hg19_v2_chr1_+_95616933_95616933	0.543944	HOXD9	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr7_-_35013217_35013217	0.382972	HOXD9	ENST00000446375.1|DPY19L1|ENSG00000173852.9|dpy-19-like 1 (C. elegans)
hg19_v2_chr1_+_219347203_219347233	0.302754	HOXD9	ENST00000366927.3|LYPLAL1|ENSG00000143353.7|lysophospholipase-like 1
hg19_v2_chr8_-_90993869_90993920	0.292748	HOXD9	ENST00000517772.1|NBN|ENSG00000104320.9|nibrin
hg19_v2_chr12_-_91546926_91546972	0.288647	HOXD9	ENST00000550758.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr6_-_18249971_18250012	0.287234	HOXD9	ENST00000507591.1|DEK|ENSG00000124795.10|DEK oncogene
hg19_v2_chr1_+_16083098_16083119	0.267026	HOXD9	ENST00000496928.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000508310.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr15_+_66797627_66797684	0.263068	HOXD9	ENST00000565627.1|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein 	ENST00000564179.1|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein
hg19_v2_chr2_-_55647057_55647082	0.242803	HOXD9	ENST00000436346.1|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr3_+_182511266_182511308	0.242536	HOXD9	ENST00000323116.5|ATP11B|ENSG00000058063.11|ATPase, class VI, type 11B 	ENST00000493826.1|ATP11B|ENSG00000058063.11|ATPase, class VI, type 11B
hg19_v2_chr14_+_57671888_57671888	0.236708	HOXD9	ENST00000391612.1|AL391152.1|ENSG00000212928.1|AL391152.1
hg19_v2_chr15_+_66797455_66797483	0.22699	HOXD9	ENST00000446801.2|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein
hg19_v2_chr15_+_49913175_49913178	0.22405	HOXD9	ENST00000403028.3|DTWD1|ENSG00000104047.10|DTW domain containing 1
hg19_v2_chr1_+_45140400_45140427	0.22029	HOXD9	ENST00000453711.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr1_-_241799232_241799232	0.215567	HOXD9	ENST00000366553.1|CHML|ENSG00000203668.1|choroideremia-like (Rab escort protein 2)
hg19_v2_chr15_+_49715449_49715464	0.211103	HOXD9	ENST00000560979.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr3_-_182703688_182703741	0.210863	HOXD9	ENST00000466812.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000487822.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000460412.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000469954.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr20_+_5987890_5987904	0.209269	HOXD9	ENST00000378868.4|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr2_-_191115229_191115258	0.208564	HOXD9	ENST00000409820.2|HIBCH|ENSG00000198130.10|3-hydroxyisobutyryl-CoA hydrolase 	ENST00000410045.1|HIBCH|ENSG00000198130.10|3-hydroxyisobutyryl-CoA hydrolase
hg19_v2_chr2_+_143635067_143635211	0.201432	HOXD9	ENST00000264170.4|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr12_-_90049878_90049890	0.2002	HOXD9	ENST00000359142.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr10_-_115614127_115614176	0.196057	HOXD9	ENST00000369305.1|DCLRE1A|ENSG00000198924.3|DNA cross-link repair 1A
hg19_v2_chr12_+_41136144_41136158	0.193036	HOXD9	ENST00000548005.1|CNTN1|ENSG00000018236.10|contactin 1 	ENST00000552248.1|CNTN1|ENSG00000018236.10|contactin 1
hg19_v2_chr2_-_170430277_170430361	0.192071	HOXD9	ENST00000438035.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000453929.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr13_-_44735393_44735393	0.19054	HOXD9	ENST00000400419.1|SMIM2|ENSG00000139656.5|small integral membrane protein 2
hg19_v2_chr13_+_111748183_111748203	0.18511	HOXD9	ENST00000422994.1|LINC00368|ENSG00000225870.1|long intergenic non-protein coding RNA 368
hg19_v2_chr14_+_45605127_45605155	0.184672	HOXD9	ENST00000556036.1|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M 	ENST00000267430.5|FANCM|ENSG00000187790.6|Fanconi anemia, complementation group M
hg19_v2_chr13_+_33160553_33160564	0.169945	HOXD9	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr12_-_90049828_90049847	0.168645	HOXD9	ENST00000261173.2|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1 	ENST00000348959.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr19_-_19739321_19739366	0.166487	HOXD9	ENST00000588461.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2
hg19_v2_chr3_-_27498235_27498278	0.166344	HOXD9	ENST00000295736.5|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000428386.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000428179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr8_-_25281747_25281779	0.164642	HOXD9	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr2_-_55646957_55647027	0.157634	HOXD9	ENST00000263630.8|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr14_-_31856397_31856489	0.157343	HOXD9	ENST00000538864.2|HEATR5A|ENSG00000129493.10|HEAT repeat containing 5A 	ENST00000550366.1|HEATR5A|ENSG00000129493.10|HEAT repeat containing 5A
hg19_v2_chr18_-_57027194_57027194	0.156133	HOXD9	ENST00000251047.5|LMAN1|ENSG00000074695.5|lectin, mannose-binding, 1
hg19_v2_chr2_+_145780725_145780735	0.154282	HOXD9	ENST00000451478.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr2_+_161993465_161993481	0.151071	HOXD9	ENST00000457476.1|TANK|ENSG00000136560.9|TRAF family member-associated NFKB activator
hg19_v2_chr1_+_240177627_240177649	0.149754	HOXD9	ENST00000447095.1|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr8_+_52730143_52730143	0.149156	HOXD9	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr6_+_18387570_18387588	0.142353	HOXD9	ENST00000259939.3|RNF144B|ENSG00000137393.8|ring finger protein 144B
hg19_v2_chr12_-_8765446_8765468	0.139957	HOXD9	ENST00000537228.1|AICDA|ENSG00000111732.6|activation-induced cytidine deaminase 	ENST00000229335.6|AICDA|ENSG00000111732.6|activation-induced cytidine deaminase
hg19_v2_chr4_+_74606223_74606293	0.139416	HOXD9	ENST00000307407.3|IL8|ENSG00000169429.6|interleukin 8 	ENST00000401931.1|IL8|ENSG00000169429.6|interleukin 8
hg19_v2_chr5_-_96518907_96518997	0.139176	HOXD9	ENST00000508447.1|RIOK2|ENSG00000058729.6|RIO kinase 2 	ENST00000283109.3|RIOK2|ENSG00000058729.6|RIO kinase 2
hg19_v2_chr2_+_145780739_145780759	0.138581	HOXD9	ENST00000597173.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602108.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000420472.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chrX_+_123097014_123097033	0.137836	HOXD9	ENST00000394478.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr14_-_24733444_24733470	0.13723	HOXD9	ENST00000560478.1|TGM1|ENSG00000092295.7|transglutaminase 1 	ENST00000560443.1|TGM1|ENSG00000092295.7|transglutaminase 1
hg19_v2_chr7_-_92777606_92777723	0.134956	HOXD9	ENST00000437805.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000446959.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000439952.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000414791.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000446033.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000411955.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000318238.4|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like
hg19_v2_chr14_+_62164340_62164443	0.129684	HOXD9	ENST00000557538.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 	ENST00000539097.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
hg19_v2_chr1_+_81771806_81771876	0.12781	HOXD9	ENST00000370721.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370727.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370725.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370723.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370728.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370730.1|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr19_-_53466095_53466164	0.127716	HOXD9	ENST00000391786.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000434371.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000357666.4|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000438970.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000270457.4|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000535506.1|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000444460.2|ZNF816|ENSG00000180257.8|zinc finger protein 816 	ENST00000457013.2|ZNF816|ENSG00000180257.8|zinc finger protein 816
hg19_v2_chr4_-_144826682_144826716	0.126824	HOXD9	ENST00000358615.4|GYPE|ENSG00000197465.9|glycophorin E (MNS blood group) 	ENST00000437468.2|GYPE|ENSG00000197465.9|glycophorin E (MNS blood group)
hg19_v2_chr4_-_164534657_164534701	0.126407	HOXD9	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr1_+_104615595_104615645	0.126199	HOXD9	ENST00000418362.1|RP11-364B6.1|ENSG00000215869.3|RP11-364B6.1
hg19_v2_chr1_+_212475148_212475207	0.124302	HOXD9	ENST00000537030.3|PPP2R5A|ENSG00000066027.7|protein phosphatase 2, regulatory subunit B', alpha
hg19_v2_chr1_+_45140360_45140399	0.122894	HOXD9	ENST00000418644.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000458657.2|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000441519.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000535358.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000445071.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr2_-_228244013_228244027	0.122608	HOXD9	ENST00000304568.3|TM4SF20|ENSG00000168955.3|transmembrane 4 L six family member 20
hg19_v2_chr2_-_170430366_170430390	0.121463	HOXD9	ENST00000453153.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000445210.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chrY_+_14958970_14958970	0.119447	HOXD9	ENST00000453031.1|USP9Y|ENSG00000114374.8|ubiquitin specific peptidase 9, Y-linked
hg19_v2_chr4_-_39640513_39640529	0.114005	HOXD9	ENST00000511809.1|SMIM14|ENSG00000163683.7|small integral membrane protein 14 	ENST00000505729.1|SMIM14|ENSG00000163683.7|small integral membrane protein 14
hg19_v2_chr7_+_6713376_6713424	0.113366	HOXD9	ENST00000399484.3|AC073343.1|ENSG00000198580.6|Uncharacterized protein  	ENST00000544825.1|AC073343.1|ENSG00000198580.6|Uncharacterized protein  	ENST00000401847.1|AC073343.1|ENSG00000198580.6|Uncharacterized protein
hg19_v2_chr5_+_135496675_135496725	0.111312	HOXD9	ENST00000507637.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr10_-_94301107_94301111	0.110063	HOXD9	ENST00000436178.1|IDE|ENSG00000119912.11|insulin-degrading enzyme
hg19_v2_chr14_+_65878650_65878661	0.109563	HOXD9	ENST00000555559.1|FUT8|ENSG00000033170.12|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)
hg19_v2_chr1_-_238108575_238108575	0.108889	HOXD9	ENST00000604646.1|MTRNR2L11|ENSG00000270188.1|MT-RNR2-like 11 (pseudogene)
hg19_v2_chr4_-_36245561_36245601	0.108371	HOXD9	ENST00000506189.1|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr2_+_234627424_234627444	0.107648	HOXD9	ENST00000373409.3|UGT1A4|ENSG00000244474.1|UDP glucuronosyltransferase 1 family, polypeptide A4
hg19_v2_chr6_-_10115007_10115007	0.106028	HOXD9	ENST00000485268.1|OFCC1|ENSG00000181355.16|orofacial cleft 1 candidate 1
hg19_v2_chr7_-_5998714_5998714	0.105046	HOXD9	ENST00000539903.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr9_-_123812542_123812560	0.104792	HOXD9	ENST00000223642.1|C5|ENSG00000106804.6|complement component 5
hg19_v2_chr1_-_100643765_100643829	0.104114	HOXD9	ENST00000370137.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000370138.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000342895.3|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39
hg19_v2_chr17_-_54893250_54893278	0.103373	HOXD9	ENST00000397862.2|C17orf67|ENSG00000214226.4|chromosome 17 open reading frame 67
hg19_v2_chr4_-_120225600_120225600	0.103222	HOXD9	ENST00000399075.4|C4orf3|ENSG00000164096.10|chromosome 4 open reading frame 3
hg19_v2_chr2_+_145780767_145780811	0.10202	HOXD9	ENST00000599358.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596278.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596747.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000608652.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000609705.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000608432.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596970.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602041.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000601578.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596034.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000414195.2|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000594837.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr6_+_63921351_63921386	0.101574	HOXD9	ENST00000370659.1|FKBP1C|ENSG00000198225.4|FK506 binding protein 1C
hg19_v2_chr2_+_143635222_143635240	0.101204	HOXD9	ENST00000375773.2|KYNU|ENSG00000115919.10|kynureninase 	ENST00000409512.1|KYNU|ENSG00000115919.10|kynureninase 	ENST00000410015.2|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr12_-_15104040_15104114	0.101161	HOXD9	ENST00000541644.1|ARHGDIB|ENSG00000111348.4|Rho GDP dissociation inhibitor (GDI) beta 	ENST00000545895.1|ARHGDIB|ENSG00000111348.4|Rho GDP dissociation inhibitor (GDI) beta
hg19_v2_chr11_-_8986474_8986558	0.100234	HOXD9	ENST00000525069.1|TMEM9B|ENSG00000175348.6|TMEM9 domain family, member B
hg19_v2_chr7_+_120629653_120629833	0.0992115	HOXD9	ENST00000450913.2|CPED1|ENSG00000106034.13|cadherin-like and PC-esterase domain containing 1 	ENST00000340646.5|CPED1|ENSG00000106034.13|cadherin-like and PC-esterase domain containing 1
hg19_v2_chr7_-_130353553_130353598	0.0987637	HOXD9	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr14_-_38028689_38028726	0.0985839	HOXD9	ENST00000553425.1|RP11-356O9.2|ENSG00000259087.1|RP11-356O9.2
hg19_v2_chr7_+_117864708_117864798	0.0984425	HOXD9	ENST00000357099.4|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7 	ENST00000265224.4|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7 	ENST00000486422.1|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7 	ENST00000417525.1|ANKRD7|ENSG00000106013.8|ankyrin repeat domain 7
hg19_v2_chr15_+_57998923_57998934	0.0979214	HOXD9	ENST00000380557.4|POLR2M|ENSG00000255529.3|polymerase (RNA) II (DNA directed) polypeptide M
hg19_v2_chr5_+_68860949_68860949	0.097625	HOXD9	ENST00000507595.1|GTF2H2C|ENSG00000183474.11|general transcription factor IIH, polypeptide 2C
hg19_v2_chr2_+_161993412_161993453	0.0975554	HOXD9	ENST00000259075.2|TANK|ENSG00000136560.9|TRAF family member-associated NFKB activator 	ENST00000432002.1|TANK|ENSG00000136560.9|TRAF family member-associated NFKB activator
hg19_v2_chr7_+_77469439_77469497	0.0960363	HOXD9	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr2_+_210444748_210444770	0.0953025	HOXD9	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr1_+_78383813_78383829	0.0948128	HOXD9	ENST00000342754.5|NEXN|ENSG00000162614.14|nexilin (F actin binding protein)
hg19_v2_chr6_+_131894284_131894378	0.0947093	HOXD9	ENST00000368087.3|ARG1|ENSG00000118520.9|arginase 1 	ENST00000356962.2|ARG1|ENSG00000118520.9|arginase 1
hg19_v2_chr1_-_236046872_236046882	0.0927797	HOXD9	ENST00000536965.1|LYST|ENSG00000143669.9|lysosomal trafficking regulator
hg19_v2_chr19_+_52800410_52800454	0.0922859	HOXD9	ENST00000595962.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000598016.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000334564.7|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000490272.1|ZNF480|ENSG00000198464.9|zinc finger protein 480
hg19_v2_chr2_-_231989808_231989832	0.0921076	HOXD9	ENST00000258400.3|HTR2B|ENSG00000135914.5|5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled
hg19_v2_chrX_-_72434628_72434722	0.0904021	HOXD9	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr6_+_24775153_24775242	0.0888862	HOXD9	ENST00000356509.3|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor 	ENST00000230056.3|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor
hg19_v2_chr17_+_60447579_60447579	0.0863857	HOXD9	ENST00000450662.2|EFCAB3|ENSG00000172421.3|EF-hand calcium binding domain 3
hg19_v2_chr10_+_104613980_104613989	0.0856337	HOXD9	ENST00000339834.5|C10orf32|ENSG00000166275.11|chromosome 10 open reading frame 32
hg19_v2_chr11_-_104905840_104905977	0.0845824	HOXD9	ENST00000526568.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000393136.4|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000531166.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000534497.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000527979.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000446369.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000353247.5|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000528974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000533400.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525825.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000436863.3|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase
hg19_v2_chr1_+_16083123_16083144	0.0829268	HOXD9	ENST00000510393.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000430076.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr13_+_51483814_51483935	0.0819095	HOXD9	ENST00000336617.3|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B 	ENST00000422660.1|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B
hg19_v2_chr17_+_61151306_61151320	0.0816441	HOXD9	ENST00000580068.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000580466.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr4_-_84035868_84035897	0.0798969	HOXD9	ENST00000426923.2|PLAC8|ENSG00000145287.6|placenta-specific 8 	ENST00000509973.1|PLAC8|ENSG00000145287.6|placenta-specific 8
hg19_v2_chr15_-_54025300_54025380	0.0787688	HOXD9	ENST00000559418.1|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr14_+_20215587_20215587	0.0787092	HOXD9	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr2_+_114647504_114647557	0.0772276	HOXD9	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr2_+_234668894_234668934	0.0769676	HOXD9	ENST00000305208.5|UGT1A8|ENSG00000242366.2|UDP glucuronosyltransferase 1 family, polypeptide A1 	ENST00000608383.1|UGT1A1|ENSG00000241635.3|UDP glucuronosyltransferase 1 family, polypeptide A8 	ENST00000360418.3|UGT1A1|ENSG00000241635.3|UDP glucuronosyltransferase 1 family, polypeptide A8
hg19_v2_chr8_-_117886955_117887105	0.0766832	HOXD9	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr8_+_107738343_107738413	0.0761978	HOXD9	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr5_+_112043186_112043225	0.0752164	HOXD9	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr14_-_68000442_68000456	0.0743257	HOXD9	ENST00000554278.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr17_+_58018269_58018269	0.074182	HOXD9	ENST00000591035.1|RP11-178C3.1|ENSG00000267318.1|Uncharacterized protein
hg19_v2_chr12_-_7245152_7245203	0.0737148	HOXD9	ENST00000542220.2|C1R|ENSG00000159403.11|complement component 1, r subcomponent
hg19_v2_chr11_-_46639436_46639466	0.0733915	HOXD9	ENST00000532281.1|HARBI1|ENSG00000180423.4|harbinger transposase derived 1
hg19_v2_chr2_+_145425573_145425654	0.0719964	HOXD9	ENST00000600064.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597670.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000414256.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000599187.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000451774.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000599072.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596589.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597893.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr12_+_9144626_9144666	0.0716991	HOXD9	ENST00000543895.1|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr8_+_86089619_86089653	0.0711661	HOXD9	ENST00000256117.5|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding 	ENST00000416274.2|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr4_+_25915822_25915893	0.0690166	HOXD9	ENST00000506197.2|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr10_+_5406935_5406972	0.0683615	HOXD9	ENST00000380433.3|UCN3|ENSG00000178473.5|urocortin 3
hg19_v2_chr14_-_81425828_81425857	0.0669432	HOXD9	ENST00000555529.1|CEP128|ENSG00000100629.12|centrosomal protein 128kDa 	ENST00000556042.1|CEP128|ENSG00000100629.12|centrosomal protein 128kDa 	ENST00000556981.1|CEP128|ENSG00000100629.12|centrosomal protein 128kDa
hg19_v2_chr11_-_102401469_102401488	0.0665543	HOXD9	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chrX_+_12993336_12993363	0.065804	HOXD9	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr4_-_76944621_76944671	0.0638708	HOXD9	ENST00000306602.1|CXCL10|ENSG00000169245.4|chemokine (C-X-C motif) ligand 10
hg19_v2_chrX_-_77150985_77151090	0.0627125	HOXD9	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr5_-_65018834_65018863	0.0626316	HOXD9	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr11_+_112047087_112047123	0.0625615	HOXD9	ENST00000526088.1|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2 	ENST00000532593.1|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2 	ENST00000531169.1|BCO2|ENSG00000197580.7|beta-carotene oxygenase 2
hg19_v2_chr15_-_45493289_45493373	0.0618725	HOXD9	ENST00000561278.1|SHF|ENSG00000138606.15|Src homology 2 domain containing F 	ENST00000290894.8|SHF|ENSG00000138606.15|Src homology 2 domain containing F
hg19_v2_chr14_+_62462541_62462541	0.0614586	HOXD9	ENST00000430451.2|SYT16|ENSG00000139973.11|synaptotagmin XVI
hg19_v2_chr5_-_78808617_78808653	0.0613371	HOXD9	ENST00000282260.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila) 	ENST00000508576.1|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila) 	ENST00000535690.1|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chrY_+_15815447_15815447	0.0600078	HOXD9	ENST00000284856.3|TMSB4Y|ENSG00000154620.5|thymosin beta 4, Y-linked
hg19_v2_chrX_+_118602363_118602397	0.0596394	HOXD9	ENST00000317881.8|SLC25A5|ENSG00000005022.5|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5
hg19_v2_chr5_-_111093167_111093252	0.0590994	HOXD9	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr10_-_8095412_8095449	0.0586764	HOXD9	ENST00000458727.1|RP11-379F12.3|ENSG00000243350.1|RP11-379F12.3	ENST00000355358.1|GATA3-AS1|ENSG00000197308.4|GATA3 antisense RNA 1
hg19_v2_chr2_+_54342574_54342641	0.0576738	HOXD9	ENST00000303536.4|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type 	ENST00000394666.3|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr7_+_90012986_90013035	0.0576182	HOXD9	ENST00000416322.1|CLDN12|ENSG00000157224.11|claudin 12
hg19_v2_chr3_-_100712292_100712338	0.0567221	HOXD9	ENST00000495063.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein 	ENST00000530539.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein
hg19_v2_chr6_+_130339710_130339745	0.0558775	HOXD9	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr8_+_101349823_101349862	0.0550692	HOXD9	ENST00000519566.1|KB-1991G8.1|ENSG00000253217.1|KB-1991G8.1
hg19_v2_chr2_-_158182105_158182171	0.0548117	HOXD9	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr14_+_39583427_39583542	0.0543659	HOXD9	ENST00000308317.6|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000396249.2|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000250379.8|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000534684.2|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000527381.1|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2
hg19_v2_chr3_+_107318157_107318172	0.0542106	HOXD9	ENST00000406780.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr3_+_107364683_107364736	0.0540926	HOXD9	ENST00000413213.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr17_+_57233087_57233146	0.0530573	HOXD9	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr2_-_225434538_225434545	0.0519397	HOXD9	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr14_-_36645674_36645739	0.0519009	HOXD9	ENST00000556013.2|PTCSC3|ENSG00000259104.2|papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding)
hg19_v2_chr2_-_136288113_136288301	0.0510126	HOXD9	ENST00000401392.1|ZRANB3|ENSG00000121988.13|zinc finger, RAN-binding domain containing 3
hg19_v2_chr4_+_186990298_186990342	0.0509095	HOXD9	ENST00000296795.3|TLR3|ENSG00000164342.8|toll-like receptor 3 	ENST00000513189.1|TLR3|ENSG00000164342.8|toll-like receptor 3
hg19_v2_chr3_+_107364769_107364793	0.0506765	HOXD9	ENST00000449271.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000425868.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000449213.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr10_-_29084886_29085042	0.0503306	HOXD9	ENST00000608061.1|LINC00837|ENSG00000235824.3|long intergenic non-protein coding RNA 837 	ENST00000443246.2|LINC00837|ENSG00000235824.3|long intergenic non-protein coding RNA 837 	ENST00000446012.1|LINC00837|ENSG00000235824.3|long intergenic non-protein coding RNA 837
hg19_v2_chrX_-_130423386_130423403	0.0497944	HOXD9	ENST00000370903.3|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1
hg19_v2_chr3_-_116163830_116163855	0.0492518	HOXD9	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chrX_-_130423200_130423228	0.0491529	HOXD9	ENST00000361420.3|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1
hg19_v2_chr2_-_136594740_136594760	0.0484182	HOXD9	ENST00000264162.2|LCT|ENSG00000115850.5|lactase
hg19_v2_chr6_+_149539767_149539834	0.048331	HOXD9	ENST00000606202.1|TAB2|ENSG00000055208.13|TGF-beta activated kinase 1/MAP3K7 binding protein 2 	ENST00000536230.1|TAB2|ENSG00000055208.13|TGF-beta activated kinase 1/MAP3K7 binding protein 2 	ENST00000445901.1|RP1-111D6.3|ENSG00000228408.1|RP1-111D6.3
hg19_v2_chr1_+_82165350_82165455	0.0476524	HOXD9	ENST00000359929.3|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr7_+_74379083_74379083	0.0471585	HOXD9	ENST00000361825.7|GATSL1|ENSG00000183086.10|GATS protein-like 1
hg19_v2_chrX_-_130423240_130423288	0.045648	HOXD9	ENST00000370910.1|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1 	ENST00000370901.4|IGSF1|ENSG00000147255.13|immunoglobulin superfamily, member 1
hg19_v2_chr8_-_66701319_66701330	0.0410987	HOXD9	ENST00000379419.4|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr2_-_118943930_118943963	0.0410813	HOXD9	ENST00000449075.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000414886.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000449819.1|AC093901.1|ENSG00000226856.1|AC093901.1
hg19_v2_chr6_-_52859968_52860149	0.0407489	HOXD9	ENST00000370959.1|GSTA4|ENSG00000170899.6|glutathione S-transferase alpha 4
hg19_v2_chr9_-_138391692_138391741	0.0403651	HOXD9	ENST00000429260.2|C9orf116|ENSG00000160345.8|chromosome 9 open reading frame 116
hg19_v2_chr11_+_69924679_69924704	0.0403603	HOXD9	ENST00000531604.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr16_-_18911366_18911366	0.0391748	HOXD9	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr1_-_26231589_26231635	0.0374574	HOXD9	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr17_+_9479944_9479965	0.0364217	HOXD9	ENST00000396219.3|WDR16|ENSG00000166596.10|WD repeat domain 16 	ENST00000352665.5|WDR16|ENSG00000166596.10|WD repeat domain 16
hg19_v2_chr17_+_68071389_68071426	0.035997	HOXD9	ENST00000283936.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392671.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr11_+_69924639_69924664	0.035903	HOXD9	ENST00000538023.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000398543.2|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr19_+_45843994_45844015	0.0356612	HOXD9	ENST00000391946.2|KLC3|ENSG00000104892.12|kinesin light chain 3
hg19_v2_chr14_-_67955426_67955460	0.0345548	HOXD9	ENST00000554480.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr6_-_133055815_133055834	0.0339792	HOXD9	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr6_-_39399087_39399150	0.0338483	HOXD9	ENST00000229913.5|KIF6|ENSG00000164627.13|kinesin family member 6 	ENST00000541946.1|KIF6|ENSG00000164627.13|kinesin family member 6 	ENST00000394362.1|KIF6|ENSG00000164627.13|kinesin family member 6
hg19_v2_chr10_+_115614370_115614436	0.0336903	HOXD9	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr1_+_38022513_38022571	0.0331509	HOXD9	ENST00000296218.7|DNALI1|ENSG00000163879.9|dynein, axonemal, light intermediate chain 1
hg19_v2_chr10_+_86184676_86184714	0.0322094	HOXD9	ENST00000543283.1|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2
hg19_v2_chr1_-_48937838_48937905	0.031686	HOXD9	ENST00000371847.3|SPATA6|ENSG00000132122.7|spermatogenesis associated 6
hg19_v2_chr4_-_144940477_144940541	0.0314772	HOXD9	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr3_-_112564797_112564797	0.0314349	HOXD9	ENST00000398214.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like 	ENST00000448932.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like
hg19_v2_chr7_-_107204706_107204797	0.031293	HOXD9	ENST00000393603.2|COG5|ENSG00000164597.9|component of oligomeric golgi complex 5
hg19_v2_chr8_-_80942061_80942086	0.031204	HOXD9	ENST00000519386.1|MRPS28|ENSG00000147586.5|mitochondrial ribosomal protein S28
hg19_v2_chr18_-_24443151_24443163	0.0293281	HOXD9	ENST00000440832.3|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr4_+_69962212_69962229	0.0283541	HOXD9	ENST00000508661.1|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr2_-_175712270_175712316	0.0280027	HOXD9	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr17_+_68071458_68071481	0.0273285	HOXD9	ENST00000589377.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr12_-_88974236_88974256	0.0267833	HOXD9	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr19_-_56826157_56826294	0.0263062	HOXD9	ENST00000592509.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000592679.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000588442.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000593106.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000587492.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000254165.3|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A
hg19_v2_chr13_+_46039037_46039126	0.0251091	HOXD9	ENST00000349995.5|COG3|ENSG00000136152.10|component of oligomeric golgi complex 3
hg19_v2_chr1_-_39339777_39339777	0.0245031	HOXD9	ENST00000397572.2|MYCBP|ENSG00000214114.4|MYC binding protein
hg19_v2_chr4_+_71384257_71384295	0.0242936	HOXD9	ENST00000339336.4|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr3_+_102153859_102153877	0.0227068	HOXD9	ENST00000306176.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1 	ENST00000466937.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr3_+_155860751_155860786	0.0221733	HOXD9	ENST00000471742.1|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr2_+_210518057_210518117	0.0216549	HOXD9	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chrX_+_71401570_71401644	0.021344	HOXD9	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr12_-_110486348_110486370	0.0204299	HOXD9	ENST00000547573.1|C12orf76|ENSG00000174456.9|chromosome 12 open reading frame 76 	ENST00000546651.2|C12orf76|ENSG00000174456.9|chromosome 12 open reading frame 76 	ENST00000551185.2|C12orf76|ENSG00000174456.9|chromosome 12 open reading frame 76
hg19_v2_chr16_+_53483983_53483994	0.0204062	HOXD9	ENST00000544545.1|RBL2|ENSG00000103479.10|retinoblastoma-like 2 (p130)
hg19_v2_chr5_+_61874562_61874685	0.0196638	HOXD9	ENST00000334994.5|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70 	ENST00000409534.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr11_+_89867803_89867906	0.019598	HOXD9	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr8_-_10512569_10512612	0.0194097	HOXD9	ENST00000382483.3|RP1L1|ENSG00000183638.5|retinitis pigmentosa 1-like 1
hg19_v2_chr15_-_49913126_49913158	0.0192739	HOXD9	ENST00000561064.1|FAM227B|ENSG00000166262.11|family with sequence similarity 227, member B 	ENST00000299338.6|FAM227B|ENSG00000166262.11|family with sequence similarity 227, member B
hg19_v2_chr14_+_65878565_65878632	0.0191833	HOXD9	ENST00000556518.1|FUT8|ENSG00000033170.12|fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 	ENST00000557164.1|FUT8|ENSG00000033170.12|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)
hg19_v2_chr2_-_228497888_228498036	0.0190773	HOXD9	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr15_-_90222642_90222658	0.0187466	HOXD9	ENST00000430628.2|PLIN1|ENSG00000166819.7|perilipin 1
hg19_v2_chr6_-_138833630_138833677	0.0179956	HOXD9	ENST00000533765.1|NHSL1|ENSG00000135540.7|NHS-like 1
hg19_v2_chr10_-_49459800_49459841	0.0178744	HOXD9	ENST00000305531.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr1_-_244006528_244006588	0.0173695	HOXD9	ENST00000336199.5|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3 	ENST00000263826.5|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3
hg19_v2_chr12_-_10007448_10007448	0.0160924	HOXD9	ENST00000538152.1|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chr4_-_168155700_168155722	0.0144416	HOXD9	ENST00000357545.4|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000512648.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
hg19_v2_chr15_+_52155001_52155035	0.0142445	HOXD9	ENST00000544199.1|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous)
hg19_v2_chr16_+_22518495_22518495	0.0141649	HOXD9	ENST00000541154.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr7_+_5920429_5920429	0.013942	HOXD9	ENST00000242104.5|OCM|ENSG00000122543.6|oncomodulin
hg19_v2_chr12_-_118628315_118628348	0.0138872	HOXD9	ENST00000540561.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr2_+_173686303_173686325	0.0130962	HOXD9	ENST00000397087.3|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr12_-_10607084_10607284	0.0121367	HOXD9	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr3_-_157221380_157221415	0.0121014	HOXD9	ENST00000468233.1|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr11_-_16430399_16430440	0.0117053	HOXD9	ENST00000528252.1|SOX6|ENSG00000110693.11|SRY (sex determining region Y)-box 6
hg19_v2_chr5_-_138775177_138775220	0.0112855	HOXD9	ENST00000302060.5|DNAJC18|ENSG00000170464.5|DnaJ (Hsp40) homolog, subfamily C, member 18
hg19_v2_chr2_+_28824786_28824791	0.0112487	HOXD9	ENST00000541605.1|PLB1|ENSG00000163803.8|phospholipase B1
hg19_v2_chr7_-_107880508_107880522	0.0111928	HOXD9	ENST00000425651.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr3_-_139258521_139258671	0.0111051	HOXD9	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr5_+_140180635_140180783	0.010657	HOXD9	ENST00000522353.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3 	ENST00000532566.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3
hg19_v2_chr14_+_92789498_92789537	0.0100784	HOXD9	ENST00000531433.1|SLC24A4|ENSG00000140090.13|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
hg19_v2_chr9_+_124103625_124103625	0.00976707	HOXD9	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr15_-_75748143_75748183	0.00974459	HOXD9	ENST00000568431.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568309.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568190.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000570115.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000564778.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr11_+_34999328_34999334	0.00833498	HOXD9	ENST00000526309.1|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X
hg19_v2_chr4_-_100065419_100065434	0.00818999	HOXD9	ENST00000504125.1|ADH4|ENSG00000198099.4|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENST00000505590.1|ADH4|ENSG00000198099.4|alcohol dehydrogenase 4 (class II), pi polypeptide
hg19_v2_chrX_+_135388147_135388181	0.00811391	HOXD9	ENST00000394141.1|GPR112|ENSG00000156920.6|G protein-coupled receptor 112
hg19_v2_chr10_-_99030395_99030434	0.00788139	HOXD9	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr4_+_69962185_69962202	0.00709385	HOXD9	ENST00000305231.7|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr10_+_5090940_5090983	0.00706577	HOXD9	ENST00000602997.1|AKR1C3|ENSG00000196139.7|aldo-keto reductase family 1, member C3
hg19_v2_chr20_+_9146969_9147005	0.00704564	HOXD9	ENST00000416836.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr14_+_94385235_94385258	0.00700503	HOXD9	ENST00000557719.1|FAM181A|ENSG00000140067.6|family with sequence similarity 181, member A 	ENST00000267594.5|FAM181A|ENSG00000140067.6|family with sequence similarity 181, member A
hg19_v2_chr16_-_18887627_18887627	0.00692793	HOXD9	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr2_-_166060382_166060411	0.00676384	HOXD9	ENST00000409101.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr7_-_16921601_16921614	0.00608325	HOXD9	ENST00000402239.3|AGR3|ENSG00000173467.4|anterior gradient 3 	ENST00000310398.2|AGR3|ENSG00000173467.4|anterior gradient 3 	ENST00000414935.1|AGR3|ENSG00000173467.4|anterior gradient 3
hg19_v2_chr7_+_93535866_93535906	0.00552137	HOXD9	ENST00000429473.1|GNGT1|ENSG00000127928.8|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 	ENST00000430875.1|GNGT1|ENSG00000127928.8|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 	ENST00000428834.1|GNGT1|ENSG00000127928.8|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
hg19_v2_chr4_-_168155577_168155661	0.00521016	HOXD9	ENST00000541354.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000509854.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000512681.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000421836.2|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000510741.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000510403.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
hg19_v2_chr3_-_139396853_139396879	0.00497761	HOXD9	ENST00000406164.1|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3 	ENST00000406824.1|NMNAT3|ENSG00000163864.10|nicotinamide nucleotide adenylyltransferase 3
hg19_v2_chr11_+_107461804_107461882	0.00487492	HOXD9	ENST00000531234.1|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1
hg19_v2_chr2_+_210517895_210518021	0.00446409	HOXD9	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr7_-_92146729_92146876	0.00441616	HOXD9	ENST00000541751.1|PEX1|ENSG00000127980.11|peroxisomal biogenesis factor 1
hg19_v2_chr1_-_152332480_152332484	0.00432731	HOXD9	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr2_+_135809835_135809874	0.00407415	HOXD9	ENST00000264158.8|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000539493.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000442034.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000425393.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic)
hg19_v2_chr3_-_100712352_100712361	0.00401074	HOXD9	ENST00000471714.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein 	ENST00000284322.5|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein
hg19_v2_chr6_+_45390222_45390298	0.0037043	HOXD9	ENST00000359524.5|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr16_-_21442874_21442874	0.00336021	HOXD9	ENST00000534903.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr9_-_215744_215893	0.0031883	HOXD9	ENST00000382387.2|C9orf66|ENSG00000183784.5|chromosome 9 open reading frame 66
hg19_v2_chr8_+_86089460_86089483	0.00300685	HOXD9	ENST00000418930.2|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr18_+_3466248_3466312	0.00271151	HOXD9	ENST00000581029.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000581442.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000579007.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4
hg19_v2_chrX_-_33229636_33229651	0.00194	HOXD9	ENST00000357033.4|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr2_-_158345462_158345480	0.00183474	HOXD9	ENST00000439355.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein 	ENST00000540637.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein
hg19_v2_chr17_-_29641084_29641103	0.00167999	HOXD9	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr15_-_90222610_90222634	0.000821464	HOXD9	ENST00000300055.5|PLIN1|ENSG00000166819.7|perilipin 1
hg19_v2_chr4_-_83765613_83765662	0.000370719	HOXD9	ENST00000503937.1|SEC31A|ENSG00000138674.12|SEC31 homolog A (S. cerevisiae)
hg19_v2_chr7_-_111032971_111032986	7.68005e-05	HOXD9	ENST00000450877.1|IMMP2L|ENSG00000184903.5|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
