hg19_v2_chr8_-_1922789_1922822	0.715858	MSX2	ENST00000521498.1|RP11-439C15.4|ENSG00000253764.1|RP11-439C15.4
hg19_v2_chr7_-_99716914_99716936	0.478414	MSX2	ENST00000431404.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr4_-_171012844_171012850	0.429975	MSX2	ENST00000502392.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase
hg19_v2_chr14_-_88200641_88200643	0.415856	MSX2	ENST00000556168.1|RP11-1152H15.1|ENSG00000258807.1|RP11-1152H15.1
hg19_v2_chr1_-_36916011_36916057	0.395914	MSX2	ENST00000356637.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000354267.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000235532.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr3_-_112127981_112128034	0.39204	MSX2	ENST00000486726.2|RP11-231E6.1|ENSG00000243081.2|RP11-231E6.1
hg19_v2_chr17_-_46716647_46716665	0.389686	MSX2	ENST00000608940.1|RP11-357H14.17|ENSG00000272763.1|RP11-357H14.17
hg19_v2_chr18_+_63273310_63273326	0.366834	MSX2	ENST00000579862.1|RP11-775G23.1|ENSG00000265217.1|RP11-775G23.1
hg19_v2_chr19_+_11485333_11485367	0.333523	MSX2	ENST00000312423.2|SWSAP1|ENSG00000173928.2|SWIM-type zinc finger 7 associated protein 1
hg19_v2_chr1_+_81001398_81001440	0.310179	MSX2	ENST00000418041.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1	ENST00000443104.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1
hg19_v2_chr2_-_8715616_8715650	0.301794	MSX2	ENST00000418358.1|AC011747.3|ENSG00000231435.1|AC011747.3
hg19_v2_chr4_-_19458597_19458623	0.300812	MSX2	ENST00000505347.1|RP11-3J1.1|ENSG00000248238.1|RP11-3J1.1
hg19_v2_chr1_-_232651312_232651312	0.278134	MSX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr17_+_12569472_12569506	0.261971	MSX2	ENST00000343344.4|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr17_+_44679808_44679808	0.240914	MSX2	ENST00000571172.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr7_-_2883928_2883993	0.224242	MSX2	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr17_+_74261277_74261292	0.221087	MSX2	ENST00000327490.6|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr7_-_2883650_2883775	0.220506	MSX2	ENST00000544127.1|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chrX_-_21676442_21676453	0.207093	MSX2	ENST00000379499.2|KLHL34|ENSG00000185915.4|kelch-like family member 34
hg19_v2_chr1_+_27158505_27158520	0.196346	MSX2	ENST00000534643.1|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr16_+_69345243_69345312	0.195882	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chrX_-_15332665_15332693	0.19245	MSX2	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chr1_-_151762943_151763012	0.182057	MSX2	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr3_+_113251143_113251263	0.173274	MSX2	ENST00000264852.4|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1 	ENST00000393830.3|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1
hg19_v2_chr20_+_56964169_56964182	0.172145	MSX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr12_+_64798826_64798936	0.165822	MSX2	ENST00000540203.1|XPOT|ENSG00000184575.7|exportin, tRNA
hg19_v2_chr6_+_25652501_25652632	0.162397	MSX2	ENST00000334979.6|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr20_-_50418947_50418964	0.161705	MSX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr1_-_36916066_36916092	0.156989	MSX2	ENST00000315643.9|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr1_-_68698197_68698214	0.149203	MSX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr17_-_9929581_9929626	0.144788	MSX2	ENST00000437099.2|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000396115.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr17_-_12920907_12920987	0.14341	MSX2	ENST00000609757.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000581499.2|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000580504.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2
hg19_v2_chr10_-_28571015_28571067	0.14186	MSX2	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr10_+_99205894_99205954	0.141735	MSX2	ENST00000370854.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000393760.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000414567.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370846.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr7_-_99717463_99717483	0.137249	MSX2	ENST00000437822.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr7_-_99716940_99716943	0.136287	MSX2	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_-_21377383_21377395	0.1357	MSX2	ENST00000374935.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr7_-_99716952_99717021	0.134578	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_-_8877692_8877732	0.13221	MSX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr1_-_151431674_151431691	0.129318	MSX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr12_+_52695617_52695649	0.127352	MSX2	ENST00000293525.5|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr1_-_151762900_151762910	0.126714	MSX2	ENST00000440583.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr14_-_95236551_95236576	0.126137	MSX2	ENST00000238558.3|GSC|ENSG00000133937.3|goosecoid homeobox
hg19_v2_chr5_-_31532160_31532221	0.125709	MSX2	ENST00000511367.2|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III 	ENST00000513349.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr1_-_36915880_36916004	0.125688	MSX2	ENST00000445843.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr1_+_27158483_27158501	0.12252	MSX2	ENST00000374141.2|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr11_+_33061543_33061585	0.121366	MSX2	ENST00000432887.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000528898.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000531632.2|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1
hg19_v2_chr9_+_124329336_124329406	0.116526	MSX2	ENST00000394340.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000436835.1|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000259371.2|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr11_-_71823796_71823826	0.115889	MSX2	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr10_+_99205959_99205981	0.114104	MSX2	ENST00000352634.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000353979.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370842.2|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000345745.5|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr6_+_25652432_25652485	0.111425	MSX2	ENST00000377961.2|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr1_-_151431647_151431669	0.107269	MSX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr22_-_30960876_30960901	0.107093	MSX2	ENST00000401975.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000428682.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000423299.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr7_-_56174161_56174269	0.106935	MSX2	ENST00000395422.3|CHCHD2|ENSG00000106153.12|coiled-coil-helix-coiled-coil-helix domain containing 2
hg19_v2_chr7_+_99717230_99717321	0.104776	MSX2	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr5_+_140557371_140557371	0.103879	MSX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr5_+_95997885_95997914	0.101388	MSX2	ENST00000511097.2|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr2_-_200335983_200335994	0.0993601	MSX2	ENST00000457245.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr14_+_32798547_32798606	0.0967378	MSX2	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr1_-_94050668_94050724	0.0966019	MSX2	ENST00000539242.1|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr6_-_116833500_116833511	0.0955501	MSX2	ENST00000356128.4|TRAPPC3L|ENSG00000173626.5|trafficking protein particle complex 3-like
hg19_v2_chr10_-_72142345_72142395	0.0951474	MSX2	ENST00000373224.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000446961.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000358141.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000357631.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20
hg19_v2_chr12_+_53662110_53662121	0.0928468	MSX2	ENST00000552462.1|ESPL1|ENSG00000135476.7|extra spindle pole bodies homolog 1 (S. cerevisiae)
hg19_v2_chr3_-_120400960_120401030	0.0926271	MSX2	ENST00000476082.2|HGD|ENSG00000113924.7|homogentisate 1,2-dioxygenase
hg19_v2_chr19_+_17378159_17378275	0.0886527	MSX2	ENST00000598188.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000359435.4|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599474.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599057.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601043.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000447614.2|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr1_+_202317815_202317854	0.0871911	MSX2	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr12_-_120315074_120315097	0.0869568	MSX2	ENST00000261833.7|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21) 	ENST00000392521.2|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21)
hg19_v2_chr10_+_85954377_85954438	0.0865932	MSX2	ENST00000332904.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1 	ENST00000372117.3|CDHR1|ENSG00000148600.10|cadherin-related family member 1
hg19_v2_chr21_-_22175341_22175434	0.0848403	MSX2	ENST00000416768.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000452561.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000419299.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000437238.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320
hg19_v2_chr11_-_71823715_71823792	0.0826756	MSX2	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr1_-_151431909_151431987	0.0812637	MSX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr14_+_32798462_32798539	0.081087	MSX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr12_-_57039739_57039798	0.0809624	MSX2	ENST00000552959.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000551020.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000553007.2|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552919.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552104.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000262030.3|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
hg19_v2_chr7_-_100183742_100183781	0.0809388	MSX2	ENST00000310300.6|LRCH4|ENSG00000077454.11|leucine-rich repeats and calponin homology (CH) domain containing 4
hg19_v2_chr1_+_202317855_202317864	0.0807477	MSX2	ENST00000356764.2|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr20_-_54967187_54967393	0.0784434	MSX2	ENST00000422322.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000371356.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000451915.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000347343.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395911.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395907.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000441357.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000456249.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000420474.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395909.4|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395914.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000312783.6|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395915.3|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395913.3|AURKA|ENSG00000087586.13|aurora kinase A
hg19_v2_chr20_+_49126881_49126936	0.0780749	MSX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr19_+_42817527_42817546	0.0772058	MSX2	ENST00000598766.1|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr19_-_46088068_46088100	0.0771887	MSX2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr17_-_43045439_43045439	0.0767909	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr9_+_74729511_74729525	0.075727	MSX2	ENST00000545168.1|GDA|ENSG00000119125.12|guanine deaminase
hg19_v2_chr2_-_73460334_73460405	0.0723397	MSX2	ENST00000258083.2|PRADC1|ENSG00000135617.3|protease-associated domain containing 1
hg19_v2_chr19_+_17378278_17378311	0.0698836	MSX2	ENST00000596335.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601436.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000595632.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr5_+_95998070_95998179	0.0695279	MSX2	ENST00000421689.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000510756.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000512620.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr11_-_71823266_71823325	0.0681537	MSX2	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr12_-_9102224_9102331	0.067573	MSX2	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr8_+_9413410_9413451	0.0565661	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr12_-_9102549_9102591	0.0561011	MSX2	ENST00000000412.3|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr11_+_17298342_17298378	0.0551796	MSX2	ENST00000530964.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr16_-_29934558_29934641	0.0549167	MSX2	ENST00000568995.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13 	ENST00000566413.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13
hg19_v2_chr6_+_30687978_30688141	0.052542	MSX2	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr3_-_180397256_180397301	0.0516919	MSX2	ENST00000442201.2|CCDC39|ENSG00000145075.7|coiled-coil domain containing 39
hg19_v2_chr5_+_150639360_150639450	0.0512897	MSX2	ENST00000523004.1|GM2A|ENSG00000196743.4|GM2 ganglioside activator
hg19_v2_chr17_+_74261413_74261452	0.0501048	MSX2	ENST00000587913.1|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr16_+_58783542_58783581	0.0499989	MSX2	ENST00000500117.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2	ENST00000565722.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2
hg19_v2_chr1_+_151735431_151735446	0.0488491	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chrX_-_48931648_48931730	0.0447415	MSX2	ENST00000376386.3|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2 	ENST00000376390.4|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2
hg19_v2_chr12_+_54718904_54718936	0.043091	MSX2	ENST00000262061.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549043.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552218.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000553231.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552362.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000455864.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000416254.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549116.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000551779.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr14_-_23504432_23504448	0.0413004	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr20_+_56964253_56964369	0.0409242	MSX2	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr11_+_67250490_67250527	0.0405092	MSX2	ENST00000528641.2|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein 	ENST00000279146.3|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein
hg19_v2_chr12_+_53662073_53662105	0.0402551	MSX2	ENST00000553219.1|ESPL1|ENSG00000135476.7|extra spindle pole bodies homolog 1 (S. cerevisiae) 	ENST00000257934.4|ESPL1|ENSG00000135476.7|extra spindle pole bodies homolog 1 (S. cerevisiae)
hg19_v2_chr1_-_68698222_68698266	0.0385938	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr6_-_31830655_31830683	0.0382984	MSX2	ENST00000375631.4|NEU1|ENSG00000204386.6|sialidase 1 (lysosomal sialidase)
hg19_v2_chr18_-_48346298_48346391	0.0372068	MSX2	ENST00000398439.3|MRO|ENSG00000134042.8|maestro
hg19_v2_chr2_-_98280383_98280570	0.0329322	MSX2	ENST00000289228.5|ACTR1B|ENSG00000115073.6|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
hg19_v2_chr15_-_98417780_98417780	0.0316039	MSX2	ENST00000503874.3|LINC00923|ENSG00000251209.3|long intergenic non-protein coding RNA 923
hg19_v2_chr4_-_88449771_88449925	0.0315312	MSX2	ENST00000535835.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr4_-_109684120_109684217	0.0315044	MSX2	ENST00000512646.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000411864.2|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000296486.3|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000510706.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase
hg19_v2_chr4_-_69434245_69434245	0.0313684	MSX2	ENST00000317746.2|UGT2B17|ENSG00000197888.2|UDP glucuronosyltransferase 2 family, polypeptide B17
hg19_v2_chr6_+_34204642_34204664	0.0295668	MSX2	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr17_-_48785216_48785291	0.0293757	MSX2	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr7_+_100210133_100210214	0.0288591	MSX2	ENST00000393950.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000424091.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr19_-_10121144_10121155	0.0276938	MSX2	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr19_+_4007644_4007699	0.0266333	MSX2	ENST00000262971.2|PIAS4|ENSG00000105229.2|protein inhibitor of activated STAT, 4
hg19_v2_chr18_+_39535239_39535383	0.0251139	MSX2	ENST00000585528.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr15_+_41245160_41245347	0.0229143	MSX2	ENST00000444189.2|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli) 	ENST00000446533.3|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli)
hg19_v2_chr20_-_50419055_50419066	0.0225597	MSX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr11_+_108535752_108535841	0.0204435	MSX2	ENST00000322536.3|DDX10|ENSG00000178105.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
hg19_v2_chr22_+_17956618_17956637	0.0200833	MSX2	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr13_-_103389159_103389159	0.0188874	MSX2	ENST00000322527.2|CCDC168|ENSG00000175820.2|coiled-coil domain containing 168
hg19_v2_chr9_+_34646651_34646689	0.0187913	MSX2	ENST00000378842.3|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase
hg19_v2_chr15_-_37393406_37393528	0.0177715	MSX2	ENST00000338564.5|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000558313.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000340545.5|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr20_+_30467600_30467641	0.0172078	MSX2	ENST00000375934.4|TTLL9|ENSG00000131044.12|tubulin tyrosine ligase-like family, member 9 	ENST00000375922.4|TTLL9|ENSG00000131044.12|tubulin tyrosine ligase-like family, member 9
hg19_v2_chr5_+_95997918_95998007	0.0170283	MSX2	ENST00000395812.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000395813.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000359176.4|CAST|ENSG00000153113.19|calpastatin 	ENST00000325674.7|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr7_+_48211048_48211063	0.0157073	MSX2	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr7_+_100209979_100210053	0.0136233	MSX2	ENST00000493970.1|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000379527.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr17_-_80250663_80250695	0.0132259	MSX2	ENST00000581489.1|RP13-516M14.4|ENSG00000265692.1|RP13-516M14.4
hg19_v2_chr5_+_140797296_140797427	0.0130693	MSX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr1_+_244515930_244515950	0.012844	MSX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr18_+_39535152_39535232	0.0126446	MSX2	ENST00000262039.4|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000398870.3|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000586545.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr6_-_167040731_167040745	0.0113025	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr10_-_15762124_15762149	0.00846367	MSX2	ENST00000378076.3|ITGA8|ENSG00000077943.7|integrin, alpha 8
hg19_v2_chr11_-_124981475_124981659	0.00751602	MSX2	ENST00000532156.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000532407.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000279968.4|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527766.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529583.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000524373.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527271.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000526175.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529609.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000533273.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000531909.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529530.1|TMEM218|ENSG00000150433.5|transmembrane protein 218
hg19_v2_chr14_-_23504337_23504369	0.00656195	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr7_+_100183927_100183957	0.00522225	MSX2	ENST00000241071.6|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000360609.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr17_+_42264556_42264649	0.0048707	MSX2	ENST00000319511.6|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000589785.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000592825.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2 	ENST00000589184.1|TMUB2|ENSG00000168591.11|transmembrane and ubiquitin-like domain containing 2
hg19_v2_chr19_+_46236509_46236509	0.00388924	MSX2	ENST00000457052.2|AC074212.3|ENSG00000237452.2|Uncharacterized protein
hg19_v2_chrX_+_77154935_77155012	0.00377113	MSX2	ENST00000481445.1|COX7B|ENSG00000131174.4|cytochrome c oxidase subunit VIIb
hg19_v2_chrX_+_70752945_70752973	0.00166635	MSX2	ENST00000373701.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr1_-_23694794_23694879	0.000846045	MSX2	ENST00000374608.3|ZNF436|ENSG00000125945.10|zinc finger protein 436
hg19_v2_chr10_-_99447024_99447080	0.000587484	MSX2	ENST00000370626.3|AVPI1|ENSG00000119986.6|arginine vasopressin-induced 1
