hg19_v2_chr17_+_61151306_61151320	0.362575	LHX3	ENST00000580068.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000580466.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr11_-_63376013_63376053	0.319606	LHX3	ENST00000540943.1|PLA2G16|ENSG00000176485.6|phospholipase A2, group XVI
hg19_v2_chr14_+_29241910_29242013	0.275414	LHX3	ENST00000399387.4|C14orf23|ENSG00000186960.6|chromosome 14 open reading frame 23 	ENST00000552957.1|C14orf23|ENSG00000186960.6|chromosome 14 open reading frame 23 	ENST00000548213.1|C14orf23|ENSG00000186960.6|chromosome 14 open reading frame 23
hg19_v2_chr14_-_57197224_57197273	0.26937	LHX3	ENST00000554597.1|RP11-1085N6.3|ENSG00000259133.1|Uncharacterized protein  	ENST00000556696.1|RP11-1085N6.3|ENSG00000259133.1|Uncharacterized protein
hg19_v2_chr12_-_118628315_118628348	0.263049	LHX3	ENST00000540561.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr4_-_120243545_120243562	0.251406	LHX3	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr8_-_66750978_66750987	0.247494	LHX3	ENST00000523253.1|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr2_+_29001711_29001866	0.244643	LHX3	ENST00000418910.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr6_-_138833630_138833677	0.141967	LHX3	ENST00000533765.1|NHSL1|ENSG00000135540.7|NHS-like 1
hg19_v2_chr18_+_61616510_61616549	0.131975	LHX3	ENST00000408945.3|HMSD|ENSG00000221887.4|histocompatibility (minor) serpin domain containing
hg19_v2_chr15_+_75970672_75970672	0.116045	LHX3	ENST00000435356.1|AC105020.1|ENSG00000203392.2|Uncharacterized protein; cDNA FLJ12988 fis, clone NT2RP3000080
hg19_v2_chr4_+_3344141_3344178	0.115199	LHX3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr22_+_23487513_23487707	0.0967742	LHX3	ENST00000263116.2|RAB36|ENSG00000100228.8|RAB36, member RAS oncogene family 	ENST00000341989.4|RAB36|ENSG00000100228.8|RAB36, member RAS oncogene family
hg19_v2_chr14_-_21566731_21566836	0.0964166	LHX3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr6_-_47445214_47445308	0.0946245	LHX3	ENST00000604014.1|RP11-385F7.1|ENSG00000270761.1|RP11-385F7.1
hg19_v2_chr9_-_21482312_21482312	0.0941145	LHX3	ENST00000448696.3|IFNE|ENSG00000184995.6|interferon, epsilon
hg19_v2_chr17_-_4938712_4938733	0.0927322	LHX3	ENST00000254853.5|SLC52A1|ENSG00000132517.10|solute carrier family 52 (riboflavin transporter), member 1 	ENST00000424747.1|SLC52A1|ENSG00000132517.10|solute carrier family 52 (riboflavin transporter), member 1
hg19_v2_chr16_+_89334512_89334512	0.0924433	LHX3	ENST00000602042.1|AC137932.1|ENSG00000268218.1|AC137932.1
hg19_v2_chr9_-_128246769_128246780	0.0888001	LHX3	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr6_+_26104104_26104169	0.0848792	LHX3	ENST00000377803.2|HIST1H4C|ENSG00000197061.3|histone cluster 1, H4c
hg19_v2_chr8_-_25281747_25281779	0.0830037	LHX3	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr10_-_90611566_90611608	0.0816647	LHX3	ENST00000371930.4|ANKRD22|ENSG00000152766.5|ankyrin repeat domain 22
hg19_v2_chr11_-_58378759_58378759	0.0803623	LHX3	ENST00000601906.1|AP001350.1|ENSG00000269570.1|Uncharacterized protein
hg19_v2_chr13_+_24144796_24144809	0.0755307	LHX3	ENST00000403372.2|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr19_+_48949087_48949116	0.0736122	LHX3	ENST00000598711.1|GRWD1|ENSG00000105447.8|glutamate-rich WD repeat containing 1
hg19_v2_chr19_+_11457232_11457257	0.0729463	LHX3	ENST00000587531.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159
hg19_v2_chr14_-_45252031_45252036	0.0700581	LHX3	ENST00000556405.1|RP11-398E10.1|ENSG00000258998.1|RP11-398E10.1
hg19_v2_chr16_-_28937027_28937073	0.0687727	LHX3	ENST00000358201.4|RABEP2|ENSG00000177548.8|rabaptin, RAB GTPase binding effector protein 2
hg19_v2_chr17_-_8263538_8263538	0.0679443	LHX3	ENST00000535173.1|AC135178.1|ENSG00000198150.2|HCG1985372; Uncharacterized protein; cDNA FLJ37541 fis, clone BRCAN2026340
hg19_v2_chr3_+_186692745_186692824	0.0663418	LHX3	ENST00000438590.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr5_+_59783941_59784066	0.0646736	LHX3	ENST00000506884.1|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding) 	ENST00000504876.2|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v2_chr4_+_74301880_74301964	0.0620521	LHX3	ENST00000395792.2|AFP|ENSG00000081051.3|alpha-fetoprotein 	ENST00000226359.2|AFP|ENSG00000081051.3|alpha-fetoprotein
hg19_v2_chrX_+_107288239_107288259	0.061736	LHX3	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr12_-_52761262_52761267	0.0612622	LHX3	ENST00000257901.3|KRT85|ENSG00000135443.4|keratin 85
hg19_v2_chr19_+_48949030_48949086	0.0595335	LHX3	ENST00000253237.5|GRWD1|ENSG00000105447.8|glutamate-rich WD repeat containing 1
hg19_v2_chrX_+_107288197_107288212	0.0583175	LHX3	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr7_+_134671234_134671324	0.0574413	LHX3	ENST00000436302.2|AGBL3|ENSG00000146856.10|ATP/GTP binding protein-like 3 	ENST00000359383.3|AGBL3|ENSG00000146856.10|ATP/GTP binding protein-like 3 	ENST00000458078.1|AGBL3|ENSG00000146856.10|ATP/GTP binding protein-like 3 	ENST00000435976.2|AGBL3|ENSG00000146856.10|ATP/GTP binding protein-like 3 	ENST00000455283.2|AGBL3|ENSG00000146856.10|ATP/GTP binding protein-like 3
hg19_v2_chr8_+_119294456_119294486	0.055616	LHX3	ENST00000366457.2|AC023590.1|ENSG00000225885.2|Uncharacterized protein
hg19_v2_chr14_-_101295407_101295537	0.055291	LHX3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr9_+_125133315_125133359	0.0552469	LHX3	ENST00000223423.4|PTGS1|ENSG00000095303.10|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 	ENST00000362012.2|PTGS1|ENSG00000095303.10|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr19_+_11457175_11457224	0.0551652	LHX3	ENST00000458408.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000586451.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000588592.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159
hg19_v2_chr7_-_84122033_84122049	0.054007	LHX3	ENST00000424555.1|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr14_+_55494323_55494345	0.0521305	LHX3	ENST00000339298.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr17_-_39623681_39623681	0.0520654	LHX3	ENST00000225899.3|KRT32|ENSG00000108759.3|keratin 32
hg19_v2_chrX_-_13835147_13835224	0.0507999	LHX3	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr1_+_244214577_244214593	0.0502658	LHX3	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr7_+_30185496_30185513	0.0499537	LHX3	ENST00000455738.1|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr9_-_100000957_100001043	0.0496947	LHX3	ENST00000366109.2|RP11-498P14.5|ENSG00000203279.3|RP11-498P14.5	ENST00000607322.1|RP11-498P14.5|ENSG00000203279.3|RP11-498P14.5
hg19_v2_chr1_-_48866517_48866534	0.0493169	LHX3	ENST00000371841.1|SPATA6|ENSG00000132122.7|spermatogenesis associated 6
hg19_v2_chr6_+_130339710_130339745	0.0490648	LHX3	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr17_-_72772462_72772511	0.0489352	LHX3	ENST00000582870.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000581136.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000357814.3|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000579218.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583476.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000580301.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583757.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000582524.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative)
hg19_v2_chr12_-_118628350_118628371	0.0488119	LHX3	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr7_+_30185406_30185417	0.048412	LHX3	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr10_+_695888_695998	0.0462198	LHX3	ENST00000441152.2|PRR26|ENSG00000180525.9|proline rich 26
hg19_v2_chr11_-_559377_559393	0.0455488	LHX3	ENST00000486629.1|C11orf35|ENSG00000185522.4|chromosome 11 open reading frame 35
hg19_v2_chr9_+_125132803_125132835	0.0455081	LHX3	ENST00000540753.1|PTGS1|ENSG00000095303.10|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr3_-_20053741_20053822	0.0439495	LHX3	ENST00000389050.4|PP2D1|ENSG00000183977.9|protein phosphatase 2C-like domain containing 1
hg19_v2_chr16_+_15489629_15489644	0.0434977	LHX3	ENST00000396385.3|MPV17L|ENSG00000156968.8|MPV17 mitochondrial membrane protein-like
hg19_v2_chr14_+_55493920_55494013	0.0415922	LHX3	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr18_+_616711_616720	0.0379842	LHX3	ENST00000579494.1|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr1_-_231005310_231005347	0.0371785	LHX3	ENST00000470540.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr15_+_64680003_64680063	0.0361466	LHX3	ENST00000261884.3|TRIP4|ENSG00000103671.5|thyroid hormone receptor interactor 4
hg19_v2_chr2_+_26624775_26624809	0.0359913	LHX3	ENST00000288710.2|DRC1|ENSG00000157856.6|dynein regulatory complex subunit 1 homolog (Chlamydomonas)
hg19_v2_chr1_+_15668240_15668263	0.0357729	LHX3	ENST00000444385.1|FHAD1|ENSG00000142621.15|forkhead-associated (FHA) phosphopeptide binding domain 1
hg19_v2_chr19_-_51920952_51921057	0.0349418	LHX3	ENST00000356298.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000339313.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000529627.1|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000439889.2|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000353836.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000432469.2|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10
hg19_v2_chr14_+_20215587_20215587	0.0331776	LHX3	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr2_-_99871570_99871745	0.031825	LHX3	ENST00000333017.2|LYG2|ENSG00000185674.5|lysozyme G-like 2 	ENST00000409679.1|LYG2|ENSG00000185674.5|lysozyme G-like 2 	ENST00000423306.1|LYG2|ENSG00000185674.5|lysozyme G-like 2
hg19_v2_chr1_-_94147385_94147407	0.0315471	LHX3	ENST00000260502.6|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr15_+_65843130_65843157	0.0313016	LHX3	ENST00000569894.1|PTPLAD1|ENSG00000074696.8|protein tyrosine phosphatase-like A domain containing 1
hg19_v2_chr1_-_24126023_24126049	0.0309407	LHX3	ENST00000429356.1|GALE|ENSG00000117308.10|UDP-galactose-4-epimerase
hg19_v2_chr12_+_49740700_49740821	0.0308176	LHX3	ENST00000549441.2|DNAJC22|ENSG00000178401.10|DnaJ (Hsp40) homolog, subfamily C, member 22 	ENST00000395069.3|DNAJC22|ENSG00000178401.10|DnaJ (Hsp40) homolog, subfamily C, member 22
hg19_v2_chr17_-_72772425_72772445	0.0303713	LHX3	ENST00000578822.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative)
hg19_v2_chr7_-_4901625_4901633	0.0302239	LHX3	ENST00000404991.1|PAPOLB|ENSG00000218823.1|poly(A) polymerase beta (testis specific)
hg19_v2_chr18_+_616672_616681	0.030124	LHX3	ENST00000338387.7|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr10_+_104263743_104263836	0.0297505	LHX3	ENST00000369902.3|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000369899.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000423559.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila)
hg19_v2_chr10_+_18549645_18549698	0.0292146	LHX3	ENST00000396576.2|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr5_+_140529630_140529683	0.0287871	LHX3	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr2_+_135596106_135596137	0.0279343	LHX3	ENST00000356140.5|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr2_+_54785485_54785538	0.0278186	LHX3	ENST00000333896.5|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr10_+_696000_696035	0.0277878	LHX3	ENST00000381489.5|PRR26|ENSG00000180525.9|proline rich 26
hg19_v2_chr16_+_15489603_15489627	0.0277421	LHX3	ENST00000568766.1|RP11-1021N1.1|ENSG00000261130.1|Uncharacterized protein  	ENST00000287594.7|MPV17L|ENSG00000156968.8|MPV17 mitochondrial membrane protein-like
hg19_v2_chr15_-_75748143_75748183	0.0260106	LHX3	ENST00000568431.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568309.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568190.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000570115.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000564778.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr14_+_21566980_21567097	0.0248602	LHX3	ENST00000418511.2|TMEM253|ENSG00000232070.4|transmembrane protein 253 	ENST00000554329.2|TMEM253|ENSG00000232070.4|transmembrane protein 253
hg19_v2_chr17_-_27418537_27418537	0.0217341	LHX3	ENST00000408971.2|TIAF1|ENSG00000221995.4|TGFB1-induced anti-apoptotic factor 1
hg19_v2_chr11_-_128894053_128894123	0.0216994	LHX3	ENST00000392657.3|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chrM_+_10053_10073	0.0213977	LHX3	ENST00000361227.2|MT-ND3|ENSG00000198840.2|mitochondrially encoded NADH dehydrogenase 3
hg19_v2_chr13_-_81801115_81801122	0.0200997	LHX3	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr14_-_21567009_21567173	0.0200117	LHX3	ENST00000556174.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000554478.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000553980.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000421093.2|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr7_-_122840015_122840040	0.0199862	LHX3	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr7_-_140482926_140482957	0.0197977	LHX3	ENST00000496384.2|BRAF|ENSG00000157764.8|v-raf murine sarcoma viral oncogene homolog B
hg19_v2_chr12_-_86650077_86650095	0.0186311	LHX3	ENST00000552808.2|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENST00000547225.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr8_-_57123815_57123867	0.0182891	LHX3	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr16_+_28565230_28565257	0.0180356	LHX3	ENST00000317058.3|CCDC101|ENSG00000176476.4|coiled-coil domain containing 101
hg19_v2_chr12_-_86650045_86650076	0.0179782	LHX3	ENST00000604798.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr4_-_185275104_185275133	0.0178725	LHX3	ENST00000317596.3|RP11-290F5.2|ENSG00000180712.3|RP11-290F5.2
hg19_v2_chr10_-_27529486_27529497	0.0172977	LHX3	ENST00000375888.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr5_+_169011033_169011108	0.0156141	LHX3	ENST00000513795.1|SPDL1|ENSG00000040275.12|spindle apparatus coiled-coil protein 1
hg19_v2_chr19_+_50016610_50016658	0.01507	LHX3	ENST00000596975.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr17_+_35851570_35851667	0.0146303	LHX3	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr3_-_48130707_48130789	0.0137533	LHX3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr15_-_99057551_99057611	0.0136003	LHX3	ENST00000558256.1|FAM169B|ENSG00000185087.7|family with sequence similarity 169, member B
hg19_v2_chr4_-_41884620_41884663	0.0134121	LHX3	ENST00000504870.1|LINC00682|ENSG00000245870.2|long intergenic non-protein coding RNA 682
hg19_v2_chr5_-_1882858_1883003	0.0123829	LHX3	ENST00000511126.1|IRX4|ENSG00000113430.5|iroquois homeobox 4 	ENST00000231357.2|IRX4|ENSG00000113430.5|iroquois homeobox 4
hg19_v2_chrX_+_9431324_9431371	0.0108663	LHX3	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr4_-_23891658_23891690	0.0102769	LHX3	ENST00000507380.1|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chrX_-_110655306_110655330	0.0102072	LHX3	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr14_+_101295638_101295752	0.0101697	LHX3	ENST00000523671.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr1_-_24126051_24126062	0.00974242	LHX3	ENST00000445705.1|GALE|ENSG00000117308.10|UDP-galactose-4-epimerase
hg19_v2_chr19_+_50016411_50016531	0.00939989	LHX3	ENST00000426395.3|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha 	ENST00000600273.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha 	ENST00000599988.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr6_-_49712123_49712134	0.00885062	LHX3	ENST00000263045.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr6_-_9933500_9933500	0.00840627	LHX3	ENST00000492169.1|OFCC1|ENSG00000181355.16|orofacial cleft 1 candidate 1
hg19_v2_chr4_-_36245561_36245601	0.00822786	LHX3	ENST00000506189.1|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr4_+_71384257_71384295	0.00771542	LHX3	ENST00000339336.4|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr16_-_28634874_28634907	0.00745975	LHX3	ENST00000395609.1|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 	ENST00000350842.4|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
hg19_v2_chr3_-_47517302_47517451	0.0073738	LHX3	ENST00000441517.2|SCAP|ENSG00000114650.14|SREBF chaperone 	ENST00000545718.1|SCAP|ENSG00000114650.14|SREBF chaperone
hg19_v2_chr3_+_148415571_148415705	0.00691878	LHX3	ENST00000497524.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000349243.3|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000542281.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000418473.2|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000404754.2|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr10_-_128359074_128359083	0.00594431	LHX3	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr4_+_41937131_41937211	0.00588914	LHX3	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr2_-_145278475_145278621	0.00582971	LHX3	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr1_-_160924589_160924607	0.00526599	LHX3	ENST00000368029.3|ITLN2|ENSG00000158764.6|intelectin 2
hg19_v2_chr11_-_67980744_67980882	0.00474565	LHX3	ENST00000401547.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000453170.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000304363.4|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr5_+_166711804_166711843	0.00437881	LHX3	ENST00000518659.1|TENM2|ENSG00000145934.11|teneurin transmembrane protein 2 	ENST00000545108.1|TENM2|ENSG00000145934.11|teneurin transmembrane protein 2
hg19_v2_chr9_+_125133467_125133518	0.00420297	LHX3	ENST00000426608.1|PTGS1|ENSG00000095303.10|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr12_+_59989918_59989965	0.00313738	LHX3	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chrX_+_108779004_108779015	0.00254374	LHX3	ENST00000218004.1|NXT2|ENSG00000101888.7|nuclear transport factor 2-like export factor 2
hg19_v2_chr12_+_40787194_40787197	0.00244727	LHX3	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr1_+_168250194_168250278	0.00230608	LHX3	ENST00000367821.3|TBX19|ENSG00000143178.8|T-box 19
hg19_v2_chr19_-_43969796_43969813	0.0021667	LHX3	ENST00000244333.3|LYPD3|ENSG00000124466.8|LY6/PLAUR domain containing 3
hg19_v2_chr2_-_99279928_99279942	0.00183096	LHX3	ENST00000414521.2|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr6_-_49712072_49712088	0.00167191	LHX3	ENST00000423399.2|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr9_-_116065551_116065551	0.00159404	LHX3	ENST00000297894.5|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr10_-_74283694_74283749	0.00156483	LHX3	ENST00000398763.4|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000418483.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000489666.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1
hg19_v2_chr2_-_207078154_207078169	0.00112623	LHX3	ENST00000447845.1|GPR1|ENSG00000183671.8|G protein-coupled receptor 1
hg19_v2_chr1_+_81771806_81771876	0.00066187	LHX3	ENST00000370721.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370727.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370725.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370723.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370728.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370730.1|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr8_-_30670384_30670394	0.000201922	LHX3	ENST00000221138.4|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme 	ENST00000518243.1|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme
