hg19_v2_chr11_+_115498761_115498783	0.663386	MSX1	ENST00000424313.2|AP000997.1|ENSG00000255599.1|AP000997.1
hg19_v2_chr7_+_99425633_99425739	0.446573	MSX1	ENST00000354829.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000421837.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000417625.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000342499.4|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000444905.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000415413.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000312017.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000222382.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43
hg19_v2_chr2_+_7073174_7073194	0.362727	MSX1	ENST00000416587.1|RNF144A|ENSG00000151692.10|ring finger protein 144A
hg19_v2_chr14_-_92247032_92247051	0.342066	MSX1	ENST00000556661.1|CATSPERB|ENSG00000133962.3|catsper channel auxiliary subunit beta 	ENST00000553676.1|CATSPERB|ENSG00000133962.3|catsper channel auxiliary subunit beta 	ENST00000554560.1|CATSPERB|ENSG00000133962.3|catsper channel auxiliary subunit beta
hg19_v2_chr5_+_121465234_121465263	0.341994	MSX1	ENST00000504912.1|ZNF474|ENSG00000164185.4|zinc finger protein 474 	ENST00000505843.1|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr7_-_105332084_105332111	0.302391	MSX1	ENST00000472195.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr8_-_25281747_25281779	0.298832	MSX1	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr4_-_100140331_100140409	0.25193	MSX1	ENST00000407820.2|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V) 	ENST00000394897.1|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V) 	ENST00000508558.1|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V) 	ENST00000394899.2|ADH6|ENSG00000172955.13|alcohol dehydrogenase 6 (class V)
hg19_v2_chr19_+_3762645_3762690	0.24942	MSX1	ENST00000330133.4|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chrX_+_23928500_23928500	0.248266	MSX1	ENST00000435707.1|CXorf58|ENSG00000165182.6|chromosome X open reading frame 58
hg19_v2_chr13_-_38172863_38172981	0.238461	MSX1	ENST00000541481.1|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379743.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379742.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379749.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000541179.1|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor 	ENST00000379747.4|POSTN|ENSG00000133110.10|periostin, osteoblast specific factor
hg19_v2_chr4_+_169013666_169013697	0.236311	MSX1	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr1_-_20503917_20503917	0.232441	MSX1	ENST00000429261.2|PLA2G2C|ENSG00000187980.6|phospholipase A2, group IIC
hg19_v2_chr2_+_175352114_175352240	0.218073	MSX1	ENST00000444196.1|AC010894.3|ENSG00000226853.2|AC010894.3	ENST00000417038.1|AC010894.3|ENSG00000226853.2|AC010894.3	ENST00000606406.1|AC010894.3|ENSG00000226853.2|AC010894.3
hg19_v2_chr16_+_53412368_53412387	0.214378	MSX1	ENST00000565189.1|RP11-44F14.2|ENSG00000261804.1|RP11-44F14.2
hg19_v2_chr17_-_47786375_47786400	0.203864	MSX1	ENST00000511657.1|SLC35B1|ENSG00000121073.9|solute carrier family 35, member B1
hg19_v2_chr5_-_119669160_119669197	0.200028	MSX1	ENST00000514240.1|CTC-552D5.1|ENSG00000251293.1|CTC-552D5.1
hg19_v2_chr22_-_32767017_32767063	0.192726	MSX1	ENST00000400234.1|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr15_+_77713222_77713271	0.191442	MSX1	ENST00000558176.1|HMG20A|ENSG00000140382.10|high mobility group 20A
hg19_v2_chr21_+_33671264_33671283	0.185299	MSX1	ENST00000339944.4|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr13_-_81801115_81801122	0.183169	MSX1	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr6_+_134758827_134758863	0.178861	MSX1	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr12_+_27623565_27623565	0.178385	MSX1	ENST00000535986.1|SMCO2|ENSG00000165935.5|single-pass membrane protein with coiled-coil domains 2
hg19_v2_chr6_+_131958436_131958525	0.174404	MSX1	ENST00000357639.3|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000543135.1|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000427148.2|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000358229.5|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3
hg19_v2_chr12_+_48592134_48592170	0.173726	MSX1	ENST00000595310.1|DKFZP779L1853|ENSG00000269514.1|DKFZP779L1853
hg19_v2_chr14_+_52327350_52327371	0.172435	MSX1	ENST00000555472.1|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2 	ENST00000556766.1|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2
hg19_v2_chr6_-_31830655_31830683	0.171249	MSX1	ENST00000375631.4|NEU1|ENSG00000204386.6|sialidase 1 (lysosomal sialidase)
hg19_v2_chr10_-_61899124_61899158	0.164621	MSX1	ENST00000373815.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr5_-_75919253_75919269	0.159619	MSX1	ENST00000296641.4|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr14_+_20215587_20215587	0.150755	MSX1	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr3_+_187957646_187957656	0.145147	MSX1	ENST00000457242.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr14_-_101295407_101295537	0.14389	MSX1	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr21_+_43619796_43619811	0.142747	MSX1	ENST00000398457.2|ABCG1|ENSG00000160179.14|ATP-binding cassette, sub-family G (WHITE), member 1
hg19_v2_chr8_+_97597148_97597173	0.141784	MSX1	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr1_-_209792111_209792143	0.136912	MSX1	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr5_+_121647386_121647464	0.132294	MSX1	ENST00000542191.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000506272.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000508681.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000509154.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr22_-_32766972_32766996	0.128009	MSX1	ENST00000382084.4|RFPL3S|ENSG00000205853.6|RFPL3 antisense 	ENST00000382086.2|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr3_+_108308559_108308584	0.121238	MSX1	ENST00000486815.1|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr13_-_47471155_47471214	0.120621	MSX1	ENST00000543956.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled 	ENST00000542664.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
hg19_v2_chr19_+_18303992_18304039	0.119267	MSX1	ENST00000599612.2|MPV17L2|ENSG00000254858.5|MPV17 mitochondrial membrane protein-like 2
hg19_v2_chr20_+_56964169_56964182	0.112791	MSX1	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr17_-_39150385_39150417	0.107254	MSX1	ENST00000391586.1|KRTAP3-3|ENSG00000212899.1|keratin associated protein 3-3
hg19_v2_chr19_+_3762703_3762719	0.107199	MSX1	ENST00000589174.1|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr19_+_29456034_29456041	0.105339	MSX1	ENST00000589921.1|LINC00906|ENSG00000267339.1|long intergenic non-protein coding RNA 906
hg19_v2_chr10_+_17270214_17270258	0.102012	MSX1	ENST00000544301.1|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr13_-_45048386_45048415	0.101032	MSX1	ENST00000472477.1|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chrX_+_73164149_73164166	0.10006	MSX1	ENST00000602938.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602294.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602920.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602737.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602772.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding)
hg19_v2_chr2_-_31361543_31361592	0.0984447	MSX1	ENST00000349752.5|GALNT14|ENSG00000158089.10|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
hg19_v2_chr1_+_44514040_44514064	0.0981815	MSX1	ENST00000431800.1|RP5-1198O20.4|ENSG00000230615.2|RP5-1198O20.4	ENST00000437643.1|RP5-1198O20.4|ENSG00000230615.2|RP5-1198O20.4
hg19_v2_chr12_-_10978957_10978957	0.0976683	MSX1	ENST00000240619.2|TAS2R10|ENSG00000121318.2|taste receptor, type 2, member 10
hg19_v2_chr12_+_54422142_54422239	0.0959914	MSX1	ENST00000243108.4|HOXC6|ENSG00000197757.7|homeobox C6
hg19_v2_chr10_+_135050908_135050908	0.0926267	MSX1	ENST00000325980.9|VENTX|ENSG00000151650.7|VENT homeobox
hg19_v2_chr20_+_5731083_5731100	0.0924504	MSX1	ENST00000445603.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000442185.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr12_-_52604607_52604639	0.0916523	MSX1	ENST00000551894.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80 	ENST00000553017.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80
hg19_v2_chr14_+_68086515_68086595	0.0914083	MSX1	ENST00000261783.3|ARG2|ENSG00000081181.3|arginase 2
hg19_v2_chr7_-_55620433_55620545	0.0913802	MSX1	ENST00000418904.1|VOPP1|ENSG00000154978.8|vesicular, overexpressed in cancer, prosurvival protein 1
hg19_v2_chr9_-_128246769_128246780	0.0909003	MSX1	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr20_+_56964253_56964369	0.090514	MSX1	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr10_-_29923893_29923907	0.0898915	MSX1	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr7_+_107220899_107220915	0.0891542	MSX1	ENST00000379117.2|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29 	ENST00000473124.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr6_+_147981838_147981873	0.0885532	MSX1	ENST00000427015.1|RP11-307P5.1|ENSG00000227681.1|RP11-307P5.1	ENST00000432506.1|RP11-307P5.1|ENSG00000227681.1|RP11-307P5.1
hg19_v2_chr4_+_146539415_146539415	0.0847139	MSX1	ENST00000281317.5|MMAA|ENSG00000151611.9|methylmalonic aciduria (cobalamin deficiency) cblA type
hg19_v2_chr13_-_52733670_52733760	0.0825937	MSX1	ENST00000550841.1|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr21_+_33671160_33671172	0.0823053	MSX1	ENST00000303645.5|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr7_-_56101826_56101878	0.0820389	MSX1	ENST00000421626.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr19_-_53758094_53758147	0.0816852	MSX1	ENST00000601828.1|ZNF677|ENSG00000197928.6|zinc finger protein 677 	ENST00000598513.1|ZNF677|ENSG00000197928.6|zinc finger protein 677 	ENST00000599012.1|ZNF677|ENSG00000197928.6|zinc finger protein 677 	ENST00000333952.4|ZNF677|ENSG00000197928.6|zinc finger protein 677 	ENST00000598806.1|ZNF677|ENSG00000197928.6|zinc finger protein 677
hg19_v2_chr6_-_32095968_32096032	0.0809018	MSX1	ENST00000375203.3|ATF6B|ENSG00000213676.6|activating transcription factor 6 beta 	ENST00000375201.4|ATF6B|ENSG00000213676.6|activating transcription factor 6 beta
hg19_v2_chr14_+_55493920_55494013	0.0806345	MSX1	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr7_+_16793160_16793160	0.0805621	MSX1	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr14_+_55494323_55494345	0.078094	MSX1	ENST00000339298.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr1_-_149908217_149908248	0.0775096	MSX1	ENST00000369140.3|MTMR11|ENSG00000014914.15|myotubularin related protein 11
hg19_v2_chr2_+_169312350_169312372	0.0759493	MSX1	ENST00000305747.6|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr10_+_135204338_135204338	0.0664397	MSX1	ENST00000468317.2|RP11-108K14.8|ENSG00000254536.1|Mitochondrial GTPase 1
hg19_v2_chr9_+_133539981_133539981	0.0639519	MSX1	ENST00000253008.2|PRDM12|ENSG00000130711.3|PR domain containing 12
hg19_v2_chr11_+_327171_327415	0.0634924	MSX1	ENST00000534483.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12	ENST00000524824.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12	ENST00000531076.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12
hg19_v2_chr3_-_180397256_180397301	0.0606622	MSX1	ENST00000442201.2|CCDC39|ENSG00000145075.7|coiled-coil domain containing 39
hg19_v2_chr2_+_158114051_158114110	0.059456	MSX1	ENST00000259056.4|GALNT5|ENSG00000136542.4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
hg19_v2_chr1_+_46805832_46805874	0.058317	MSX1	ENST00000474844.1|NSUN4|ENSG00000117481.6|NOP2/Sun domain family, member 4
hg19_v2_chr8_+_30244580_30244749	0.0575038	MSX1	ENST00000523115.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing 	ENST00000519647.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing
hg19_v2_chr6_-_32908765_32908786	0.057314	MSX1	ENST00000416244.2|HLA-DMB|ENSG00000242574.4|major histocompatibility complex, class II, DM beta
hg19_v2_chr14_+_55595762_55595782	0.0568191	MSX1	ENST00000254301.9|LGALS3|ENSG00000131981.11|lectin, galactoside-binding, soluble, 3
hg19_v2_chr6_-_32557610_32557630	0.0559405	MSX1	ENST00000360004.5|HLA-DRB1|ENSG00000196126.6|major histocompatibility complex, class II, DR beta 1
hg19_v2_chr15_+_67813406_67813492	0.0559135	MSX1	ENST00000342683.4|C15orf61|ENSG00000189227.4|chromosome 15 open reading frame 61
hg19_v2_chr4_-_164534657_164534701	0.0537828	MSX1	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr1_-_114429997_114430077	0.0532431	MSX1	ENST00000471267.1|BCL2L15|ENSG00000188761.7|BCL2-like 15 	ENST00000393320.3|BCL2L15|ENSG00000188761.7|BCL2-like 15
hg19_v2_chr14_-_64194745_64194799	0.0508297	MSX1	ENST00000247225.6|SGPP1|ENSG00000126821.7|sphingosine-1-phosphate phosphatase 1
hg19_v2_chr10_+_13141585_13141603	0.0505962	MSX1	ENST00000378764.2|OPTN|ENSG00000123240.12|optineurin
hg19_v2_chr5_+_67586465_67586534	0.0501041	MSX1	ENST00000336483.5|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr5_-_75919217_75919250	0.048202	MSX1	ENST00000504899.1|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr7_+_7811992_7811992	0.0478931	MSX1	ENST00000406829.1|RPA3-AS1|ENSG00000219545.5|RPA3 antisense RNA 1
hg19_v2_chr12_-_11150474_11150474	0.047723	MSX1	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chr6_-_32784687_32784839	0.0461889	MSX1	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr15_-_42500351_42500523	0.0453661	MSX1	ENST00000348544.4|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae) 	ENST00000318006.5|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae)
hg19_v2_chr14_+_52327109_52327132	0.0452136	MSX1	ENST00000335281.4|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2
hg19_v2_chr14_+_77582905_77582916	0.0448529	MSX1	ENST00000557408.1|TMEM63C|ENSG00000165548.6|transmembrane protein 63C
hg19_v2_chr2_+_175199674_175199688	0.0441109	MSX1	ENST00000394967.2|SP9|ENSG00000217236.1|Sp9 transcription factor
hg19_v2_chr3_-_123512688_123512717	0.0426261	MSX1	ENST00000475616.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_-_123339418_123339473	0.0421427	MSX1	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr6_+_28092338_28092412	0.0416458	MSX1	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr10_-_101380121_101380235	0.0413409	MSX1	ENST00000370495.4|SLC25A28|ENSG00000155287.6|solute carrier family 25 (mitochondrial iron transporter), member 28
hg19_v2_chr13_+_50570019_50570028	0.0409989	MSX1	ENST00000442421.1|TRIM13|ENSG00000204977.5|tripartite motif containing 13
hg19_v2_chr6_-_109776901_109776994	0.0396884	MSX1	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr1_-_160492994_160493057	0.0387622	MSX1	ENST00000368055.1|SLAMF6|ENSG00000162739.9|SLAM family member 6 	ENST00000368057.3|SLAMF6|ENSG00000162739.9|SLAM family member 6 	ENST00000368059.3|SLAMF6|ENSG00000162739.9|SLAM family member 6
hg19_v2_chr19_-_7812446_7812473	0.0382484	MSX1	ENST00000394173.4|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000301357.8|CD209|ENSG00000090659.13|CD209 molecule
hg19_v2_chr10_+_13142225_13142246	0.0372943	MSX1	ENST00000378747.3|OPTN|ENSG00000123240.12|optineurin
hg19_v2_chr10_-_43892668_43892794	0.036447	MSX1	ENST00000544000.1|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr12_+_122688090_122688284	0.0359867	MSX1	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr8_+_28748765_28748833	0.0358233	MSX1	ENST00000355231.5|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr7_-_20256965_20257034	0.035552	MSX1	ENST00000400331.5|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1 	ENST00000332878.4|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1
hg19_v2_chr11_-_85376121_85376181	0.0352765	MSX1	ENST00000527447.1|CREBZF|ENSG00000137504.9|CREB/ATF bZIP transcription factor
hg19_v2_chr3_-_47555167_47555251	0.0338546	MSX1	ENST00000296149.4|ELP6|ENSG00000163832.11|elongator acetyltransferase complex subunit 6
hg19_v2_chr15_-_77712477_77712499	0.0336887	MSX1	ENST00000560626.2|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr1_-_19426149_19426221	0.0328559	MSX1	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr15_+_51669513_51669571	0.0325673	MSX1	ENST00000558426.1|GLDN|ENSG00000186417.9|gliomedin
hg19_v2_chr11_+_92085262_92085262	0.0324652	MSX1	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr14_+_55595960_55595978	0.0314477	MSX1	ENST00000554715.1|LGALS3|ENSG00000131981.11|lectin, galactoside-binding, soluble, 3
hg19_v2_chr2_-_158345462_158345480	0.0309606	MSX1	ENST00000439355.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein 	ENST00000540637.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein
hg19_v2_chr20_+_5731027_5731055	0.0303399	MSX1	ENST00000378979.4|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000303142.6|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr18_+_29598335_29598428	0.0302391	MSX1	ENST00000217740.3|RNF125|ENSG00000101695.4|ring finger protein 125, E3 ubiquitin protein ligase
hg19_v2_chr2_-_109605663_109605828	0.0294481	MSX1	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
hg19_v2_chr9_+_115913222_115913266	0.0289789	MSX1	ENST00000259392.3|SLC31A2|ENSG00000136867.6|solute carrier family 31 (copper transporter), member 2
hg19_v2_chr22_+_41697520_41697613	0.027232	MSX1	ENST00000352645.4|ZC3H7B|ENSG00000100403.10|zinc finger CCCH-type containing 7B
hg19_v2_chr19_-_7812397_7812426	0.0259718	MSX1	ENST00000593660.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000354397.6|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000593821.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000602261.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000315591.8|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000394161.5|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000204801.8|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000601256.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000601951.1|CD209|ENSG00000090659.13|CD209 molecule 	ENST00000315599.7|CD209|ENSG00000090659.13|CD209 molecule
hg19_v2_chr2_-_88927092_88927099	0.0244061	MSX1	ENST00000303236.3|EIF2AK3|ENSG00000172071.7|eukaryotic translation initiation factor 2-alpha kinase 3
hg19_v2_chr6_+_131894284_131894378	0.0237049	MSX1	ENST00000368087.3|ARG1|ENSG00000118520.9|arginase 1 	ENST00000356962.2|ARG1|ENSG00000118520.9|arginase 1
hg19_v2_chr16_-_66584059_66584315	0.0235084	MSX1	ENST00000417693.3|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000544898.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000569718.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000527284.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000299697.7|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000451102.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr18_-_47721447_47721474	0.023237	MSX1	ENST00000285039.7|MYO5B|ENSG00000167306.14|myosin VB
hg19_v2_chr11_+_22694123_22694154	0.023052	MSX1	ENST00000534801.1|GAS2|ENSG00000148935.6|growth arrest-specific 2
hg19_v2_chr21_+_30502806_30502989	0.0218643	MSX1	ENST00000399928.1|MAP3K7CL|ENSG00000156265.11|MAP3K7 C-terminal like 	ENST00000399926.1|MAP3K7CL|ENSG00000156265.11|MAP3K7 C-terminal like
hg19_v2_chr15_+_77712993_77713081	0.020988	MSX1	ENST00000336216.4|HMG20A|ENSG00000140382.10|high mobility group 20A 	ENST00000381714.3|HMG20A|ENSG00000140382.10|high mobility group 20A 	ENST00000558651.1|HMG20A|ENSG00000140382.10|high mobility group 20A
hg19_v2_chr1_+_84630645_84630652	0.02016	MSX1	ENST00000394839.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr20_+_34129770_34129879	0.019849	MSX1	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr17_-_48785216_48785291	0.0197269	MSX1	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr1_-_109935819_109935979	0.0194325	MSX1	ENST00000538502.1|SORT1|ENSG00000134243.7|sortilin 1
hg19_v2_chr7_+_141408153_141408153	0.0185145	MSX1	ENST00000397541.2|WEE2|ENSG00000214102.3|WEE1 homolog 2 (S. pombe)
hg19_v2_chr8_-_99057742_99057818	0.0182362	MSX1	ENST00000521291.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000396070.2|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000523172.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000287038.3|RPL30|ENSG00000156482.6|ribosomal protein L30
hg19_v2_chr14_-_75389925_75389969	0.0180001	MSX1	ENST00000556776.1|RPS6KL1|ENSG00000198208.7|ribosomal protein S6 kinase-like 1
hg19_v2_chr5_+_82767487_82767510	0.0168513	MSX1	ENST00000343200.5|VCAN|ENSG00000038427.11|versican 	ENST00000342785.4|VCAN|ENSG00000038427.11|versican
hg19_v2_chr5_+_102594403_102594445	0.0167814	MSX1	ENST00000319933.2|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr9_+_12695702_12695720	0.0163987	MSX1	ENST00000381136.2|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1
hg19_v2_chr5_+_82767583_82767744	0.0161639	MSX1	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr1_+_8021954_8022038	0.0161617	MSX1	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr4_-_186696425_186696452	0.0155788	MSX1	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr17_+_55162453_55162594	0.0150736	MSX1	ENST00000575322.1|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000337714.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000314126.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1
hg19_v2_chr5_-_137475071_137475122	0.0143952	MSX1	ENST00000265191.2|NME5|ENSG00000112981.3|NME/NM23 family member 5
hg19_v2_chr15_-_77712429_77712473	0.0130815	MSX1	ENST00000564328.1|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1 	ENST00000558305.1|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr17_-_8113542_8113572	0.0124533	MSX1	ENST00000578549.1|AURKB|ENSG00000178999.8|aurora kinase B 	ENST00000535053.1|AURKB|ENSG00000178999.8|aurora kinase B 	ENST00000582368.1|AURKB|ENSG00000178999.8|aurora kinase B
hg19_v2_chr1_-_72566613_72566642	0.0121542	MSX1	ENST00000306821.3|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr16_-_66583701_66583783	0.0114926	MSX1	ENST00000527800.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000525974.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000563369.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr9_-_23779367_23779378	0.0110681	MSX1	ENST00000440102.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr5_+_175490540_175490540	0.0101468	MSX1	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr18_-_70532906_70532934	0.00977523	MSX1	ENST00000299430.2|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1 	ENST00000397929.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr9_-_86593238_86593367	0.00909108	MSX1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr14_+_50291993_50291993	0.00894804	MSX1	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr5_+_121465207_121465216	0.0085063	MSX1	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr11_+_45825616_45825645	0.00849112	MSX1	ENST00000442528.2|SLC35C1|ENSG00000181830.7|solute carrier family 35 (GDP-fucose transporter), member C1 	ENST00000456334.1|SLC35C1|ENSG00000181830.7|solute carrier family 35 (GDP-fucose transporter), member C1 	ENST00000526817.1|SLC35C1|ENSG00000181830.7|solute carrier family 35 (GDP-fucose transporter), member C1
hg19_v2_chr14_-_73997901_73997916	0.00765861	MSX1	ENST00000557603.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4 	ENST00000556455.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4
hg19_v2_chr4_+_119810134_119810192	0.00744025	MSX1	ENST00000434046.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr7_-_36634181_36634262	0.00711937	MSX1	ENST00000538464.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr1_+_160160283_160160292	0.00650656	MSX1	ENST00000368079.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr5_+_82767284_82767310	0.00584195	MSX1	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr6_-_109777128_109777203	0.00500529	MSX1	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr5_+_140762268_140762467	0.00361408	MSX1	ENST00000518325.1|PCDHGA7|ENSG00000253537.1|protocadherin gamma subfamily A, 7
hg19_v2_chr21_+_39668478_39668496	0.00335075	MSX1	ENST00000398927.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr5_-_147162078_147162106	0.00278582	MSX1	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr15_-_99548775_99548792	0.0027069	MSX1	ENST00000378919.6|PGPEP1L|ENSG00000183571.9|pyroglutamyl-peptidase I-like
hg19_v2_chr8_+_117963190_117963224	0.00210683	MSX1	ENST00000427715.2|SLC30A8|ENSG00000164756.8|solute carrier family 30 (zinc transporter), member 8
hg19_v2_chr18_-_3874247_3874262	0.00186502	MSX1	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr6_+_28249332_28249391	0.0017363	MSX1	ENST00000259883.3|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr8_+_24241969_24241999	0.000358547	MSX1	ENST00000522298.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr11_+_7506584_7506619	0.000106013	MSX1	ENST00000530135.1|OLFML1|ENSG00000183801.3|olfactomedin-like 1
