hg19_v2_chr6_-_26250835_26250874	0.50651	HOXD4	ENST00000446824.2|HIST1H3F|ENSG00000256316.1|histone cluster 1, H3f
hg19_v2_chr17_+_47448102_47448102	0.381039	HOXD4	ENST00000576461.1|RP11-81K2.1|ENSG00000262039.1|Uncharacterized protein
hg19_v2_chr13_+_51913819_51913838	0.342105	HOXD4	ENST00000419898.2|SERPINE3|ENSG00000253309.2|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3
hg19_v2_chr8_+_79503458_79503473	0.322295	HOXD4	ENST00000518467.1|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr4_+_183065793_183065864	0.308571	HOXD4	ENST00000512480.1|TENM3|ENSG00000218336.3|teneurin transmembrane protein 3
hg19_v2_chrX_-_109590174_109590203	0.289089	HOXD4	ENST00000372054.1|GNG5P2|ENSG00000133136.3|guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2
hg19_v2_chr6_-_15548591_15548607	0.250103	HOXD4	ENST00000509674.1|DTNBP1|ENSG00000047579.15|dystrobrevin binding protein 1
hg19_v2_chr10_+_69869237_69869264	0.24137	HOXD4	ENST00000373675.3|MYPN|ENSG00000138347.11|myopalladin
hg19_v2_chr18_+_22040593_22040616	0.24137	HOXD4	ENST00000256906.4|HRH4|ENSG00000134489.6|histamine receptor H4
hg19_v2_chr3_-_126327398_126327398	0.235743	HOXD4	ENST00000383572.2|TXNRD3NB|ENSG00000206483.4|thioredoxin reductase 3 neighbor
hg19_v2_chr3_+_142342240_142342249	0.234926	HOXD4	ENST00000497199.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr3_-_4927447_4927479	0.222107	HOXD4	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr5_-_13944652_13944652	0.218438	HOXD4	ENST00000265104.4|DNAH5|ENSG00000039139.9|dynein, axonemal, heavy chain 5
hg19_v2_chr8_-_40200877_40200902	0.216552	HOXD4	ENST00000521030.1|CTA-392C11.1|ENSG00000253802.1|CTA-392C11.1
hg19_v2_chr3_+_158787041_158787074	0.209867	HOXD4	ENST00000471575.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000476809.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000485419.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr13_+_110958124_110958159	0.201832	HOXD4	ENST00000400163.2|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chr4_+_39640787_39640834	0.200906	HOXD4	ENST00000532680.1|RP11-539G18.2|ENSG00000255458.1|RP11-539G18.2
hg19_v2_chr9_-_128246769_128246780	0.200222	HOXD4	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr18_-_21891460_21891506	0.197904	HOXD4	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr5_+_102200948_102201183	0.197179	HOXD4	ENST00000511477.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000506006.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000509832.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr17_-_73844722_73844751	0.195102	HOXD4	ENST00000586257.1|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chrX_+_149867681_149867743	0.194605	HOXD4	ENST00000438018.1|MTMR1|ENSG00000063601.12|myotubularin related protein 1 	ENST00000436701.1|MTMR1|ENSG00000063601.12|myotubularin related protein 1
hg19_v2_chr2_+_179318295_179318295	0.189236	HOXD4	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr18_-_74839891_74839921	0.18877	HOXD4	ENST00000581878.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr3_-_196987309_196987350	0.186186	HOXD4	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr2_-_203735484_203735539	0.185799	HOXD4	ENST00000420558.1|ICA1L|ENSG00000163596.12|islet cell autoantigen 1,69kDa-like 	ENST00000418208.1|ICA1L|ENSG00000163596.12|islet cell autoantigen 1,69kDa-like
hg19_v2_chr16_-_21663950_21663981	0.180298	HOXD4	ENST00000268389.4|IGSF6|ENSG00000140749.7|immunoglobulin superfamily, member 6
hg19_v2_chr3_-_191000172_191000209	0.175657	HOXD4	ENST00000427544.2|UTS2B|ENSG00000188958.5|urotensin 2B
hg19_v2_chr22_-_29107919_29108032	0.171187	HOXD4	ENST00000434810.1|CHEK2|ENSG00000183765.16|checkpoint kinase 2 	ENST00000456369.1|CHEK2|ENSG00000183765.16|checkpoint kinase 2
hg19_v2_chr2_+_109237717_109237729	0.167179	HOXD4	ENST00000409441.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr8_-_18871159_18871201	0.166728	HOXD4	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr10_-_14372870_14372944	0.162179	HOXD4	ENST00000357447.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chrX_+_139791917_139791938	0.159061	HOXD4	ENST00000607004.1|LINC00632|ENSG00000203930.6|long intergenic non-protein coding RNA 632 	ENST00000370535.3|LINC00632|ENSG00000203930.6|long intergenic non-protein coding RNA 632
hg19_v2_chr4_+_146539415_146539415	0.157489	HOXD4	ENST00000281317.5|MMAA|ENSG00000151611.9|methylmalonic aciduria (cobalamin deficiency) cblA type
hg19_v2_chr14_-_54425475_54425500	0.154267	HOXD4	ENST00000559642.1|BMP4|ENSG00000125378.11|bone morphogenetic protein 4
hg19_v2_chr12_-_118628350_118628371	0.151649	HOXD4	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr12_-_86650077_86650095	0.146191	HOXD4	ENST00000552808.2|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENST00000547225.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr1_+_117963209_117963245	0.145302	HOXD4	ENST00000449370.2|MAN1A2|ENSG00000198162.8|mannosidase, alpha, class 1A, member 2
hg19_v2_chr1_-_235814048_235814067	0.142045	HOXD4	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr7_+_16793160_16793160	0.141664	HOXD4	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr5_+_59783941_59784066	0.140136	HOXD4	ENST00000506884.1|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding) 	ENST00000504876.2|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v2_chrX_+_56590002_56590072	0.132674	HOXD4	ENST00000338222.5|UBQLN2|ENSG00000188021.7|ubiquilin 2
hg19_v2_chrX_-_13835147_13835224	0.13235	HOXD4	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr6_-_44281043_44281091	0.131944	HOXD4	ENST00000244571.4|AARS2|ENSG00000124608.4|alanyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr22_+_23248512_23248512	0.12959	HOXD4	ENST00000390325.2|IGLC3|ENSG00000211679.2|immunoglobulin lambda constant 3 (Kern-Oz+ marker)
hg19_v2_chr18_-_2982869_2982878	0.126633	HOXD4	ENST00000584915.1|LPIN2|ENSG00000101577.5|lipin 2
hg19_v2_chr17_+_41132564_41132600	0.125789	HOXD4	ENST00000361677.1|RUNDC1|ENSG00000198863.3|RUN domain containing 1 	ENST00000589705.1|RUNDC1|ENSG00000198863.3|RUN domain containing 1
hg19_v2_chr1_+_67632083_67632169	0.124212	HOXD4	ENST00000347310.5|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000371002.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr1_+_149754227_149754246	0.120243	HOXD4	ENST00000444948.1|FCGR1A|ENSG00000150337.9|Fc fragment of IgG, high affinity Ia, receptor (CD64) 	ENST00000369168.4|FCGR1A|ENSG00000150337.9|Fc fragment of IgG, high affinity Ia, receptor (CD64)
hg19_v2_chr3_+_15045419_15045433	0.11661	HOXD4	ENST00000406272.2|NR2C2|ENSG00000177463.11|nuclear receptor subfamily 2, group C, member 2
hg19_v2_chrX_+_37865804_37865842	0.113483	HOXD4	ENST00000297875.2|SYTL5|ENSG00000147041.7|synaptotagmin-like 5 	ENST00000357972.5|SYTL5|ENSG00000147041.7|synaptotagmin-like 5
hg19_v2_chr5_-_10761206_10761421	0.110626	HOXD4	ENST00000432074.2|DAP|ENSG00000112977.11|death-associated protein 	ENST00000230895.6|DAP|ENSG00000112977.11|death-associated protein
hg19_v2_chr6_-_53013620_53013644	0.110046	HOXD4	ENST00000259803.7|GCM1|ENSG00000137270.10|glial cells missing homolog 1 (Drosophila)
hg19_v2_chr4_+_146560245_146560245	0.109458	HOXD4	ENST00000541599.1|MMAA|ENSG00000151611.9|methylmalonic aciduria (cobalamin deficiency) cblA type
hg19_v2_chr17_-_7218631_7218711	0.106975	HOXD4	ENST00000577040.2|GPS2|ENSG00000132522.11|G protein pathway suppressor 2 	ENST00000389167.5|GPS2|ENSG00000132522.11|G protein pathway suppressor 2 	ENST00000391950.3|GPS2|ENSG00000132522.11|G protein pathway suppressor 2
hg19_v2_chr1_+_202385953_202385994	0.106788	HOXD4	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr3_-_195310802_195310818	0.106394	HOXD4	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr11_-_64684672_64684722	0.105314	HOXD4	ENST00000377264.3|ATG2A|ENSG00000110046.8|autophagy related 2A 	ENST00000421419.2|ATG2A|ENSG00000110046.8|autophagy related 2A
hg19_v2_chr4_+_169418255_169418278	0.105025	HOXD4	ENST00000505667.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000511948.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr17_-_78450398_78450413	0.104966	HOXD4	ENST00000306773.4|NPTX1|ENSG00000171246.5|neuronal pentraxin I
hg19_v2_chr12_-_39734783_39734860	0.102185	HOXD4	ENST00000552961.1|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chr7_+_47834908_47835022	0.100971	HOXD4	ENST00000418326.2|C7orf69|ENSG00000136275.6|chromosome 7 open reading frame 69
hg19_v2_chr8_-_42396185_42396197	0.100866	HOXD4	ENST00000518717.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr14_-_24911868_24911902	0.0981421	HOXD4	ENST00000554698.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr21_+_43823983_43824052	0.0972494	HOXD4	ENST00000291535.6|UBASH3A|ENSG00000160185.9|ubiquitin associated and SH3 domain containing A 	ENST00000450356.1|UBASH3A|ENSG00000160185.9|ubiquitin associated and SH3 domain containing A 	ENST00000319294.6|UBASH3A|ENSG00000160185.9|ubiquitin associated and SH3 domain containing A 	ENST00000398367.1|UBASH3A|ENSG00000160185.9|ubiquitin associated and SH3 domain containing A
hg19_v2_chr10_+_95848824_95848852	0.0960351	HOXD4	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr12_-_49245936_49245955	0.0957324	HOXD4	ENST00000308025.3|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
hg19_v2_chr11_+_101983176_101983245	0.0948028	HOXD4	ENST00000524575.1|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr12_+_112279782_112279871	0.0937359	HOXD4	ENST00000550735.2|MAPKAPK5|ENSG00000089022.9|mitogen-activated protein kinase-activated protein kinase 5
hg19_v2_chr10_+_48189612_48189612	0.0934924	HOXD4	ENST00000453919.1|AGAP9|ENSG00000198035.9|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
hg19_v2_chr8_+_24151620_24151647	0.0907583	HOXD4	ENST00000437154.2|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr4_-_153601136_153601317	0.0876497	HOXD4	ENST00000504064.1|TMEM154|ENSG00000170006.7|transmembrane protein 154 	ENST00000304385.3|TMEM154|ENSG00000170006.7|transmembrane protein 154
hg19_v2_chr7_+_101460882_101460923	0.0874946	HOXD4	ENST00000292535.7|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000549414.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000550008.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000546411.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000556210.1|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chr2_-_165424973_165425010	0.0874016	HOXD4	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr14_+_99947715_99947791	0.0845148	HOXD4	ENST00000389879.5|CCNK|ENSG00000090061.13|cyclin K 	ENST00000557441.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555049.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555842.1|CCNK|ENSG00000090061.13|cyclin K
hg19_v2_chr12_+_32654965_32654977	0.083835	HOXD4	ENST00000472289.1|FGD4|ENSG00000139132.10|FYVE, RhoGEF and PH domain containing 4
hg19_v2_chr2_+_27886330_27886344	0.0816948	HOXD4	ENST00000326019.6|SLC4A1AP|ENSG00000163798.9|solute carrier family 4 (anion exchanger), member 1, adaptor protein
hg19_v2_chr2_+_179317994_179317994	0.0799185	HOXD4	ENST00000375129.4|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chrX_-_92928557_92928613	0.0780818	HOXD4	ENST00000373079.3|NAP1L3|ENSG00000186310.9|nucleosome assembly protein 1-like 3 	ENST00000475430.2|NAP1L3|ENSG00000186310.9|nucleosome assembly protein 1-like 3
hg19_v2_chr12_+_21168630_21168630	0.0770151	HOXD4	ENST00000421593.2|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr22_-_30642728_30642754	0.0768894	HOXD4	ENST00000403987.3|LIF|ENSG00000128342.4|leukemia inhibitory factor
hg19_v2_chr2_+_90198535_90198535	0.0768851	HOXD4	ENST00000390276.2|IGKV1D-12|ENSG00000240834.1|immunoglobulin kappa variable 1D-12
hg19_v2_chr21_-_27423339_27423352	0.076097	HOXD4	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr14_+_23067146_23067160	0.0758999	HOXD4	ENST00000428304.2|ABHD4|ENSG00000100439.6|abhydrolase domain containing 4
hg19_v2_chr16_+_103816_103900	0.0735993	HOXD4	ENST00000383018.3|SNRNP25|ENSG00000161981.6|small nuclear ribonucleoprotein 25kDa (U11/U12) 	ENST00000417493.1|SNRNP25|ENSG00000161981.6|small nuclear ribonucleoprotein 25kDa (U11/U12)
hg19_v2_chr3_-_4508925_4508965	0.0720476	HOXD4	ENST00000534863.1|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000383843.5|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000458465.2|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000405420.2|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000272902.5|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1
hg19_v2_chr1_-_151762943_151763012	0.0718836	HOXD4	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr6_-_136847099_136847124	0.0715162	HOXD4	ENST00000438100.2|MAP7|ENSG00000135525.14|microtubule-associated protein 7
hg19_v2_chr4_+_169418195_169418217	0.0704233	HOXD4	ENST00000261509.6|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000335742.7|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr2_-_159237472_159237472	0.0703181	HOXD4	ENST00000409187.1|CCDC148|ENSG00000153237.13|coiled-coil domain containing 148
hg19_v2_chr16_-_15736953_15737025	0.0700069	HOXD4	ENST00000548025.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000551742.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000602337.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000344181.3|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000396368.3|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr4_+_169753156_169753192	0.0687537	HOXD4	ENST00000393726.3|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000507735.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr3_-_11623804_11623865	0.0684635	HOXD4	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr4_+_71019903_71019914	0.0682623	HOXD4	ENST00000344526.5|C4orf40|ENSG00000187533.9|chromosome 4 open reading frame 40
hg19_v2_chr5_+_101569696_101569696	0.0678363	HOXD4	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr12_-_49245916_49245932	0.0678223	HOXD4	ENST00000552512.1|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 	ENST00000551468.1|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
hg19_v2_chr14_-_64761078_64761128	0.0671686	HOXD4	ENST00000341099.4|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000556275.1|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000542956.1|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000353772.3|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000357782.2|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000267525.6|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta)
hg19_v2_chr15_+_64386261_64386322	0.0665319	HOXD4	ENST00000560829.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr1_-_234831899_234831901	0.0663237	HOXD4	ENST00000442382.1|RP4-781K5.6|ENSG00000230628.1|RP4-781K5.6
hg19_v2_chr2_-_31361543_31361592	0.0656836	HOXD4	ENST00000349752.5|GALNT14|ENSG00000158089.10|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
hg19_v2_chr1_-_231560790_231560790	0.0645324	HOXD4	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr2_-_27579842_27579907	0.0644419	HOXD4	ENST00000423998.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa 	ENST00000264720.3|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr14_+_29236269_29236287	0.064157	HOXD4	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr4_-_152149033_152149182	0.0637177	HOXD4	ENST00000514152.1|SH3D19|ENSG00000109686.12|SH3 domain containing 19
hg19_v2_chr3_+_69812877_69812962	0.0632832	HOXD4	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr3_+_159943362_159943423	0.0631665	HOXD4	ENST00000326474.3|C3orf80|ENSG00000180044.3|chromosome 3 open reading frame 80
hg19_v2_chr4_-_130014705_130014728	0.0630857	HOXD4	ENST00000503401.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1
hg19_v2_chr2_+_110656005_110656005	0.0619741	HOXD4	ENST00000437679.2|LIMS3|ENSG00000256977.6|LIM and senescent cell antigen-like domains 3
hg19_v2_chr15_+_93443419_93443580	0.0614763	HOXD4	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr4_+_124571409_124571447	0.061113	HOXD4	ENST00000514823.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000511919.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000508111.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091
hg19_v2_chr17_+_66521936_66522026	0.0597582	HOXD4	ENST00000592800.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chr8_+_24151553_24151590	0.0596085	HOXD4	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr22_+_44427230_44427253	0.0588962	HOXD4	ENST00000444029.1|PARVB|ENSG00000188677.10|parvin, beta
hg19_v2_chr2_-_203735586_203735769	0.0574782	HOXD4	ENST00000454326.1|ICA1L|ENSG00000163596.12|islet cell autoantigen 1,69kDa-like 	ENST00000432273.1|ICA1L|ENSG00000163596.12|islet cell autoantigen 1,69kDa-like 	ENST00000450143.1|ICA1L|ENSG00000163596.12|islet cell autoantigen 1,69kDa-like 	ENST00000411681.1|ICA1L|ENSG00000163596.12|islet cell autoantigen 1,69kDa-like
hg19_v2_chr3_+_51575596_51575596	0.0570028	HOXD4	ENST00000409535.2|RAD54L2|ENSG00000164080.9|RAD54-like 2 (S. cerevisiae)
hg19_v2_chr6_+_130339710_130339745	0.0565801	HOXD4	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr3_-_186524144_186524201	0.0563559	HOXD4	ENST00000427785.1|RFC4|ENSG00000163918.6|replication factor C (activator 1) 4, 37kDa
hg19_v2_chr2_+_234826016_234826050	0.0552674	HOXD4	ENST00000324695.4|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8 	ENST00000433712.2|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8
hg19_v2_chr11_-_72492878_72492899	0.0552585	HOXD4	ENST00000535054.1|STARD10|ENSG00000214530.3|StAR-related lipid transfer (START) domain containing 10 	ENST00000545082.1|STARD10|ENSG00000214530.3|StAR-related lipid transfer (START) domain containing 10
hg19_v2_chr3_-_137851220_137851236	0.0552171	HOXD4	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr18_+_29027696_29027774	0.0550646	HOXD4	ENST00000257189.4|DSG3|ENSG00000134757.4|desmoglein 3
hg19_v2_chr16_+_84801852_84801877	0.0547737	HOXD4	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr10_-_61899124_61899158	0.0522862	HOXD4	ENST00000373815.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr14_-_24911971_24912015	0.051917	HOXD4	ENST00000555365.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1 	ENST00000399395.3|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr12_+_41831485_41831555	0.0518148	HOXD4	ENST00000539469.2|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4 	ENST00000298919.7|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4
hg19_v2_chr5_-_78809950_78810040	0.050969	HOXD4	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chrX_+_36246735_36246735	0.0508679	HOXD4	ENST00000378653.3|CXorf30|ENSG00000205081.4|chromosome X open reading frame 30
hg19_v2_chr1_+_159750776_159750808	0.0503691	HOXD4	ENST00000368107.1|DUSP23|ENSG00000158716.4|dual specificity phosphatase 23
hg19_v2_chr1_-_9953295_9953320	0.050003	HOXD4	ENST00000377258.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr5_+_111755280_111755280	0.0485185	HOXD4	ENST00000600409.1|EPB41L4A-AS2|ENSG00000268358.1|EPB41L4A antisense RNA 2 (head to head)
hg19_v2_chr17_-_41132410_41132545	0.0479001	HOXD4	ENST00000409446.3|PTGES3L|ENSG00000267060.1|prostaglandin E synthase 3 (cytosolic)-like 	ENST00000409399.1|PTGES3L-AARSD1|ENSG00000108825.13|PTGES3L-AARSD1 readthrough 	ENST00000421990.2|PTGES3L-AARSD1|ENSG00000108825.13|PTGES3L-AARSD1 readthrough 	ENST00000453594.1|PTGES3L|ENSG00000267060.1|prostaglandin E synthase 3 (cytosolic)-like
hg19_v2_chr20_+_32150140_32150230	0.0467903	HOXD4	ENST00000344201.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000346541.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397800.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397798.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000492345.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr1_+_203444887_203444975	0.0465755	HOXD4	ENST00000343110.2|PRELP|ENSG00000188783.5|proline/arginine-rich end leucine-rich repeat protein
hg19_v2_chr5_-_55412774_55412784	0.0461831	HOXD4	ENST00000434982.2|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55
hg19_v2_chr12_+_16109519_16109568	0.0449839	HOXD4	ENST00000526530.1|DERA|ENSG00000023697.8|deoxyribose-phosphate aldolase (putative)
hg19_v2_chr11_+_128563652_128563689	0.0445563	HOXD4	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr5_+_66300464_66300505	0.0432698	HOXD4	ENST00000436277.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr9_+_273038_273076	0.0431179	HOXD4	ENST00000487230.1|DOCK8|ENSG00000107099.11|dedicator of cytokinesis 8 	ENST00000469391.1|DOCK8|ENSG00000107099.11|dedicator of cytokinesis 8
hg19_v2_chr2_-_228497888_228498036	0.0425526	HOXD4	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr3_+_140981456_140981508	0.0421352	HOXD4	ENST00000504264.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr14_+_23067166_23067219	0.0420741	HOXD4	ENST00000216327.6|ABHD4|ENSG00000100439.6|abhydrolase domain containing 4 	ENST00000542041.1|ABHD4|ENSG00000100439.6|abhydrolase domain containing 4
hg19_v2_chr16_-_29910853_29910903	0.0387115	HOXD4	ENST00000308713.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr11_-_36310958_36310999	0.0386497	HOXD4	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr9_+_470288_470336	0.0384286	HOXD4	ENST00000382303.1|KANK1|ENSG00000107104.14|KN motif and ankyrin repeat domains 1
hg19_v2_chr2_+_158114051_158114110	0.0375999	HOXD4	ENST00000259056.4|GALNT5|ENSG00000136542.4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
hg19_v2_chr2_-_208030295_208030332	0.0373978	HOXD4	ENST00000458272.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr1_+_22138758_22138856	0.0370349	HOXD4	ENST00000344642.2|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2 	ENST00000543870.1|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2
hg19_v2_chr3_-_157221380_157221415	0.0364602	HOXD4	ENST00000468233.1|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr2_-_207024233_207024327	0.0363271	HOXD4	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr5_+_95066823_95066879	0.0358554	HOXD4	ENST00000506817.1|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3 	ENST00000379982.3|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3
hg19_v2_chr2_+_166095898_166095940	0.0356417	HOXD4	ENST00000424833.1|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000375437.2|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit 	ENST00000357398.3|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr18_-_19283649_19283830	0.0344764	HOXD4	ENST00000584464.1|ABHD3|ENSG00000158201.5|abhydrolase domain containing 3 	ENST00000578270.1|ABHD3|ENSG00000158201.5|abhydrolase domain containing 3
hg19_v2_chr15_-_64385981_64386077	0.0342024	HOXD4	ENST00000557835.1|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A 	ENST00000380290.3|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A 	ENST00000559950.1|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A
hg19_v2_chr17_-_26733179_26733237	0.0332267	HOXD4	ENST00000440501.1|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1 	ENST00000321666.5|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1
hg19_v2_chr1_+_201617450_201617465	0.0322847	HOXD4	ENST00000295624.6|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367297.4|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367300.3|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr3_+_197518100_197518150	0.0315589	HOXD4	ENST00000438796.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000414675.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000441090.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000334859.4|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENST00000425562.2|LRCH3|ENSG00000186001.8|leucine-rich repeats and calponin homology (CH) domain containing 3
hg19_v2_chr5_+_66300446_66300463	0.0313952	HOXD4	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr10_+_18629628_18629672	0.0310523	HOXD4	ENST00000377329.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr6_-_36515177_36515270	0.0309366	HOXD4	ENST00000229812.7|STK38|ENSG00000112079.8|serine/threonine kinase 38
hg19_v2_chr15_-_88799661_88799755	0.0308803	HOXD4	ENST00000360948.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000357724.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000355254.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000317501.3|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr5_+_157158205_157158205	0.0300398	HOXD4	ENST00000231198.7|THG1L|ENSG00000113272.9|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
hg19_v2_chr5_+_69321074_69321200	0.0268615	HOXD4	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr2_+_171034646_171034706	0.0262885	HOXD4	ENST00000409044.3|MYO3B|ENSG00000071909.14|myosin IIIB 	ENST00000408978.4|MYO3B|ENSG00000071909.14|myosin IIIB
hg19_v2_chr11_-_89224638_89224653	0.025253	HOXD4	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr1_+_214161854_214161892	0.0251342	HOXD4	ENST00000435016.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr11_-_31531121_31531192	0.024676	HOXD4	ENST00000532287.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000526776.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000534812.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000529749.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000278200.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000530023.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000533642.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr7_+_29186192_29186222	0.0245701	HOXD4	ENST00000539406.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr6_-_49712072_49712088	0.0240145	HOXD4	ENST00000423399.2|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr19_-_14064114_14064204	0.0236913	HOXD4	ENST00000585607.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538517.2|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000587458.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538371.2|PODNL1|ENSG00000132000.7|podocan-like 1
hg19_v2_chr19_-_5903714_5903809	0.023019	HOXD4	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr12_-_86650045_86650076	0.0226668	HOXD4	ENST00000604798.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr15_+_80364901_80364932	0.0223222	HOXD4	ENST00000560228.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559835.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000559775.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558688.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560392.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000560976.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558272.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000558390.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr2_+_234590556_234590584	0.0214298	HOXD4	ENST00000373426.3|UGT1A7|ENSG00000244122.2|UDP glucuronosyltransferase 1 family, polypeptide A7
hg19_v2_chr10_+_86184676_86184714	0.0212903	HOXD4	ENST00000543283.1|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2
hg19_v2_chr10_+_13652047_13652047	0.021191	HOXD4	ENST00000601460.1|RP11-295P9.3|ENSG00000239665.4|Uncharacterized protein
hg19_v2_chr9_-_131790550_131790634	0.0209341	HOXD4	ENST00000372554.4|SH3GLB2|ENSG00000148341.13|SH3-domain GRB2-like endophilin B2 	ENST00000372564.3|SH3GLB2|ENSG00000148341.13|SH3-domain GRB2-like endophilin B2
hg19_v2_chr6_-_49712091_49712107	0.0204992	HOXD4	ENST00000371159.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr20_+_42136308_42136358	0.0201084	HOXD4	ENST00000434666.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila) 	ENST00000427442.2|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila) 	ENST00000439769.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila) 	ENST00000418998.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chr5_-_39274617_39274636	0.0197075	HOXD4	ENST00000510188.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr5_-_150727111_150727151	0.0191596	HOXD4	ENST00000335244.4|SLC36A2|ENSG00000186335.4|solute carrier family 36 (proton/amino acid symporter), member 2 	ENST00000521967.1|SLC36A2|ENSG00000186335.4|solute carrier family 36 (proton/amino acid symporter), member 2
hg19_v2_chr15_+_36887069_36887101	0.0185595	HOXD4	ENST00000566807.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000567389.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000562877.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41
hg19_v2_chr1_+_144146808_144146812	0.0180373	HOXD4	ENST00000369190.5|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000412624.2|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000369365.3|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8
hg19_v2_chr15_+_55700741_55700774	0.0177215	HOXD4	ENST00000569691.1|C15orf65|ENSG00000261652.2|chromosome 15 open reading frame 65
hg19_v2_chr14_-_101036119_101036131	0.0175181	HOXD4	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr2_+_88047606_88047606	0.0172711	HOXD4	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr15_-_65809991_65810037	0.015726	HOXD4	ENST00000559526.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000358939.4|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000560665.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000321118.7|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000339244.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000300141.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr5_-_179499086_179499105	0.015084	HOXD4	ENST00000261947.4|RNF130|ENSG00000113269.9|ring finger protein 130
hg19_v2_chr15_+_84115868_84115980	0.0141137	HOXD4	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr1_-_151762900_151762910	0.0137403	HOXD4	ENST00000440583.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr6_+_53659746_53659817	0.0135937	HOXD4	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr6_+_123317116_123317260	0.0134204	HOXD4	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr2_+_33701684_33701702	0.0128132	HOXD4	ENST00000442390.1|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr5_+_52083730_52083821	0.0124836	HOXD4	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr5_+_140743859_140743898	0.0114234	HOXD4	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr16_+_24549014_24549082	0.0100219	HOXD4	ENST00000564314.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6 	ENST00000567686.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr13_-_45768841_45768855	0.00990349	HOXD4	ENST00000379108.1|KCTD4|ENSG00000180332.5|potassium channel tetramerization domain containing 4
hg19_v2_chr15_-_64386120_64386217	0.00949347	HOXD4	ENST00000300030.3|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A
hg19_v2_chr4_-_89951028_89951062	0.00943671	HOXD4	ENST00000506913.1|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr16_+_87636474_87636533	0.0089739	HOXD4	ENST00000284262.2|JPH3|ENSG00000154118.8|junctophilin 3
hg19_v2_chr1_-_92952433_92952489	0.0083824	HOXD4	ENST00000294702.5|GFI1|ENSG00000162676.7|growth factor independent 1 transcription repressor
hg19_v2_chr2_-_176046391_176046445	0.00685778	HOXD4	ENST00000392541.3|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) 	ENST00000409194.1|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
hg19_v2_chr8_-_102803163_102803211	0.00681302	HOXD4	ENST00000523645.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000520346.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000220931.6|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522448.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522951.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522252.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000519098.1|NCALD|ENSG00000104490.13|neurocalcin delta
hg19_v2_chr6_-_49712147_49712158	0.00660712	HOXD4	ENST00000433368.2|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3 	ENST00000354620.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr2_+_224822121_224822190	0.0063819	HOXD4	ENST00000258383.3|MRPL44|ENSG00000135900.3|mitochondrial ribosomal protein L44
hg19_v2_chr11_+_12766583_12766592	0.00610768	HOXD4	ENST00000361985.2|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr4_-_46996424_46996424	0.00520108	HOXD4	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr1_-_87379785_87379830	0.00459422	HOXD4	ENST00000401030.3|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA. 	ENST00000370554.1|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA.
hg19_v2_chr1_+_84630645_84630652	0.00385361	HOXD4	ENST00000394839.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr7_-_122339162_122339210	0.00336439	HOXD4	ENST00000340112.2|RNF133|ENSG00000188050.2|ring finger protein 133
hg19_v2_chr18_+_32556892_32557026	0.00294979	HOXD4	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr12_-_112279694_112279710	0.0023819	HOXD4	ENST00000443596.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1 	ENST00000442119.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1
hg19_v2_chr13_+_73629107_73629148	0.00104396	HOXD4	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr4_-_143226979_143226990	0.000853549	HOXD4	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr18_-_61311485_61311532	0.000655755	HOXD4	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
