hg19_v2_chr8_-_121824374_121824391	0.424089	PAX1_PAX9	ENST00000517992.1|SNTB1|ENSG00000172164.9|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
hg19_v2_chr19_-_409134_409156	0.325987	PAX1_PAX9	ENST00000332235.6|C2CD4C|ENSG00000183186.6|C2 calcium-dependent domain containing 4C
hg19_v2_chr18_-_47814032_47814079	0.218446	PAX1_PAX9	ENST00000589548.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1 	ENST00000591474.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1
hg19_v2_chr19_-_18995029_18995050	0.182514	PAX1_PAX9	ENST00000596048.1|CERS1|ENSG00000223802.3|ceramide synthase 1
hg19_v2_chr9_+_33750515_33750648	0.126641	PAX1_PAX9	ENST00000361005.5|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr17_-_3461092_3461126	0.126102	PAX1_PAX9	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr8_-_23282820_23282846	0.115852	PAX1_PAX9	ENST00000520871.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr6_-_170893268_170893314	0.107076	PAX1_PAX9	ENST00000538195.1|PDCD2|ENSG00000071994.6|programmed cell death 2
hg19_v2_chr9_+_33750667_33750819	0.104483	PAX1_PAX9	ENST00000457896.1|PRSS3|ENSG00000010438.12|protease, serine, 3 	ENST00000342836.4|PRSS3|ENSG00000010438.12|protease, serine, 3 	ENST00000429677.3|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr19_+_14184370_14184428	0.102799	PAX1_PAX9	ENST00000590772.1|hsa-mir-1199|ENSG00000141854.3|hsa-mir-1199
hg19_v2_chr14_-_69261310_69261453	0.0942396	PAX1_PAX9	ENST00000336440.3|ZFP36L1|ENSG00000185650.8|ZFP36 ring finger protein-like 1
hg19_v2_chr8_-_23282797_23282804	0.0927956	PAX1_PAX9	ENST00000524144.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr20_-_17641097_17641152	0.0923898	PAX1_PAX9	ENST00000246043.4|RRBP1|ENSG00000125844.11|ribosome binding protein 1
hg19_v2_chr1_-_204165610_204165626	0.0913219	PAX1_PAX9	ENST00000367194.4|KISS1|ENSG00000170498.7|KiSS-1 metastasis-suppressor
hg19_v2_chr18_-_47813940_47814021	0.0897154	PAX1_PAX9	ENST00000586837.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1 	ENST00000412036.2|CXXC1|ENSG00000154832.10|CXXC finger protein 1 	ENST00000589940.1|CXXC1|ENSG00000154832.10|CXXC finger protein 1
hg19_v2_chr1_+_26759295_26759382	0.0681717	PAX1_PAX9	ENST00000430232.1|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase
hg19_v2_chr11_-_67397371_67397416	0.0663216	PAX1_PAX9	ENST00000376693.2|NUDT8|ENSG00000167799.5|nudix (nucleoside diphosphate linked moiety X)-type motif 8 	ENST00000301490.4|NUDT8|ENSG00000167799.5|nudix (nucleoside diphosphate linked moiety X)-type motif 8
hg19_v2_chr22_-_41940404_41940610	0.0586596	PAX1_PAX9	ENST00000355209.4|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 	ENST00000337566.5|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 	ENST00000396504.2|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 	ENST00000407461.1|POLR3H|ENSG00000100413.12|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)
hg19_v2_chr6_+_34857019_34857117	0.0585138	PAX1_PAX9	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr8_-_23261589_23261753	0.0570231	PAX1_PAX9	ENST00000524168.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000523833.2|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000519243.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000389131.3|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chrX_-_153707545_153707596	0.0516581	PAX1_PAX9	ENST00000357360.4|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr9_+_6716478_6716551	0.0496614	PAX1_PAX9	ENST00000452643.1|RP11-390F4.3|ENSG00000225489.2|RP11-390F4.3
hg19_v2_chr19_-_40791211_40791269	0.0487411	PAX1_PAX9	ENST00000579047.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr2_-_162931052_162931063	0.047072	PAX1_PAX9	ENST00000360534.3|DPP4|ENSG00000197635.5|dipeptidyl-peptidase 4
hg19_v2_chr5_+_133842243_133842269	0.0450672	PAX1_PAX9	ENST00000515627.2|AC005355.2|ENSG00000251169.2|AC005355.2
hg19_v2_chr17_-_7137582_7137637	0.0441659	PAX1_PAX9	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr2_+_234160340_234160360	0.0407298	PAX1_PAX9	ENST00000417017.1|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000392020.4|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000392018.1|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae)
hg19_v2_chr9_+_33795533_33795562	0.037557	PAX1_PAX9	ENST00000379405.3|PRSS3|ENSG00000010438.12|protease, serine, 3
hg19_v2_chr14_+_102196739_102196774	0.037446	PAX1_PAX9	ENST00000556973.1|RP11-796G6.2|ENSG00000258512.1|Uncharacterized protein
hg19_v2_chr22_+_39745930_39746012	0.0370465	PAX1_PAX9	ENST00000318801.4|SYNGR1|ENSG00000100321.10|synaptogyrin 1 	ENST00000216155.7|SYNGR1|ENSG00000100321.10|synaptogyrin 1 	ENST00000406293.3|SYNGR1|ENSG00000100321.10|synaptogyrin 1 	ENST00000328933.5|SYNGR1|ENSG00000100321.10|synaptogyrin 1
hg19_v2_chr17_+_39968926_39969042	0.0347837	PAX1_PAX9	ENST00000585664.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000585922.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000429461.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr3_-_57113281_57113312	0.0329001	PAX1_PAX9	ENST00000468466.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr17_+_15848231_15848231	0.0302251	PAX1_PAX9	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr2_+_234160217_234160335	0.0295639	PAX1_PAX9	ENST00000392017.4|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000347464.5|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000444735.1|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000373525.5|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae) 	ENST00000419681.1|ATG16L1|ENSG00000085978.17|autophagy related 16-like 1 (S. cerevisiae)
hg19_v2_chr7_-_22234381_22234430	0.0279852	PAX1_PAX9	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr2_-_207629997_207630030	0.0250816	PAX1_PAX9	ENST00000454776.2|MDH1B|ENSG00000138400.8|malate dehydrogenase 1B, NAD (soluble)
hg19_v2_chr17_+_76374714_76374759	0.0243478	PAX1_PAX9	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr17_+_37356528_37356547	0.0236485	PAX1_PAX9	ENST00000225430.4|RPL19|ENSG00000108298.5|ribosomal protein L19
hg19_v2_chr17_+_37356586_37356612	0.0231416	PAX1_PAX9	ENST00000579260.1|RPL19|ENSG00000108298.5|ribosomal protein L19 	ENST00000582193.1|RPL19|ENSG00000108298.5|ribosomal protein L19
hg19_v2_chr8_-_101965104_101965119	0.0212979	PAX1_PAX9	ENST00000437293.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr17_-_39968406_39968451	0.0210473	PAX1_PAX9	ENST00000393928.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr2_+_119699864_119699905	0.0188476	PAX1_PAX9	ENST00000541757.1|MARCO|ENSG00000019169.9|macrophage receptor with collagenous structure 	ENST00000412481.1|MARCO|ENSG00000019169.9|macrophage receptor with collagenous structure
hg19_v2_chr9_-_131418944_131419066	0.0165542	PAX1_PAX9	ENST00000419989.1|WDR34|ENSG00000119333.7|WD repeat domain 34 	ENST00000451652.1|WDR34|ENSG00000119333.7|WD repeat domain 34 	ENST00000372715.2|WDR34|ENSG00000119333.7|WD repeat domain 34
hg19_v2_chr5_-_133747589_133747603	0.0159973	PAX1_PAX9	ENST00000458198.2|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr10_-_43904608_43904640	0.0156864	PAX1_PAX9	ENST00000337970.3|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr17_+_37356555_37356580	0.0155933	PAX1_PAX9	ENST00000579374.1|RPL19|ENSG00000108298.5|ribosomal protein L19
hg19_v2_chr19_-_40791302_40791443	0.0153088	PAX1_PAX9	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr17_+_39969183_39969265	0.0145892	PAX1_PAX9	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr11_-_126138808_126138877	0.0144975	PAX1_PAX9	ENST00000332118.6|SRPR|ENSG00000182934.7|signal recognition particle receptor (docking protein) 	ENST00000532259.1|SRPR|ENSG00000182934.7|signal recognition particle receptor (docking protein)
hg19_v2_chr16_+_67197288_67197362	0.0143441	PAX1_PAX9	ENST00000264009.8|HSF4|ENSG00000102878.11|heat shock transcription factor 4 	ENST00000421453.1|HSF4|ENSG00000102878.11|heat shock transcription factor 4
hg19_v2_chr3_+_127771212_127771316	0.0131266	PAX1_PAX9	ENST00000243253.3|SEC61A1|ENSG00000058262.5|Sec61 alpha 1 subunit (S. cerevisiae) 	ENST00000481210.1|SEC61A1|ENSG00000058262.5|Sec61 alpha 1 subunit (S. cerevisiae)
hg19_v2_chr11_+_6947720_6947812	0.0121819	PAX1_PAX9	ENST00000414517.2|ZNF215|ENSG00000149054.10|zinc finger protein 215
hg19_v2_chr8_-_125384927_125384952	0.0117671	PAX1_PAX9	ENST00000297632.6|TMEM65|ENSG00000164983.6|transmembrane protein 65
hg19_v2_chr17_-_39968855_39968880	0.0113683	PAX1_PAX9	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr1_-_213031418_213031449	0.0109763	PAX1_PAX9	ENST00000356684.3|FLVCR1-AS1|ENSG00000198468.3|FLVCR1 antisense RNA 1 (head to head) 	ENST00000426161.1|FLVCR1-AS1|ENSG00000198468.3|FLVCR1 antisense RNA 1 (head to head) 	ENST00000424044.1|FLVCR1-AS1|ENSG00000198468.3|FLVCR1 antisense RNA 1 (head to head)
hg19_v2_chr11_+_6947647_6947698	0.0109178	PAX1_PAX9	ENST00000278319.5|ZNF215|ENSG00000149054.10|zinc finger protein 215
hg19_v2_chr10_-_99393208_99393237	0.0108464	PAX1_PAX9	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr14_+_64854958_64855091	0.00953359	PAX1_PAX9	ENST00000555709.2|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000554739.1|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000554768.1|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 	ENST00000216605.8|MTHFD1|ENSG00000100714.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase
hg19_v2_chr9_-_21142144_21142144	0.00857287	PAX1_PAX9	ENST00000380229.2|IFNW1|ENSG00000177047.5|interferon, omega 1
hg19_v2_chr7_+_36429409_36429420	0.00803243	PAX1_PAX9	ENST00000265748.2|ANLN|ENSG00000011426.6|anillin, actin binding protein
hg19_v2_chr5_-_133747551_133747585	0.00742549	PAX1_PAX9	ENST00000395009.3|CDKN2AIPNL|ENSG00000237190.3|CDKN2A interacting protein N-terminal like
hg19_v2_chr6_-_170893669_170893740	0.00735732	PAX1_PAX9	ENST00000392090.2|PDCD2|ENSG00000071994.6|programmed cell death 2 	ENST00000542896.1|PDCD2|ENSG00000071994.6|programmed cell death 2 	ENST00000453163.2|PDCD2|ENSG00000071994.6|programmed cell death 2 	ENST00000537445.1|PDCD2|ENSG00000071994.6|programmed cell death 2
hg19_v2_chr4_-_163085141_163085187	0.00695679	PAX1_PAX9	ENST00000427802.2|FSTL5|ENSG00000168843.9|follistatin-like 5 	ENST00000306100.5|FSTL5|ENSG00000168843.9|follistatin-like 5
hg19_v2_chr4_+_75230853_75230871	0.0068165	PAX1_PAX9	ENST00000244869.2|EREG|ENSG00000124882.3|epiregulin
hg19_v2_chr11_+_61522844_61522875	0.00655743	PAX1_PAX9	ENST00000265460.5|MYRF|ENSG00000124920.9|myelin regulatory factor
hg19_v2_chr2_-_207630033_207630061	0.00585906	PAX1_PAX9	ENST00000449792.1|MDH1B|ENSG00000138400.8|malate dehydrogenase 1B, NAD (soluble)
hg19_v2_chr9_+_96793076_96793128	0.003971	PAX1_PAX9	ENST00000375360.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chrX_-_132091284_132091372	0.00390432	PAX1_PAX9	ENST00000370833.2|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2
hg19_v2_chr6_+_74104471_74104528	0.0037307	PAX1_PAX9	ENST00000370336.4|DDX43|ENSG00000080007.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
hg19_v2_chr1_+_26758790_26758847	0.00139223	PAX1_PAX9	ENST00000427245.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000525682.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000236342.7|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000526219.1|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000374185.3|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase 	ENST00000360009.2|DHDDS|ENSG00000117682.12|dehydrodolichyl diphosphate synthase
hg19_v2_chr6_+_3118926_3118976	0.000705725	PAX1_PAX9	ENST00000380379.5|BPHL|ENSG00000137274.8|biphenyl hydrolase-like (serine hydrolase)
hg19_v2_chr18_+_39766626_39766668	0.000486079	PAX1_PAX9	ENST00000593234.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585627.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591199.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000586990.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593051.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000593316.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000591381.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000585639.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907 	ENST00000589068.1|LINC00907|ENSG00000267586.2|long intergenic non-protein coding RNA 907
hg19_v2_chr21_-_33104367_33104441	0.000120986	PAX1_PAX9	ENST00000286835.7|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4 	ENST00000399804.1|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4
