261	0.0914521	SOX3_SOX2	ENST00000321871.6|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000393130.3|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000514894.1|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000512662.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr21_-_34144157_34144175	0.091385	SOX3_SOX2	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr3_+_107241882_107241904	0.0912736	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr1_-_84326229_84326241	0.0911981	SOX3_SOX2	ENST00000457273.1|RP11-475O6.1|ENSG00000233008.1|RP11-475O6.1
hg19_v2_chr22_-_22090043_22090058	0.0911497	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr1_+_169075554_169075571	0.091139	SOX3_SOX2	ENST00000367815.4|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr2_-_204399976_204400011	0.0909783	SOX3_SOX2	ENST00000457812.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chrX_-_47863348_47863412	0.0909047	SOX3_SOX2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr8_-_12612962_12613049	0.0908995	SOX3_SOX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr8_-_66753682_66753743	0.0907959	SOX3_SOX2	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr2_-_54197915_54197977	0.090629	SOX3_SOX2	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr10_-_91174215_91174314	0.0906109	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chr3_+_112930387_112930431	0.0905651	SOX3_SOX2	ENST00000485230.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr8_+_92114873_92114890	0.0904211	SOX3_SOX2	ENST00000343709.3|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69 	ENST00000448384.2|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69
hg19_v2_chr12_-_76817036_76817070	0.0902038	SOX3_SOX2	ENST00000546946.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr21_-_40685536_40685591	0.0900552	SOX3_SOX2	ENST00000341322.4|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr17_-_48207157_48207246	0.0900269	SOX3_SOX2	ENST00000330175.4|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14 	ENST00000503131.1|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14
hg19_v2_chr16_-_80926457_80926494	0.0898895	SOX3_SOX2	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr19_+_55043977_55044008	0.0896524	SOX3_SOX2	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr20_+_55108302_55108302	0.0895333	SOX3_SOX2	ENST00000371325.1|FAM209B|ENSG00000213714.1|family with sequence similarity 209, member B
hg19_v2_chr14_-_35099315_35099369	0.0892779	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr4_+_128554081_128554121	0.0891616	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr3_+_31574189_31574282	0.0891579	SOX3_SOX2	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr19_+_42254885_42254970	0.0891123	SOX3_SOX2	ENST00000595740.1|CEACAM6|ENSG00000086548.8|carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
hg19_v2_chr11_-_111649015_111649030	0.0890933	SOX3_SOX2	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr9_+_103189405_103189455	0.0889897	SOX3_SOX2	ENST00000395067.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr1_-_115300592_115300648	0.0888384	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr1_+_109419596_109419640	0.0887458	SOX3_SOX2	ENST00000435987.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2 	ENST00000264126.3|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr3_-_176914238_176914277	0.0886613	SOX3_SOX2	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr1_+_156119798_156119834	0.0882768	SOX3_SOX2	ENST00000355014.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr3_+_182983090_182983115	0.0882205	SOX3_SOX2	ENST00000465010.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr13_-_31736132_31736176	0.0880656	SOX3_SOX2	ENST00000429785.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr7_+_93690435_93690467	0.0879898	SOX3_SOX2	ENST00000438538.1|AC003092.1|ENSG00000236453.1|AC003092.1
hg19_v2_chr19_+_57791806_57791875	0.0879702	SOX3_SOX2	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr4_-_139163491_139163510	0.0877722	SOX3_SOX2	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr10_+_27793197_27793247	0.0877688	SOX3_SOX2	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr4_-_157892498_157892546	0.087741	SOX3_SOX2	ENST00000502773.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr5_-_39425222_39425283	0.0877123	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr4_+_71570430_71570536	0.0873046	SOX3_SOX2	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr8_+_107738240_107738340	0.0868873	SOX3_SOX2	ENST00000449762.2|OXR1|ENSG00000164830.13|oxidation resistance 1 	ENST00000297447.6|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr6_-_7313381_7313458	0.0868768	SOX3_SOX2	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr1_+_111992064_111992142	0.0868728	SOX3_SOX2	ENST00000483994.1|ATP5F1|ENSG00000116459.6|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1
hg19_v2_chr3_+_69985734_69985754	0.0868089	SOX3_SOX2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr11_-_95522907_95522989	0.0867799	SOX3_SOX2	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr1_+_35734616_35734642	0.0865242	SOX3_SOX2	ENST00000441447.1|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr8_+_110346546_110346619	0.0864822	SOX3_SOX2	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr4_+_25915822_25915893	0.0864319	SOX3_SOX2	ENST00000506197.2|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr4_+_78079570_78079586	0.0863878	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr4_+_144258021_144258052	0.0863652	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr15_-_78111788_78111799	0.086224	SOX3_SOX2	ENST00000566711.1|LINGO1|ENSG00000169783.8|leucine rich repeat and Ig domain containing 1
hg19_v2_chr16_-_21452040_21452040	0.0861722	SOX3_SOX2	ENST00000521589.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr12_+_120907622_120907696	0.0861022	SOX3_SOX2	ENST00000392509.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549649.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548342.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr16_-_46865047_46865103	0.086064	SOX3_SOX2	ENST00000394806.2|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr6_+_30848740_30848768	0.0860099	SOX3_SOX2	ENST00000505534.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr2_-_235405168_235405277	0.085903	SOX3_SOX2	ENST00000339728.3|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr22_-_20138302_20138399	0.0858596	SOX3_SOX2	ENST00000540078.1|AC006547.14|ENSG00000234409.4|uncharacterized protein LOC388849  	ENST00000439765.2|AC006547.14|ENSG00000234409.4|uncharacterized protein LOC388849
hg19_v2_chr16_+_4606347_4606491	0.0857995	SOX3_SOX2	ENST00000444310.4|C16orf96|ENSG00000205832.7|chromosome 16 open reading frame 96
hg19_v2_chrX_-_46404811_46404876	0.0856296	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chr18_+_32558380_32558399	0.0855075	SOX3_SOX2	ENST00000588349.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr6_+_170190417_170190475	0.085416	SOX3_SOX2	ENST00000420557.2|LINC00574|ENSG00000231690.2|long intergenic non-protein coding RNA 574
hg19_v2_chr20_+_21284416_21284490	0.0854138	SOX3_SOX2	ENST00000539513.1|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr15_+_86098670_86098685	0.0852284	SOX3_SOX2	ENST00000558811.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr3_-_57583130_57583152	0.0850853	SOX3_SOX2	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr12_-_99288536_99288677	0.08504	SOX3_SOX2	ENST00000549797.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000333732.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000341752.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr15_-_38519066_38519111	0.0847991	SOX3_SOX2	ENST00000561320.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1	ENST00000561161.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1
hg19_v2_chr5_+_70751442_70751456	0.08479	SOX3_SOX2	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr15_-_52043722_52043782	0.0846713	SOX3_SOX2	ENST00000454181.2|LYSMD2|ENSG00000140280.9|LysM, putative peptidoglycan-binding, domain containing 2
hg19_v2_chr2_-_201828356_201828412	0.0846196	SOX3_SOX2	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr12_-_104532062_104532071	0.0845696	SOX3_SOX2	ENST00000240055.3|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr2_-_107503558_107503580	0.0845474	SOX3_SOX2	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr9_-_117420052_117420092	0.0843709	SOX3_SOX2	ENST00000423632.1|RP11-402G3.5|ENSG00000230054.1|RP11-402G3.5
hg19_v2_chr3_+_130612803_130612877	0.0843336	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr14_-_63974941_63974962	0.0843053	SOX3_SOX2	ENST00000422769.2|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr3_+_73045936_73046128	0.0842208	SOX3_SOX2	ENST00000356692.5|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000488810.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000394284.3|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000295862.9|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000495566.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2
hg19_v2_chr1_+_100111580_100111773	0.0842186	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr6_-_128841503_128841870	0.0841212	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr11_+_125365110_125365110	0.0839571	SOX3_SOX2	ENST00000527818.1|AP000708.1|ENSG00000255537.1|AP000708.1
hg19_v2_chr7_-_148725544_148725630	0.083778	SOX3_SOX2	ENST00000413966.1|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr5_+_34656569_34656588	0.0836899	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr2_+_162101247_162101266	0.0836116	SOX3_SOX2	ENST00000439050.1|AC009299.3|ENSG00000227403.1|AC009299.3	ENST00000436506.1|AC009299.3|ENSG00000227403.1|AC009299.3
hg19_v2_chr2_+_223536428_223536505	0.0835767	SOX3_SOX2	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr1_+_213123976_213124009	0.0835515	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr6_+_44355257_44355315	0.0834676	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chrX_+_71401570_71401644	0.0834016	SOX3_SOX2	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr3_-_48601206_48601222	0.0833493	SOX3_SOX2	ENST00000273610.3|UCN2|ENSG00000145040.3|urocortin 2
hg19_v2_chr9_-_14313893_14313984	0.0832027	SOX3_SOX2	ENST00000380921.3|NFIB|ENSG00000147862.10|nuclear factor I/B 	ENST00000380959.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr15_+_52043813_52043864	0.0832	SOX3_SOX2	ENST00000435126.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr7_+_138145145_138145209	0.0830386	SOX3_SOX2	ENST00000415680.2|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr2_+_201677390_201677411	0.0829772	SOX3_SOX2	ENST00000447069.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr2_-_169769787_169769861	0.0829686	SOX3_SOX2	ENST00000451987.1|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr17_-_18585131_18585171	0.0827599	SOX3_SOX2	ENST00000443457.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000583002.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr8_+_42195972_42195991	0.082694	SOX3_SOX2	ENST00000532157.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000265421.4|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000520008.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr5_+_170288856_170288920	0.0826431	SOX3_SOX2	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr19_-_37958318_37958365	0.0826385	SOX3_SOX2	ENST00000316950.6|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000591710.1|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr3_-_114343768_114343822	0.0824525	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chrX_+_100646190_100646266	0.0824219	SOX3_SOX2	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr12_-_16760021_16760099	0.0824209	SOX3_SOX2	ENST00000540445.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr1_+_167298281_167298319	0.0821548	SOX3_SOX2	ENST00000367862.5|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr2_-_20550416_20550463	0.0819843	SOX3_SOX2	ENST00000403432.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2 	ENST00000424110.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr1_+_79115503_79115530	0.0819386	SOX3_SOX2	ENST00000370747.4|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000438486.1|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000545124.1|IFI44|ENSG00000137965.6|interferon-induced protein 44
hg19_v2_chr8_+_81398444_81398472	0.0818898	SOX3_SOX2	ENST00000455036.3|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10 	ENST00000426744.2|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr8_+_62200509_62200590	0.0818872	SOX3_SOX2	ENST00000519846.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000518592.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000325897.4|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr9_+_2622085_2622174	0.0817256	SOX3_SOX2	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr19_-_49864746_49864780	0.0816582	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr4_+_128703295_128703496	0.0813885	SOX3_SOX2	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr2_-_238499337_238499423	0.0810033	SOX3_SOX2	ENST00000411462.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family 	ENST00000409822.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr17_-_74639730_74639811	0.0808998	SOX3_SOX2	ENST00000589992.1|ST6GALNAC1|ENSG00000070526.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
hg19_v2_chr1_+_112298514_112298550	0.0808909	SOX3_SOX2	ENST00000536167.1|DDX20|ENSG00000064703.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
hg19_v2_chr8_-_6420759_6420775	0.0807335	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr12_+_133614119_133614166	0.0807238	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr9_-_102582155_102582189	0.0807102	SOX3_SOX2	ENST00000427039.1|RP11-554F20.1|ENSG00000237461.1|RP11-554F20.1
hg19_v2_chr4_+_15683369_15683390	0.0804933	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr3_-_149688896_149688970	0.080424	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr1_-_46152174_46152302	0.0803674	SOX3_SOX2	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr9_+_6413317_6413418	0.0803072	SOX3_SOX2	ENST00000276893.5|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 	ENST00000381373.3|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
hg19_v2_chr1_+_159141397_159141549	0.0801934	SOX3_SOX2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr12_-_133707021_133707071	0.0801893	SOX3_SOX2	ENST00000537226.1|ZNF891|ENSG00000214029.3|zinc finger protein 891
hg19_v2_chr8_+_86121448_86121494	0.0801716	SOX3_SOX2	ENST00000520225.1|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr4_-_100009856_100009902	0.0801326	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr3_-_123680246_123680264	0.0801038	SOX3_SOX2	ENST00000488653.2|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr9_-_115819039_115819082	0.0800413	SOX3_SOX2	ENST00000555206.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr13_-_60737898_60737910	0.079885	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr7_-_130353553_130353598	0.0798766	SOX3_SOX2	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr8_-_102218292_102218421	0.0798539	SOX3_SOX2	ENST00000518336.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000520454.1|ZNF706|ENSG00000120963.7|zinc finger protein 706
hg19_v2_chr2_-_197791441_197791525	0.0796594	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr5_+_138210919_138211157	0.0795779	SOX3_SOX2	ENST00000522013.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000520260.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000523298.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000520865.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519634.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000517533.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000523685.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519768.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000517656.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000521683.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000521640.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519116.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr5_+_76011868_76012005	0.0795327	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr1_+_25757376_25757411	0.0790846	SOX3_SOX2	ENST00000399766.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000399763.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000374343.4|TMEM57|ENSG00000204178.5|transmembrane protein 57
hg19_v2_chr6_+_20403997_20404034	0.0789513	SOX3_SOX2	ENST00000535432.1|E2F3|ENSG00000112242.10|E2F transcription factor 3
hg19_v2_chr11_-_2906979_2907111	0.0789141	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr3_+_130613226_130613485	0.0789019	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_+_185703513_185703683	0.0787642	SOX3_SOX2	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr12_+_94071341_94071493	0.0787281	SOX3_SOX2	ENST00000542893.2|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr3_+_107241783_107241850	0.0786928	SOX3_SOX2	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr15_-_93632421_93632446	0.0785849	SOX3_SOX2	ENST00000329082.7|RGMA|ENSG00000182175.9|repulsive guidance molecule family member a
hg19_v2_chr14_+_76776957_76777061	0.0785091	SOX3_SOX2	ENST00000512784.1|ESRRB|ENSG00000119715.10|estrogen-related receptor beta
hg19_v2_chr11_-_9336117_9336196	0.0784614	SOX3_SOX2	ENST00000527813.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B 	ENST00000533723.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr9_-_36401155_36401219	0.0779019	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr12_-_93835665_93835750	0.0777857	SOX3_SOX2	ENST00000552442.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N 	ENST00000550657.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr1_-_20755140_20755275	0.0777747	SOX3_SOX2	ENST00000418743.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141 	ENST00000426428.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141
hg19_v2_chr2_+_168725458_168725458	0.0776903	SOX3_SOX2	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr7_+_56119323_56119492	0.077677	SOX3_SOX2	ENST00000275603.4|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000335503.3|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000540286.1|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1)
hg19_v2_chr13_-_31038370_31038509	0.0776489	SOX3_SOX2	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr2_+_58655461_58655492	0.0774889	SOX3_SOX2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr11_-_114271139_114271247	0.0773575	SOX3_SOX2	ENST00000325636.4|C11orf71|ENSG00000180425.7|chromosome 11 open reading frame 71
hg19_v2_chr2_-_180129484_180129574	0.0773491	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr1_+_54411995_54412063	0.0771534	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr5_+_138677515_138677581	0.0770862	SOX3_SOX2	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr8_-_94752946_94753008	0.0770196	SOX3_SOX2	ENST00000519109.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr6_-_160210715_160210781	0.0770044	SOX3_SOX2	ENST00000392168.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000321394.7|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr5_-_130868688_130868736	0.07687	SOX3_SOX2	ENST00000504575.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000513227.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6
hg19_v2_chr2_-_70475586_70475646	0.0767537	SOX3_SOX2	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr9_-_103115185_103115235	0.0767499	SOX3_SOX2	ENST00000374902.4|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr7_+_44836276_44836283	0.0767086	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chrX_+_114827818_114827842	0.0766203	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr17_-_53046058_53046146	0.0765613	SOX3_SOX2	ENST00000571584.1|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast) 	ENST00000299335.3|COX11|ENSG00000166260.6|cytochrome c oxidase assembly homolog 11 (yeast)
hg19_v2_chr4_-_155511887_155511918	0.0765323	SOX3_SOX2	ENST00000302053.3|FGA|ENSG00000171560.10|fibrinogen alpha chain 	ENST00000403106.3|FGA|ENSG00000171560.10|fibrinogen alpha chain
hg19_v2_chr17_-_18950950_18950950	0.0762586	SOX3_SOX2	ENST00000284154.5|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr19_-_55691377_55691406	0.0762185	SOX3_SOX2	ENST00000589172.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr11_+_114271314_114271365	0.0760161	SOX3_SOX2	ENST00000541475.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr3_+_187871659_187871779	0.075974	SOX3_SOX2	ENST00000416784.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma 	ENST00000430340.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma 	ENST00000414139.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma 	ENST00000454789.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr3_+_141596371_141596516	0.0757278	SOX3_SOX2	ENST00000495216.1|ATP1B3|ENSG00000069849.6|ATPase, Na+/K+ transporting, beta 3 polypeptide
hg19_v2_chrX_-_13956497_13956536	0.0755575	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr11_-_117667806_117667976	0.0755297	SOX3_SOX2	ENST00000527706.1|DSCAML1|ENSG00000177103.9|Down syndrome cell adhesion molecule like 1 	ENST00000321322.6|DSCAML1|ENSG00000177103.9|Down syndrome cell adhesion molecule like 1
hg19_v2_chr19_+_52800410_52800454	0.075467	SOX3_SOX2	ENST00000595962.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000598016.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000334564.7|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000490272.1|ZNF480|ENSG00000198464.9|zinc finger protein 480
hg19_v2_chr1_+_200708671_200708744	0.0754617	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr2_-_128568721_128568766	0.0752841	SOX3_SOX2	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr1_-_247171347_247171395	0.0752819	SOX3_SOX2	ENST00000339986.7|ZNF695|ENSG00000197472.10|zinc finger protein 695 	ENST00000487338.2|ZNF695|ENSG00000197472.10|zinc finger protein 695
hg19_v2_chr3_-_120400960_120401030	0.0750843	SOX3_SOX2	ENST00000476082.2|HGD|ENSG00000113924.7|homogentisate 1,2-dioxygenase
hg19_v2_chr10_-_25012597_25012732	0.075047	SOX3_SOX2	ENST00000396432.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr2_+_210444142_210444194	0.074809	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr17_+_79761997_79762034	0.074557	SOX3_SOX2	ENST00000400723.3|GCGR|ENSG00000215644.5|glucagon receptor 	ENST00000570996.1|GCGR|ENSG00000215644.5|glucagon receptor
hg19_v2_chr2_-_190649023_190649081	0.0743447	SOX3_SOX2	ENST00000409519.1|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000458355.1|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr3_-_196987309_196987350	0.074118	SOX3_SOX2	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr14_-_67981916_67982021	0.0740998	SOX3_SOX2	ENST00000357461.2|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr7_-_30066233_30066332	0.0739906	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr12_-_15942503_15942514	0.0739698	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr3_-_69171708_69171723	0.0739276	SOX3_SOX2	ENST00000420581.2|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr6_+_101847105_101847154	0.0738858	SOX3_SOX2	ENST00000369137.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000318991.6|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr5_-_39425290_39425336	0.0738524	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr2_+_32288657_32288688	0.0733817	SOX3_SOX2	ENST00000345662.1|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr2_+_173955327_173955347	0.0732161	SOX3_SOX2	ENST00000422149.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr16_-_75529273_75529293	0.0731477	SOX3_SOX2	ENST00000390664.2|CHST6|ENSG00000183196.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
hg19_v2_chrX_-_24665353_24665382	0.0727736	SOX3_SOX2	ENST00000379144.2|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr11_-_46142615_46142729	0.0726596	SOX3_SOX2	ENST00000529734.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000323180.6|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr2_+_160568978_160569064	0.0725383	SOX3_SOX2	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr8_-_95908902_95908927	0.0724521	SOX3_SOX2	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr4_-_175443788_175443795	0.0724141	SOX3_SOX2	ENST00000541923.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr7_+_112262421_112262447	0.0723762	SOX3_SOX2	ENST00000453459.1|AC002463.3|ENSG00000223646.1|AC002463.3
hg19_v2_chr15_-_49338748_49338765	0.0722927	SOX3_SOX2	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr3_+_16926441_16926463	0.0722697	SOX3_SOX2	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr1_-_153538292_153538342	0.0722144	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr9_-_119162885_119162885	0.0721836	SOX3_SOX2	ENST00000445861.2|PAPPA-AS1|ENSG00000256040.1|PAPPA antisense RNA 1
hg19_v2_chr6_-_64029879_64029891	0.072149	SOX3_SOX2	ENST00000370658.5|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000485906.2|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000370657.4|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain
hg19_v2_chr12_+_16500037_16500076	0.0719868	SOX3_SOX2	ENST00000536371.1|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1 	ENST00000010404.2|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1
hg19_v2_chr6_+_84569359_84569445	0.071563	SOX3_SOX2	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr10_-_123687943_123687997	0.0715448	SOX3_SOX2	ENST00000540606.1|ATE1|ENSG00000107669.13|arginyltransferase 1 	ENST00000455628.1|ATE1|ENSG00000107669.13|arginyltransferase 1
hg19_v2_chr8_-_108510224_108510283	0.0714731	SOX3_SOX2	ENST00000517746.1|ANGPT1|ENSG00000154188.5|angiopoietin 1 	ENST00000297450.3|ANGPT1|ENSG00000154188.5|angiopoietin 1
hg19_v2_chr5_+_49962772_49962815	0.0714605	SOX3_SOX2	ENST00000281631.5|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000513738.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503665.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000514067.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503046.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr1_-_8086343_8086378	0.0714232	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr12_-_2966193_2966213	0.0713439	SOX3_SOX2	ENST00000382678.3|AC005841.1|ENSG00000206044.3|Uncharacterized protein ENSP00000372125
hg19_v2_chr2_+_183580954_183581049	0.0713309	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chrX_+_55744166_55744222	0.0711235	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr21_-_32716556_32716609	0.0708344	SOX3_SOX2	ENST00000455508.1|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr19_+_35606692_35606769	0.070806	SOX3_SOX2	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr11_+_66045634_66045710	0.0707436	SOX3_SOX2	ENST00000528852.1|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2 	ENST00000311445.6|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2
hg19_v2_chr5_+_102595119_102595142	0.0706781	SOX3_SOX2	ENST00000510890.1|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr15_-_70994612_70994652	0.0706263	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr8_-_101965146_101965236	0.0704989	SOX3_SOX2	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr2_+_99953816_99953894	0.0704928	SOX3_SOX2	ENST00000289371.6|EIF5B|ENSG00000158417.6|eukaryotic translation initiation factor 5B
hg19_v2_chr3_-_27525826_27525840	0.0704888	SOX3_SOX2	ENST00000454389.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000440156.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000437179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000446700.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000455077.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000435667.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000388777.4|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000425128.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr6_+_56911476_56911524	0.0704571	SOX3_SOX2	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr1_+_100818156_100818210	0.0704229	SOX3_SOX2	ENST00000336454.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr20_-_1165117_1165117	0.0704123	SOX3_SOX2	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr8_+_31497271_31497285	0.0702771	SOX3_SOX2	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr19_-_49362621_49362640	0.0701253	SOX3_SOX2	ENST00000594195.1|PLEKHA4|ENSG00000105559.7|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 	ENST00000595867.1|PLEKHA4|ENSG00000105559.7|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
hg19_v2_chr11_-_123525289_123525341	0.0699955	SOX3_SOX2	ENST00000392770.2|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000299333.3|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000530277.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chrX_+_114827851_114827872	0.0699907	SOX3_SOX2	ENST00000539310.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr5_+_43603229_43603356	0.0699677	SOX3_SOX2	ENST00000344920.4|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512996.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr11_-_2162162_2162246	0.0699617	SOX3_SOX2	ENST00000381389.1|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chrX_+_69488155_69488172	0.0699185	SOX3_SOX2	ENST00000374495.3|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr3_-_114173530_114173571	0.0696701	SOX3_SOX2	ENST00000470311.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr6_+_32132360_32132437	0.0696678	SOX3_SOX2	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr15_-_65281775_65281844	0.0695872	SOX3_SOX2	ENST00000433215.2|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000558415.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000557795.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome)
hg19_v2_chr13_+_45694583_45694696	0.0694888	SOX3_SOX2	ENST00000340473.6|GTF2F2|ENSG00000188342.7|general transcription factor IIF, polypeptide 2, 30kDa
hg19_v2_chr4_-_125633876_125633897	0.069446	SOX3_SOX2	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr6_+_46620705_46620732	0.0693908	SOX3_SOX2	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr9_+_123884038_123884096	0.0693212	SOX3_SOX2	ENST00000373847.1|CNTRL|ENSG00000119397.12|centriolin
hg19_v2_chr1_+_9005917_9005946	0.0692003	SOX3_SOX2	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr11_-_65640071_65640125	0.0691867	SOX3_SOX2	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr1_-_53018654_53018777	0.069155	SOX3_SOX2	ENST00000257177.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000355809.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000528642.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000470626.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000371544.3|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr12_-_54653313_54653416	0.0691335	SOX3_SOX2	ENST00000550411.1|CBX5|ENSG00000094916.9|chromobox homolog 5 	ENST00000439541.2|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr22_-_46450024_46450110	0.0691035	SOX3_SOX2	ENST00000396008.2|C22orf26|ENSG00000182257.5|chromosome 22 open reading frame 26 	ENST00000333761.1|C22orf26|ENSG00000182257.5|chromosome 22 open reading frame 26
hg19_v2_chr4_-_184243561_184243579	0.0690861	SOX3_SOX2	ENST00000514470.1|CLDN24|ENSG00000185758.7|claudin 24 	ENST00000541814.1|CLDN24|ENSG00000185758.7|claudin 24
hg19_v2_chr20_-_5591626_5591677	0.0689475	SOX3_SOX2	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr3_+_179280668_179280769	0.0688695	SOX3_SOX2	ENST00000429709.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000450518.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000392662.1|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000490364.1|ACTL6A|ENSG00000136518.12|actin-like 6A
hg19_v2_chr8_-_70745575_70745625	0.0688213	SOX3_SOX2	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr21_-_40720995_40721126	0.0687756	SOX3_SOX2	ENST00000380749.5|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr17_+_63133526_63133566	0.0687516	SOX3_SOX2	ENST00000443584.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr12_-_31478428_31478469	0.0685834	SOX3_SOX2	ENST00000543615.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr14_+_58797974_58798011	0.068559	SOX3_SOX2	ENST00000417477.2|ARID4A|ENSG00000032219.14|AT rich interactive domain 4A (RBP1-like)
hg19_v2_chr19_+_32836499_32836625	0.0684846	SOX3_SOX2	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr6_+_42531798_42531810	0.0683557	SOX3_SOX2	ENST00000372903.2|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372899.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372901.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chr12_-_54694807_54694905	0.0683203	SOX3_SOX2	ENST00000435572.2|NFE2|ENSG00000123405.9|nuclear factor, erythroid 2
hg19_v2_chr7_-_29234802_29234895	0.0681908	SOX3_SOX2	ENST00000449801.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000409850.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chr8_-_18541603_18541650	0.06819	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr22_+_27053422_27053488	0.0681102	SOX3_SOX2	ENST00000413665.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000421151.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000456129.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000430080.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr12_-_15942309_15942330	0.0680782	SOX3_SOX2	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr4_-_157892167_157892228	0.067946	SOX3_SOX2	ENST00000541126.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr2_-_38829768_38829825	0.0679305	SOX3_SOX2	ENST00000378915.3|HNRNPLL|ENSG00000143889.11|heterogeneous nuclear ribonucleoprotein L-like
hg19_v2_chr21_+_30672433_30672464	0.0679303	SOX3_SOX2	ENST00000451655.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr12_-_124456598_124456637	0.0678774	SOX3_SOX2	ENST00000539761.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92 	ENST00000539551.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92
hg19_v2_chr2_+_10262857_10262873	0.0677907	SOX3_SOX2	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr7_-_26904317_26904362	0.067738	SOX3_SOX2	ENST00000345317.2|SKAP2|ENSG00000005020.8|src kinase associated phosphoprotein 2
hg19_v2_chr7_+_134464414_134464429	0.0677	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr4_+_113558612_113558669	0.0676663	SOX3_SOX2	ENST00000505034.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7 	ENST00000324052.6|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr20_-_62610982_62611008	0.067658	SOX3_SOX2	ENST00000369886.3|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10 	ENST00000450107.1|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10
hg19_v2_chr2_-_198175495_198175525	0.0675054	SOX3_SOX2	ENST00000409153.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000409919.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000539527.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44
hg19_v2_chr4_-_48908822_48908845	0.0674371	SOX3_SOX2	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr8_+_104427581_104427677	0.0674331	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr16_+_24550857_24550878	0.0674116	SOX3_SOX2	ENST00000568015.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chrX_+_135579670_135579715	0.0673309	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr12_-_122711968_122712008	0.0672613	SOX3_SOX2	ENST00000485724.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr2_-_178128528_178128574	0.0670243	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr2_-_99347528_99347603	0.0669104	SOX3_SOX2	ENST00000393487.1|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr3_-_165555200_165555260	0.0668197	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr2_+_131513864_131513922	0.0667893	SOX3_SOX2	ENST00000458606.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3 	ENST00000423981.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
hg19_v2_chr17_-_72358001_72358085	0.0667039	SOX3_SOX2	ENST00000375366.3|BTBD17|ENSG00000204347.3|BTB (POZ) domain containing 17
hg19_v2_chr11_+_68228186_68228281	0.0666607	SOX3_SOX2	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr5_+_34656529_34656549	0.0666307	SOX3_SOX2	ENST00000513974.1|RAI14|ENSG00000039560.9|retinoic acid induced 14 	ENST00000512629.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr10_-_14614311_14614382	0.0663386	SOX3_SOX2	ENST00000479731.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000468492.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr17_-_7297519_7297593	0.0661881	SOX3_SOX2	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr5_+_110427983_110428087	0.0660615	SOX3_SOX2	ENST00000513710.2|WDR36|ENSG00000134987.7|WD repeat domain 36 	ENST00000505303.1|WDR36|ENSG00000134987.7|WD repeat domain 36
hg19_v2_chr4_+_71768043_71768095	0.0659575	SOX3_SOX2	ENST00000502869.1|MOB1B|ENSG00000173542.4|MOB kinase activator 1B 	ENST00000309395.2|MOB1B|ENSG00000173542.4|MOB kinase activator 1B 	ENST00000396051.2|MOB1B|ENSG00000173542.4|MOB kinase activator 1B
hg19_v2_chr12_+_133613878_133613924	0.0659467	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr1_+_150039369_150039444	0.0659002	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr20_-_48184638_48184694	0.065768	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr8_+_99076509_99076539	0.0657592	SOX3_SOX2	ENST00000318528.3|C8orf47|ENSG00000177459.6|chromosome 8 open reading frame 47
hg19_v2_chr5_+_179921344_179921423	0.0657195	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr7_+_12726623_12726750	0.0656608	SOX3_SOX2	ENST00000439721.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr1_-_6545502_6545548	0.0653964	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr5_+_74062806_74062840	0.0653405	SOX3_SOX2	ENST00000296802.5|NSA2|ENSG00000164346.5|NSA2 ribosome biogenesis homolog (S. cerevisiae)
hg19_v2_chr2_-_20550382_20550413	0.0652861	SOX3_SOX2	ENST00000536417.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr5_+_67588391_67588411	0.0649454	SOX3_SOX2	ENST00000523872.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr12_-_10282742_10282817	0.0647041	SOX3_SOX2	ENST00000298523.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000396484.2|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000310002.4|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr5_-_74062930_74062980	0.0645661	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr20_+_36149602_36149665	0.0643968	SOX3_SOX2	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr15_+_41136369_41136420	0.0642529	SOX3_SOX2	ENST00000563656.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr7_+_16828866_16828866	0.0641923	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr14_-_105531759_105531782	0.0640167	SOX3_SOX2	ENST00000329797.3|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000539291.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000392585.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132
hg19_v2_chr19_-_38720354_38720369	0.0639639	SOX3_SOX2	ENST00000416611.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chrY_-_15591818_15591919	0.0639299	SOX3_SOX2	ENST00000382893.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
hg19_v2_chr3_+_57094469_57094469	0.0639196	SOX3_SOX2	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr14_+_52456193_52456320	0.0637477	SOX3_SOX2	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr19_-_19626838_19626991	0.0636121	SOX3_SOX2	ENST00000360913.3|TSSK6|ENSG00000178093.12|testis-specific serine kinase 6
hg19_v2_chr19_-_8213753_8213753	0.0635382	SOX3_SOX2	ENST00000601739.1|FBN3|ENSG00000142449.8|fibrillin 3
hg19_v2_chr18_-_9614863_9614898	0.0634463	SOX3_SOX2	ENST00000584074.1|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr8_-_95487272_95487330	0.0634136	SOX3_SOX2	ENST00000297592.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr2_-_37551846_37551952	0.0632666	SOX3_SOX2	ENST00000443187.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr9_-_130517309_130517388	0.0631613	SOX3_SOX2	ENST00000414380.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr18_+_32820990_32821031	0.0631431	SOX3_SOX2	ENST00000601719.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000591206.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000330501.7|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000261333.6|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000355632.4|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000585800.1|ZNF397|ENSG00000186812.8|zinc finger protein 397
hg19_v2_chr2_-_161350305_161350391	0.0630486	SOX3_SOX2	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr17_-_39183452_39183468	0.0630386	SOX3_SOX2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr8_-_82644562_82644654	0.0630122	SOX3_SOX2	ENST00000520604.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000521742.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000520635.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1
hg19_v2_chr3_+_88108381_88108450	0.0627418	SOX3_SOX2	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr19_-_52150053_52150151	0.0627038	SOX3_SOX2	ENST00000599649.1|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000360844.6|SIGLEC14|ENSG00000254415.3|sialic acid binding Ig-like lectin 14 	ENST00000429354.3|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000222107.4|SIGLEC5|ENSG00000105501.7|sialic acid binding Ig-like lectin 5
hg19_v2_chr3_-_197025447_197025533	0.0626797	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr17_+_57232690_57232860	0.0626712	SOX3_SOX2	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr19_-_58400372_58400411	0.0626581	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chrX_-_122756660_122756696	0.0626394	SOX3_SOX2	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr10_-_14613968_14614048	0.062473	SOX3_SOX2	ENST00000488576.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000472095.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr2_+_113735575_113735606	0.0624083	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr2_+_120517174_120517207	0.0623834	SOX3_SOX2	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr2_-_84686552_84686624	0.0623712	SOX3_SOX2	ENST00000393868.2|SUCLG1|ENSG00000163541.7|succinate-CoA ligase, alpha subunit
hg19_v2_chr1_+_151739131_151739177	0.0622431	SOX3_SOX2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr1_-_32384693_32384724	0.0620878	SOX3_SOX2	ENST00000602683.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2 	ENST00000470404.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2
hg19_v2_chr5_-_74062867_74062912	0.0618765	SOX3_SOX2	ENST00000509097.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr3_-_123680047_123680112	0.0617697	SOX3_SOX2	ENST00000409697.3|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr8_-_29940464_29940486	0.0617003	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr12_+_104337515_104337574	0.0615652	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr10_-_81708854_81708867	0.061544	SOX3_SOX2	ENST00000372292.3|SFTPD|ENSG00000133661.11|surfactant protein D
hg19_v2_chr17_+_15602891_15603091	0.0614148	SOX3_SOX2	ENST00000421016.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000593105.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580259.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583566.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000472486.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000395894.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000581529.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000579694.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580393.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000585194.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583031.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000464847.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr4_-_140216948_140216999	0.0613874	SOX3_SOX2	ENST00000265500.4|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr7_+_12726474_12726542	0.0613787	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chrX_-_24665208_24665275	0.0613584	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr8_+_95835438_95835537	0.0613567	SOX3_SOX2	ENST00000521860.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519457.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519053.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000523731.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000447247.1|INTS8|ENSG00000164941.9|integrator complex subunit 8
hg19_v2_chr18_-_64271316_64271334	0.0613506	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr19_-_55874611_55874633	0.0613454	SOX3_SOX2	ENST00000424985.3|FAM71E2|ENSG00000180043.7|family with sequence similarity 71, member E2
hg19_v2_chr1_+_54703710_54703710	0.0613349	SOX3_SOX2	ENST00000361350.4|SSBP3-AS1|ENSG00000198711.4|SSBP3 antisense RNA 1
hg19_v2_chr12_+_99038998_99039078	0.0612033	SOX3_SOX2	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr14_-_88459182_88459236	0.0610739	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr19_+_21203426_21203475	0.0608146	SOX3_SOX2	ENST00000261560.5|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000599548.1|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000594110.1|ZNF430|ENSG00000118620.8|zinc finger protein 430
hg19_v2_chrX_-_128657457_128657477	0.0607993	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr17_-_62502022_62502074	0.0607461	SOX3_SOX2	ENST00000578804.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr6_+_150070831_150070856	0.0605875	SOX3_SOX2	ENST00000367380.5|PCMT1|ENSG00000120265.12|protein-L-isoaspartate (D-aspartate) O-methyltransferase
hg19_v2_chr9_-_110540419_110540419	0.0604296	SOX3_SOX2	ENST00000398726.3|AL162389.1|ENSG00000214645.3|Uncharacterized protein
hg19_v2_chr6_+_80341000_80341025	0.0604125	SOX3_SOX2	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chr7_+_87257854_87257931	0.0603514	SOX3_SOX2	ENST00000394654.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr6_-_80247105_80247133	0.0603438	SOX3_SOX2	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr5_-_38595498_38595514	0.0603206	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr7_+_29234028_29234043	0.0602792	SOX3_SOX2	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chrX_+_70435044_70435109	0.0600536	SOX3_SOX2	ENST00000374029.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000374022.3|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000447581.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr10_-_62332357_62332428	0.0600191	SOX3_SOX2	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr6_+_160183492_160183523	0.0599237	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr19_-_9811347_9811452	0.0599001	SOX3_SOX2	ENST00000585964.1|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000457674.2|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000590544.1|ZNF812|ENSG00000224689.3|zinc finger protein 812
hg19_v2_chr11_+_77184416_77184416	0.0598703	SOX3_SOX2	ENST00000598970.1|DKFZP434E1119|ENSG00000268635.1|DKFZP434E1119
hg19_v2_chr15_-_83876758_83876770	0.0598381	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr2_-_99485825_99485855	0.0597794	SOX3_SOX2	ENST00000423771.1|KIAA1211L|ENSG00000196872.6|KIAA1211-like
hg19_v2_chr8_-_18871159_18871201	0.0597719	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr3_-_195310802_195310818	0.0597604	SOX3_SOX2	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr6_+_31865552_31865575	0.0596436	SOX3_SOX2	ENST00000469372.1|C2|ENSG00000166278.10|complement component 2 	ENST00000497706.1|C2|ENSG00000166278.10|complement component 2
hg19_v2_chr2_-_171571077_171571077	0.0596025	SOX3_SOX2	ENST00000409786.1|AC007405.2|ENSG00000222033.1|long intergenic non-protein coding RNA 1124
hg19_v2_chr14_-_85996332_85996403	0.0595333	SOX3_SOX2	ENST00000380722.1|RP11-497E19.1|ENSG00000205562.1|RP11-497E19.1
hg19_v2_chr10_+_69644404_69644427	0.0594588	SOX3_SOX2	ENST00000212015.6|SIRT1|ENSG00000096717.7|sirtuin 1
hg19_v2_chr15_-_59225758_59225837	0.0594034	SOX3_SOX2	ENST00000558486.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000560682.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000249736.7|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000559880.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000536328.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator
hg19_v2_chr19_+_11466062_11466159	0.0593955	SOX3_SOX2	ENST00000251473.5|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000591329.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000586380.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr11_-_3400442_3400453	0.0593856	SOX3_SOX2	ENST00000429541.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000532539.1|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr10_-_35104185_35104267	0.0593013	SOX3_SOX2	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr2_+_105858200_105858200	0.0591817	SOX3_SOX2	ENST00000258456.1|GPR45|ENSG00000135973.1|G protein-coupled receptor 45
hg19_v2_chr9_-_73483926_73483945	0.0591111	SOX3_SOX2	ENST00000396283.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000361823.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr4_+_154125565_154125626	0.0590814	SOX3_SOX2	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr16_-_66519747_66519747	0.0589278	SOX3_SOX2	ENST00000544589.1|AC132186.1|ENSG00000247270.2|CDNA FLJ27243 fis, clone SYN08134; Uncharacterized protein
hg19_v2_chr4_+_57774042_57774114	0.0584857	SOX3_SOX2	ENST00000309042.7|REST|ENSG00000084093.11|RE1-silencing transcription factor
hg19_v2_chr19_-_37019562_37019593	0.0584743	SOX3_SOX2	ENST00000523638.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr12_-_50643664_50643679	0.0584423	SOX3_SOX2	ENST00000550592.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chr11_-_94227029_94227074	0.058413	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr1_-_114695537_114695602	0.0582743	SOX3_SOX2	ENST00000609117.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608879.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608203.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000609577.1|SYT6|ENSG00000134207.10|synaptotagmin VI
hg19_v2_chr22_+_38864041_38864150	0.0581072	SOX3_SOX2	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr4_-_83351005_83351019	0.0580939	SOX3_SOX2	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr14_-_57960456_57960478	0.0580641	SOX3_SOX2	ENST00000534126.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000422976.2|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr20_-_14318248_14318264	0.0579969	SOX3_SOX2	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr10_+_97759848_97759883	0.0579168	SOX3_SOX2	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr15_-_74043816_74043816	0.0579146	SOX3_SOX2	ENST00000379822.4|C15orf59|ENSG00000205363.4|chromosome 15 open reading frame 59
hg19_v2_chr10_+_180643_180764	0.0578595	SOX3_SOX2	ENST00000509513.2|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397959.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr9_+_107526443_107526477	0.0578595	SOX3_SOX2	ENST00000374762.3|NIPSNAP3B|ENSG00000165028.7|nipsnap homolog 3B (C. elegans)
hg19_v2_chrX_-_16730688_16730814	0.0578255	SOX3_SOX2	ENST00000359276.4|CTPS2|ENSG00000047230.10|CTP synthase 2
hg19_v2_chr13_-_31736478_31736525	0.0577553	SOX3_SOX2	ENST00000445273.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr17_-_9939854_9939889	0.057734	SOX3_SOX2	ENST00000584146.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr4_+_141445311_141445332	0.0576291	SOX3_SOX2	ENST00000323570.3|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2 	ENST00000511887.2|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr1_+_35734562_35734573	0.0575137	SOX3_SOX2	ENST00000314607.6|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4 	ENST00000373297.2|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr3_-_121740969_121741106	0.0575057	SOX3_SOX2	ENST00000393631.1|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000273691.3|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000344209.5|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1
hg19_v2_chr15_+_69373184_69373202	0.0574571	SOX3_SOX2	ENST00000558147.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000440444.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277
hg19_v2_chr3_+_43328004_43328095	0.0573477	SOX3_SOX2	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr19_+_11708259_11708309	0.0572982	SOX3_SOX2	ENST00000587939.1|ZNF627|ENSG00000198551.5|zinc finger protein 627 	ENST00000588174.1|ZNF627|ENSG00000198551.5|zinc finger protein 627
hg19_v2_chr12_+_133707161_133707202	0.0572876	SOX3_SOX2	ENST00000538918.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000540609.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000248211.6|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000543271.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000536877.1|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr19_+_1491144_1491223	0.05725	SOX3_SOX2	ENST00000233596.3|REEP6|ENSG00000115255.6|receptor accessory protein 6
hg19_v2_chr12_-_76953284_76953341	0.0570098	SOX3_SOX2	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr17_+_38171614_38171635	0.0570044	SOX3_SOX2	ENST00000583218.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394149.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr2_-_151344172_151344243	0.0569691	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr3_-_183735651_183735727	0.0569542	SOX3_SOX2	ENST00000427120.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000392579.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000382494.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000446941.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr12_+_113344582_113344745	0.0568162	SOX3_SOX2	ENST00000202917.5|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000445409.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000452357.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr17_-_49124230_49124248	0.0567507	SOX3_SOX2	ENST00000510283.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000510855.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr2_+_208394658_208394692	0.056589	SOX3_SOX2	ENST00000421139.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr2_+_32288725_32288776	0.0565513	SOX3_SOX2	ENST00000315285.3|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr2_+_210443993_210444094	0.0564923	SOX3_SOX2	ENST00000392193.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr13_+_113030658_113030702	0.0559977	SOX3_SOX2	ENST00000414180.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7 	ENST00000443541.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr6_+_155537771_155537868	0.0557897	SOX3_SOX2	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr3_-_87040233_87040257	0.055677	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr14_-_64971893_64971931	0.0556533	SOX3_SOX2	ENST00000555220.1|ZBTB25|ENSG00000089775.7|zinc finger and BTB domain containing 25
hg19_v2_chr14_-_31676674_31676707	0.0555683	SOX3_SOX2	ENST00000399332.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1 	ENST00000556224.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr19_+_37960466_37960478	0.0555513	SOX3_SOX2	ENST00000589725.1|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr4_-_113558079_113558145	0.0555367	SOX3_SOX2	ENST00000445203.2|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr8_-_27469383_27469483	0.0554188	SOX3_SOX2	ENST00000519742.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr1_-_26231589_26231635	0.0553814	SOX3_SOX2	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chrX_-_13956737_13956808	0.055359	SOX3_SOX2	ENST00000454189.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr18_+_55102917_55102985	0.0551047	SOX3_SOX2	ENST00000491143.2|ONECUT2|ENSG00000119547.5|one cut homeobox 2
hg19_v2_chr11_+_111807863_111807937	0.0550513	SOX3_SOX2	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr9_-_95298314_95298340	0.0550038	SOX3_SOX2	ENST00000344604.5|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific 	ENST00000375540.1|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr6_+_116442320_116442320	0.0549476	SOX3_SOX2	ENST00000430695.1|AL121963.1|ENSG00000234188.1|Uncharacterized protein
hg19_v2_chr10_+_70939983_70940044	0.0548712	SOX3_SOX2	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr7_+_29234375_29234558	0.0547684	SOX3_SOX2	ENST00000409350.1|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000495789.2|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000539389.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr11_-_89224638_89224653	0.0547552	SOX3_SOX2	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr18_-_61329118_61329197	0.0547184	SOX3_SOX2	ENST00000332821.8|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3 	ENST00000283752.5|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3
hg19_v2_chr12_+_133613937_133613994	0.0545428	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr5_-_168006591_168006638	0.0544677	SOX3_SOX2	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr20_-_36889127_36889174	0.0542789	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr20_+_34679725_34679774	0.0542141	SOX3_SOX2	ENST00000432589.1|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1
hg19_v2_chr1_+_172389836_172389874	0.0542124	SOX3_SOX2	ENST00000460397.2|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr5_+_134094461_134094494	0.0542117	SOX3_SOX2	ENST00000452510.2|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENST00000354283.4|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
hg19_v2_chr18_+_56532100_56532130	0.0541894	SOX3_SOX2	ENST00000588456.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589481.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000591049.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr8_-_20161466_20161481	0.0540783	SOX3_SOX2	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr15_+_84116106_84116283	0.0540054	SOX3_SOX2	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr8_-_30515693_30515776	0.0539285	SOX3_SOX2	ENST00000355904.4|GTF2E2|ENSG00000197265.4|general transcription factor IIE, polypeptide 2, beta 34kDa
hg19_v2_chr8_-_105601134_105601252	0.0539203	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr12_+_93963590_93963628	0.0539116	SOX3_SOX2	ENST00000340600.2|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr2_+_149402553_149402568	0.0538664	SOX3_SOX2	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr5_+_179921430_179921461	0.0537707	SOX3_SOX2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chrX_+_69509870_69509908	0.0536823	SOX3_SOX2	ENST00000374388.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr4_-_20985632_20985664	0.0536604	SOX3_SOX2	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr1_-_114355083_114355123	0.0534802	SOX3_SOX2	ENST00000261441.5|RSBN1|ENSG00000081019.9|round spermatid basic protein 1
hg19_v2_chr19_-_21950332_21950356	0.053183	SOX3_SOX2	ENST00000598026.1|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr7_+_129015671_129015685	0.053177	SOX3_SOX2	ENST00000466993.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr4_+_41614720_41614734	0.0530619	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr3_-_27525865_27525887	0.0529783	SOX3_SOX2	ENST00000445684.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr17_-_26926005_26926070	0.0528667	SOX3_SOX2	ENST00000536674.2|SPAG5|ENSG00000076382.12|sperm associated antigen 5
hg19_v2_chr15_+_57540230_57540239	0.0528389	SOX3_SOX2	ENST00000559703.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr9_-_130517522_130517583	0.0528197	SOX3_SOX2	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chrX_+_135229559_135229576	0.0527824	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr3_-_33700933_33701085	0.0527317	SOX3_SOX2	ENST00000480013.1|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr11_+_57531292_57531325	0.0526731	SOX3_SOX2	ENST00000524579.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1
hg19_v2_chr3_-_128294929_128294929	0.0526326	SOX3_SOX2	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr5_+_138089100_138089146	0.0526205	SOX3_SOX2	ENST00000520339.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000355078.5|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000302763.7|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000518910.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr8_+_39759794_39759899	0.0526003	SOX3_SOX2	ENST00000518804.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000519154.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522495.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522840.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1
hg19_v2_chr8_+_133787586_133787673	0.0525524	SOX3_SOX2	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr20_+_11898507_11898565	0.052503	SOX3_SOX2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr14_-_71276211_71276255	0.052204	SOX3_SOX2	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr10_+_72164135_72164135	0.0520348	SOX3_SOX2	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr3_-_141747439_141747452	0.0520049	SOX3_SOX2	ENST00000467667.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr2_-_153573887_153573930	0.0519464	SOX3_SOX2	ENST00000493468.2|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 	ENST00000545856.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr11_+_1889880_1889903	0.0517628	SOX3_SOX2	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr12_-_69080590_69080644	0.0515869	SOX3_SOX2	ENST00000433116.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2	ENST00000500695.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2
hg19_v2_chr1_-_45672221_45672260	0.0515186	SOX3_SOX2	ENST00000359600.5|ZSWIM5|ENSG00000162415.6|zinc finger, SWIM-type containing 5
hg19_v2_chr14_-_23284675_23284684	0.0515108	SOX3_SOX2	ENST00000555959.1|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr3_-_141747950_141748004	0.0512511	SOX3_SOX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr7_+_150076406_150076456	0.0512208	SOX3_SOX2	ENST00000329630.5|ZNF775|ENSG00000196456.4|zinc finger protein 775
hg19_v2_chr11_+_66624527_66624592	0.0510157	SOX3_SOX2	ENST00000393952.3|LRFN4|ENSG00000173621.8|leucine rich repeat and fibronectin type III domain containing 4
hg19_v2_chr2_+_210444748_210444770	0.0510048	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr2_+_203241531_203241659	0.0509023	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr20_+_42086525_42086568	0.0509007	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr12_+_7456880_7456880	0.0508184	SOX3_SOX2	ENST00000399422.4|ACSM4|ENSG00000215009.5|acyl-CoA synthetase medium-chain family member 4
hg19_v2_chr4_-_48908805_48908821	0.0508106	SOX3_SOX2	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr3_+_46616017_46616045	0.05059	SOX3_SOX2	ENST00000542931.1|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr19_-_17375527_17375538	0.0505658	SOX3_SOX2	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr15_+_78730622_78730646	0.0505563	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr2_+_210517895_210518021	0.0505386	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr3_-_105588231_105588396	0.0505236	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr12_-_12419703_12419811	0.0505192	SOX3_SOX2	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr15_-_65360276_65360338	0.0504826	SOX3_SOX2	ENST00000421977.3|RASL12|ENSG00000103710.6|RAS-like, family 12
hg19_v2_chr2_+_30370382_30370421	0.0504251	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr3_+_141106643_141106681	0.0504207	SOX3_SOX2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr7_-_32931387_32931509	0.0503211	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr6_-_75915757_75915775	0.0502695	SOX3_SOX2	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr1_+_16085263_16085314	0.0502624	SOX3_SOX2	ENST00000483633.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000502739.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000431771.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr12_-_50294033_50294044	0.0501327	SOX3_SOX2	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr2_-_178128250_178128300	0.0501281	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr9_-_92051391_92051403	0.0501089	SOX3_SOX2	ENST00000420681.2|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chr5_+_125935960_125935960	0.0498893	SOX3_SOX2	ENST00000297540.4|PHAX|ENSG00000164902.9|phosphorylated adaptor for RNA export
hg19_v2_chr2_-_109605663_109605828	0.0498653	SOX3_SOX2	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
hg19_v2_chr3_+_191046810_191046874	0.0497803	SOX3_SOX2	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr18_-_29340827_29340845	0.0497512	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr21_-_27107881_27107984	0.0497455	SOX3_SOX2	ENST00000400090.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400087.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400093.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr9_-_115774453_115774507	0.0497009	SOX3_SOX2	ENST00000427548.1|ZNF883|ENSG00000228623.2|zinc finger protein 883
hg19_v2_chr4_+_2819883_2819948	0.0496327	SOX3_SOX2	ENST00000511747.1|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2 	ENST00000503393.2|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2
hg19_v2_chr17_+_80416609_80416751	0.0496062	SOX3_SOX2	ENST00000577410.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr3_-_9005118_9005186	0.0495536	SOX3_SOX2	ENST00000264926.2|RAD18|ENSG00000070950.5|RAD18 homolog (S. cerevisiae)
hg19_v2_chr12_+_52203789_52203789	0.0494783	SOX3_SOX2	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr6_-_130536774_130536792	0.0494459	SOX3_SOX2	ENST00000532763.1|SAMD3|ENSG00000164483.12|sterile alpha motif domain containing 3
hg19_v2_chr5_+_102201509_102201528	0.0494418	SOX3_SOX2	ENST00000348126.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000379787.4|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr12_+_133656995_133657060	0.0492921	SOX3_SOX2	ENST00000356456.5|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr16_+_8814563_8814603	0.0492504	SOX3_SOX2	ENST00000425191.2|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase 	ENST00000569156.1|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase
hg19_v2_chr2_+_208576259_208576278	0.049201	SOX3_SOX2	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr12_-_71551868_71551882	0.0490946	SOX3_SOX2	ENST00000247829.3|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr10_+_30722866_30722969	0.0490862	SOX3_SOX2	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr7_+_7196565_7196714	0.0489651	SOX3_SOX2	ENST00000429911.1|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr4_-_28404486_28404533	0.0489503	SOX3_SOX2	ENST00000515720.1|RP11-180C1.1|ENSG00000250038.1|Uncharacterized protein
hg19_v2_chr19_-_44439387_44439419	0.0489174	SOX3_SOX2	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr8_-_101962777_101962805	0.0488485	SOX3_SOX2	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr8_-_119964434_119964445	0.0488291	SOX3_SOX2	ENST00000297350.4|TNFRSF11B|ENSG00000164761.4|tumor necrosis factor receptor superfamily, member 11b
hg19_v2_chr9_-_139345270_139345270	0.0488075	SOX3_SOX2	ENST00000398335.1|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr2_-_39664206_39664251	0.0487702	SOX3_SOX2	ENST00000484274.1|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3
hg19_v2_chr19_+_45204630_45204630	0.0487103	SOX3_SOX2	ENST00000405314.2|CEACAM16|ENSG00000213892.6|carcinoembryonic antigen-related cell adhesion molecule 16
hg19_v2_chr9_+_90497741_90497775	0.0486845	SOX3_SOX2	ENST00000325643.5|SPATA31E1|ENSG00000177992.9|SPATA31 subfamily E, member 1
hg19_v2_chr19_+_19779619_19779670	0.0486802	SOX3_SOX2	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr3_+_156008809_156008839	0.0486622	SOX3_SOX2	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr14_-_31495569_31495636	0.0486616	SOX3_SOX2	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr2_+_14772810_14772853	0.0486451	SOX3_SOX2	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr1_+_204494618_204494676	0.0485997	SOX3_SOX2	ENST00000367180.1|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse) 	ENST00000391947.2|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse)
hg19_v2_chr1_-_151119087_151119114	0.0485755	SOX3_SOX2	ENST00000341697.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENST00000368914.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
hg19_v2_chr1_-_200379129_200379174	0.048412	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr15_+_77223960_77223994	0.0484105	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr22_+_25595817_25595840	0.0483518	SOX3_SOX2	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chrX_-_10645773_10645795	0.0483287	SOX3_SOX2	ENST00000453318.2|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr7_-_105319536_105319611	0.0482573	SOX3_SOX2	ENST00000477775.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr10_+_106028923_106028956	0.0481391	SOX3_SOX2	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr4_+_144257915_144258009	0.0480891	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr11_-_111781454_111781513	0.0480662	SOX3_SOX2	ENST00000533280.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr10_-_62060232_62060246	0.0479977	SOX3_SOX2	ENST00000503925.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr19_+_21106081_21106207	0.0478866	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr6_+_123100620_123100763	0.0476069	SOX3_SOX2	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr1_-_23670813_23670816	0.047598	SOX3_SOX2	ENST00000374612.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr3_+_46618727_46618745	0.0475133	SOX3_SOX2	ENST00000296145.5|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr4_+_95972822_95972844	0.0474838	SOX3_SOX2	ENST00000509540.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB 	ENST00000440890.2|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr2_-_160472952_160473080	0.0474473	SOX3_SOX2	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr4_-_175204765_175204843	0.0472995	SOX3_SOX2	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr14_+_21467414_21467463	0.0472537	SOX3_SOX2	ENST00000554422.1|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2 	ENST00000298681.4|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2
hg19_v2_chr4_+_146402997_146403023	0.0471358	SOX3_SOX2	ENST00000512019.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chrX_-_140673133_140673133	0.0470924	SOX3_SOX2	ENST00000370519.3|SPANXA1|ENSG00000198021.5|sperm protein associated with the nucleus, X-linked, family member A1
hg19_v2_chr19_+_50194360_50194410	0.0469929	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chr12_+_49761147_49761167	0.0468117	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr8_+_107738343_107738413	0.046781	SOX3_SOX2	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr1_-_23670817_23670829	0.0466983	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr3_+_15643476_15643557	0.0466689	SOX3_SOX2	ENST00000436193.1|BTD|ENSG00000169814.8|biotinidase 	ENST00000383778.4|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr2_+_27719697_27719723	0.0466656	SOX3_SOX2	ENST00000264717.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator 	ENST00000424318.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator
hg19_v2_chr12_-_12491608_12491640	0.0466347	SOX3_SOX2	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr16_+_19222479_19222531	0.0464968	SOX3_SOX2	ENST00000568433.1|SYT17|ENSG00000103528.12|synaptotagmin XVII
hg19_v2_chr8_-_95220775_95220820	0.046399	SOX3_SOX2	ENST00000441892.2|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000521491.1|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000027335.3|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine)
hg19_v2_chr3_+_37440653_37440653	0.0462288	SOX3_SOX2	ENST00000328376.5|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35 	ENST00000452017.2|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35
hg19_v2_chr17_+_57233087_57233146	0.0462202	SOX3_SOX2	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr4_-_88141755_88141791	0.04621	SOX3_SOX2	ENST00000273963.5|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr15_-_94614049_94614115	0.0461483	SOX3_SOX2	ENST00000556447.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1	ENST00000555772.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1
hg19_v2_chr7_-_44229022_44229055	0.0460812	SOX3_SOX2	ENST00000403799.3|GCK|ENSG00000106633.11|glucokinase (hexokinase 4)
hg19_v2_chr19_-_55691472_55691551	0.046031	SOX3_SOX2	ENST00000537500.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr1_+_47881744_47881744	0.046019	SOX3_SOX2	ENST00000335071.2|FOXE3|ENSG00000186790.4|forkhead box E3
hg19_v2_chr12_-_56352368_56352387	0.0459494	SOX3_SOX2	ENST00000549404.1|PMEL|ENSG00000185664.10|premelanosome protein
hg19_v2_chr4_-_22517620_22517712	0.0457692	SOX3_SOX2	ENST00000502482.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125 	ENST00000334304.5|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr22_+_38382163_38382206	0.0456875	SOX3_SOX2	ENST00000333418.4|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000427034.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr11_+_10772534_10772573	0.0454959	SOX3_SOX2	ENST00000361367.2|CTR9|ENSG00000198730.3|CTR9, Paf1/RNA polymerase II complex component
hg19_v2_chrY_-_24242154_24242154	0.0454152	SOX3_SOX2	ENST00000303804.1|PRY2|ENSG00000169807.6|PTPN13-like, Y-linked 2 	ENST00000341740.2|PRY2|ENSG00000169807.6|PTPN13-like, Y-linked 2
hg19_v2_chr2_+_192110199_192110254	0.0453434	SOX3_SOX2	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr19_+_3880581_3880692	0.0451078	SOX3_SOX2	ENST00000450849.2|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000301260.6|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000398448.3|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type
hg19_v2_chr19_-_37958086_37958150	0.0450909	SOX3_SOX2	ENST00000592490.1|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000392149.2|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr3_-_64009658_64009687	0.0450537	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr5_+_15500280_15500312	0.0450439	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr21_-_34143971_34143983	0.0449122	SOX3_SOX2	ENST00000290178.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr14_+_58754751_58754751	0.0447725	SOX3_SOX2	ENST00000598233.1|AL132989.1|ENSG00000268466.1|AL132989.1
hg19_v2_chr7_+_30067973_30068063	0.0447638	SOX3_SOX2	ENST00000258679.7|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000449726.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396257.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396259.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr1_+_82165350_82165455	0.0444937	SOX3_SOX2	ENST00000359929.3|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr14_-_23285069_23285127	0.0444688	SOX3_SOX2	ENST00000554758.1|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 	ENST00000397528.4|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr7_+_99613212_99613236	0.0443396	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chrY_+_24636544_24636544	0.0442841	SOX3_SOX2	ENST00000303728.1|PRY|ENSG00000169789.6|PTPN13-like, Y-linked 	ENST00000338793.2|PRY|ENSG00000169789.6|PTPN13-like, Y-linked
hg19_v2_chr8_+_26435359_26435426	0.0441865	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr16_-_52580920_52580992	0.0441816	SOX3_SOX2	ENST00000219746.9|TOX3|ENSG00000103460.12|TOX high mobility group box family member 3
hg19_v2_chr8_-_139926236_139926269	0.0441593	SOX3_SOX2	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chr17_-_18950310_18950310	0.0440986	SOX3_SOX2	ENST00000573099.1|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr5_+_175223715_175223753	0.0440665	SOX3_SOX2	ENST00000515502.1|CPLX2|ENSG00000145920.10|complexin 2
hg19_v2_chr15_-_57210769_57210803	0.0440242	SOX3_SOX2	ENST00000559000.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr1_+_197886461_197886558	0.0440057	SOX3_SOX2	ENST00000367388.3|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000337020.2|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367387.4|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr12_-_12419905_12419989	0.0440052	SOX3_SOX2	ENST00000535731.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr1_+_90460661_90460745	0.0439618	SOX3_SOX2	ENST00000340281.4|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000361911.5|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000370447.3|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000455342.2|ZNF326|ENSG00000162664.12|zinc finger protein 326
hg19_v2_chr14_-_95624227_95624347	0.0439296	SOX3_SOX2	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chr13_+_113656047_113656068	0.0439196	SOX3_SOX2	ENST00000375597.4|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr6_-_15586238_15586256	0.0439085	SOX3_SOX2	ENST00000462989.2|DTNBP1|ENSG00000047579.15|dystrobrevin binding protein 1
hg19_v2_chr6_+_149068464_149068559	0.0437246	SOX3_SOX2	ENST00000367463.4|UST|ENSG00000111962.7|uronyl-2-sulfotransferase
hg19_v2_chr6_+_155443048_155443094	0.0435941	SOX3_SOX2	ENST00000535583.1|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr10_+_90672113_90672113	0.0435192	SOX3_SOX2	ENST00000371922.1|STAMBPL1|ENSG00000138134.7|STAM binding protein-like 1
hg19_v2_chr18_-_74844713_74844725	0.0433918	SOX3_SOX2	ENST00000397860.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr9_-_140142181_140142208	0.0433844	SOX3_SOX2	ENST00000484720.1|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr21_-_37270727_37270727	0.0432907	SOX3_SOX2	ENST00000599809.1|FKSG68|ENSG00000267812.1|FKSG68
hg19_v2_chr2_+_58655520_58655570	0.0432878	SOX3_SOX2	ENST00000455219.3|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000449448.2|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr6_-_116447283_116447325	0.0432248	SOX3_SOX2	ENST00000452729.1|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1 	ENST00000243222.4|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1
hg19_v2_chr11_+_32112431_32112454	0.0431907	SOX3_SOX2	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr2_+_210444298_210444343	0.0431653	SOX3_SOX2	ENST00000445941.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr15_-_47426320_47426320	0.0430051	SOX3_SOX2	ENST00000557832.1|FKSG62|ENSG00000259752.1|FKSG62
hg19_v2_chr3_-_49459865_49459876	0.0429858	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr3_+_193310969_193311053	0.0429649	SOX3_SOX2	ENST00000392437.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr12_+_49372251_49372398	0.0429516	SOX3_SOX2	ENST00000293549.3|WNT1|ENSG00000125084.7|wingless-type MMTV integration site family, member 1
hg19_v2_chr15_-_74659978_74660081	0.042891	SOX3_SOX2	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr10_+_18429671_18429887	0.0427731	SOX3_SOX2	ENST00000282343.8|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr6_-_111136299_111136352	0.042698	SOX3_SOX2	ENST00000457688.1|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr19_+_4279282_4279293	0.0426024	SOX3_SOX2	ENST00000599689.1|SHD|ENSG00000105251.6|Src homology 2 domain containing transforming protein D
hg19_v2_chr22_-_32341336_32341336	0.042591	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr3_+_38323785_38323789	0.0425613	SOX3_SOX2	ENST00000466887.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14 	ENST00000448498.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14
hg19_v2_chr19_+_23299777_23299844	0.0424622	SOX3_SOX2	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr16_+_16434185_16434185	0.0421147	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr10_+_82298088_82298088	0.0420246	SOX3_SOX2	ENST00000470604.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr6_+_28109703_28109716	0.0420138	SOX3_SOX2	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr3_+_42947600_42947680	0.0420004	SOX3_SOX2	ENST00000328199.6|ZNF662|ENSG00000182983.10|zinc finger protein 662 	ENST00000541208.1|ZNF662|ENSG00000182983.10|zinc finger protein 662
hg19_v2_chr6_+_44215603_44215666	0.0418264	SOX3_SOX2	ENST00000371554.1|HSP90AB1|ENSG00000096384.15|heat shock protein 90kDa alpha (cytosolic), class B member 1
hg19_v2_chr3_+_123813509_123813528	0.0417863	SOX3_SOX2	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr16_-_18887627_18887627	0.0417639	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr12_-_54673871_54673925	0.0417475	SOX3_SOX2	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr12_+_45686457_45686482	0.041736	SOX3_SOX2	ENST00000441606.2|ANO6|ENSG00000177119.11|anoctamin 6
hg19_v2_chr22_+_27053545_27053561	0.0416955	SOX3_SOX2	ENST00000458302.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000419237.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr10_-_27530997_27531065	0.0416105	SOX3_SOX2	ENST00000375901.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000412279.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000375905.4|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr13_-_36944307_36944322	0.0415204	SOX3_SOX2	ENST00000355182.4|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chrX_-_11284095_11284131	0.0414361	SOX3_SOX2	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr2_+_181845074_181845118	0.0414287	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr4_+_15480828_15480868	0.0412706	SOX3_SOX2	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr15_+_32322685_32322701	0.0412692	SOX3_SOX2	ENST00000454250.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal) 	ENST00000306901.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr1_-_173638976_173639007	0.0412362	SOX3_SOX2	ENST00000333279.2|ANKRD45|ENSG00000183831.6|ankyrin repeat domain 45
hg19_v2_chr19_+_57019212_57019250	0.0411993	SOX3_SOX2	ENST00000308031.5|ZNF471|ENSG00000196263.3|zinc finger protein 471 	ENST00000591537.1|ZNF471|ENSG00000196263.3|zinc finger protein 471
hg19_v2_chr19_+_21324827_21324855	0.0411191	SOX3_SOX2	ENST00000600692.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000599296.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000594425.1|ZNF431|ENSG00000196705.4|zinc finger protein 431 	ENST00000311048.7|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr4_+_95917383_95917421	0.0410739	SOX3_SOX2	ENST00000512312.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr11_-_18062335_18062335	0.0410503	SOX3_SOX2	ENST00000341556.2|TPH1|ENSG00000129167.5|tryptophan hydroxylase 1
hg19_v2_chr2_+_105050794_105050854	0.0409982	SOX3_SOX2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr16_+_20685815_20685930	0.040958	SOX3_SOX2	ENST00000561584.1|ACSM3|ENSG00000005187.7|acyl-CoA synthetase medium-chain family member 3
hg19_v2_chr4_+_184365744_184365797	0.0409122	SOX3_SOX2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr3_-_12200851_12200885	0.0408721	SOX3_SOX2	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr11_-_10829851_10829860	0.0407335	SOX3_SOX2	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr19_+_57791419_57791436	0.0406445	SOX3_SOX2	ENST00000537645.1|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr4_-_121993673_121993698	0.0404702	SOX3_SOX2	ENST00000379692.4|NDNF|ENSG00000173376.9|neuron-derived neurotrophic factor
hg19_v2_chr1_+_215256467_215256622	0.0403917	SOX3_SOX2	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr2_-_207024233_207024327	0.0402974	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr19_-_39264072_39264132	0.0402133	SOX3_SOX2	ENST00000599035.1|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7 	ENST00000378626.4|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7
hg19_v2_chr9_+_131902346_131902404	0.0401837	SOX3_SOX2	ENST00000432124.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000435305.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr6_-_146057144_146057164	0.0401731	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chr11_-_126081532_126081587	0.0400832	SOX3_SOX2	ENST00000533628.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000298317.4|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000532674.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4
hg19_v2_chr2_+_17721920_17721933	0.0400015	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr16_-_18911366_18911366	0.0399867	SOX3_SOX2	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr11_-_130184470_130184533	0.0399735	SOX3_SOX2	ENST00000357899.4|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44 	ENST00000397753.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr2_-_237150258_237150258	0.0399504	SOX3_SOX2	ENST00000330842.6|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18
hg19_v2_chr10_-_70092671_70092806	0.0399421	SOX3_SOX2	ENST00000358769.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000432941.1|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000495025.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr4_-_83483360_83483386	0.0399241	SOX3_SOX2	ENST00000449862.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr7_+_107301065_107301080	0.0397724	SOX3_SOX2	ENST00000265715.3|SLC26A4|ENSG00000091137.7|solute carrier family 26 (anion exchanger), member 4
hg19_v2_chrX_+_70443050_70443061	0.0397191	SOX3_SOX2	ENST00000361726.6|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr5_-_141338627_141338627	0.0396468	SOX3_SOX2	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr20_+_35202909_35203075	0.0395373	SOX3_SOX2	ENST00000558530.1|TGIF2-C20orf24|ENSG00000259399.1|TGIF2-C20orf24 readthrough 	ENST00000558028.1|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2 	ENST00000560025.1|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr4_+_126315091_126315091	0.0394867	SOX3_SOX2	ENST00000335110.5|FAT4|ENSG00000196159.7|FAT atypical cadherin 4
hg19_v2_chr4_-_52904425_52904471	0.0393359	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr11_+_64058758_64058797	0.0392249	SOX3_SOX2	ENST00000538767.1|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr17_+_29664830_29664844	0.0391793	SOX3_SOX2	ENST00000444181.2|NF1|ENSG00000196712.12|neurofibromin 1 	ENST00000417592.2|NF1|ENSG00000196712.12|neurofibromin 1
hg19_v2_chr3_+_151986709_151986892	0.0391587	SOX3_SOX2	ENST00000495875.2|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000493459.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324210.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000459747.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chrX_+_102631844_102632109	0.039151	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr13_-_103451307_103451380	0.0391104	SOX3_SOX2	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr12_-_117628253_117628308	0.0390719	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr13_+_51483814_51483935	0.0390561	SOX3_SOX2	ENST00000336617.3|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B 	ENST00000422660.1|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B
hg19_v2_chr7_+_104581389_104581653	0.0389709	SOX3_SOX2	ENST00000415513.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2	ENST00000417026.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2
hg19_v2_chr11_+_35198118_35198209	0.0389503	SOX3_SOX2	ENST00000525211.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526000.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000279452.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000527889.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr4_+_55524085_55524110	0.038878	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr13_-_99404875_99404942	0.0386887	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chr19_+_56159421_56159433	0.0386713	SOX3_SOX2	ENST00000587213.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106
hg19_v2_chr6_-_112194484_112194662	0.0384891	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr7_-_8302298_8302323	0.0384342	SOX3_SOX2	ENST00000446305.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr6_+_56911336_56911347	0.0383834	SOX3_SOX2	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr2_-_160568529_160568563	0.0382995	SOX3_SOX2	ENST00000418770.1|AC009961.3|ENSG00000226266.2|AC009961.3
hg19_v2_chr14_+_65182395_65182438	0.0382478	SOX3_SOX2	ENST00000554088.1|PLEKHG3|ENSG00000126822.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
hg19_v2_chr4_+_62067860_62067900	0.0382324	SOX3_SOX2	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr8_+_91803695_91803778	0.0380716	SOX3_SOX2	ENST00000417640.2|NECAB1|ENSG00000123119.7|N-terminal EF-hand calcium binding protein 1
hg19_v2_chr7_-_78400598_78400654	0.038045	SOX3_SOX2	ENST00000536571.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr16_+_2880296_2880310	0.0378357	SOX3_SOX2	ENST00000571723.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr3_-_11623804_11623865	0.0377789	SOX3_SOX2	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr17_+_31254892_31254955	0.0377481	SOX3_SOX2	ENST00000394642.3|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000579849.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr11_+_86511549_86511563	0.0377424	SOX3_SOX2	ENST00000533902.2|PRSS23|ENSG00000150687.7|protease, serine, 23
hg19_v2_chr13_+_28194873_28194954	0.0377099	SOX3_SOX2	ENST00000302979.3|POLR1D|ENSG00000186184.11|polymerase (RNA) I polypeptide D, 16kDa
hg19_v2_chr2_-_218843623_218843657	0.0376987	SOX3_SOX2	ENST00000413280.1|TNS1|ENSG00000079308.12|tensin 1
hg19_v2_chr1_-_23670752_23670803	0.0376286	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr3_+_159570722_159570733	0.0376108	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr15_+_79166065_79166163	0.0375997	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr11_-_82997371_82997416	0.0375884	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr19_-_20150014_20150085	0.0375549	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr2_+_70056762_70056847	0.0373885	SOX3_SOX2	ENST00000282570.3|GMCL1|ENSG00000087338.4|germ cell-less, spermatogenesis associated 1
hg19_v2_chr6_-_90062543_90062567	0.0373194	SOX3_SOX2	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr3_+_193311056_193311087	0.0372245	SOX3_SOX2	ENST00000419435.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr19_-_15442701_15442739	0.0372142	SOX3_SOX2	ENST00000594841.1|BRD4|ENSG00000141867.13|bromodomain containing 4 	ENST00000601941.1|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr7_-_111846435_111846471	0.0371269	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr10_-_14614095_14614112	0.0371213	SOX3_SOX2	ENST00000482277.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378462.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr4_-_174256276_174256303	0.0371069	SOX3_SOX2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr1_+_185014496_185014518	0.0370816	SOX3_SOX2	ENST00000367510.3|RNF2|ENSG00000121481.6|ring finger protein 2
hg19_v2_chr11_-_57417367_57417401	0.0370797	SOX3_SOX2	ENST00000534810.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr7_+_150690857_150690892	0.0369818	SOX3_SOX2	ENST00000484524.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell) 	ENST00000467517.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chrY_+_15016013_15016029	0.0368149	SOX3_SOX2	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr10_+_71444655_71444655	0.0368095	SOX3_SOX2	ENST00000434931.2|RP11-242G20.1|ENSG00000235645.2|Uncharacterized protein
hg19_v2_chr17_-_56406117_56406165	0.0367113	SOX3_SOX2	ENST00000268893.6|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1 	ENST00000355701.3|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1
hg19_v2_chr20_+_1184098_1184098	0.0366579	SOX3_SOX2	ENST00000400633.1|C20orf202|ENSG00000215595.1|chromosome 20 open reading frame 202
hg19_v2_chr1_-_115300579_115300590	0.0366456	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr20_+_62716348_62716369	0.0364331	SOX3_SOX2	ENST00000349451.3|OPRL1|ENSG00000125510.11|opiate receptor-like 1
hg19_v2_chr20_-_30458491_30458550	0.0364285	SOX3_SOX2	ENST00000339738.5|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr16_-_2837949_2837949	0.0363915	SOX3_SOX2	ENST00000570702.1|PRSS33|ENSG00000103355.8|protease, serine, 33
hg19_v2_chr2_-_100721923_100722045	0.0363801	SOX3_SOX2	ENST00000356421.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr15_-_81202118_81202118	0.0363292	SOX3_SOX2	ENST00000560560.1|RP11-351M8.1|ENSG00000259649.1|Uncharacterized protein
hg19_v2_chr7_-_135433534_135433594	0.0363009	SOX3_SOX2	ENST00000338588.3|FAM180A|ENSG00000189320.4|family with sequence similarity 180, member A
hg19_v2_chr3_-_69370095_69370115	0.0362173	SOX3_SOX2	ENST00000473029.1|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr9_+_80912059_80912081	0.0361231	SOX3_SOX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr8_-_66546373_66546428	0.0360389	SOX3_SOX2	ENST00000518908.1|ARMC1|ENSG00000104442.5|armadillo repeat containing 1 	ENST00000458464.2|ARMC1|ENSG00000104442.5|armadillo repeat containing 1 	ENST00000519352.1|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr3_-_49459878_49459912	0.0360191	SOX3_SOX2	ENST00000546031.1|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000458307.2|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000430521.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr15_+_76196234_76196466	0.03596	SOX3_SOX2	ENST00000540507.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000565036.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000569054.1|FBXO22|ENSG00000167196.9|F-box protein 22
hg19_v2_chr7_+_29186174_29186188	0.0359384	SOX3_SOX2	ENST00000439384.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr15_+_22368478_22368478	0.0359217	SOX3_SOX2	ENST00000332663.2|OR4M2|ENSG00000182974.2|olfactory receptor, family 4, subfamily M, member 2
hg19_v2_chr9_-_126030817_126030906	0.0359215	SOX3_SOX2	ENST00000348403.5|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000447404.2|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000360998.3|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein
hg19_v2_chr2_+_102953608_102953727	0.0358644	SOX3_SOX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr1_-_68698197_68698214	0.0357999	SOX3_SOX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr11_-_123525648_123525714	0.0357897	SOX3_SOX2	ENST00000527836.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr12_+_9142131_9142229	0.0357876	SOX3_SOX2	ENST00000356986.3|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1 	ENST00000266551.4|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr10_-_75410771_75410813	0.0357701	SOX3_SOX2	ENST00000372873.4|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr6_+_12749657_12749699	0.03573	SOX3_SOX2	ENST00000406205.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr14_+_24521202_24521267	0.0357111	SOX3_SOX2	ENST00000334420.7|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B 	ENST00000342740.5|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B
hg19_v2_chr17_-_56605341_56605363	0.0356717	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr1_-_17445930_17445954	0.0356586	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chrX_+_101470280_101470280	0.0355391	SOX3_SOX2	ENST00000395088.2|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000330252.5|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000333110.5|TCP11X1|ENSG00000215046.4|t-complex 11 family, X-linked 1
hg19_v2_chr19_-_23941639_23941672	0.0354687	SOX3_SOX2	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr7_+_87563557_87563735	0.0354679	SOX3_SOX2	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr4_-_85887503_85887544	0.0354246	SOX3_SOX2	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr3_-_27763803_27763822	0.0354077	SOX3_SOX2	ENST00000449599.1|EOMES|ENSG00000163508.8|eomesodermin
hg19_v2_chr16_+_28303804_28303864	0.0353087	SOX3_SOX2	ENST00000341901.4|SBK1|ENSG00000188322.4|SH3 domain binding kinase 1
hg19_v2_chr6_+_144606817_144606837	0.035098	SOX3_SOX2	ENST00000433557.1|UTRN|ENSG00000152818.14|utrophin
hg19_v2_chr19_-_42498231_42498356	0.0350317	SOX3_SOX2	ENST00000602133.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr3_-_124839648_124839709	0.034867	SOX3_SOX2	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr6_-_108582168_108582256	0.0348588	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chr3_+_49977440_49977482	0.0347923	SOX3_SOX2	ENST00000442092.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000266022.4|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000443081.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr2_-_48132814_48132917	0.0347855	SOX3_SOX2	ENST00000316377.4|FBXO11|ENSG00000138081.15|F-box protein 11 	ENST00000378314.3|FBXO11|ENSG00000138081.15|F-box protein 11
hg19_v2_chr17_+_43972010_43972040	0.0347423	SOX3_SOX2	ENST00000334239.8|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000446361.3|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr4_-_24586140_24586188	0.0347085	SOX3_SOX2	ENST00000336812.4|DHX15|ENSG00000109606.8|DEAH (Asp-Glu-Ala-His) box helicase 15
hg19_v2_chr10_-_62704005_62704045	0.0346888	SOX3_SOX2	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chrX_+_38420783_38420805	0.0346852	SOX3_SOX2	ENST00000422612.2|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000286824.6|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000545599.1|TSPAN7|ENSG00000156298.8|tetraspanin 7
hg19_v2_chr16_+_67062996_67063019	0.034677	SOX3_SOX2	ENST00000561924.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr1_+_201708992_201709011	0.0346756	SOX3_SOX2	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr15_-_74421477_74421619	0.0346412	SOX3_SOX2	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr19_+_15052301_15052301	0.0345558	SOX3_SOX2	ENST00000248072.3|OR7C2|ENSG00000127529.7|olfactory receptor, family 7, subfamily C, member 2
hg19_v2_chrX_+_153030941_153030984	0.0344288	SOX3_SOX2	ENST00000538282.1|PLXNB3|ENSG00000198753.7|plexin B3
hg19_v2_chr7_+_18535346_18535399	0.0344247	SOX3_SOX2	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr22_+_19419425_19419425	0.0344186	SOX3_SOX2	ENST00000333130.3|MRPL40|ENSG00000185608.4|mitochondrial ribosomal protein L40
hg19_v2_chrX_-_140336629_140336655	0.0343295	SOX3_SOX2	ENST00000358993.2|SPANXC|ENSG00000198573.6|SPANX family, member C
hg19_v2_chr11_+_125496400_125496464	0.0343291	SOX3_SOX2	ENST00000524737.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr4_-_53522703_53522757	0.0342801	SOX3_SOX2	ENST00000508499.1|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr11_-_111781610_111781617	0.0342686	SOX3_SOX2	ENST00000525823.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr9_+_136325089_136325144	0.034252	SOX3_SOX2	ENST00000291722.7|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000316948.4|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1 	ENST00000540581.1|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1
hg19_v2_chr14_-_73925225_73925323	0.0342303	SOX3_SOX2	ENST00000356296.4|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000355058.3|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000359560.3|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000557597.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000554394.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555238.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000535282.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555987.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555394.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000554546.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila)
hg19_v2_chr12_+_101188547_101188585	0.0342002	SOX3_SOX2	ENST00000546991.1|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392979.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr3_+_44596679_44596726	0.0341413	SOX3_SOX2	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr13_-_36920872_36920934	0.0341312	SOX3_SOX2	ENST00000451493.1|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr16_+_812506_812524	0.0340839	SOX3_SOX2	ENST00000569566.1|MSLN|ENSG00000102854.10|mesothelin
hg19_v2_chr1_+_12834984_12834984	0.0340633	SOX3_SOX2	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr22_-_41864662_41864729	0.0339376	SOX3_SOX2	ENST00000216252.3|PHF5A|ENSG00000100410.3|PHD finger protein 5A
hg19_v2_chr8_+_98656336_98656535	0.033937	SOX3_SOX2	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr13_-_31040060_31040102	0.0339051	SOX3_SOX2	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr1_-_231004220_231004399	0.0338826	SOX3_SOX2	ENST00000366663.5|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr10_-_97175444_97175481	0.0338064	SOX3_SOX2	ENST00000486141.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr7_+_102553430_102553456	0.033769	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr2_+_89901292_89901292	0.0336748	SOX3_SOX2	ENST00000448155.2|IGKV1D-39|ENSG00000251546.1|immunoglobulin kappa variable 1D-39
hg19_v2_chr12_-_117628333_117628339	0.0335285	SOX3_SOX2	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr21_-_43299404_43299591	0.0335194	SOX3_SOX2	ENST00000422911.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000398548.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000538201.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000269844.3|PRDM15|ENSG00000141956.9|PR domain containing 15
hg19_v2_chr7_+_29186192_29186222	0.0333312	SOX3_SOX2	ENST00000539406.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr10_+_18689637_18689742	0.033128	SOX3_SOX2	ENST00000377315.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr15_-_44487408_44487476	0.0330404	SOX3_SOX2	ENST00000402883.1|FRMD5|ENSG00000171877.15|FERM domain containing 5 	ENST00000417257.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr5_-_111093167_111093252	0.0325892	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr4_-_144940477_144940541	0.0324741	SOX3_SOX2	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr13_+_76210448_76210494	0.0324714	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr10_-_123734683_123734738	0.0324204	SOX3_SOX2	ENST00000369017.5|NSMCE4A|ENSG00000107672.10|non-SMC element 4 homolog A (S. cerevisiae) 	ENST00000369023.3|NSMCE4A|ENSG00000107672.10|non-SMC element 4 homolog A (S. cerevisiae)
hg19_v2_chr14_-_21562671_21562702	0.0323519	SOX3_SOX2	ENST00000554923.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr6_+_41040678_41040722	0.0323232	SOX3_SOX2	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr1_+_151682909_151682909	0.0322847	SOX3_SOX2	ENST00000326413.3|RIIAD1|ENSG00000178796.8|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 	ENST00000442233.2|AL589765.1|ENSG00000240510.2|Uncharacterized protein; cDNA FLJ36032 fis, clone TESTI2017069
hg19_v2_chr3_-_160283348_160283376	0.0322163	SOX3_SOX2	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr20_+_60698180_60698208	0.0321879	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr2_+_10183651_10183713	0.0321765	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chrX_+_9880590_9880723	0.0321613	SOX3_SOX2	ENST00000452575.1|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chrX_-_72097698_72097698	0.0321564	SOX3_SOX2	ENST00000373530.1|DMRTC1|ENSG00000159123.10|DMRT-like family C1
hg19_v2_chr13_-_49975632_49975735	0.0321462	SOX3_SOX2	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr19_+_11466167_11466180	0.0321001	SOX3_SOX2	ENST00000591608.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr15_-_35088340_35088340	0.0320657	SOX3_SOX2	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chrX_+_71401526_71401549	0.0320477	SOX3_SOX2	ENST00000218432.5|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000423432.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000373669.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr4_+_114214125_114214151	0.0320348	SOX3_SOX2	ENST00000509550.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr18_-_78005231_78005435	0.0319861	SOX3_SOX2	ENST00000470488.2|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma 	ENST00000353265.3|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma
hg19_v2_chr4_-_25865159_25865382	0.0319173	SOX3_SOX2	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chrX_+_135229600_135229624	0.0319009	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr14_-_23284703_23284732	0.0318947	SOX3_SOX2	ENST00000555911.1|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr5_-_168006324_168006400	0.0318893	SOX3_SOX2	ENST00000522176.1|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr10_-_25012115_25012174	0.0318143	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr3_-_116163830_116163855	0.03173	SOX3_SOX2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr6_-_29527702_29527702	0.031602	SOX3_SOX2	ENST00000377050.4|UBD|ENSG00000213886.3|ubiquitin D
hg19_v2_chr6_+_36410762_36410858	0.031546	SOX3_SOX2	ENST00000483557.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000498267.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000544295.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000449081.2|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000536244.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000460983.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20
hg19_v2_chr14_-_23285011_23285039	0.0315214	SOX3_SOX2	ENST00000397532.3|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr17_-_17184546_17184569	0.0313746	SOX3_SOX2	ENST00000417352.1|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr1_+_104198377_104198377	0.031326	SOX3_SOX2	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr4_-_74088800_74088844	0.0312682	SOX3_SOX2	ENST00000509867.2|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr13_+_103451548_103451561	0.0312527	SOX3_SOX2	ENST00000419638.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr12_-_93836028_93836039	0.0312124	SOX3_SOX2	ENST00000318066.2|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr11_-_3400330_3400422	0.0311386	SOX3_SOX2	ENST00000427810.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000005082.9|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000534569.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000438262.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528796.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528410.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000529678.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000354599.6|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000526601.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000525502.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000533036.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000399602.4|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr14_-_104028595_104028677	0.0310644	SOX3_SOX2	ENST00000337322.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000445922.2|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr1_-_247267580_247267674	0.0310105	SOX3_SOX2	ENST00000366501.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000366500.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000476158.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000448299.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000358785.4|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000343381.6|ZNF669|ENSG00000188295.10|zinc finger protein 669
hg19_v2_chr3_-_169530574_169530774	0.0309088	SOX3_SOX2	ENST00000316515.7|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522830.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522526.2|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr5_+_125758865_125758876	0.0308892	SOX3_SOX2	ENST00000542322.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000544396.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr20_+_58179582_58179603	0.0308685	SOX3_SOX2	ENST00000371015.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3 	ENST00000395639.4|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr7_-_23571586_23571660	0.0308613	SOX3_SOX2	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chr6_-_46459099_46459132	0.030798	SOX3_SOX2	ENST00000371374.1|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr4_-_109089573_109089585	0.0307816	SOX3_SOX2	ENST00000265165.1|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr4_-_77996032_77996068	0.0307488	SOX3_SOX2	ENST00000505609.1|CCNI|ENSG00000118816.5|cyclin I
hg19_v2_chr13_+_113656022_113656041	0.0307281	SOX3_SOX2	ENST00000423482.2|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr2_+_207024306_207024392	0.0306884	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr14_-_50999190_50999225	0.0306732	SOX3_SOX2	ENST00000557390.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr19_+_17416609_17416716	0.0305922	SOX3_SOX2	ENST00000602206.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chrX_-_101726732_101726732	0.0305406	SOX3_SOX2	ENST00000457521.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000412230.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000453326.2|TCP11X2|ENSG00000215029.4|t-complex 11 family, X-linked 2
hg19_v2_chr7_+_105603699_105603732	0.0305109	SOX3_SOX2	ENST00000478080.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr17_-_79359046_79359058	0.0304461	SOX3_SOX2	ENST00000574041.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr2_+_208576355_208576475	0.0304321	SOX3_SOX2	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr14_-_68000442_68000456	0.0303974	SOX3_SOX2	ENST00000554278.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr19_-_5293243_5293282	0.0303542	SOX3_SOX2	ENST00000591760.1|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr2_-_216257849_216257907	0.0302178	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr8_-_29939933_29939949	0.0300941	SOX3_SOX2	ENST00000522794.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr5_-_124080203_124080258	0.0300399	SOX3_SOX2	ENST00000504926.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr6_-_167040693_167040725	0.0298689	SOX3_SOX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_-_110283660_110283660	0.0297421	SOX3_SOX2	ENST00000361066.2|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr14_+_75746664_75746683	0.0296781	SOX3_SOX2	ENST00000557139.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr7_+_129015484_129015519	0.0295506	SOX3_SOX2	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr10_+_102106829_102106881	0.0295291	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr1_-_53019059_53019176	0.0292949	SOX3_SOX2	ENST00000484723.2|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000524582.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr8_+_82644669_82644738	0.0292929	SOX3_SOX2	ENST00000297265.4|CHMP4C|ENSG00000164695.4|charged multivesicular body protein 4C
hg19_v2_chr19_-_57967854_57967854	0.0292483	SOX3_SOX2	ENST00000321039.3|VN1R1|ENSG00000178201.3|vomeronasal 1 receptor 1
hg19_v2_chr19_+_45409011_45409069	0.0291474	SOX3_SOX2	ENST00000252486.4|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000446996.1|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000434152.1|APOE|ENSG00000130203.5|apolipoprotein E
hg19_v2_chr11_-_10562710_10562782	0.0289617	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr8_-_41754231_41754281	0.0289389	SOX3_SOX2	ENST00000265709.8|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr9_-_86595105_86595184	0.0289132	SOX3_SOX2	ENST00000457156.1|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000360384.5|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376263.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr12_-_95009837_95009854	0.0289021	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr5_-_90610200_90610226	0.0288848	SOX3_SOX2	ENST00000511918.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000513626.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000607854.1|RP11-213H15.4|ENSG00000271762.1|RP11-213H15.4
hg19_v2_chr2_+_220309379_220309413	0.0288438	SOX3_SOX2	ENST00000451076.1|SPEG|ENSG00000072195.10|SPEG complex locus
hg19_v2_chr7_-_37382683_37382783	0.0287635	SOX3_SOX2	ENST00000455879.1|ELMO1|ENSG00000155849.11|engulfment and cell motility 1
hg19_v2_chr2_-_136594740_136594760	0.0287599	SOX3_SOX2	ENST00000264162.2|LCT|ENSG00000115850.5|lactase
hg19_v2_chr17_-_30668887_30668971	0.0287552	SOX3_SOX2	ENST00000581747.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000583334.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000580558.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr1_+_145727681_145727725	0.0287101	SOX3_SOX2	ENST00000417171.1|PDZK1|ENSG00000174827.9|PDZ domain containing 1 	ENST00000451928.2|PDZK1|ENSG00000174827.9|PDZ domain containing 1
hg19_v2_chr3_-_139258521_139258671	0.0286743	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr12_-_49453557_49453557	0.0286348	SOX3_SOX2	ENST00000547610.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr3_+_189349162_189349305	0.0285889	SOX3_SOX2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr4_-_109090106_109090124	0.0285264	SOX3_SOX2	ENST00000379951.2|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chrX_-_151619746_151619830	0.0284711	SOX3_SOX2	ENST00000370314.4|GABRA3|ENSG00000011677.8|gamma-aminobutyric acid (GABA) A receptor, alpha 3
hg19_v2_chr18_-_7117813_7117843	0.0284575	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr2_+_33172012_33172039	0.0284228	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr17_-_15469590_15469590	0.0283928	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr12_+_31477250_31477250	0.028368	SOX3_SOX2	ENST00000313737.4|AC024940.1|ENSG00000177340.4|AC024940.1
hg19_v2_chr3_-_120170052_120170100	0.0283473	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr15_+_50474385_50474404	0.0281856	SOX3_SOX2	ENST00000267842.5|SLC27A2|ENSG00000140284.6|solute carrier family 27 (fatty acid transporter), member 2
hg19_v2_chr11_-_18548426_18548500	0.0281793	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr14_-_57960545_57960595	0.0281653	SOX3_SOX2	ENST00000526336.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000216445.3|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr1_+_154193643_154193804	0.0280459	SOX3_SOX2	ENST00000456325.1|UBAP2L|ENSG00000143569.14|ubiquitin associated protein 2-like
hg19_v2_chr5_-_157079428_157079452	0.0280104	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr17_+_21729593_21729605	0.0279718	SOX3_SOX2	ENST00000581769.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4 	ENST00000584755.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr4_+_86699834_86699889	0.0279356	SOX3_SOX2	ENST00000395183.2|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr12_+_133707204_133707236	0.0278962	SOX3_SOX2	ENST00000426665.2|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr4_+_26165074_26165110	0.0278808	SOX3_SOX2	ENST00000512351.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr4_+_76649753_76649777	0.0278428	SOX3_SOX2	ENST00000603759.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr10_-_97321165_97321176	0.0277184	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr1_+_235492300_235492344	0.0276009	SOX3_SOX2	ENST00000476121.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000497327.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr11_+_34643600_34643750	0.0275906	SOX3_SOX2	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr6_-_132834184_132834337	0.0275567	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr2_-_86422523_86422595	0.0275266	SOX3_SOX2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr6_+_89790490_89790506	0.0275174	SOX3_SOX2	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr8_+_126442563_126442624	0.0275116	SOX3_SOX2	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr17_-_79358929_79358954	0.0274802	SOX3_SOX2	ENST00000570301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr15_-_65398647_65398697	0.0274471	SOX3_SOX2	ENST00000502113.2|UBAP1L|ENSG00000246922.4|ubiquitin associated protein 1-like
hg19_v2_chr4_+_41983713_41983798	0.0274308	SOX3_SOX2	ENST00000333141.5|DCAF4L1|ENSG00000182308.5|DDB1 and CUL4 associated factor 4-like 1
hg19_v2_chr16_-_70239683_70239683	0.0274017	SOX3_SOX2	ENST00000601706.1|AC009060.1|ENSG00000269746.1|Uncharacterized protein
hg19_v2_chr1_-_31381528_31381659	0.0273865	SOX3_SOX2	ENST00000339394.6|SDC3|ENSG00000162512.11|syndecan 3
hg19_v2_chr4_+_113568207_113568367	0.0273424	SOX3_SOX2	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr5_+_139175380_139175431	0.0273156	SOX3_SOX2	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr16_+_27078219_27078229	0.0270671	SOX3_SOX2	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr16_+_3162557_3162796	0.0270568	SOX3_SOX2	ENST00000382192.3|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000219091.4|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000444510.2|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000414351.1|ZNF205|ENSG00000122386.6|zinc finger protein 205
hg19_v2_chr6_+_21666633_21666681	0.0270543	SOX3_SOX2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr10_+_115511434_115511454	0.0268831	SOX3_SOX2	ENST00000369312.4|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr9_-_127269661_127269719	0.026797	SOX3_SOX2	ENST00000373588.4|NR5A1|ENSG00000136931.5|nuclear receptor subfamily 5, group A, member 1
hg19_v2_chr9_-_115818951_115819011	0.0267821	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr10_+_115999004_115999019	0.0267608	SOX3_SOX2	ENST00000603594.1|VWA2|ENSG00000165816.8|von Willebrand factor A domain containing 2
hg19_v2_chr6_-_86352642_86352709	0.0267402	SOX3_SOX2	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chrX_+_147582228_147582320	0.0266942	SOX3_SOX2	ENST00000342251.3|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr15_+_41136263_41136291	0.0265641	SOX3_SOX2	ENST00000568823.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr17_+_44803922_44803922	0.0265022	SOX3_SOX2	ENST00000465370.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr14_+_85996507_85996572	0.0264935	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chrX_-_2847366_2847394	0.0263806	SOX3_SOX2	ENST00000381154.1|ARSD|ENSG00000006756.11|arylsulfatase D
hg19_v2_chr20_-_1165319_1165319	0.026366	SOX3_SOX2	ENST00000429036.1|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr3_-_49466686_49466764	0.0263377	SOX3_SOX2	ENST00000273598.3|NICN1|ENSG00000145029.7|nicolin 1 	ENST00000436744.2|NICN1|ENSG00000145029.7|nicolin 1
hg19_v2_chr13_-_39612176_39612258	0.0262604	SOX3_SOX2	ENST00000352251.3|PROSER1|ENSG00000120685.15|proline and serine rich 1 	ENST00000350125.3|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr5_+_113769205_113769227	0.0262362	SOX3_SOX2	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr6_+_10556215_10556240	0.0259381	SOX3_SOX2	ENST00000316170.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr11_+_125496124_125496344	0.0259299	SOX3_SOX2	ENST00000533778.2|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000534070.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr21_+_47268058_47268079	0.025909	SOX3_SOX2	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr3_-_128207349_128207386	0.0258753	SOX3_SOX2	ENST00000487848.1|GATA2|ENSG00000179348.7|GATA binding protein 2
hg19_v2_chr1_-_95392635_95392834	0.0257114	SOX3_SOX2	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr4_-_83350580_83350600	0.0257085	SOX3_SOX2	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr3_-_129407535_129407575	0.0256328	SOX3_SOX2	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr1_-_89357179_89357301	0.0255889	SOX3_SOX2	ENST00000448623.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000418217.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000370500.5|GTF2B|ENSG00000137947.7|general transcription factor IIB
hg19_v2_chr3_-_79068138_79068214	0.0254308	SOX3_SOX2	ENST00000495273.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr1_-_167883353_167883453	0.0253886	SOX3_SOX2	ENST00000545172.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr10_-_127371675_127371716	0.02535	SOX3_SOX2	ENST00000532135.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000526819.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000368821.3|TEX36|ENSG00000175018.8|testis expressed 36
hg19_v2_chr17_+_55334364_55334412	0.0253293	SOX3_SOX2	ENST00000322684.3|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2 	ENST00000579590.1|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr19_-_55691614_55691809	0.0253077	SOX3_SOX2	ENST00000592470.1|SYT5|ENSG00000129990.10|synaptotagmin V 	ENST00000354308.3|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr10_+_22605304_22605372	0.0252477	SOX3_SOX2	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr1_+_54411715_54411760	0.0251578	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr1_-_11024258_11024258	0.0251465	SOX3_SOX2	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr7_+_87563458_87563489	0.0251385	SOX3_SOX2	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr9_+_112403059_112403079	0.0250624	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr4_-_83483395_83483510	0.0250407	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr1_-_9970383_9970421	0.0249868	SOX3_SOX2	ENST00000400904.3|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr9_-_140196703_140196744	0.0249442	SOX3_SOX2	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr18_+_11851383_11851399	0.0249285	SOX3_SOX2	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr1_+_39571026_39571117	0.0249005	SOX3_SOX2	ENST00000524432.1|MACF1|ENSG00000127603.19|microtubule-actin crosslinking factor 1
hg19_v2_chr5_+_180326077_180326136	0.0248955	SOX3_SOX2	ENST00000231229.4|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000340184.4|BTNL8|ENSG00000113303.7|butyrophilin-like 8 	ENST00000400707.3|BTNL8|ENSG00000113303.7|butyrophilin-like 8
hg19_v2_chr16_+_30406423_30406447	0.0248759	SOX3_SOX2	ENST00000524644.1|ZNF48|ENSG00000180035.6|zinc finger protein 48
hg19_v2_chr11_+_44117741_44117798	0.0248741	SOX3_SOX2	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr12_-_104359475_104359513	0.0248195	SOX3_SOX2	ENST00000553183.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr3_+_134514093_134514169	0.0247795	SOX3_SOX2	ENST00000398015.3|EPHB1|ENSG00000154928.12|EPH receptor B1
hg19_v2_chr2_+_192109911_192110170	0.0247707	SOX3_SOX2	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr9_-_92051354_92051386	0.0247445	SOX3_SOX2	ENST00000418828.1|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chrX_+_72062617_72062617	0.0247195	SOX3_SOX2	ENST00000440247.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr17_+_27717415_27717618	0.0247132	SOX3_SOX2	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr6_-_2972075_2972090	0.02466	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr11_+_64059464_64059482	0.0246429	SOX3_SOX2	ENST00000394525.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr5_+_140557371_140557371	0.024609	SOX3_SOX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr14_+_91591873_91591888	0.024596	SOX3_SOX2	ENST00000521064.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr19_-_17375541_17375605	0.024558	SOX3_SOX2	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr7_-_8302164_8302196	0.0244228	SOX3_SOX2	ENST00000447326.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa 	ENST00000406470.2|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chrX_-_140786896_140786896	0.0244029	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr19_+_21264980_21265026	0.0243904	SOX3_SOX2	ENST00000596053.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000597086.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000596143.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000596367.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000601416.1|ZNF714|ENSG00000160352.11|zinc finger protein 714
hg19_v2_chr2_+_177025619_177025619	0.0243192	SOX3_SOX2	ENST00000410016.1|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr19_-_20150252_20150298	0.024245	SOX3_SOX2	ENST00000595736.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000593468.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000596019.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr14_-_35182994_35183034	0.024161	SOX3_SOX2	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr11_+_46402482_46402502	0.0241419	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_+_100818009_100818072	0.0240211	SOX3_SOX2	ENST00000370125.2|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000361544.6|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000370124.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr2_+_111880242_111880289	0.0240156	SOX3_SOX2	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr2_+_69240302_69240332	0.0239755	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr13_-_74708372_74708409	0.0239608	SOX3_SOX2	ENST00000377666.4|KLF12|ENSG00000118922.12|Kruppel-like factor 12
hg19_v2_chr15_-_72766533_72766572	0.0238493	SOX3_SOX2	ENST00000562573.1|RP11-1007O24.3|ENSG00000261423.1|RP11-1007O24.3
hg19_v2_chr1_+_1361494_1361508	0.0238025	SOX3_SOX2	ENST00000378821.3|TMEM88B|ENSG00000205116.3|transmembrane protein 88B
hg19_v2_chr7_+_5938351_5938379	0.0237979	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr13_+_34392185_34392191	0.0237909	SOX3_SOX2	ENST00000380071.3|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr5_-_111092930_111092955	0.0237418	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr12_-_11036844_11036861	0.0236617	SOX3_SOX2	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chr12_-_99548524_99548550	0.0236337	SOX3_SOX2	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chrX_+_103294483_103294530	0.0234987	SOX3_SOX2	ENST00000355016.3|H2BFM|ENSG00000101812.8|H2B histone family, member M
hg19_v2_chr4_-_76649546_76649709	0.0233377	SOX3_SOX2	ENST00000508510.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000509561.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000499709.2|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000511868.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr1_+_182808474_182808504	0.0232865	SOX3_SOX2	ENST00000367549.3|DHX9|ENSG00000135829.12|DEAH (Asp-Glu-Ala-His) box helicase 9
hg19_v2_chr1_+_169079823_169079836	0.0232787	SOX3_SOX2	ENST00000367813.3|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr8_+_144718171_144718332	0.0232078	SOX3_SOX2	ENST00000526926.1|ZNF623|ENSG00000183309.7|zinc finger protein 623 	ENST00000458270.2|ZNF623|ENSG00000183309.7|zinc finger protein 623
hg19_v2_chr11_+_114128522_114128553	0.0231979	SOX3_SOX2	ENST00000535401.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr14_-_22005018_22005040	0.0231886	SOX3_SOX2	ENST00000546363.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr12_+_19358228_19358259	0.0231142	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr17_+_25621102_25621157	0.0230922	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr2_+_202098166_202098202	0.0230843	SOX3_SOX2	ENST00000392263.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264274.9|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392259.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392266.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000432109.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264275.5|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chrX_+_69509927_69509970	0.023059	SOX3_SOX2	ENST00000374403.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr14_+_75746781_75746896	0.0229472	SOX3_SOX2	ENST00000555347.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr3_-_123339343_123339401	0.0228675	SOX3_SOX2	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr18_-_64271363_64271390	0.0228512	SOX3_SOX2	ENST00000262150.2|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr8_-_38386175_38386180	0.0227413	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr1_-_145715565_145715614	0.0227356	SOX3_SOX2	ENST00000369288.2|CD160|ENSG00000117281.11|CD160 molecule 	ENST00000369290.1|CD160|ENSG00000117281.11|CD160 molecule 	ENST00000401557.3|CD160|ENSG00000117281.11|CD160 molecule
hg19_v2_chr4_-_143227088_143227105	0.0226528	SOX3_SOX2	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr5_+_125758813_125758845	0.0225658	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr18_+_18822216_18822319	0.0225596	SOX3_SOX2	ENST00000269218.6|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr3_-_88108212_88108223	0.0223905	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr8_+_21777159_21777221	0.0223769	SOX3_SOX2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chrX_+_16737718_16737778	0.0223118	SOX3_SOX2	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr1_-_235292250_235292261	0.0222066	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr1_+_226250379_226250427	0.0221932	SOX3_SOX2	ENST00000366815.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A 	ENST00000366814.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A
hg19_v2_chr2_+_157330081_157330104	0.0221634	SOX3_SOX2	ENST00000409674.1|GPD2|ENSG00000115159.11|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
hg19_v2_chr9_+_36036430_36036430	0.022148	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr19_-_1568057_1568142	0.0220785	SOX3_SOX2	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr10_-_69991865_69991871	0.0220257	SOX3_SOX2	ENST00000373673.3|ATOH7|ENSG00000179774.7|atonal homolog 7 (Drosophila)
hg19_v2_chr4_-_80993717_80993850	0.0219776	SOX3_SOX2	ENST00000307333.7|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr3_+_189507432_189507459	0.0219764	SOX3_SOX2	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr10_+_45455207_45455279	0.021976	SOX3_SOX2	ENST00000334940.6|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000374417.2|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000340258.5|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4 	ENST00000427758.1|RASSF4|ENSG00000107551.16|Ras association (RalGDS/AF-6) domain family member 4
hg19_v2_chr11_+_34654011_34654118	0.0219148	SOX3_SOX2	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr17_-_73775839_73775868	0.0218974	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr5_-_157079372_157079395	0.021679	SOX3_SOX2	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr2_-_175869936_175869954	0.0216632	SOX3_SOX2	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chrX_-_73512358_73512402	0.0216546	SOX3_SOX2	ENST00000602776.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr12_-_25055177_25055258	0.0216038	SOX3_SOX2	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr15_+_69857515_69857531	0.0215831	SOX3_SOX2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr11_+_46402744_46402777	0.0214115	SOX3_SOX2	ENST00000533952.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr9_+_140032842_140032842	0.0213049	SOX3_SOX2	ENST00000371561.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1 	ENST00000315048.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1
hg19_v2_chr2_-_64881018_64881064	0.0211221	SOX3_SOX2	ENST00000313349.3|SERTAD2|ENSG00000179833.4|SERTA domain containing 2
hg19_v2_chr20_+_55205825_55205938	0.0210986	SOX3_SOX2	ENST00000544508.1|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr10_+_94451574_94451612	0.0210437	SOX3_SOX2	ENST00000492654.2|HHEX|ENSG00000152804.6|hematopoietically expressed homeobox
hg19_v2_chr12_-_118498958_118499021	0.020972	SOX3_SOX2	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr1_-_41487415_41487426	0.0208045	SOX3_SOX2	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr9_-_132586378_132586433	0.02065	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr2_+_177028805_177028805	0.020554	SOX3_SOX2	ENST00000249440.3|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr17_+_33914424_33914455	0.0205156	SOX3_SOX2	ENST00000590432.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr11_-_89224299_89224466	0.0204727	SOX3_SOX2	ENST00000343727.5|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000531342.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000375979.3|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr11_-_1016149_1016156	0.0204043	SOX3_SOX2	ENST00000532016.1|MUC6|ENSG00000184956.11|mucin 6, oligomeric mucus/gel-forming
hg19_v2_chr3_-_112564797_112564797	0.0200855	SOX3_SOX2	ENST00000398214.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like 	ENST00000448932.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like
hg19_v2_chr9_-_36400857_36400902	0.0200143	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr11_-_111649074_111649123	0.0200103	SOX3_SOX2	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr3_+_169629354_169629372	0.0200089	SOX3_SOX2	ENST00000428432.2|SAMD7|ENSG00000187033.5|sterile alpha motif domain containing 7 	ENST00000335556.3|SAMD7|ENSG00000187033.5|sterile alpha motif domain containing 7
hg19_v2_chr3_-_19988462_19988501	0.0199935	SOX3_SOX2	ENST00000344838.4|EFHB|ENSG00000163576.13|EF-hand domain family, member B
hg19_v2_chr9_-_139658965_139658975	0.0199026	SOX3_SOX2	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chr17_+_72581057_72581057	0.0198591	SOX3_SOX2	ENST00000392620.1|C17orf77|ENSG00000182352.4|chromosome 17 open reading frame 77
hg19_v2_chr19_-_20150301_20150321	0.0198319	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr9_-_74979420_74979580	0.0197733	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr6_-_43478239_43478424	0.019672	SOX3_SOX2	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr11_+_12695944_12695989	0.0196657	SOX3_SOX2	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr15_+_38544476_38544574	0.0196657	SOX3_SOX2	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chrX_+_72062802_72062802	0.0196446	SOX3_SOX2	ENST00000373533.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr19_+_11649532_11649674	0.0196286	SOX3_SOX2	ENST00000252456.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000592923.1|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000535659.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle
hg19_v2_chr17_+_75542997_75543029	0.019508	SOX3_SOX2	ENST00000592651.1|RP11-13K12.1|ENSG00000267506.1|RP11-13K12.1	ENST00000590398.1|RP11-13K12.1|ENSG00000267506.1|RP11-13K12.1
hg19_v2_chr18_+_56531584_56531646	0.0194879	SOX3_SOX2	ENST00000590287.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr16_+_57653596_57653610	0.0194719	SOX3_SOX2	ENST00000568791.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000570044.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr1_+_28696111_28696130	0.0194564	SOX3_SOX2	ENST00000373839.3|PHACTR4|ENSG00000204138.8|phosphatase and actin regulator 4
hg19_v2_chr19_+_58341656_58341694	0.0194355	SOX3_SOX2	ENST00000442832.4|ZNF587B|ENSG00000269343.2|zinc finger protein 587B 	ENST00000594901.1|ZNF587B|ENSG00000269343.2|zinc finger protein 587B
hg19_v2_chr7_+_11013491_11013553	0.0194072	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr3_+_111260980_111261016	0.0193468	SOX3_SOX2	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr4_-_187647773_187647876	0.019276	SOX3_SOX2	ENST00000509647.1|FAT1|ENSG00000083857.9|FAT atypical cadherin 1
hg19_v2_chr15_-_40331115_40331251	0.0191527	SOX3_SOX2	ENST00000558720.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr4_+_699610_699732	0.018955	SOX3_SOX2	ENST00000521023.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr7_+_115850547_115850626	0.0188978	SOX3_SOX2	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr10_-_13544945_13544976	0.0188745	SOX3_SOX2	ENST00000378605.3|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000341083.3|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr7_+_105603738_105603753	0.01884	SOX3_SOX2	ENST00000541203.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr8_+_95653302_95653364	0.018782	SOX3_SOX2	ENST00000423620.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1 	ENST00000433389.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr2_+_8822113_8822196	0.0186566	SOX3_SOX2	ENST00000396290.1|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 	ENST00000331129.3|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
hg19_v2_chr17_+_40985407_40985513	0.0186378	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr5_-_96478466_96478576	0.0185647	SOX3_SOX2	ENST00000274382.4|LIX1|ENSG00000145721.7|Lix1 homolog (chicken)
hg19_v2_chr19_+_17416457_17416477	0.0185463	SOX3_SOX2	ENST00000252602.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr17_+_70036164_70036164	0.0185296	SOX3_SOX2	ENST00000602013.1|AC007461.1|ENSG00000267893.1|Uncharacterized protein
hg19_v2_chr17_+_38171681_38171740	0.0185295	SOX3_SOX2	ENST00000225474.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000331769.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394148.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000577675.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr7_-_105516923_105516982	0.0185025	SOX3_SOX2	ENST00000478915.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr7_-_151511911_151511962	0.0183791	SOX3_SOX2	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr20_+_10415931_10416011	0.0183456	SOX3_SOX2	ENST00000334534.5|SLX4IP|ENSG00000149346.10|SLX4 interacting protein
hg19_v2_chr4_-_120549163_120549220	0.018245	SOX3_SOX2	ENST00000394439.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific 	ENST00000420633.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr20_+_55099542_55099542	0.0182368	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr7_+_30185406_30185417	0.0182228	SOX3_SOX2	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr5_-_131347583_131347870	0.0182056	SOX3_SOX2	ENST00000379255.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000430403.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000544770.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379246.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000414078.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000441995.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6
hg19_v2_chr12_-_57882577_57882614	0.0181313	SOX3_SOX2	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr17_+_34842473_34842507	0.0181293	SOX3_SOX2	ENST00000490126.2|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000225410.4|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3
hg19_v2_chr2_-_224810070_224810104	0.0181072	SOX3_SOX2	ENST00000429915.1|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1 	ENST00000233055.4|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1
hg19_v2_chr13_+_24144509_24144589	0.0180946	SOX3_SOX2	ENST00000248484.4|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr8_+_9009202_9009252	0.0180892	SOX3_SOX2	ENST00000518496.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr3_+_125694347_125694467	0.0180785	SOX3_SOX2	ENST00000505382.1|ROPN1B|ENSG00000114547.5|rhophilin associated tail protein 1B 	ENST00000511082.1|ROPN1B|ENSG00000114547.5|rhophilin associated tail protein 1B
hg19_v2_chr9_-_36400213_36400296	0.0180454	SOX3_SOX2	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr7_-_22233442_22233527	0.0179517	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr19_+_49467232_49467266	0.0178496	SOX3_SOX2	ENST00000599784.1|CTD-2639E6.9|ENSG00000267898.1|CTD-2639E6.9	ENST00000594305.1|CTD-2639E6.9|ENSG00000267898.1|CTD-2639E6.9
hg19_v2_chr13_+_43355683_43355705	0.0178169	SOX3_SOX2	ENST00000537894.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr7_+_99613195_99613206	0.0177557	SOX3_SOX2	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr19_-_46476791_46476819	0.0177383	SOX3_SOX2	ENST00000263257.5|NOVA2|ENSG00000104967.6|neuro-oncological ventral antigen 2
hg19_v2_chr8_-_18744528_18744585	0.017415	SOX3_SOX2	ENST00000523619.1|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr17_-_62050278_62050278	0.0173856	SOX3_SOX2	ENST00000578147.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit 	ENST00000435607.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit
hg19_v2_chr2_-_216240386_216240458	0.0173165	SOX3_SOX2	ENST00000438981.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chrX_+_100645812_100646008	0.0172824	SOX3_SOX2	ENST00000427805.2|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000553110.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000392994.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000409338.1|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough 	ENST00000409170.3|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough
hg19_v2_chr19_-_17445613_17445648	0.0172817	SOX3_SOX2	ENST00000159087.4|ANO8|ENSG00000074855.6|anoctamin 8
hg19_v2_chr5_+_140787600_140787770	0.0172245	SOX3_SOX2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr17_-_39677971_39678038	0.0171324	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr14_-_80697396_80697402	0.0170979	SOX3_SOX2	ENST00000557010.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr15_-_80695917_80695917	0.016915	SOX3_SOX2	ENST00000559008.1|RP11-210M15.2|ENSG00000259495.1|Uncharacterized protein
hg19_v2_chr6_-_139695757_139695795	0.016911	SOX3_SOX2	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr15_-_65360450_65360574	0.0168348	SOX3_SOX2	ENST00000220062.4|RASL12|ENSG00000103710.6|RAS-like, family 12
hg19_v2_chr22_-_45404819_45404874	0.016827	SOX3_SOX2	ENST00000447824.3|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000404079.2|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000420689.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000403565.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B
hg19_v2_chr19_-_47164386_47164456	0.0167706	SOX3_SOX2	ENST00000391916.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3 	ENST00000410105.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr17_-_17184605_17184622	0.0167255	SOX3_SOX2	ENST00000268717.5|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr2_-_160568918_160568979	0.0166482	SOX3_SOX2	ENST00000453016.1|AC009961.3|ENSG00000226266.2|AC009961.3	ENST00000607836.1|AC009961.3|ENSG00000226266.2|AC009961.3
hg19_v2_chr5_+_175792459_175792513	0.0166205	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr2_-_170219037_170219050	0.0166147	SOX3_SOX2	ENST00000443831.1|LRP2|ENSG00000081479.8|low density lipoprotein receptor-related protein 2
hg19_v2_chr17_-_9940058_9940074	0.0166076	SOX3_SOX2	ENST00000585266.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr21_+_33784670_33784696	0.0165803	SOX3_SOX2	ENST00000300255.2|EVA1C|ENSG00000166979.8|eva-1 homolog C (C. elegans)
hg19_v2_chrX_+_21958814_21958864	0.0165392	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr21_+_17909594_17909663	0.0165261	SOX3_SOX2	ENST00000441820.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602280.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr1_-_65432171_65432252	0.0165057	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr12_+_94542459_94542513	0.0164622	SOX3_SOX2	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr17_-_76719638_76719657	0.0164464	SOX3_SOX2	ENST00000587308.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr5_-_171881362_171881397	0.0162681	SOX3_SOX2	ENST00000519643.1|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr2_-_43266680_43266701	0.0162005	SOX3_SOX2	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr20_+_44036900_44036984	0.0160256	SOX3_SOX2	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr2_+_202098203_202098256	0.0160089	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr11_-_102714534_102714534	0.0159258	SOX3_SOX2	ENST00000299855.5|MMP3|ENSG00000149968.7|matrix metallopeptidase 3 (stromelysin 1, progelatinase)
hg19_v2_chr5_+_121647924_121647940	0.0159009	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr2_-_208489275_208489346	0.015772	SOX3_SOX2	ENST00000272839.3|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000426075.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chrX_+_48114752_48114830	0.0157483	SOX3_SOX2	ENST00000376919.3|SSX1|ENSG00000126752.7|synovial sarcoma, X breakpoint 1
hg19_v2_chr6_+_130339710_130339745	0.0156352	SOX3_SOX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr7_-_143579973_143579998	0.0155907	SOX3_SOX2	ENST00000460532.1|FAM115A|ENSG00000198420.5|family with sequence similarity 115, member A 	ENST00000491908.1|FAM115A|ENSG00000198420.5|family with sequence similarity 115, member A
hg19_v2_chr19_+_39904168_39904468	0.0155851	SOX3_SOX2	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr13_+_25946201_25946215	0.015551	SOX3_SOX2	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr6_-_105850937_105850983	0.0155437	SOX3_SOX2	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr13_-_95131923_95131944	0.015532	SOX3_SOX2	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr10_+_89622870_89622870	0.0154363	SOX3_SOX2	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr7_-_78400364_78400403	0.015434	SOX3_SOX2	ENST00000535697.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr12_-_45307711_45307922	0.0153374	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr6_-_2962331_2962391	0.0153066	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr19_+_52772821_52772828	0.0152593	SOX3_SOX2	ENST00000439461.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr12_+_22778291_22778357	0.015196	SOX3_SOX2	ENST00000545979.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr4_-_99578776_99578786	0.0151245	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr11_-_46142505_46142565	0.0150964	SOX3_SOX2	ENST00000524497.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000418153.2|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr5_+_34656331_34656351	0.0150325	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr1_-_225840747_225840860	0.0150324	SOX3_SOX2	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr6_+_88054530_88054567	0.0149742	SOX3_SOX2	ENST00000388923.4|C6orf163|ENSG00000203872.6|chromosome 6 open reading frame 163
hg19_v2_chr5_-_98262240_98262240	0.0149599	SOX3_SOX2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr7_+_95115210_95115217	0.0148804	SOX3_SOX2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr2_-_235405679_235405739	0.0148426	SOX3_SOX2	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr5_+_121647764_121647876	0.0148353	SOX3_SOX2	ENST00000261368.8|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379533.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379536.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379538.3|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr5_-_83680603_83680617	0.0147842	SOX3_SOX2	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr1_+_212475148_212475207	0.0147259	SOX3_SOX2	ENST00000537030.3|PPP2R5A|ENSG00000066027.7|protein phosphatase 2, regulatory subunit B', alpha
hg19_v2_chr2_+_179059188_179059250	0.0146955	SOX3_SOX2	ENST00000392505.2|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000359685.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000357080.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000409045.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr20_+_58203664_58203713	0.0146756	SOX3_SOX2	ENST00000541461.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr12_-_6233828_6233843	0.0146439	SOX3_SOX2	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr2_+_176964458_176964540	0.0146355	SOX3_SOX2	ENST00000406506.2|HOXD12|ENSG00000170178.5|homeobox D12 	ENST00000404162.2|HOXD12|ENSG00000170178.5|homeobox D12
hg19_v2_chr3_-_69101461_69101494	0.0146029	SOX3_SOX2	ENST00000543976.1|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr1_+_32739733_32739746	0.0145558	SOX3_SOX2	ENST00000333070.4|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase
hg19_v2_chr1_+_75594119_75594119	0.0144546	SOX3_SOX2	ENST00000294638.5|LHX8|ENSG00000162624.10|LIM homeobox 8
hg19_v2_chr1_-_228603694_228603730	0.014391	SOX3_SOX2	ENST00000366697.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr9_+_36136700_36136742	0.0142664	SOX3_SOX2	ENST00000396613.3|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377959.1|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377960.4|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2
hg19_v2_chr19_+_34663551_34663564	0.0141381	SOX3_SOX2	ENST00000586157.1|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr2_+_228337079_228337092	0.0141321	SOX3_SOX2	ENST00000409315.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000373671.3|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000409171.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr3_-_185655795_185655924	0.014117	SOX3_SOX2	ENST00000342294.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000382191.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000453386.2|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr16_-_19533404_19533467	0.0141016	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr8_+_67405438_67405450	0.0140233	SOX3_SOX2	ENST00000305454.3|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr6_-_167040731_167040745	0.0139383	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chrX_-_17878827_17878846	0.0138825	SOX3_SOX2	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr5_+_140743859_140743898	0.0138159	SOX3_SOX2	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr1_+_26737292_26737322	0.013789	SOX3_SOX2	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr4_-_39979576_39979588	0.0137013	SOX3_SOX2	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr14_+_60712463_60712475	0.0136896	SOX3_SOX2	ENST00000325642.3|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A 	ENST00000529574.1|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A
hg19_v2_chr9_+_15422702_15422883	0.0136809	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr2_-_178128199_178128245	0.0135671	SOX3_SOX2	ENST00000449627.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr19_-_18385221_18385245	0.013555	SOX3_SOX2	ENST00000595654.2|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000593659.1|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000599528.1|KIAA1683|ENSG00000130518.12|KIAA1683
hg19_v2_chr12_-_57882498_57882509	0.0133147	SOX3_SOX2	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr17_-_42276574_42276742	0.0132867	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr16_+_1359511_1359804	0.0132528	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chr8_+_107460147_107460207	0.0132149	SOX3_SOX2	ENST00000442977.2|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr9_+_19408999_19409057	0.0132136	SOX3_SOX2	ENST00000340967.2|ACER2|ENSG00000177076.4|alkaline ceramidase 2
hg19_v2_chr12_+_106976678_106976708	0.013213	SOX3_SOX2	ENST00000392842.1|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr4_+_89206076_89206103	0.0131793	SOX3_SOX2	ENST00000500009.2|RP11-10L7.1|ENSG00000246375.2|RP11-10L7.1
hg19_v2_chr11_+_93861993_93862102	0.0130636	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr15_+_72766651_72766680	0.0129753	SOX3_SOX2	ENST00000379887.4|ARIH1|ENSG00000166233.8|ariadne RBR E3 ubiquitin protein ligase 1
hg19_v2_chr17_-_33521412_33521412	0.0129529	SOX3_SOX2	ENST00000297307.5|SLC35G3|ENSG00000164729.6|solute carrier family 35, member G3
hg19_v2_chr1_+_32930647_32930684	0.0128098	SOX3_SOX2	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr1_-_202858227_202858283	0.0127687	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chr12_-_7281469_7281538	0.0127401	SOX3_SOX2	ENST00000542370.1|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular 	ENST00000266560.3|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular
hg19_v2_chr11_-_64013663_64013672	0.0127123	SOX3_SOX2	ENST00000392210.2|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr1_-_9970227_9970356	0.0127085	SOX3_SOX2	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr4_+_71587669_71587752	0.0126267	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr11_+_113930955_113930979	0.0126139	SOX3_SOX2	ENST00000535700.1|ZBTB16|ENSG00000109906.9|zinc finger and BTB domain containing 16
hg19_v2_chr10_+_48359344_48359376	0.0126002	SOX3_SOX2	ENST00000412534.1|ZNF488|ENSG00000165388.8|zinc finger protein 488 	ENST00000444585.1|ZNF488|ENSG00000165388.8|zinc finger protein 488
hg19_v2_chr6_-_32811771_32811831	0.0125287	SOX3_SOX2	ENST00000395339.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8 	ENST00000374882.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8
hg19_v2_chr14_-_24020858_24020988	0.0124802	SOX3_SOX2	ENST00000419474.3|ZFHX2|ENSG00000136367.12|zinc finger homeobox 2
hg19_v2_chr3_+_189507460_189507471	0.0124326	SOX3_SOX2	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr12_+_51818749_51818901	0.0124138	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr12_-_11150474_11150474	0.0123392	SOX3_SOX2	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chr14_-_106322288_106322325	0.0123247	SOX3_SOX2	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr15_+_93749295_93749295	0.0122941	SOX3_SOX2	ENST00000599897.1|AC112693.2|ENSG00000269360.1|AC112693.2
hg19_v2_chr5_+_147774275_147774340	0.0122902	SOX3_SOX2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr22_-_22090064_22090127	0.012172	SOX3_SOX2	ENST00000339468.3|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr7_+_87257701_87257770	0.0119219	SOX3_SOX2	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr5_+_66300464_66300505	0.0119195	SOX3_SOX2	ENST00000436277.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr2_-_158182322_158182358	0.0119119	SOX3_SOX2	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr11_+_35198243_35198260	0.0117193	SOX3_SOX2	ENST00000528455.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr3_-_52719546_52719636	0.0116686	SOX3_SOX2	ENST00000439181.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000449505.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr12_-_12674032_12674059	0.0116385	SOX3_SOX2	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr4_+_175204818_175204833	0.0115179	SOX3_SOX2	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr8_-_21669826_21669869	0.011509	SOX3_SOX2	ENST00000517328.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr14_-_50583271_50583318	0.0114347	SOX3_SOX2	ENST00000395860.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase 	ENST00000395859.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase
hg19_v2_chrX_+_46306714_46306741	0.011371	SOX3_SOX2	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr11_+_61129456_61129527	0.0112884	SOX3_SOX2	ENST00000278826.6|TMEM138|ENSG00000149483.7|transmembrane protein 138
hg19_v2_chr2_+_202937972_202937988	0.0112255	SOX3_SOX2	ENST00000541917.1|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012  	ENST00000295844.3|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012
hg19_v2_chr12_-_92539614_92539673	0.0111686	SOX3_SOX2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr19_+_44100727_44100804	0.0111298	SOX3_SOX2	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr14_-_50999373_50999384	0.010998	SOX3_SOX2	ENST00000554273.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr13_+_76362974_76363015	0.010989	SOX3_SOX2	ENST00000497947.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr5_+_66300446_66300463	0.0108976	SOX3_SOX2	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr3_+_29323043_29323132	0.0108898	SOX3_SOX2	ENST00000452462.1|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3 	ENST00000456853.1|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3
hg19_v2_chrX_+_100333709_100333876	0.0108441	SOX3_SOX2	ENST00000372930.4|TMEM35|ENSG00000126950.7|transmembrane protein 35
hg19_v2_chr19_-_36705763_36705777	0.0108376	SOX3_SOX2	ENST00000591473.1|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr7_+_138145076_138145116	0.0107745	SOX3_SOX2	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr5_-_135701164_135701225	0.0107564	SOX3_SOX2	ENST00000355180.3|TRPC7|ENSG00000069018.13|transient receptor potential cation channel, subfamily C, member 7 	ENST00000426057.2|TRPC7|ENSG00000069018.13|transient receptor potential cation channel, subfamily C, member 7 	ENST00000513104.1|TRPC7|ENSG00000069018.13|transient receptor potential cation channel, subfamily C, member 7
hg19_v2_chr13_+_43355732_43355757	0.0105827	SOX3_SOX2	ENST00000313851.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr2_-_86564776_86564813	0.0102961	SOX3_SOX2	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr18_+_7946839_7946903	0.0102362	SOX3_SOX2	ENST00000578916.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr5_-_140700322_140700358	0.0102232	SOX3_SOX2	ENST00000313368.5|TAF7|ENSG00000178913.5|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
hg19_v2_chr4_-_186733363_186733392	0.0102092	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr3_-_197024394_197024740	0.010176	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr9_-_23826298_23826344	0.0101279	SOX3_SOX2	ENST00000380117.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr5_+_179135246_179135327	0.0100464	SOX3_SOX2	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr1_+_41174988_41175047	0.0100207	SOX3_SOX2	ENST00000372652.1|NFYC|ENSG00000066136.15|nuclear transcription factor Y, gamma
hg19_v2_chr5_-_83680192_83680209	0.00999921	SOX3_SOX2	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr15_+_93447675_93447703	0.0099696	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr2_-_198540719_198540748	0.009968	SOX3_SOX2	ENST00000295049.4|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr4_+_156680143_156680152	0.0099434	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr9_+_125795788_125795957	0.00993729	SOX3_SOX2	ENST00000373643.5|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr6_+_36562132_36562154	0.00990952	SOX3_SOX2	ENST00000373715.6|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3 	ENST00000339436.7|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3
hg19_v2_chr6_-_111888474_111888563	0.00980691	SOX3_SOX2	ENST00000368735.1|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr3_-_12587055_12587055	0.0097987	SOX3_SOX2	ENST00000564146.3|C3orf83|ENSG00000225526.4|chromosome 3 open reading frame 83
hg19_v2_chr8_-_128960591_128960591	0.00977017	SOX3_SOX2	ENST00000539634.1|TMEM75|ENSG00000256655.1|transmembrane protein 75
hg19_v2_chr17_-_71258491_71258491	0.00972914	SOX3_SOX2	ENST00000397671.1|CPSF4L|ENSG00000187959.5|cleavage and polyadenylation specific factor 4-like
hg19_v2_chr3_+_189507523_189507590	0.00971836	SOX3_SOX2	ENST00000437221.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392463.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392461.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000449992.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000456148.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr3_+_15643245_15643318	0.00970305	SOX3_SOX2	ENST00000303498.5|BTD|ENSG00000169814.8|biotinidase 	ENST00000437172.1|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr7_-_76829125_76829143	0.00968479	SOX3_SOX2	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr12_-_122907091_122907186	0.00967646	SOX3_SOX2	ENST00000358808.2|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000361654.4|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000539080.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000537178.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr14_-_68159152_68159200	0.00967136	SOX3_SOX2	ENST00000554035.1|RDH11|ENSG00000072042.8|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
hg19_v2_chr14_-_103589246_103589397	0.0096043	SOX3_SOX2	ENST00000558224.1|LINC00677|ENSG00000259717.1|long intergenic non-protein coding RNA 677 	ENST00000560742.1|LINC00677|ENSG00000259717.1|long intergenic non-protein coding RNA 677
hg19_v2_chr8_+_11660120_11660221	0.00942207	SOX3_SOX2	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr5_-_111093081_111093111	0.00935431	SOX3_SOX2	ENST00000453526.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000509427.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr12_+_58937907_58937907	0.0092827	SOX3_SOX2	ENST00000546977.1|RP11-362K2.2|ENSG00000258231.1|Protein LOC100506869
hg19_v2_chr19_-_51141196_51141302	0.00925965	SOX3_SOX2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr11_-_70672645_70672711	0.00919059	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr5_+_56205081_56205092	0.00900843	SOX3_SOX2	ENST00000285947.2|SETD9|ENSG00000155542.7|SET domain containing 9 	ENST00000541720.1|SETD9|ENSG00000155542.7|SET domain containing 9
hg19_v2_chr8_-_27468717_27468788	0.00900195	SOX3_SOX2	ENST00000520796.1|CLU|ENSG00000120885.15|clusterin 	ENST00000520491.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr5_+_129083772_129083814	0.00899162	SOX3_SOX2	ENST00000564719.1|KIAA1024L|ENSG00000186367.5|KIAA1024-like
hg19_v2_chr17_+_65373531_65373577	0.00898341	SOX3_SOX2	ENST00000580974.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr17_+_27369918_27370010	0.00892153	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr5_+_98104978_98105010	0.00889572	SOX3_SOX2	ENST00000308234.7|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr17_+_41158742_41158822	0.00886965	SOX3_SOX2	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr14_+_75230011_75230120	0.008864	SOX3_SOX2	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr10_-_14614122_14614188	0.00886283	SOX3_SOX2	ENST00000378465.3|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000452706.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378458.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr11_-_85397167_85397320	0.00886235	SOX3_SOX2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr7_+_117120017_117120087	0.00878382	SOX3_SOX2	ENST00000003084.6|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 	ENST00000454343.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr3_+_35680339_35680437	0.00873857	SOX3_SOX2	ENST00000450234.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr14_-_100772796_100772827	0.00872168	SOX3_SOX2	ENST00000554060.1|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chr14_-_89878369_89878496	0.00871314	SOX3_SOX2	ENST00000553840.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000556916.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr13_-_111567353_111567432	0.00867859	SOX3_SOX2	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chr20_+_58571419_58571449	0.00865965	SOX3_SOX2	ENST00000244049.3|CDH26|ENSG00000124215.12|cadherin 26 	ENST00000350849.6|CDH26|ENSG00000124215.12|cadherin 26 	ENST00000456106.1|CDH26|ENSG00000124215.12|cadherin 26
hg19_v2_chr3_-_116164306_116164380	0.00864356	SOX3_SOX2	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr2_+_220408724_220408789	0.00842013	SOX3_SOX2	ENST00000421791.1|TMEM198|ENSG00000188760.6|transmembrane protein 198 	ENST00000373883.3|TMEM198|ENSG00000188760.6|transmembrane protein 198 	ENST00000451952.1|TMEM198|ENSG00000188760.6|transmembrane protein 198
hg19_v2_chr8_-_11660077_11660077	0.00833243	SOX3_SOX2	ENST00000533405.1|RP11-297N6.4|ENSG00000255046.1|Uncharacterized protein
hg19_v2_chr5_+_148960931_148961073	0.00823591	SOX3_SOX2	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr3_+_182983126_182983135	0.00819139	SOX3_SOX2	ENST00000481531.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr8_+_11660227_11660306	0.00816483	SOX3_SOX2	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr13_-_39611956_39611976	0.0081346	SOX3_SOX2	ENST00000418503.1|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr6_-_91006627_91006641	0.00810866	SOX3_SOX2	ENST00000537989.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr14_+_24407940_24407940	0.00809429	SOX3_SOX2	ENST00000354854.1|DHRS4-AS1|ENSG00000197775.1|DHRS4-AS1
hg19_v2_chr11_-_111794446_111794471	0.00803494	SOX3_SOX2	ENST00000527950.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr19_+_20011775_20011870	0.00796039	SOX3_SOX2	ENST00000592245.1|AC007204.2|ENSG00000267268.1|AC007204.2	ENST00000592160.1|ZNF93|ENSG00000184635.9|zinc finger protein 93 	ENST00000343769.5|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chr4_-_100484825_100484901	0.00793204	SOX3_SOX2	ENST00000273962.3|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000514547.1|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000455368.2|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae)
hg19_v2_chr19_-_35323762_35323779	0.00783425	SOX3_SOX2	ENST00000590963.1|CTC-523E23.4|ENSG00000267767.2|CTC-523E23.4
hg19_v2_chr3_+_52828805_52828821	0.00782555	SOX3_SOX2	ENST00000416872.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3 	ENST00000449956.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3
hg19_v2_chr19_-_42498369_42498390	0.00781648	SOX3_SOX2	ENST00000302102.5|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENST00000545399.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr17_-_62308087_62308116	0.00777721	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr19_+_56989485_56989565	0.00769819	SOX3_SOX2	ENST00000585445.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000586091.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000594783.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000592146.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000588158.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000299997.4|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000591797.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr8_-_7274385_7274385	0.00767406	SOX3_SOX2	ENST00000318157.2|DEFB4B|ENSG00000177257.2|defensin, beta 4B
hg19_v2_chr18_+_9885934_9885943	0.00762658	SOX3_SOX2	ENST00000357775.5|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr9_-_127358087_127358170	0.0075121	SOX3_SOX2	ENST00000475178.1|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr15_+_96869165_96869183	0.00742537	SOX3_SOX2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr12_-_16759711_16759734	0.00730624	SOX3_SOX2	ENST00000447609.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr8_+_67624653_67624752	0.00727576	SOX3_SOX2	ENST00000521198.2|SGK3|ENSG00000104205.8|serum/glucocorticoid regulated kinase family, member 3
hg19_v2_chr12_+_104680659_104680777	0.00714068	SOX3_SOX2	ENST00000526691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000388854.3|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000354940.6|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526390.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531689.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr3_-_15540055_15540120	0.00705796	SOX3_SOX2	ENST00000605797.1|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 	ENST00000435459.2|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
hg19_v2_chr3_-_58196688_58196706	0.00705571	SOX3_SOX2	ENST00000486455.1|DNASE1L3|ENSG00000163687.9|deoxyribonuclease I-like 3
hg19_v2_chr3_-_52002403_52002433	0.00699596	SOX3_SOX2	ENST00000490063.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000468324.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000497653.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000484633.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr1_+_42928945_42929025	0.00693412	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chr12_+_50898881_50898907	0.00685628	SOX3_SOX2	ENST00000301180.5|DIP2B|ENSG00000066084.8|DIP2 disco-interacting protein 2 homolog B (Drosophila)
hg19_v2_chr6_-_41715128_41715142	0.00677517	SOX3_SOX2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr22_-_31536480_31536593	0.00673395	SOX3_SOX2	ENST00000215885.3|PLA2G3|ENSG00000100078.3|phospholipase A2, group III
hg19_v2_chr15_+_59665194_59665232	0.00672674	SOX3_SOX2	ENST00000560394.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr14_-_21994337_21994442	0.00662187	SOX3_SOX2	ENST00000537235.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2 	ENST00000450879.2|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr21_+_17442799_17442853	0.00658927	SOX3_SOX2	ENST00000602580.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000458468.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602935.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr1_+_87797351_87797441	0.00655383	SOX3_SOX2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr11_-_105948040_105948082	0.0064875	SOX3_SOX2	ENST00000534815.1|KBTBD3|ENSG00000182359.10|kelch repeat and BTB (POZ) domain containing 3
hg19_v2_chr12_-_16759440_16759465	0.00647529	SOX3_SOX2	ENST00000537304.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr12_-_52887034_52887049	0.00643021	SOX3_SOX2	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr5_-_114515734_114515944	0.00640091	SOX3_SOX2	ENST00000514154.1|TRIM36|ENSG00000152503.5|tripartite motif containing 36 	ENST00000282369.3|TRIM36|ENSG00000152503.5|tripartite motif containing 36
hg19_v2_chr7_-_142583506_142583510	0.00639799	SOX3_SOX2	ENST00000359396.3|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr3_+_123813543_123813587	0.00632132	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr2_+_181845843_181845859	0.00628659	SOX3_SOX2	ENST00000602710.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr14_+_72052983_72053003	0.0061826	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr2_-_237172988_237173052	0.00617473	SOX3_SOX2	ENST00000409749.3|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18 	ENST00000430053.1|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18
hg19_v2_chr7_+_117120106_117120149	0.00613651	SOX3_SOX2	ENST00000426809.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr15_-_35047166_35047204	0.00608269	SOX3_SOX2	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr22_+_42372764_42372868	0.00606822	SOX3_SOX2	ENST00000396426.3|SEPT3|ENSG00000100167.15|septin 3 	ENST00000406029.1|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr11_-_71753188_71753200	0.00606592	SOX3_SOX2	ENST00000543009.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr15_-_40331356_40331389	0.00601869	SOX3_SOX2	ENST00000560773.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein) 	ENST00000267884.6|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr2_-_224903995_224904036	0.00595177	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr12_-_14133053_14133159	0.00589414	SOX3_SOX2	ENST00000609686.1|GRIN2B|ENSG00000273079.1|glutamate receptor, ionotropic, N-methyl D-aspartate 2B
hg19_v2_chr10_-_61900762_61900779	0.00579251	SOX3_SOX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr15_+_92937058_92937133	0.00575905	SOX3_SOX2	ENST00000268164.3|ST8SIA2|ENSG00000140557.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
hg19_v2_chr13_-_103053946_103054124	0.0057266	SOX3_SOX2	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr2_+_177001685_177001685	0.00569629	SOX3_SOX2	ENST00000432796.2|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr6_-_111136513_111136525	0.00551066	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr16_-_74455290_74455290	0.00549575	SOX3_SOX2	ENST00000339953.5|CLEC18B|ENSG00000140839.7|C-type lectin domain family 18, member B
hg19_v2_chr4_-_143226979_143226990	0.00545276	SOX3_SOX2	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr17_-_56065484_56065513	0.00542682	SOX3_SOX2	ENST00000581208.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chr17_+_4487294_4487307	0.00527193	SOX3_SOX2	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr3_+_38307313_38307397	0.00526568	SOX3_SOX2	ENST00000450935.2|SLC22A13|ENSG00000172940.7|solute carrier family 22 (organic anion/urate transporter), member 13
hg19_v2_chr11_-_75917569_75917576	0.00525692	SOX3_SOX2	ENST00000322563.3|WNT11|ENSG00000085741.8|wingless-type MMTV integration site family, member 11
hg19_v2_chr1_+_166808667_166808690	0.00507488	SOX3_SOX2	ENST00000537173.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain 	ENST00000536514.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain 	ENST00000449930.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr13_-_33760216_33760234	0.0050723	SOX3_SOX2	ENST00000255486.4|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr17_+_43971643_43971748	0.00506407	SOX3_SOX2	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr3_+_160473996_160474033	0.00504165	SOX3_SOX2	ENST00000498165.1|PPM1L|ENSG00000163590.9|protein phosphatase, Mg2+/Mn2+ dependent, 1L
hg19_v2_chr13_-_46952645_46952780	0.00503401	SOX3_SOX2	ENST00000439642.1|KIAA0226L|ENSG00000102445.14|KIAA0226-like
hg19_v2_chr18_+_9885961_9885992	0.00501468	SOX3_SOX2	ENST00000306084.6|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr15_+_34310428_34310428	0.00493362	SOX3_SOX2	ENST00000557872.1|CHRM5|ENSG00000184984.8|cholinergic receptor, muscarinic 5
hg19_v2_chr17_-_48072574_48072597	0.00485233	SOX3_SOX2	ENST00000434704.2|DLX3|ENSG00000064195.7|distal-less homeobox 3
hg19_v2_chr15_+_93443419_93443580	0.00478074	SOX3_SOX2	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr1_+_61330931_61331017	0.00466088	SOX3_SOX2	ENST00000371191.1|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr13_+_32605437_32605473	0.00461142	SOX3_SOX2	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr19_-_46706186_46706343	0.00457814	SOX3_SOX2	ENST00000601263.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000598754.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000594027.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000598518.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000599817.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000595673.1|AC006262.5|ENSG00000268621.1|AC006262.5
hg19_v2_chr17_-_79359021_79359029	0.0045469	SOX3_SOX2	ENST00000572301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr16_+_290181_290221	0.00452878	SOX3_SOX2	ENST00000417499.1|ITFG3|ENSG00000167930.11|integrin alpha FG-GAP repeat containing 3
hg19_v2_chr16_-_8962544_8962584	0.00447297	SOX3_SOX2	ENST00000570125.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr12_+_19358192_19358212	0.00445981	SOX3_SOX2	ENST00000538305.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr3_+_164924769_164924801	0.0043533	SOX3_SOX2	ENST00000494915.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2
hg19_v2_chr1_-_31902614_31902614	0.00417113	SOX3_SOX2	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr2_-_198540751_198540790	0.00405435	SOX3_SOX2	ENST00000429081.1|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr5_+_34656450_34656523	0.00403108	SOX3_SOX2	ENST00000514527.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr12_-_13248732_13248744	0.00396859	SOX3_SOX2	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr3_+_50192499_50192534	0.00382457	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr10_-_62149433_62149488	0.00380991	SOX3_SOX2	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr7_+_134212312_134212344	0.0037916	SOX3_SOX2	ENST00000359579.4|AKR1B10|ENSG00000198074.5|aldo-keto reductase family 1, member B10 (aldose reductase)
hg19_v2_chr9_+_117904097_117904097	0.00376752	SOX3_SOX2	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr4_+_154074217_154074270	0.00375652	SOX3_SOX2	ENST00000437508.2|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr3_-_114173654_114173696	0.00372053	SOX3_SOX2	ENST00000482689.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr1_+_223566715_223566791	0.00371666	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr8_+_132320792_132320868	0.00371327	SOX3_SOX2	ENST00000519695.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1	ENST00000524275.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1
hg19_v2_chr22_+_44568825_44568837	0.00367928	SOX3_SOX2	ENST00000422871.1|PARVG|ENSG00000138964.12|parvin, gamma
hg19_v2_chr17_+_8339164_8339186	0.00357176	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr1_-_156399184_156399225	0.00356426	SOX3_SOX2	ENST00000368243.1|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000357975.4|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000310027.5|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000400991.2|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61
hg19_v2_chr22_+_20905286_20905316	0.00354529	SOX3_SOX2	ENST00000428629.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr1_+_174417095_174417212	0.0035314	SOX3_SOX2	ENST00000367685.2|GPR52|ENSG00000203737.2|G protein-coupled receptor 52
hg19_v2_chr12_+_101188718_101188745	0.00351161	SOX3_SOX2	ENST00000299222.9|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392977.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr9_-_23779367_23779378	0.00350663	SOX3_SOX2	ENST00000440102.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr19_-_42348692_42348771	0.00343508	SOX3_SOX2	ENST00000330743.3|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4 	ENST00000601246.1|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4
hg19_v2_chr7_-_100425112_100425121	0.00339442	SOX3_SOX2	ENST00000358173.3|EPHB4|ENSG00000196411.5|EPH receptor B4
hg19_v2_chr10_-_46168156_46168246	0.00334621	SOX3_SOX2	ENST00000374371.2|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000335258.7|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chr19_-_51472823_51472929	0.00317225	SOX3_SOX2	ENST00000310157.2|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr19_-_39826639_39826825	0.00312708	SOX3_SOX2	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr7_+_70597109_70597155	0.00310927	SOX3_SOX2	ENST00000333538.5|WBSCR17|ENSG00000185274.7|Williams-Beuren syndrome chromosome region 17
hg19_v2_chr19_+_40873617_40873641	0.00304704	SOX3_SOX2	ENST00000599353.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3
hg19_v2_chr6_-_42981651_42981706	0.00300581	SOX3_SOX2	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr12_-_122985067_122985268	0.00298874	SOX3_SOX2	ENST00000540586.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8 	ENST00000543897.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr12_-_13248705_13248710	0.00295736	SOX3_SOX2	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chrX_-_71792477_71792720	0.0028951	SOX3_SOX2	ENST00000421523.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000415409.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373559.4|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373556.3|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373560.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373583.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000429103.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373571.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373554.1|HDAC8|ENSG00000147099.15|histone deacetylase 8
hg19_v2_chr1_-_113160826_113160844	0.00283845	SOX3_SOX2	ENST00000538187.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369664.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chr12_+_49297887_49297898	0.00282786	SOX3_SOX2	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr13_-_27334879_27334930	0.00281648	SOX3_SOX2	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr1_+_202183200_202183283	0.00267276	SOX3_SOX2	ENST00000439764.2|LGR6|ENSG00000133067.13|leucine-rich repeat containing G protein-coupled receptor 6
hg19_v2_chr9_-_98279241_98279339	0.00264729	SOX3_SOX2	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr14_+_93799556_93799577	0.00263451	SOX3_SOX2	ENST00000256339.4|UNC79|ENSG00000133958.9|unc-79 homolog (C. elegans)
hg19_v2_chr3_+_100211412_100211504	0.00248122	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr19_-_36705547_36705597	0.00236825	SOX3_SOX2	ENST00000304116.5|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr13_+_76334567_76334582	0.00236643	SOX3_SOX2	ENST00000321797.8|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr20_-_30458354_30458384	0.00232198	SOX3_SOX2	ENST00000428829.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr1_-_173174681_173174702	0.00230015	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr1_+_200842083_200842116	0.0022125	SOX3_SOX2	ENST00000304244.2|GPR25|ENSG00000170128.2|G protein-coupled receptor 25
hg19_v2_chr19_+_36132631_36132695	0.00220311	SOX3_SOX2	ENST00000379026.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000379023.4|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000402764.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000479824.1|ETV2|ENSG00000105672.10|ets variant 2
hg19_v2_chr17_-_7145106_7145172	0.00214211	SOX3_SOX2	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr1_+_32739714_32739730	0.00202716	SOX3_SOX2	ENST00000461712.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000373562.3|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000477031.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000373557.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase
hg19_v2_chrX_-_138724677_138724887	0.00200015	SOX3_SOX2	ENST00000370573.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000338585.6|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000370576.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr19_+_18726786_18726884	0.00199275	SOX3_SOX2	ENST00000594709.1|TMEM59L|ENSG00000105696.4|transmembrane protein 59-like
hg19_v2_chr22_-_39052300_39052336	0.00197486	SOX3_SOX2	ENST00000355830.6|FAM227A|ENSG00000184949.11|family with sequence similarity 227, member A
hg19_v2_chr11_-_71752571_71752598	0.00187891	SOX3_SOX2	ENST00000544238.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr5_-_118324200_118324254	0.00184603	SOX3_SOX2	ENST00000515439.3|DTWD2|ENSG00000169570.5|DTW domain containing 2 	ENST00000510708.1|DTWD2|ENSG00000169570.5|DTW domain containing 2
hg19_v2_chr12_-_96793142_96793182	0.00183143	SOX3_SOX2	ENST00000552262.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17 	ENST00000551816.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17 	ENST00000552496.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr1_-_37499726_37499850	0.00181507	SOX3_SOX2	ENST00000373091.3|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3 	ENST00000373093.4|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3
hg19_v2_chr11_+_46402583_46402669	0.00173515	SOX3_SOX2	ENST00000359803.3|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr10_+_93683519_93683594	0.00164213	SOX3_SOX2	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr7_-_6388537_6388611	0.00163167	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr7_-_8302207_8302242	0.00157906	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr4_+_113970772_113970885	0.00157171	SOX3_SOX2	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr20_+_3869423_3869486	0.00150052	SOX3_SOX2	ENST00000497424.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr6_+_32937083_32937101	0.00146156	SOX3_SOX2	ENST00000456339.1|BRD2|ENSG00000204256.8|bromodomain containing 2
hg19_v2_chr5_+_102201430_102201478	0.00128155	SOX3_SOX2	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr2_-_227050079_227050093	0.00127227	SOX3_SOX2	ENST00000423838.1|AC068138.1|ENSG00000235070.3|AC068138.1
hg19_v2_chr9_+_130026756_130026871	0.00123862	SOX3_SOX2	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr6_-_144385698_144385742	0.00118367	SOX3_SOX2	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr1_-_17307173_17307330	0.0011753	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr7_-_75988321_75988348	0.00113536	SOX3_SOX2	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr5_+_172386419_172386480	0.00113095	SOX3_SOX2	ENST00000265100.2|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1 	ENST00000519239.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr7_+_74379083_74379083	0.0011255	SOX3_SOX2	ENST00000361825.7|GATSL1|ENSG00000183086.10|GATS protein-like 1
hg19_v2_chr17_+_21729899_21729906	0.00110699	SOX3_SOX2	ENST00000583708.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr19_-_7990991_7991059	0.00110438	SOX3_SOX2	ENST00000318978.4|CTXN1|ENSG00000178531.4|cortexin 1
hg19_v2_chr9_-_23825956_23826063	0.0011026	SOX3_SOX2	ENST00000397312.2|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr16_-_69390209_69390209	0.00104498	SOX3_SOX2	ENST00000563634.1|RP11-343C2.9|ENSG00000260371.1|Uncharacterized protein
hg19_v2_chr10_-_21806759_21806848	0.000965358	SOX3_SOX2	ENST00000444772.3|SKIDA1|ENSG00000180592.12|SKI/DACH domain containing 1
hg19_v2_chr13_+_24144796_24144809	0.000940472	SOX3_SOX2	ENST00000403372.2|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr1_-_230513367_230513391	0.000931353	SOX3_SOX2	ENST00000321327.2|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5 	ENST00000525115.1|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5
hg19_v2_chr6_-_151712673_151712709	0.000895872	SOX3_SOX2	ENST00000325144.4|ZBTB2|ENSG00000181472.4|zinc finger and BTB domain containing 2
hg19_v2_chr4_-_140477353_140477400	0.000890257	SOX3_SOX2	ENST00000406354.1|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7 	ENST00000506866.2|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7
hg19_v2_chr17_-_76123101_76123168	0.000817335	SOX3_SOX2	ENST00000392467.3|TMC6|ENSG00000141524.11|transmembrane channel-like 6
hg19_v2_chr12_+_54694979_54694993	0.000763785	SOX3_SOX2	ENST00000552848.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr19_-_5292781_5292801	0.000572073	SOX3_SOX2	ENST00000586065.1|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr10_+_97803151_97803348	0.000455488	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr18_-_53089538_53089586	0.000408702	SOX3_SOX2	ENST00000566777.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chrX_-_138724994_138725023	0.000390747	SOX3_SOX2	ENST00000536274.1|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr11_-_6341724_6341762	0.000374671	SOX3_SOX2	ENST00000530979.1|PRKCDBP|ENSG00000170955.9|protein kinase C, delta binding protein
hg19_v2_chr10_+_23217006_23217018	0.000336637	SOX3_SOX2	ENST00000376528.4|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000447081.1|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr6_+_18387570_18387588	0.000311331	SOX3_SOX2	ENST00000259939.3|RNF144B|ENSG00000137393.8|ring finger protein 144B
hg19_v2_chr11_-_64013288_64013343	0.00028537	SOX3_SOX2	ENST00000542235.1|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr4_+_1873155_1873188	0.000283902	SOX3_SOX2	ENST00000507820.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1 	ENST00000514045.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1
hg19_v2_chr3_+_49058444_49058618	0.000281558	SOX3_SOX2	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr10_-_46167722_46167926	0.000267267	SOX3_SOX2	ENST00000374366.3|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000344646.5|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chr9_-_35111420_35111455	0.000255144	SOX3_SOX2	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr8_+_104831554_104831615	0.000223413	SOX3_SOX2	ENST00000408894.2|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr9_-_117150243_117150271	0.000166883	SOX3_SOX2	ENST00000374088.3|AKNA|ENSG00000106948.12|AT-hook transcription factor
hg19_v2_chr1_-_184006829_184006911	0.000158596	SOX3_SOX2	ENST00000361927.4|COLGALT2|ENSG00000198756.6|collagen beta(1-O)galactosyltransferase 2
hg19_v2_chr12_-_95945246_95945270	8.87937e-05	SOX3_SOX2	ENST00000258499.3|USP44|ENSG00000136014.7|ubiquitin specific peptidase 44
hg19_v2_chr3_+_35721106_35721127	7.41875e-05	SOX3_SOX2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr5_-_115872124_115872139	5.02758e-05	SOX3_SOX2	ENST00000515009.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
