hg19_v2_chr11_+_62186498_62186515	0.471622	FOXA3_FOXC2	ENST00000278282.2|SCGB1A1|ENSG00000149021.2|secretoglobin, family 1A, member 1 (uteroglobin)
hg19_v2_chr8_+_97597148_97597173	0.360825	FOXA3_FOXC2	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr17_-_26695013_26695033	0.341432	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr12_-_57328187_57328195	0.338724	FOXA3_FOXC2	ENST00000293502.1|SDR9C7|ENSG00000170426.1|short chain dehydrogenase/reductase family 9C, member 7
hg19_v2_chr8_+_101349823_101349862	0.330287	FOXA3_FOXC2	ENST00000519566.1|KB-1991G8.1|ENSG00000253217.1|KB-1991G8.1
hg19_v2_chr3_-_193096600_193096632	0.313305	FOXA3_FOXC2	ENST00000446087.1|ATP13A5|ENSG00000187527.6|ATPase type 13A5 	ENST00000342358.4|ATP13A5|ENSG00000187527.6|ATPase type 13A5
hg19_v2_chr17_-_77967433_77967526	0.311614	FOXA3_FOXC2	ENST00000571872.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr12_+_28605426_28605475	0.271531	FOXA3_FOXC2	ENST00000542801.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr15_+_38964048_38964101	0.262791	FOXA3_FOXC2	ENST00000560203.1|RP11-275I4.2|ENSG00000259747.1|RP11-275I4.2	ENST00000557946.1|RP11-275I4.2|ENSG00000259747.1|RP11-275I4.2
hg19_v2_chr2_+_58655461_58655492	0.24724	FOXA3_FOXC2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr2_-_87248975_87248975	0.215883	FOXA3_FOXC2	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chr1_+_152486950_152486978	0.206701	FOXA3_FOXC2	ENST00000368790.3|CRCT1|ENSG00000169509.5|cysteine-rich C-terminal 1
hg19_v2_chr5_+_60933634_60933637	0.203141	FOXA3_FOXC2	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr8_-_30002179_30002202	0.201277	FOXA3_FOXC2	ENST00000320542.3|MBOAT4|ENSG00000177669.3|membrane bound O-acyltransferase domain containing 4
hg19_v2_chr12_+_59989918_59989965	0.19827	FOXA3_FOXC2	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr7_+_142829162_142829176	0.186624	FOXA3_FOXC2	ENST00000291009.3|PIP|ENSG00000159763.3|prolactin-induced protein
hg19_v2_chr18_+_61575200_61575230	0.175974	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr1_+_174933899_174933955	0.169696	FOXA3_FOXC2	ENST00000367688.3|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr12_+_96588279_96588323	0.169074	FOXA3_FOXC2	ENST00000552142.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr18_+_68002675_68002675	0.160795	FOXA3_FOXC2	ENST00000584919.1|RP11-41O4.1|ENSG00000266258.1|Uncharacterized protein
hg19_v2_chr1_+_239882842_239882850	0.160397	FOXA3_FOXC2	ENST00000448020.1|CHRM3|ENSG00000133019.7|cholinergic receptor, muscarinic 3
hg19_v2_chr2_-_175711924_175711944	0.160244	FOXA3_FOXC2	ENST00000444573.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr16_-_67597789_67597861	0.159975	FOXA3_FOXC2	ENST00000605277.1|CTD-2012K14.6|ENSG00000261386.2|CTD-2012K14.6
hg19_v2_chr17_-_39150385_39150417	0.159777	FOXA3_FOXC2	ENST00000391586.1|KRTAP3-3|ENSG00000212899.1|keratin associated protein 3-3
hg19_v2_chr5_+_133859996_133860046	0.159275	FOXA3_FOXC2	ENST00000512386.1|PHF15|ENSG00000043143.16|jade family PHD finger 2
hg19_v2_chr5_+_40841276_40841312	0.154216	FOXA3_FOXC2	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr10_+_124739911_124739957	0.153369	FOXA3_FOXC2	ENST00000405485.1|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr5_-_137674000_137674044	0.151467	FOXA3_FOXC2	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr14_-_94789663_94789731	0.150036	FOXA3_FOXC2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chr7_+_151791074_151791083	0.149537	FOXA3_FOXC2	ENST00000447796.1|GALNT11|ENSG00000178234.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
hg19_v2_chr2_+_20650796_20650830	0.149339	FOXA3_FOXC2	ENST00000448241.1|AC023137.2|ENSG00000228950.1|AC023137.2
hg19_v2_chr4_+_76871883_76871883	0.148566	FOXA3_FOXC2	ENST00000599764.1|AC110615.1|ENSG00000268788.1|Uncharacterized protein
hg19_v2_chr13_+_95364963_95364978	0.147595	FOXA3_FOXC2	ENST00000438290.2|SOX21-AS1|ENSG00000227640.2|SOX21 antisense RNA 1 (head to head)
hg19_v2_chr3_-_187455680_187455732	0.140974	FOXA3_FOXC2	ENST00000438077.1|BCL6|ENSG00000113916.13|B-cell CLL/lymphoma 6
hg19_v2_chr9_+_116343192_116343225	0.140252	FOXA3_FOXC2	ENST00000471324.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr3_-_71114066_71114114	0.136871	FOXA3_FOXC2	ENST00000485326.2|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr4_-_164534657_164534701	0.13306	FOXA3_FOXC2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr12_-_12714006_12714021	0.132757	FOXA3_FOXC2	ENST00000541207.1|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr15_+_69857515_69857531	0.132577	FOXA3_FOXC2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr5_+_125706998_125707018	0.131276	FOXA3_FOXC2	ENST00000506445.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr15_+_69854027_69854062	0.129814	FOXA3_FOXC2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr1_+_104159999_104160068	0.107631	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr13_+_50589390_50589543	0.107337	FOXA3_FOXC2	ENST00000360473.4|KCNRG|ENSG00000198553.4|potassium channel regulator 	ENST00000312942.1|KCNRG|ENSG00000198553.4|potassium channel regulator
hg19_v2_chr1_+_101361782_101361810	0.105019	FOXA3_FOXC2	ENST00000357650.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr7_+_129906660_129906667	0.103012	FOXA3_FOXC2	ENST00000222481.4|CPA2|ENSG00000158516.7|carboxypeptidase A2 (pancreatic)
hg19_v2_chr7_+_95115210_95115217	0.102755	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr7_+_151791037_151791060	0.101566	FOXA3_FOXC2	ENST00000419245.1|GALNT11|ENSG00000178234.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
hg19_v2_chr18_+_59415396_59415427	0.100736	FOXA3_FOXC2	ENST00000567801.1|RP11-1096D5.1|ENSG00000260440.1|RP11-1096D5.1
hg19_v2_chr7_+_134832808_134832879	0.0958309	FOXA3_FOXC2	ENST00000275767.3|TMEM140|ENSG00000146859.6|transmembrane protein 140
hg19_v2_chr3_-_105588231_105588396	0.0950274	FOXA3_FOXC2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr4_+_124571409_124571447	0.0944615	FOXA3_FOXC2	ENST00000514823.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000511919.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000508111.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091
hg19_v2_chr4_-_153303658_153303669	0.0943023	FOXA3_FOXC2	ENST00000296555.5|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr17_+_72426891_72427052	0.0941105	FOXA3_FOXC2	ENST00000392627.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr21_+_17791648_17791775	0.0924149	FOXA3_FOXC2	ENST00000602892.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000418813.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000435697.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr12_-_71551652_71551679	0.0924099	FOXA3_FOXC2	ENST00000546561.1|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr4_+_57138437_57138570	0.0919612	FOXA3_FOXC2	ENST00000504228.1|KIAA1211|ENSG00000109265.8|KIAA1211 	ENST00000541073.1|KIAA1211|ENSG00000109265.8|KIAA1211
hg19_v2_chr21_+_17791838_17791869	0.0915843	FOXA3_FOXC2	ENST00000453910.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr15_+_75335604_75335633	0.0896513	FOXA3_FOXC2	ENST00000563393.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr7_+_28452130_28452154	0.0896279	FOXA3_FOXC2	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr9_+_131062367_131062367	0.0893188	FOXA3_FOXC2	ENST00000601297.1|AL359091.2|ENSG00000268211.1|CDNA: FLJ21673 fis, clone COL09042; HCG2036511; Uncharacterized protein
hg19_v2_chr2_+_220042933_220042985	0.0891659	FOXA3_FOXC2	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr12_-_53207842_53207907	0.088926	FOXA3_FOXC2	ENST00000458244.2|KRT4|ENSG00000170477.8|keratin 4
hg19_v2_chr4_+_165675269_165675289	0.0870464	FOXA3_FOXC2	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr1_-_149859466_149859521	0.0867794	FOXA3_FOXC2	ENST00000331128.3|HIST2H2AB|ENSG00000184270.3|histone cluster 2, H2ab
hg19_v2_chr17_-_26694979_26695007	0.0856869	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr6_-_41715128_41715142	0.0836149	FOXA3_FOXC2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr2_+_175260514_175260536	0.0835558	FOXA3_FOXC2	ENST00000424069.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000427038.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr19_-_36019123_36019253	0.083504	FOXA3_FOXC2	ENST00000588674.1|SBSN|ENSG00000189001.6|suprabasin 	ENST00000452271.2|SBSN|ENSG00000189001.6|suprabasin 	ENST00000518157.1|SBSN|ENSG00000189001.6|suprabasin
hg19_v2_chr4_-_87028478_87028514	0.0830703	FOXA3_FOXC2	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr4_-_140223670_140223705	0.0819922	FOXA3_FOXC2	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chrX_-_15402498_15402515	0.079721	FOXA3_FOXC2	ENST00000297904.3|FIGF|ENSG00000165197.4|c-fos induced growth factor (vascular endothelial growth factor D)
hg19_v2_chr14_+_20215587_20215587	0.0783383	FOXA3_FOXC2	ENST00000331723.1|OR4Q3|ENSG00000182652.1|olfactory receptor, family 4, subfamily Q, member 3
hg19_v2_chr9_-_20382446_20382493	0.0777279	FOXA3_FOXC2	ENST00000380321.1|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr18_+_47088401_47088457	0.0776923	FOXA3_FOXC2	ENST00000261292.4|LIPG|ENSG00000101670.7|lipase, endothelial 	ENST00000427224.2|LIPG|ENSG00000101670.7|lipase, endothelial 	ENST00000580036.1|LIPG|ENSG00000101670.7|lipase, endothelial
hg19_v2_chr4_-_74486109_74486166	0.0774189	FOXA3_FOXC2	ENST00000395777.2|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr1_-_120354079_120354283	0.0771145	FOXA3_FOXC2	ENST00000354219.1|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000369401.4|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4 	ENST00000256585.5|REG4|ENSG00000134193.10|regenerating islet-derived family, member 4
hg19_v2_chr9_-_95186739_95186763	0.07687	FOXA3_FOXC2	ENST00000375550.4|OMD|ENSG00000127083.7|osteomodulin
hg19_v2_chr8_+_52730143_52730143	0.0765904	FOXA3_FOXC2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr10_+_105314881_105314989	0.0765776	FOXA3_FOXC2	ENST00000437579.1|NEURL|ENSG00000107954.6|neuralized E3 ubiquitin protein ligase 1
hg19_v2_chr5_+_95998714_95998744	0.0754798	FOXA3_FOXC2	ENST00000506811.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000514055.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr11_-_116708302_116708347	0.0743208	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr1_+_154540246_154540260	0.0736913	FOXA3_FOXC2	ENST00000368476.3|CHRNB2|ENSG00000160716.4|cholinergic receptor, nicotinic, beta 2 (neuronal)
hg19_v2_chr1_+_12806141_12806199	0.0732501	FOXA3_FOXC2	ENST00000288048.5|C1orf158|ENSG00000157330.5|chromosome 1 open reading frame 158
hg19_v2_chrX_+_24167746_24167811	0.0722109	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr10_-_75168071_75168165	0.0720454	FOXA3_FOXC2	ENST00000394847.3|ANXA7|ENSG00000138279.11|annexin A7
hg19_v2_chr1_-_146696901_146696974	0.071539	FOXA3_FOXC2	ENST00000369272.3|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5 	ENST00000441068.2|FMO5|ENSG00000131781.8|flavin containing monooxygenase 5
hg19_v2_chr17_+_8924837_8924872	0.0714768	FOXA3_FOXC2	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr4_-_186456652_186456668	0.0709545	FOXA3_FOXC2	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr2_-_21266816_21266849	0.0708325	FOXA3_FOXC2	ENST00000399256.4|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr1_-_179851611_179851730	0.0705958	FOXA3_FOXC2	ENST00000610272.1|RP11-533E19.7|ENSG00000272906.1|RP11-533E19.7
hg19_v2_chr10_-_63995871_63996022	0.0689874	FOXA3_FOXC2	ENST00000315289.2|RTKN2|ENSG00000182010.6|rhotekin 2
hg19_v2_chr2_-_208030295_208030332	0.0684035	FOXA3_FOXC2	ENST00000458272.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr11_-_108464321_108464380	0.0677775	FOXA3_FOXC2	ENST00000265843.4|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr10_-_4285923_4286104	0.0671197	FOXA3_FOXC2	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr20_+_9049742_9049765	0.0671181	FOXA3_FOXC2	ENST00000437503.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr12_+_27849378_27849428	0.0667996	FOXA3_FOXC2	ENST00000310791.2|REP15|ENSG00000174236.2|RAB15 effector protein
hg19_v2_chr12_-_76879852_76879888	0.0658345	FOXA3_FOXC2	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr12_+_58087738_58087891	0.0657821	FOXA3_FOXC2	ENST00000552285.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr4_-_140223614_140223668	0.0657304	FOXA3_FOXC2	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr18_-_25616519_25616549	0.0653098	FOXA3_FOXC2	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr3_+_69985792_69985874	0.0652824	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr2_-_172290482_172290596	0.0646343	FOXA3_FOXC2	ENST00000442541.1|METTL8|ENSG00000123600.14|methyltransferase like 8 	ENST00000392599.2|METTL8|ENSG00000123600.14|methyltransferase like 8 	ENST00000375258.4|METTL8|ENSG00000123600.14|methyltransferase like 8
hg19_v2_chr12_-_21928515_21928544	0.0640749	FOXA3_FOXC2	ENST00000537950.1|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr1_+_172389821_172389833	0.0634527	FOXA3_FOXC2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr20_+_11898507_11898565	0.0626774	FOXA3_FOXC2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr2_-_46844242_46844258	0.062442	FOXA3_FOXC2	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr1_+_40974431_40974447	0.0623064	FOXA3_FOXC2	ENST00000296380.4|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000432259.1|EXO5|ENSG00000164002.7|exonuclease 5 	ENST00000418186.1|EXO5|ENSG00000164002.7|exonuclease 5
hg19_v2_chr7_-_111424462_111424496	0.0622167	FOXA3_FOXC2	ENST00000437129.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr4_+_71587669_71587752	0.0615453	FOXA3_FOXC2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr5_+_61708488_61708578	0.0612112	FOXA3_FOXC2	ENST00000505902.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr2_-_145275828_145275981	0.0608439	FOXA3_FOXC2	ENST00000392861.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409211.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr5_+_95385819_95385852	0.0607757	FOXA3_FOXC2	ENST00000507997.1|RP11-254I22.1|ENSG00000250551.1|RP11-254I22.1
hg19_v2_chr11_-_107582775_107582788	0.0607141	FOXA3_FOXC2	ENST00000305991.2|SLN|ENSG00000170290.3|sarcolipin
hg19_v2_chr1_-_223308098_223308225	0.0606399	FOXA3_FOXC2	ENST00000342210.6|TLR5|ENSG00000187554.7|toll-like receptor 5
hg19_v2_chr4_-_88450372_88450424	0.0602575	FOXA3_FOXC2	ENST00000543631.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr6_-_135818368_135818386	0.0601651	FOXA3_FOXC2	ENST00000367798.2|AHI1|ENSG00000135541.16|Abelson helper integration site 1
hg19_v2_chr7_+_73242490_73242532	0.0599731	FOXA3_FOXC2	ENST00000431918.1|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr1_+_43855545_43855557	0.0590761	FOXA3_FOXC2	ENST00000372450.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse) 	ENST00000310739.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr15_+_58430368_58430401	0.0588834	FOXA3_FOXC2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chrX_+_107288239_107288259	0.0582526	FOXA3_FOXC2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr4_+_79567233_79567248	0.0581579	FOXA3_FOXC2	ENST00000514130.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr5_+_137673945_137673961	0.0576284	FOXA3_FOXC2	ENST00000513056.1|FAM53C|ENSG00000120709.6|family with sequence similarity 53, member C 	ENST00000511276.1|FAM53C|ENSG00000120709.6|family with sequence similarity 53, member C
hg19_v2_chr11_-_46615498_46615675	0.0575828	FOXA3_FOXC2	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr1_-_149459549_149459549	0.0569536	FOXA3_FOXC2	ENST00000369175.3|FAM72C|ENSG00000203817.5|family with sequence similarity 72, member C
hg19_v2_chr2_-_175711978_175712109	0.0569322	FOXA3_FOXC2	ENST00000409089.2|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr2_+_28974531_28974551	0.0565327	FOXA3_FOXC2	ENST00000420282.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr4_-_71532668_71532695	0.0562008	FOXA3_FOXC2	ENST00000510437.1|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr2_+_128175997_128176020	0.0559303	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chrX_+_107288197_107288212	0.0557897	FOXA3_FOXC2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr7_-_22259845_22259864	0.0557486	FOXA3_FOXC2	ENST00000420196.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr8_+_104384616_104384661	0.0551807	FOXA3_FOXC2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr3_+_132316081_132316102	0.0547743	FOXA3_FOXC2	ENST00000249887.2|ACKR4|ENSG00000129048.6|atypical chemokine receptor 4
hg19_v2_chr20_-_55841662_55841736	0.0543013	FOXA3_FOXC2	ENST00000395863.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7 	ENST00000450594.2|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr3_+_119316721_119316739	0.054033	FOXA3_FOXC2	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr12_-_21927736_21927768	0.0532855	FOXA3_FOXC2	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr2_-_145275228_145275464	0.0530017	FOXA3_FOXC2	ENST00000427902.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409487.3|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000470879.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000435831.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr17_-_39140549_39140579	0.0522888	FOXA3_FOXC2	ENST00000377755.4|KRT40|ENSG00000204889.6|keratin 40
hg19_v2_chr3_-_71294304_71294332	0.0519367	FOXA3_FOXC2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr4_+_110769258_110769358	0.0518582	FOXA3_FOXC2	ENST00000594814.1|LRIT3|ENSG00000183423.7|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
hg19_v2_chr15_+_59910132_59910144	0.0513983	FOXA3_FOXC2	ENST00000559200.1|GCNT3|ENSG00000140297.8|glucosaminyl (N-acetyl) transferase 3, mucin type
hg19_v2_chr1_-_152332480_152332484	0.0509519	FOXA3_FOXC2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr17_-_29641104_29641130	0.0505606	FOXA3_FOXC2	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr1_+_159141397_159141549	0.049905	FOXA3_FOXC2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr11_-_85397167_85397320	0.0498043	FOXA3_FOXC2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr14_-_99737822_99737861	0.0487771	FOXA3_FOXC2	ENST00000345514.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein) 	ENST00000443726.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr15_+_59665194_59665232	0.0486887	FOXA3_FOXC2	ENST00000560394.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr3_+_69985734_69985754	0.0476597	FOXA3_FOXC2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr10_-_71176623_71176638	0.0473921	FOXA3_FOXC2	ENST00000373306.4|TACR2|ENSG00000075073.10|tachykinin receptor 2
hg19_v2_chr6_-_88875628_88875645	0.0472469	FOXA3_FOXC2	ENST00000551417.1|CNR1|ENSG00000118432.11|cannabinoid receptor 1 (brain)
hg19_v2_chr17_+_7487146_7487211	0.0466941	FOXA3_FOXC2	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr6_+_10528560_10528589	0.0443711	FOXA3_FOXC2	ENST00000379597.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr10_-_31288398_31288455	0.0443542	FOXA3_FOXC2	ENST00000538351.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr4_-_186456766_186456794	0.0442972	FOXA3_FOXC2	ENST00000284771.6|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr14_+_23299088_23299258	0.0440517	FOXA3_FOXC2	ENST00000355151.5|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397496.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555345.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000432849.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000553711.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556465.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397505.2|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000557221.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000311892.6|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556840.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555536.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52
hg19_v2_chr2_-_175260368_175260450	0.0433047	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr1_+_104293028_104293028	0.0431126	FOXA3_FOXC2	ENST00000370079.3|AMY1C|ENSG00000187733.6|amylase, alpha 1C (salivary)
hg19_v2_chr4_-_174256276_174256303	0.0413521	FOXA3_FOXC2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr8_-_133772870_133772881	0.0412717	FOXA3_FOXC2	ENST00000522334.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000519016.1|TMEM71|ENSG00000165071.10|transmembrane protein 71
hg19_v2_chr2_+_145425534_145425557	0.0412418	FOXA3_FOXC2	ENST00000432608.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597655.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000598659.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000600679.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000601277.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000451027.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000445791.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596540.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596230.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000594471.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000598248.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597469.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000431734.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000595686.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr5_+_135468516_135468621	0.0408404	FOXA3_FOXC2	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr16_-_48281305_48281419	0.0407022	FOXA3_FOXC2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr6_-_26056695_26056701	0.0406607	FOXA3_FOXC2	ENST00000343677.2|HIST1H1C|ENSG00000187837.2|histone cluster 1, H1c
hg19_v2_chr12_+_72080253_72080293	0.0405547	FOXA3_FOXC2	ENST00000549735.1|TMEM19|ENSG00000139291.9|transmembrane protein 19
hg19_v2_chr16_+_77233294_77233341	0.0404596	FOXA3_FOXC2	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr16_+_84801852_84801877	0.0397872	FOXA3_FOXC2	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr10_+_80008505_80008616	0.0392822	FOXA3_FOXC2	ENST00000434974.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856 	ENST00000423770.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856 	ENST00000432742.1|LINC00856|ENSG00000230417.6|long intergenic non-protein coding RNA 856
hg19_v2_chr17_-_66951382_66951411	0.0389894	FOXA3_FOXC2	ENST00000586539.1|ABCA8|ENSG00000141338.9|ATP-binding cassette, sub-family A (ABC1), member 8
hg19_v2_chr15_+_59664884_59664903	0.0389357	FOXA3_FOXC2	ENST00000558348.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr2_-_220042825_220042898	0.0383329	FOXA3_FOXC2	ENST00000409789.1|CNPPD1|ENSG00000115649.11|cyclin Pas1/PHO80 domain containing 1
hg19_v2_chr4_+_172734548_172734654	0.0383137	FOXA3_FOXC2	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr11_+_20044096_20044116	0.0378335	FOXA3_FOXC2	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr2_+_196521845_196521869	0.0377546	FOXA3_FOXC2	ENST00000359634.5|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10 	ENST00000412905.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr9_-_28670283_28670283	0.0375262	FOXA3_FOXC2	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chr11_-_57158109_57158130	0.0375122	FOXA3_FOXC2	ENST00000525955.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000533605.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000311862.5|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)
hg19_v2_chrX_-_55020511_55020626	0.0374915	FOXA3_FOXC2	ENST00000375006.3|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 	ENST00000374992.2|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr21_-_32931290_32931341	0.0374741	FOXA3_FOXC2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr5_+_101569696_101569696	0.0373921	FOXA3_FOXC2	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr14_+_56584414_56584532	0.0373829	FOXA3_FOXC2	ENST00000559044.1|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr1_+_207277590_207277620	0.0370766	FOXA3_FOXC2	ENST00000367070.3|C4BPA|ENSG00000123838.6|complement component 4 binding protein, alpha
hg19_v2_chr9_+_103340354_103340367	0.0366211	FOXA3_FOXC2	ENST00000307584.5|MURC|ENSG00000170681.6|muscle-related coiled-coil protein
hg19_v2_chr8_+_19171128_19171182	0.0365002	FOXA3_FOXC2	ENST00000265807.3|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr4_+_148653206_148653219	0.0363645	FOXA3_FOXC2	ENST00000336498.3|ARHGAP10|ENSG00000071205.7|Rho GTPase activating protein 10
hg19_v2_chr13_-_40924439_40924445	0.0362884	FOXA3_FOXC2	ENST00000400432.3|RP11-172E9.2|ENSG00000230058.1|RP11-172E9.2
hg19_v2_chr12_-_92539614_92539673	0.036222	FOXA3_FOXC2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr12_-_49581152_49581241	0.0359306	FOXA3_FOXC2	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr3_+_119316689_119316710	0.0358581	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr10_-_50603497_50603497	0.0358445	FOXA3_FOXC2	ENST00000374139.2|DRGX|ENSG00000165606.4|dorsal root ganglia homeobox
hg19_v2_chr12_-_122018346_122018389	0.0354228	FOXA3_FOXC2	ENST00000377069.4|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr12_-_102591604_102591623	0.0352574	FOXA3_FOXC2	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr13_-_36429763_36429779	0.0350874	FOXA3_FOXC2	ENST00000379893.1|DCLK1|ENSG00000133083.10|doublecortin-like kinase 1
hg19_v2_chrX_+_135730373_135730399	0.0350781	FOXA3_FOXC2	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr4_+_15341442_15341589	0.034848	FOXA3_FOXC2	ENST00000397700.2|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000295297.4|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr7_+_106505912_106505931	0.0347579	FOXA3_FOXC2	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr1_+_43855560_43855640	0.0345727	FOXA3_FOXC2	ENST00000562955.1|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr14_+_23654525_23654545	0.0338546	FOXA3_FOXC2	ENST00000399910.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164 	ENST00000492621.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164
hg19_v2_chrX_+_135730297_135730352	0.0332997	FOXA3_FOXC2	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr3_+_159570722_159570733	0.0332361	FOXA3_FOXC2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr3_+_135741576_135741601	0.0332315	FOXA3_FOXC2	ENST00000334546.2|PPP2R3A|ENSG00000073711.6|protein phosphatase 2, regulatory subunit B'', alpha
hg19_v2_chr17_-_66951474_66951550	0.0324692	FOXA3_FOXC2	ENST00000269080.2|ABCA8|ENSG00000141338.9|ATP-binding cassette, sub-family A (ABC1), member 8
hg19_v2_chr11_-_18062335_18062335	0.0322186	FOXA3_FOXC2	ENST00000341556.2|TPH1|ENSG00000129167.5|tryptophan hydroxylase 1
hg19_v2_chr8_+_39806685_39806685	0.0320637	FOXA3_FOXC2	ENST00000389060.4|IDO2|ENSG00000188676.9|indoleamine 2,3-dioxygenase 2
hg19_v2_chr4_-_21950356_21950439	0.0318567	FOXA3_FOXC2	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chrX_+_23352133_23352229	0.0314161	FOXA3_FOXC2	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr8_-_133772794_133772840	0.0310999	FOXA3_FOXC2	ENST00000519187.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000523829.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000356838.3|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000377901.4|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000519304.1|TMEM71|ENSG00000165071.10|transmembrane protein 71
hg19_v2_chr14_+_21156915_21156943	0.0310601	FOXA3_FOXC2	ENST00000397990.4|ANG|ENSG00000214274.5|angiogenin, ribonuclease, RNase A family, 5 	ENST00000555597.1|RNASE4|ENSG00000258818.2|ribonuclease, RNase A family, 4
hg19_v2_chr6_-_131211534_131211564	0.0309136	FOXA3_FOXC2	ENST00000456097.2|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr15_+_58430567_58430589	0.0305812	FOXA3_FOXC2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr10_+_124739964_124739994	0.0305578	FOXA3_FOXC2	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr16_+_67381263_67381284	0.0305353	FOXA3_FOXC2	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr2_+_162272605_162272753	0.0303605	FOXA3_FOXC2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr14_-_80782219_80782250	0.0301027	FOXA3_FOXC2	ENST00000553594.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr11_-_108464465_108464507	0.0298609	FOXA3_FOXC2	ENST00000525344.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr12_+_21525818_21525862	0.0296861	FOXA3_FOXC2	ENST00000240652.3|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000542023.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000537593.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide
hg19_v2_chr2_-_161056802_161056815	0.0296458	FOXA3_FOXC2	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chrX_+_24167828_24167907	0.0291307	FOXA3_FOXC2	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr7_+_138943265_138943265	0.0290281	FOXA3_FOXC2	ENST00000483726.1|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr14_+_74034310_74034345	0.0279702	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr14_-_24664540_24664690	0.0278344	FOXA3_FOXC2	ENST00000530563.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528895.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000528669.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1 	ENST00000532632.1|TM9SF1|ENSG00000100926.10|transmembrane 9 superfamily member 1
hg19_v2_chr20_+_43935474_43935491	0.0277037	FOXA3_FOXC2	ENST00000372743.1|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like 	ENST00000372741.3|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like 	ENST00000343694.3|RBPJL|ENSG00000124232.6|recombination signal binding protein for immunoglobulin kappa J region-like
hg19_v2_chr6_+_26251835_26251879	0.0274842	FOXA3_FOXC2	ENST00000356350.2|HIST1H2BH|ENSG00000197459.2|histone cluster 1, H2bh
hg19_v2_chr20_+_31870927_31870969	0.0271742	FOXA3_FOXC2	ENST00000253354.1|BPIFB1|ENSG00000125999.6|BPI fold containing family B, member 1
hg19_v2_chr4_+_15376165_15376178	0.0267538	FOXA3_FOXC2	ENST00000382383.3|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000429690.1|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr3_+_50712672_50712703	0.0259151	FOXA3_FOXC2	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr1_-_43855444_43855478	0.0257253	FOXA3_FOXC2	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr6_-_112575838_112575849	0.0254154	FOXA3_FOXC2	ENST00000455073.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr3_+_158991025_158991083	0.0253265	FOXA3_FOXC2	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr3_-_186080012_186080030	0.0252895	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr4_-_71532339_71532377	0.0250002	FOXA3_FOXC2	ENST00000254801.4|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr2_+_28974603_28974617	0.0249615	FOXA3_FOXC2	ENST00000441461.1|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000358506.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr4_-_74486347_74486348	0.0249208	FOXA3_FOXC2	ENST00000342081.3|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr3_-_45957534_45957655	0.0248863	FOXA3_FOXC2	ENST00000536047.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr20_+_45338126_45338303	0.0246954	FOXA3_FOXC2	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr2_-_106054952_106054977	0.0246724	FOXA3_FOXC2	ENST00000336660.5|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393352.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000607522.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr6_-_161085291_161085308	0.0245756	FOXA3_FOXC2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr5_+_161494770_161494787	0.0245154	FOXA3_FOXC2	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr19_-_51141196_51141302	0.0233105	FOXA3_FOXC2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr1_+_18957500_18957623	0.0232952	FOXA3_FOXC2	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr22_-_30867973_30868036	0.0232353	FOXA3_FOXC2	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr4_+_74269956_74270025	0.0232072	FOXA3_FOXC2	ENST00000295897.4|ALB|ENSG00000163631.12|albumin 	ENST00000415165.2|ALB|ENSG00000163631.12|albumin 	ENST00000503124.1|ALB|ENSG00000163631.12|albumin 	ENST00000509063.1|ALB|ENSG00000163631.12|albumin 	ENST00000401494.3|ALB|ENSG00000163631.12|albumin
hg19_v2_chr21_-_15583165_15583170	0.0231682	FOXA3_FOXC2	ENST00000536861.1|LIPI|ENSG00000188992.7|lipase, member I
hg19_v2_chr16_+_73420942_73420962	0.0230771	FOXA3_FOXC2	ENST00000554640.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000562661.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000561875.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1
hg19_v2_chr18_+_3449330_3449411	0.0230099	FOXA3_FOXC2	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr14_-_23299009_23299029	0.0227003	FOXA3_FOXC2	ENST00000488800.1|SLC7A7|ENSG00000155465.14|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
hg19_v2_chr9_+_112852477_112852514	0.0223503	FOXA3_FOXC2	ENST00000480388.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr7_-_81399355_81399373	0.0221633	FOXA3_FOXC2	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr8_+_95907993_95908004	0.022081	FOXA3_FOXC2	ENST00000523378.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr6_+_142623758_142623795	0.0220503	FOXA3_FOXC2	ENST00000541199.1|GPR126|ENSG00000112414.10|G protein-coupled receptor 126 	ENST00000435011.2|GPR126|ENSG00000112414.10|G protein-coupled receptor 126
hg19_v2_chr14_+_58711539_58711627	0.0219643	FOXA3_FOXC2	ENST00000216455.4|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000412908.2|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000557508.1|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3
hg19_v2_chr9_+_70856397_70856397	0.0219305	FOXA3_FOXC2	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr7_-_81399438_81399514	0.0219248	FOXA3_FOXC2	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr4_-_186696425_186696452	0.0218245	FOXA3_FOXC2	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr16_+_67381289_67381306	0.0217737	FOXA3_FOXC2	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr7_+_106505696_106505798	0.0217551	FOXA3_FOXC2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr6_-_117747015_117747048	0.0216123	FOXA3_FOXC2	ENST00000368508.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase 	ENST00000368507.3|ROS1|ENSG00000047936.6|c-ros oncogene 1 , receptor tyrosine kinase
hg19_v2_chr12_+_58087901_58087947	0.021524	FOXA3_FOXC2	ENST00000315970.7|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000547079.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000439210.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389146.6|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000413095.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000551035.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000257966.8|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000435406.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000550372.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389142.5|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr4_+_86396321_86396392	0.0214506	FOXA3_FOXC2	ENST00000503995.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr18_-_52626622_52626739	0.0213933	FOXA3_FOXC2	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr15_-_40600111_40600166	0.0210849	FOXA3_FOXC2	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr12_-_7596735_7596781	0.0210141	FOXA3_FOXC2	ENST00000416109.2|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000396630.1|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000313599.3|CD163L1|ENSG00000177675.4|CD163 molecule-like 1
hg19_v2_chr4_-_186696515_186696542	0.020745	FOXA3_FOXC2	ENST00000456596.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000414724.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr2_+_46844290_46844384	0.0206293	FOXA3_FOXC2	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr4_+_88720698_88720733	0.0202402	FOXA3_FOXC2	ENST00000226284.5|IBSP|ENSG00000029559.5|integrin-binding sialoprotein
hg19_v2_chr8_+_11666649_11666765	0.0202393	FOXA3_FOXC2	ENST00000528643.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525777.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr1_+_200011711_200011752	0.020161	FOXA3_FOXC2	ENST00000544748.1|NR5A2|ENSG00000116833.9|nuclear receptor subfamily 5, group A, member 2
hg19_v2_chrX_-_20237059_20237081	0.0198529	FOXA3_FOXC2	ENST00000457145.1|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr9_+_67977438_67977438	0.0196532	FOXA3_FOXC2	ENST00000456982.1|RP11-195B21.3|ENSG00000155282.7|Protein LOC644249
hg19_v2_chr5_+_161495038_161495056	0.0195459	FOXA3_FOXC2	ENST00000393933.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr7_-_81635106_81635130	0.0194175	FOXA3_FOXC2	ENST00000443883.1|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr6_+_161123270_161123278	0.0194023	FOXA3_FOXC2	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr1_+_61548225_61548299	0.019327	FOXA3_FOXC2	ENST00000371187.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr6_+_146350267_146350419	0.0193196	FOXA3_FOXC2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr11_-_102401469_102401488	0.0192779	FOXA3_FOXC2	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr11_-_82708519_82708523	0.0190975	FOXA3_FOXC2	ENST00000534301.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr16_+_20775358_20775386	0.0190937	FOXA3_FOXC2	ENST00000440284.2|ACSM3|ENSG00000005187.7|acyl-CoA synthetase medium-chain family member 3
hg19_v2_chr4_+_184826418_184826522	0.0190063	FOXA3_FOXC2	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr6_+_47666275_47666296	0.0187837	FOXA3_FOXC2	ENST00000327753.3|GPR115|ENSG00000153294.7|G protein-coupled receptor 115 	ENST00000283303.2|GPR115|ENSG00000153294.7|G protein-coupled receptor 115
hg19_v2_chr1_+_179851176_179851197	0.0185896	FOXA3_FOXC2	ENST00000528443.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr9_-_37034028_37034157	0.018558	FOXA3_FOXC2	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr6_+_146350622_146350749	0.0182857	FOXA3_FOXC2	ENST00000507907.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr18_+_21032781_21032795	0.0182138	FOXA3_FOXC2	ENST00000339486.3|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr2_-_39456673_39456673	0.0180876	FOXA3_FOXC2	ENST00000378803.1|CDKL4|ENSG00000205111.4|cyclin-dependent kinase-like 4 	ENST00000395035.3|CDKL4|ENSG00000205111.4|cyclin-dependent kinase-like 4
hg19_v2_chr5_+_74807886_74807926	0.0179045	FOXA3_FOXC2	ENST00000514296.1|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr4_-_186696561_186696634	0.0178103	FOXA3_FOXC2	ENST00000445115.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000451701.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000457247.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000435480.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000425679.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000457934.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr15_-_66797172_66797221	0.0177145	FOXA3_FOXC2	ENST00000569438.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000569696.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000307961.6|RPL4|ENSG00000174444.10|ribosomal protein L4
hg19_v2_chr2_+_162165038_162165111	0.0175377	FOXA3_FOXC2	ENST00000437630.1|PSMD14|ENSG00000115233.7|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
hg19_v2_chr2_-_192711968_192711981	0.0174168	FOXA3_FOXC2	ENST00000304141.4|SDPR|ENSG00000168497.4|serum deprivation response
hg19_v2_chr17_-_29641084_29641103	0.0171974	FOXA3_FOXC2	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr17_-_39041479_39041501	0.0171746	FOXA3_FOXC2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr18_-_3874752_3874767	0.0170869	FOXA3_FOXC2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr12_+_59989791_59989874	0.017086	FOXA3_FOXC2	ENST00000552432.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr1_+_74701062_74701099	0.0168395	FOXA3_FOXC2	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr6_+_54172653_54172764	0.0167362	FOXA3_FOXC2	ENST00000370869.3|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen
hg19_v2_chr14_-_23526739_23526766	0.0165138	FOXA3_FOXC2	ENST00000397359.3|CDH24|ENSG00000139880.15|cadherin 24, type 2 	ENST00000487137.2|CDH24|ENSG00000139880.15|cadherin 24, type 2
hg19_v2_chr14_-_99737565_99737617	0.016332	FOXA3_FOXC2	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr7_-_111424506_111424539	0.0162834	FOXA3_FOXC2	ENST00000450156.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000494651.2|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr5_+_140787600_140787770	0.0161728	FOXA3_FOXC2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr7_-_117512264_117512281	0.0161091	FOXA3_FOXC2	ENST00000454375.1|CTTNBP2|ENSG00000077063.6|cortactin binding protein 2
hg19_v2_chr1_-_246357029_246357043	0.0158982	FOXA3_FOXC2	ENST00000391836.2|SMYD3|ENSG00000185420.14|SET and MYND domain containing 3
hg19_v2_chr3_+_137728842_137728952	0.0158868	FOXA3_FOXC2	ENST00000183605.5|CLDN18|ENSG00000066405.8|claudin 18
hg19_v2_chr20_+_33563206_33563206	0.0158283	FOXA3_FOXC2	ENST00000262873.7|MYH7B|ENSG00000078814.11|myosin, heavy chain 7B, cardiac muscle, beta
hg19_v2_chr3_+_35721182_35721277	0.0157183	FOXA3_FOXC2	ENST00000413378.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000417925.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr20_-_43150601_43150751	0.0155537	FOXA3_FOXC2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr1_+_29563011_29563151	0.0153909	FOXA3_FOXC2	ENST00000345512.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000373779.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000356870.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000323874.8|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000428026.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000460170.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U
hg19_v2_chr15_+_63188009_63188017	0.0153446	FOXA3_FOXC2	ENST00000557900.1|RP11-1069G10.2|ENSG00000259727.1|RP11-1069G10.2
hg19_v2_chr17_-_26733604_26733648	0.0150659	FOXA3_FOXC2	ENST00000584426.1|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1 	ENST00000584995.1|SLC46A1|ENSG00000076351.8|solute carrier family 46 (folate transporter), member 1
hg19_v2_chr1_-_43855479_43855486	0.0150374	FOXA3_FOXC2	ENST00000290663.6|MED8|ENSG00000159479.12|mediator complex subunit 8 	ENST00000372457.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr5_+_74807581_74807724	0.0148996	FOXA3_FOXC2	ENST00000241436.4|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa 	ENST00000352007.5|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr3_-_114343039_114343085	0.0143582	FOXA3_FOXC2	ENST00000481632.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr10_-_46030841_46030846	0.0143062	FOXA3_FOXC2	ENST00000453424.2|MARCH8|ENSG00000165406.11|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
hg19_v2_chr11_-_110561721_110561721	0.0141925	FOXA3_FOXC2	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr17_+_72427477_72427667	0.0137889	FOXA3_FOXC2	ENST00000342648.5|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C 	ENST00000481232.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chrX_+_105936982_105937024	0.0134983	FOXA3_FOXC2	ENST00000418562.1|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr10_-_75676400_75676400	0.0134352	FOXA3_FOXC2	ENST00000412307.2|C10orf55|ENSG00000222047.4|chromosome 10 open reading frame 55
hg19_v2_chr8_+_95908041_95908065	0.0132586	FOXA3_FOXC2	ENST00000396113.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 	ENST00000519136.1|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr20_+_9049682_9049710	0.0132501	FOXA3_FOXC2	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr7_+_86273218_86273242	0.013171	FOXA3_FOXC2	ENST00000361669.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr3_+_148447887_148447911	0.0131181	FOXA3_FOXC2	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr14_+_37126765_37126799	0.0130383	FOXA3_FOXC2	ENST00000402703.2|PAX9|ENSG00000198807.8|paired box 9
hg19_v2_chr17_+_4613776_4613792	0.0130231	FOXA3_FOXC2	ENST00000269260.2|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr3_+_57882024_57882045	0.0123142	FOXA3_FOXC2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr18_-_31803435_31803515	0.0122705	FOXA3_FOXC2	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr2_+_88047606_88047606	0.0119124	FOXA3_FOXC2	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr4_+_86396265_86396276	0.0118945	FOXA3_FOXC2	ENST00000395184.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr4_-_186682716_186682745	0.0117899	FOXA3_FOXC2	ENST00000445343.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr4_+_147096837_147096912	0.0117886	FOXA3_FOXC2	ENST00000296581.5|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000502781.1|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr1_-_167522982_167523017	0.0115002	FOXA3_FOXC2	ENST00000370509.4|CREG1|ENSG00000143162.7|cellular repressor of E1A-stimulated genes 1
hg19_v2_chr6_-_112575912_112575931	0.0114172	FOXA3_FOXC2	ENST00000522006.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000230538.7|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000519932.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr10_+_124320195_124320216	0.0113094	FOXA3_FOXC2	ENST00000359586.6|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr1_-_150602035_150602095	0.0110098	FOXA3_FOXC2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr2_-_207078086_207078106	0.0109683	FOXA3_FOXC2	ENST00000442134.1|GPR1|ENSG00000183671.8|G protein-coupled receptor 1
hg19_v2_chr18_-_53070913_53070945	0.0102914	FOXA3_FOXC2	ENST00000568186.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564228.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr5_-_115872124_115872139	0.0102373	FOXA3_FOXC2	ENST00000515009.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr16_-_86542455_86542500	0.0100883	FOXA3_FOXC2	ENST00000595886.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000597578.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000593604.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr12_+_40787194_40787197	0.00994705	FOXA3_FOXC2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr4_-_186696636_186696676	0.00985318	FOXA3_FOXC2	ENST00000444771.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr2_+_28974668_28974729	0.00983813	FOXA3_FOXC2	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr2_+_179318295_179318295	0.00975008	FOXA3_FOXC2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr1_+_172389836_172389874	0.0096914	FOXA3_FOXC2	ENST00000460397.2|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr9_+_34957477_34957489	0.00966677	FOXA3_FOXC2	ENST00000544237.1|KIAA1045|ENSG00000122733.11|KIAA1045
hg19_v2_chr19_-_47157914_47157980	0.00956445	FOXA3_FOXC2	ENST00000300875.4|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr10_+_71561649_71561703	0.00953815	FOXA3_FOXC2	ENST00000398978.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000354547.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000357811.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr17_+_7476136_7476160	0.00922762	FOXA3_FOXC2	ENST00000582169.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578754.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578495.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000293831.8|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000380512.5|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000585024.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000583802.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577269.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000584784.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000582746.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr7_-_115670804_115670867	0.00916372	FOXA3_FOXC2	ENST00000320239.7|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr14_+_56585048_56585150	0.00913922	FOXA3_FOXC2	ENST00000267460.4|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr10_+_70847852_70847874	0.0090299	FOXA3_FOXC2	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr10_-_49482907_49482941	0.00884807	FOXA3_FOXC2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr6_-_168479839_168479904	0.00881616	FOXA3_FOXC2	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr19_-_46088068_46088100	0.00880636	FOXA3_FOXC2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr19_-_50380536_50380618	0.00879549	FOXA3_FOXC2	ENST00000391832.3|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000391834.2|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000344175.5|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich)
hg19_v2_chr5_-_59481406_59481425	0.00872655	FOXA3_FOXC2	ENST00000546160.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr12_-_122018114_122018137	0.00857664	FOXA3_FOXC2	ENST00000539394.1|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr3_-_107941230_107941417	0.00838504	FOXA3_FOXC2	ENST00000264538.3|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr10_+_105315102_105315137	0.00798202	FOXA3_FOXC2	ENST00000369777.2|NEURL|ENSG00000107954.6|neuralized E3 ubiquitin protein ligase 1
hg19_v2_chr17_-_39183452_39183468	0.0079218	FOXA3_FOXC2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr15_-_40600026_40600061	0.0077636	FOXA3_FOXC2	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr7_-_121784285_121784350	0.00767676	FOXA3_FOXC2	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chrX_-_70329118_70329194	0.007666	FOXA3_FOXC2	ENST00000374188.3|IL2RG|ENSG00000147168.8|interleukin 2 receptor, gamma
hg19_v2_chr18_-_3874247_3874262	0.00763158	FOXA3_FOXC2	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr19_-_10679644_10679661	0.00732227	FOXA3_FOXC2	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr20_+_44035847_44035879	0.00723397	FOXA3_FOXC2	ENST00000372712.2|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr15_+_49462434_49462488	0.0071465	FOXA3_FOXC2	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr3_+_35721106_35721127	0.00698874	FOXA3_FOXC2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr15_+_75940218_75940298	0.00691134	FOXA3_FOXC2	ENST00000308527.5|SNX33|ENSG00000173548.8|sorting nexin 33
hg19_v2_chr15_+_71185148_71185214	0.00680366	FOXA3_FOXC2	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr12_+_48516463_48516503	0.0067843	FOXA3_FOXC2	ENST00000546465.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle
hg19_v2_chr17_-_44270133_44270207	0.00660468	FOXA3_FOXC2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr22_-_39268308_39268319	0.00647177	FOXA3_FOXC2	ENST00000407418.3|CBX6|ENSG00000183741.7|chromobox homolog 6
hg19_v2_chr8_+_102064237_102064282	0.00630717	FOXA3_FOXC2	ENST00000514926.1|RP11-302J23.1|ENSG00000248599.1|RP11-302J23.1
hg19_v2_chr3_-_133969673_133969735	0.00616637	FOXA3_FOXC2	ENST00000427044.2|RYK|ENSG00000163785.8|receptor-like tyrosine kinase
hg19_v2_chr2_-_161056762_161056799	0.0060895	FOXA3_FOXC2	ENST00000428609.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409967.2|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr4_-_70080449_70080449	0.00592096	FOXA3_FOXC2	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chr4_-_89205879_89205921	0.0058502	FOXA3_FOXC2	ENST00000608933.1|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K 	ENST00000315194.4|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K 	ENST00000514204.1|PPM1K|ENSG00000163644.10|protein phosphatase, Mg2+/Mn2+ dependent, 1K
hg19_v2_chr10_+_124320156_124320181	0.00549877	FOXA3_FOXC2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr14_-_25479811_25479846	0.00548039	FOXA3_FOXC2	ENST00000550887.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr17_-_41322332_41322420	0.0054723	FOXA3_FOXC2	ENST00000590740.1|RP11-242D8.1|ENSG00000267002.1|RP11-242D8.1
hg19_v2_chr4_+_118955500_118955612	0.0054177	FOXA3_FOXC2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr1_+_40862501_40862512	0.00521618	FOXA3_FOXC2	ENST00000539317.1|SMAP2|ENSG00000084070.7|small ArfGAP2
hg19_v2_chr3_-_168864315_168864356	0.00507568	FOXA3_FOXC2	ENST00000475754.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus 	ENST00000484519.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus
hg19_v2_chr5_-_159846399_159846412	0.00506515	FOXA3_FOXC2	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr11_-_66112555_66112601	0.00501956	FOXA3_FOXC2	ENST00000425825.2|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1 	ENST00000359957.3|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1
hg19_v2_chr1_+_246729815_246729841	0.00495977	FOXA3_FOXC2	ENST00000366511.1|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr1_+_179851410_179851447	0.00494312	FOXA3_FOXC2	ENST00000271583.3|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1 	ENST00000606911.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr8_+_55528627_55528631	0.00471045	FOXA3_FOXC2	ENST00000220676.1|RP1|ENSG00000104237.6|retinitis pigmentosa 1 (autosomal dominant)
hg19_v2_chr6_-_24666819_24666974	0.00469983	FOXA3_FOXC2	ENST00000341060.3|TDP2|ENSG00000111802.9|tyrosyl-DNA phosphodiesterase 2
hg19_v2_chr3_-_99833333_99833357	0.00461465	FOXA3_FOXC2	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr1_-_201096312_201096312	0.00449341	FOXA3_FOXC2	ENST00000449188.2|ASCL5|ENSG00000232237.2|achaete-scute family bHLH transcription factor 5
hg19_v2_chr10_-_126849626_126849633	0.00441283	FOXA3_FOXC2	ENST00000530884.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr5_-_156772729_156772774	0.00423856	FOXA3_FOXC2	ENST00000312349.4|FNDC9|ENSG00000172568.4|fibronectin type III domain containing 9
hg19_v2_chr4_+_146403912_146403972	0.00423244	FOXA3_FOXC2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr20_+_9146969_9147005	0.0041935	FOXA3_FOXC2	ENST00000416836.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr1_-_177939041_177939053	0.00408027	FOXA3_FOXC2	ENST00000308284.6|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr1_-_177939348_177939395	0.00380956	FOXA3_FOXC2	ENST00000464631.2|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr14_-_106791536_106791536	0.00337369	FOXA3_FOXC2	ENST00000390613.2|IGHV3-30|ENSG00000211953.2|immunoglobulin heavy variable 3-30
hg19_v2_chr5_+_40841410_40841489	0.00332235	FOXA3_FOXC2	ENST00000381677.3|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr6_+_146348782_146348809	0.00298775	FOXA3_FOXC2	ENST00000361719.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000392299.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr17_-_39203519_39203568	0.00258698	FOXA3_FOXC2	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr10_+_123923105_123923160	0.00250327	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr17_-_65235916_65235949	0.00245348	FOXA3_FOXC2	ENST00000579861.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr15_+_49462397_49462430	0.00244511	FOXA3_FOXC2	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr12_+_94071129_94071175	0.00203374	FOXA3_FOXC2	ENST00000552983.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000332896.3|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000552033.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000548483.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr5_-_169725231_169725264	0.00177993	FOXA3_FOXC2	ENST00000046794.5|LCP2|ENSG00000043462.7|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
hg19_v2_chr8_-_28243934_28243993	0.00165777	FOXA3_FOXC2	ENST00000521185.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000520290.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000344423.5|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr9_+_71986182_71986182	0.0015616	FOXA3_FOXC2	ENST00000303068.7|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr6_+_146348810_146348918	0.00144449	FOXA3_FOXC2	ENST00000492807.2|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr15_+_76016293_76016321	0.00107008	FOXA3_FOXC2	ENST00000332145.2|ODF3L1|ENSG00000182950.2|outer dense fiber of sperm tails 3-like 1
hg19_v2_chr17_-_202579_202633	0.000616629	FOXA3_FOXC2	ENST00000577079.1|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000331302.7|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000536489.2|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains)
hg19_v2_chr8_-_23261589_23261753	0.000593698	FOXA3_FOXC2	ENST00000524168.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000523833.2|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000519243.1|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2 	ENST00000389131.3|LOXL2|ENSG00000134013.11|lysyl oxidase-like 2
hg19_v2_chr1_-_154150651_154150691	0.000542929	FOXA3_FOXC2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr8_+_19171196_19171216	0.000453972	FOXA3_FOXC2	ENST00000518040.1|SH2D4A|ENSG00000104611.7|SH2 domain containing 4A
hg19_v2_chr1_+_87797351_87797441	0.000414468	FOXA3_FOXC2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr2_+_166150541_166150594	0.000301887	FOXA3_FOXC2	ENST00000283256.6|SCN2A|ENSG00000136531.9|sodium channel, voltage-gated, type II, alpha subunit
hg19_v2_chr13_-_99910620_99910660	0.000251596	FOXA3_FOXC2	ENST00000416594.1|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr1_-_150669604_150669643	0.000225376	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
