hg19_v2_chr3_-_129375556_129375570	1.18676	FOXA2_FOXJ3	ENST00000510323.1|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr3_+_164924716_164924750	0.712594	FOXA2_FOXJ3	ENST00000470138.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2	ENST00000498616.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2
hg19_v2_chr12_-_12714025_12714064	0.696107	FOXA2_FOXJ3	ENST00000539940.1|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr1_+_66796401_66796423	0.642922	FOXA2_FOXJ3	ENST00000528771.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr1_+_203765437_203765437	0.615455	FOXA2_FOXJ3	ENST00000550078.1|ZBED6|ENSG00000257315.1|zinc finger, BED-type containing 6
hg19_v2_chr7_+_74191613_74191613	0.596933	FOXA2_FOXJ3	ENST00000442021.2|NCF1|ENSG00000158517.9|neutrophil cytosolic factor 1
hg19_v2_chr1_+_150488205_150488251	0.575266	FOXA2_FOXJ3	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr3_+_171561127_171561306	0.56887	FOXA2_FOXJ3	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr8_-_101321584_101321754	0.544496	FOXA2_FOXJ3	ENST00000523167.1|RNF19A|ENSG00000034677.7|ring finger protein 19A, RBR E3 ubiquitin protein ligase
hg19_v2_chr2_-_224702740_224702761	0.53389	FOXA2_FOXJ3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr12_-_12714006_12714021	0.48061	FOXA2_FOXJ3	ENST00000541207.1|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr4_-_76008706_76008878	0.468571	FOXA2_FOXJ3	ENST00000562355.1|RP11-44F21.5|ENSG00000260265.1|RP11-44F21.5	ENST00000563602.1|RP11-44F21.5|ENSG00000260265.1|RP11-44F21.5
hg19_v2_chr21_-_16374688_16374703	0.457536	FOXA2_FOXJ3	ENST00000411932.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr10_+_111985713_111985774	0.42733	FOXA2_FOXJ3	ENST00000239007.7|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chr3_+_69928256_69928385	0.412689	FOXA2_FOXJ3	ENST00000394355.2|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr14_+_38033252_38033405	0.408755	FOXA2_FOXJ3	ENST00000554829.1|RP11-356O9.1|ENSG00000258414.1|RP11-356O9.1
hg19_v2_chr5_+_159436120_159436176	0.403618	FOXA2_FOXJ3	ENST00000522793.1|TTC1|ENSG00000113312.6|tetratricopeptide repeat domain 1 	ENST00000231238.5|TTC1|ENSG00000113312.6|tetratricopeptide repeat domain 1
hg19_v2_chr16_-_21875424_21875424	0.396616	FOXA2_FOXJ3	ENST00000541674.1|NPIPB4|ENSG00000185864.12|nuclear pore complex interacting protein family, member B4
hg19_v2_chr2_+_149402989_149402989	0.388696	FOXA2_FOXJ3	ENST00000397424.2|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr12_-_102591604_102591623	0.382681	FOXA2_FOXJ3	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr2_-_191878681_191878823	0.382493	FOXA2_FOXJ3	ENST00000409465.1|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa
hg19_v2_chr2_-_175260368_175260450	0.381876	FOXA2_FOXJ3	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr1_+_45140400_45140427	0.379144	FOXA2_FOXJ3	ENST00000453711.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr12_-_76462713_76462773	0.368437	FOXA2_FOXJ3	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr5_-_36242119_36242381	0.365865	FOXA2_FOXJ3	ENST00000511088.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000282512.3|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000506945.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr11_+_34643600_34643750	0.358952	FOXA2_FOXJ3	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr17_-_49021974_49022074	0.351136	FOXA2_FOXJ3	ENST00000501718.2|RP11-700H6.1|ENSG00000247011.2|RP11-700H6.1
hg19_v2_chr8_-_80993010_80993073	0.347392	FOXA2_FOXJ3	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr2_-_128615517_128615523	0.337488	FOXA2_FOXJ3	ENST00000409698.1|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D
hg19_v2_chr4_+_117220016_117220016	0.334274	FOXA2_FOXJ3	ENST00000604093.1|MTRNR2L13|ENSG00000270394.1|MT-RNR2-like 13 (pseudogene)
hg19_v2_chr15_-_59041768_59041950	0.330725	FOXA2_FOXJ3	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr11_-_85780853_85780936	0.329702	FOXA2_FOXJ3	ENST00000531930.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000528398.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein
hg19_v2_chr2_-_191878874_191878976	0.32141	FOXA2_FOXJ3	ENST00000392322.3|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa 	ENST00000392323.2|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa 	ENST00000424722.1|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa 	ENST00000361099.3|STAT1|ENSG00000115415.14|signal transducer and activator of transcription 1, 91kDa
hg19_v2_chr2_+_58655520_58655570	0.319765	FOXA2_FOXJ3	ENST00000455219.3|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000449448.2|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr1_-_169555709_169555730	0.314431	FOXA2_FOXJ3	ENST00000546081.1|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr3_+_156393349_156393363	0.307289	FOXA2_FOXJ3	ENST00000473702.1|TIPARP|ENSG00000163659.8|TCDD-inducible poly(ADP-ribose) polymerase
hg19_v2_chr1_-_114429997_114430077	0.307239	FOXA2_FOXJ3	ENST00000471267.1|BCL2L15|ENSG00000188761.7|BCL2-like 15 	ENST00000393320.3|BCL2L15|ENSG00000188761.7|BCL2-like 15
hg19_v2_chr15_+_57998923_57998934	0.305902	FOXA2_FOXJ3	ENST00000380557.4|POLR2M|ENSG00000255529.3|polymerase (RNA) II (DNA directed) polypeptide M
hg19_v2_chr4_+_86749045_86749070	0.303556	FOXA2_FOXJ3	ENST00000514229.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr6_+_21666633_21666681	0.295506	FOXA2_FOXJ3	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr16_-_67597789_67597861	0.290066	FOXA2_FOXJ3	ENST00000605277.1|CTD-2012K14.6|ENSG00000261386.2|CTD-2012K14.6
hg19_v2_chr3_-_135916073_135916096	0.285846	FOXA2_FOXJ3	ENST00000481989.1|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr6_-_13621126_13621126	0.284658	FOXA2_FOXJ3	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr3_+_119316721_119316739	0.282867	FOXA2_FOXJ3	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr5_-_159846066_159846095	0.282283	FOXA2_FOXJ3	ENST00000519349.1|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae) 	ENST00000520664.1|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr7_-_139876734_139876764	0.281433	FOXA2_FOXJ3	ENST00000006967.5|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr17_+_71229346_71229365	0.278668	FOXA2_FOXJ3	ENST00000535032.2|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80 	ENST00000582793.1|C17orf80|ENSG00000141219.11|chromosome 17 open reading frame 80
hg19_v2_chr10_+_111985837_111985844	0.274361	FOXA2_FOXJ3	ENST00000393134.1|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chr9_-_94877658_94877706	0.268109	FOXA2_FOXJ3	ENST00000262554.2|SPTLC1|ENSG00000090054.9|serine palmitoyltransferase, long chain base subunit 1 	ENST00000337841.4|SPTLC1|ENSG00000090054.9|serine palmitoyltransferase, long chain base subunit 1
hg19_v2_chr2_+_172309634_172309643	0.267593	FOXA2_FOXJ3	ENST00000339506.3|DCAF17|ENSG00000115827.9|DDB1 and CUL4 associated factor 17
hg19_v2_chr6_-_122792919_122792970	0.266905	FOXA2_FOXJ3	ENST00000339697.4|SERINC1|ENSG00000111897.6|serine incorporator 1
hg19_v2_chr5_+_65222500_65222601	0.264525	FOXA2_FOXJ3	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr11_-_7904464_7904511	0.263525	FOXA2_FOXJ3	ENST00000502624.2|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5	ENST00000527565.1|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5
hg19_v2_chr16_-_80926457_80926494	0.259946	FOXA2_FOXJ3	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr7_+_106809406_106809460	0.255863	FOXA2_FOXJ3	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr4_+_86748898_86748936	0.254955	FOXA2_FOXJ3	ENST00000509300.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr12_-_92536433_92536459	0.251318	FOXA2_FOXJ3	ENST00000551563.2|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000546975.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79 	ENST00000549802.1|C12orf79|ENSG00000257242.2|chromosome 12 open reading frame 79
hg19_v2_chr8_+_95558771_95558771	0.250508	FOXA2_FOXJ3	ENST00000391679.1|AC023632.1|ENSG00000212997.1|HCG2009141; PRO2397; Uncharacterized protein
hg19_v2_chr1_-_169555779_169555826	0.250002	FOXA2_FOXJ3	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr6_+_62284008_62284008	0.245993	FOXA2_FOXJ3	ENST00000544932.1|MTRNR2L9|ENSG00000255633.3|MT-RNR2-like 9 (pseudogene)
hg19_v2_chr14_+_97263641_97263764	0.245038	FOXA2_FOXJ3	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr5_-_57854070_57854070	0.243009	FOXA2_FOXJ3	ENST00000504333.1|CTD-2117L12.1|ENSG00000250127.1|Uncharacterized protein
hg19_v2_chr8_+_31497271_31497285	0.241722	FOXA2_FOXJ3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr10_-_14050522_14050584	0.241156	FOXA2_FOXJ3	ENST00000342409.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chr2_-_71454185_71454242	0.23889	FOXA2_FOXJ3	ENST00000244221.8|PAIP2B|ENSG00000124374.8|poly(A) binding protein interacting protein 2B
hg19_v2_chr17_-_57229155_57229198	0.237191	FOXA2_FOXJ3	ENST00000584089.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr10_-_32217717_32217781	0.232632	FOXA2_FOXJ3	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr4_-_164534657_164534701	0.230173	FOXA2_FOXJ3	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr16_+_10479906_10479925	0.230053	FOXA2_FOXJ3	ENST00000562527.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000396560.2|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000396559.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000562102.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000543967.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000569939.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000569900.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2
hg19_v2_chr9_-_86432547_86432699	0.226178	FOXA2_FOXJ3	ENST00000376365.3|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1 	ENST00000376371.2|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1
hg19_v2_chr1_-_203273676_203273784	0.226028	FOXA2_FOXJ3	ENST00000425698.1|RP11-134P9.1|ENSG00000233791.1|long intergenic non-protein coding RNA 1136
hg19_v2_chr14_-_102605983_102606042	0.225523	FOXA2_FOXJ3	ENST00000334701.7|HSP90AA1|ENSG00000080824.14|heat shock protein 90kDa alpha (cytosolic), class A member 1
hg19_v2_chr10_+_70847852_70847874	0.224552	FOXA2_FOXJ3	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr3_+_148447887_148447911	0.223725	FOXA2_FOXJ3	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr16_+_28857957_28857969	0.223197	FOXA2_FOXJ3	ENST00000567536.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr4_-_111120334_111120361	0.221307	FOXA2_FOXJ3	ENST00000503885.1|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr16_+_53469525_53469598	0.219521	FOXA2_FOXJ3	ENST00000544405.2|RBL2|ENSG00000103479.10|retinoblastoma-like 2 (p130)
hg19_v2_chr18_+_21033239_21033302	0.217484	FOXA2_FOXJ3	ENST00000581585.1|RIOK3|ENSG00000101782.10|RIO kinase 3 	ENST00000577501.1|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr11_+_110225855_110226016	0.212697	FOXA2_FOXJ3	ENST00000526605.1|RP11-347E10.1|ENSG00000254416.1|RP11-347E10.1	ENST00000526703.1|RP11-347E10.1|ENSG00000254416.1|RP11-347E10.1
hg19_v2_chr1_+_196621002_196621021	0.21236	FOXA2_FOXJ3	ENST00000367429.4|CFH|ENSG00000000971.11|complement factor H 	ENST00000439155.2|CFH|ENSG00000000971.11|complement factor H
hg19_v2_chr3_+_172468749_172468821	0.210633	FOXA2_FOXJ3	ENST00000366254.2|ECT2|ENSG00000114346.9|epithelial cell transforming sequence 2 oncogene 	ENST00000415665.1|ECT2|ENSG00000114346.9|epithelial cell transforming sequence 2 oncogene 	ENST00000438041.1|ECT2|ENSG00000114346.9|epithelial cell transforming sequence 2 oncogene
hg19_v2_chr14_+_57671888_57671888	0.209667	FOXA2_FOXJ3	ENST00000391612.1|AL391152.1|ENSG00000212928.1|AL391152.1
hg19_v2_chr12_+_79439405_79439421	0.206452	FOXA2_FOXJ3	ENST00000552744.1|SYT1|ENSG00000067715.9|synaptotagmin I
hg19_v2_chr1_-_114430169_114430195	0.205488	FOXA2_FOXJ3	ENST00000393316.3|BCL2L15|ENSG00000188761.7|BCL2-like 15
hg19_v2_chr6_+_26251835_26251879	0.205355	FOXA2_FOXJ3	ENST00000356350.2|HIST1H2BH|ENSG00000197459.2|histone cluster 1, H2bh
hg19_v2_chr11_+_118398178_118398208	0.200666	FOXA2_FOXJ3	ENST00000302783.4|TTC36|ENSG00000172425.6|tetratricopeptide repeat domain 36 	ENST00000539546.1|TTC36|ENSG00000172425.6|tetratricopeptide repeat domain 36
hg19_v2_chr4_-_174256276_174256303	0.198753	FOXA2_FOXJ3	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr7_-_6098770_6098861	0.198732	FOXA2_FOXJ3	ENST00000536084.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1 	ENST00000446699.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1 	ENST00000199389.6|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1
hg19_v2_chrX_-_47863348_47863412	0.198282	FOXA2_FOXJ3	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr4_-_142199943_142199958	0.19816	FOXA2_FOXJ3	ENST00000514347.1|RP11-586L23.1|ENSG00000248747.1|RP11-586L23.1
hg19_v2_chr3_+_132316081_132316102	0.197834	FOXA2_FOXJ3	ENST00000249887.2|ACKR4|ENSG00000129048.6|atypical chemokine receptor 4
hg19_v2_chr4_-_111119804_111119832	0.197626	FOXA2_FOXJ3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr6_+_30130969_30131007	0.194072	FOXA2_FOXJ3	ENST00000376694.4|TRIM15|ENSG00000204610.8|tripartite motif containing 15
hg19_v2_chr12_-_10324716_10324742	0.190422	FOXA2_FOXJ3	ENST00000545927.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000432556.2|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000309539.3|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000544577.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1
hg19_v2_chr11_-_102651343_102651365	0.188798	FOXA2_FOXJ3	ENST00000279441.4|MMP10|ENSG00000166670.5|matrix metallopeptidase 10 (stromelysin 2) 	ENST00000539681.1|MMP10|ENSG00000166670.5|matrix metallopeptidase 10 (stromelysin 2)
hg19_v2_chr10_-_103578182_103578222	0.187591	FOXA2_FOXJ3	ENST00000439817.1|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase)
hg19_v2_chr3_+_142315294_142315315	0.185717	FOXA2_FOXJ3	ENST00000464320.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr10_-_21186144_21186247	0.185221	FOXA2_FOXJ3	ENST00000377119.1|NEBL|ENSG00000078114.14|nebulette
hg19_v2_chr8_-_100025238_100025272	0.184129	FOXA2_FOXJ3	ENST00000521696.1|RP11-410L14.2|ENSG00000253948.1|RP11-410L14.2
hg19_v2_chr6_-_80247140_80247175	0.183947	FOXA2_FOXJ3	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr21_+_40817749_40817868	0.181516	FOXA2_FOXJ3	ENST00000380637.3|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000380634.1|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000458295.1|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000440288.2|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein 	ENST00000380631.1|SH3BGR|ENSG00000185437.9|SH3 domain binding glutamic acid-rich protein
hg19_v2_chr1_-_238108575_238108575	0.180345	FOXA2_FOXJ3	ENST00000604646.1|MTRNR2L11|ENSG00000270188.1|MT-RNR2-like 11 (pseudogene)
hg19_v2_chr3_-_58523010_58523078	0.178774	FOXA2_FOXJ3	ENST00000459701.2|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain 	ENST00000302819.5|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain
hg19_v2_chr20_+_44035200_44035288	0.178134	FOXA2_FOXJ3	ENST00000372717.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENST00000360981.4|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr2_+_58655461_58655492	0.17658	FOXA2_FOXJ3	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr7_-_16840820_16841011	0.174574	FOXA2_FOXJ3	ENST00000450569.1|AGR2|ENSG00000106541.7|anterior gradient 2
hg19_v2_chr17_+_22022437_22022437	0.174247	FOXA2_FOXJ3	ENST00000540040.1|MTRNR2L1|ENSG00000256618.1|MT-RNR2-like 1
hg19_v2_chr5_-_137674000_137674044	0.173536	FOXA2_FOXJ3	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr4_-_14889791_14889805	0.173337	FOXA2_FOXJ3	ENST00000509654.1|LINC00504|ENSG00000248360.3|long intergenic non-protein coding RNA 504 	ENST00000515031.1|LINC00504|ENSG00000248360.3|long intergenic non-protein coding RNA 504 	ENST00000505089.2|LINC00504|ENSG00000248360.3|long intergenic non-protein coding RNA 504
hg19_v2_chr7_-_81635106_81635130	0.172985	FOXA2_FOXJ3	ENST00000443883.1|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr8_-_40755333_40755352	0.172387	FOXA2_FOXJ3	ENST00000297737.6|ZMAT4|ENSG00000165061.10|zinc finger, matrin-type 4 	ENST00000315769.7|ZMAT4|ENSG00000165061.10|zinc finger, matrin-type 4
hg19_v2_chr1_+_172389821_172389833	0.169444	FOXA2_FOXJ3	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr4_-_170679024_170679104	0.169347	FOXA2_FOXJ3	ENST00000393381.2|C4orf27|ENSG00000056050.6|chromosome 4 open reading frame 27
hg19_v2_chr3_+_142315225_142315290	0.168003	FOXA2_FOXJ3	ENST00000457734.2|PLS1|ENSG00000120756.8|plastin 1 	ENST00000483373.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000475296.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000495744.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000476044.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000461644.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr16_-_30064244_30064299	0.166181	FOXA2_FOXJ3	ENST00000571269.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B 	ENST00000561666.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B
hg19_v2_chr3_+_119298280_119298392	0.165545	FOXA2_FOXJ3	ENST00000481816.1|ADPRH|ENSG00000144843.7|ADP-ribosylarginine hydrolase
hg19_v2_chr5_+_32531893_32531930	0.162683	FOXA2_FOXJ3	ENST00000512913.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae)
hg19_v2_chr6_-_100016527_100016589	0.162644	FOXA2_FOXJ3	ENST00000523985.1|CCNC|ENSG00000112237.8|cyclin C 	ENST00000518714.1|CCNC|ENSG00000112237.8|cyclin C 	ENST00000520371.1|CCNC|ENSG00000112237.8|cyclin C
hg19_v2_chr18_+_158327_158383	0.161318	FOXA2_FOXJ3	ENST00000582707.1|USP14|ENSG00000101557.10|ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)
hg19_v2_chr6_+_122793058_122793087	0.16034	FOXA2_FOXJ3	ENST00000392491.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr14_+_77425972_77425985	0.159783	FOXA2_FOXJ3	ENST00000553613.1|RP11-7F17.7|ENSG00000258602.1|RP11-7F17.7
hg19_v2_chr12_+_20968608_20968673	0.15912	FOXA2_FOXJ3	ENST00000381541.3|LST3|ENSG00000257046.1|Putative solute carrier organic anion transporter family member 1B7; Uncharacterized protein  	ENST00000540229.1|LST3|ENSG00000257046.1|Putative solute carrier organic anion transporter family member 1B7; Uncharacterized protein  	ENST00000553473.1|SLCO1B3|ENSG00000111700.8|solute carrier organic anion transporter family, member 1B3 	ENST00000554957.1|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr11_+_65851443_65851457	0.15895	FOXA2_FOXJ3	ENST00000533756.1|PACS1|ENSG00000175115.7|phosphofurin acidic cluster sorting protein 1
hg19_v2_chr12_+_54378923_54378970	0.158596	FOXA2_FOXJ3	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr2_+_143635067_143635211	0.157174	FOXA2_FOXJ3	ENST00000264170.4|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr10_+_33271469_33271479	0.156268	FOXA2_FOXJ3	ENST00000414157.1|RP11-462L8.1|ENSG00000229656.2|RP11-462L8.1
hg19_v2_chr5_+_153418466_153418565	0.155411	FOXA2_FOXJ3	ENST00000522782.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000439768.2|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000436816.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000322602.5|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000522177.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3 	ENST00000520899.1|MFAP3|ENSG00000037749.7|microfibrillar-associated protein 3
hg19_v2_chr2_+_114195268_114195340	0.154947	FOXA2_FOXJ3	ENST00000259199.4|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000416503.2|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000433343.2|CBWD2|ENSG00000136682.10|COBW domain containing 2
hg19_v2_chr8_-_128231299_128231352	0.154862	FOXA2_FOXJ3	ENST00000500112.1|CCAT1|ENSG00000247844.1|colon cancer associated transcript 1 (non-protein coding)
hg19_v2_chrX_-_70329118_70329194	0.154097	FOXA2_FOXJ3	ENST00000374188.3|IL2RG|ENSG00000147168.8|interleukin 2 receptor, gamma
hg19_v2_chr2_+_143635222_143635240	0.153664	FOXA2_FOXJ3	ENST00000375773.2|KYNU|ENSG00000115919.10|kynureninase 	ENST00000409512.1|KYNU|ENSG00000115919.10|kynureninase 	ENST00000410015.2|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr7_-_37026108_37026145	0.153377	FOXA2_FOXJ3	ENST00000396045.3|ELMO1|ENSG00000155849.11|engulfment and cell motility 1
hg19_v2_chr1_-_243417762_243417788	0.153376	FOXA2_FOXJ3	ENST00000522191.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr1_-_28559502_28559570	0.153263	FOXA2_FOXJ3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr17_-_30228678_30228784	0.152555	FOXA2_FOXJ3	ENST00000261708.4|UTP6|ENSG00000108651.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chrX_-_122756660_122756696	0.150339	FOXA2_FOXJ3	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr11_-_34535297_34535317	0.149797	FOXA2_FOXJ3	ENST00000532417.1|ELF5|ENSG00000135374.5|E74-like factor 5 (ets domain transcription factor)
hg19_v2_chr2_+_191513959_191514047	0.148454	FOXA2_FOXJ3	ENST00000337386.5|NAB1|ENSG00000138386.12|NGFI-A binding protein 1 (EGR1 binding protein 1) 	ENST00000357215.5|NAB1|ENSG00000138386.12|NGFI-A binding protein 1 (EGR1 binding protein 1)
hg19_v2_chr18_-_52626622_52626739	0.148381	FOXA2_FOXJ3	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr14_+_58894404_58894456	0.147936	FOXA2_FOXJ3	ENST00000554463.1|KIAA0586|ENSG00000100578.10|KIAA0586 	ENST00000555833.1|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr1_+_56046710_56046801	0.147397	FOXA2_FOXJ3	ENST00000422374.1|RP11-466L17.1|ENSG00000234810.1|RP11-466L17.1
hg19_v2_chr12_-_15374343_15374416	0.146408	FOXA2_FOXJ3	ENST00000256953.2|RERG|ENSG00000134533.2|RAS-like, estrogen-regulated, growth inhibitor 	ENST00000546331.1|RERG|ENSG00000134533.2|RAS-like, estrogen-regulated, growth inhibitor
hg19_v2_chr2_-_113191096_113191222	0.146008	FOXA2_FOXJ3	ENST00000496537.1|RGPD8|ENSG00000169629.7|RANBP2-like and GRIP domain containing 8 	ENST00000330575.5|RGPD8|ENSG00000169629.7|RANBP2-like and GRIP domain containing 8 	ENST00000302558.3|RGPD8|ENSG00000169629.7|RANBP2-like and GRIP domain containing 8
hg19_v2_chr3_-_169487617_169487683	0.145738	FOXA2_FOXJ3	ENST00000330368.2|ACTRT3|ENSG00000184378.2|actin-related protein T3
hg19_v2_chr5_-_153418407_153418503	0.145449	FOXA2_FOXJ3	ENST00000522858.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000522634.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000523705.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000524246.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000520313.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000518102.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000351797.4|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000520667.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000519808.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2 	ENST00000522395.1|FAM114A2|ENSG00000055147.13|family with sequence similarity 114, member A2
hg19_v2_chr10_-_103578162_103578175	0.145242	FOXA2_FOXJ3	ENST00000361464.3|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase) 	ENST00000357797.5|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase) 	ENST00000370094.3|MGEA5|ENSG00000198408.9|meningioma expressed antigen 5 (hyaluronidase)
hg19_v2_chr5_+_79703823_79703845	0.145226	FOXA2_FOXJ3	ENST00000338008.5|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16 	ENST00000510158.1|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16 	ENST00000505560.1|ZFYVE16|ENSG00000039319.12|zinc finger, FYVE domain containing 16
hg19_v2_chr14_+_56078695_56078784	0.143693	FOXA2_FOXJ3	ENST00000416613.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr15_-_83224682_83224682	0.142826	FOXA2_FOXJ3	ENST00000562833.1|RP11-152F13.10|ENSG00000260836.1|RP11-152F13.10
hg19_v2_chr7_+_142374104_142374104	0.142079	FOXA2_FOXJ3	ENST00000604952.1|MTRNR2L6|ENSG00000270672.1|MT-RNR2-like 6
hg19_v2_chr3_+_119298523_119298644	0.141391	FOXA2_FOXJ3	ENST00000357003.3|ADPRH|ENSG00000144843.7|ADP-ribosylarginine hydrolase
hg19_v2_chr11_-_92930556_92930621	0.141113	FOXA2_FOXJ3	ENST00000529184.1|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr13_-_36920420_36920574	0.14061	FOXA2_FOXJ3	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr4_-_21950356_21950439	0.139918	FOXA2_FOXJ3	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr10_-_25010795_25010904	0.139824	FOXA2_FOXJ3	ENST00000416305.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21 	ENST00000376410.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr2_+_170440844_170440897	0.138251	FOXA2_FOXJ3	ENST00000260970.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000433207.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000409714.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000462903.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G)
hg19_v2_chr16_-_86542455_86542500	0.138139	FOXA2_FOXJ3	ENST00000595886.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000597578.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000593604.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr1_+_207943667_207943684	0.137892	FOXA2_FOXJ3	ENST00000462968.2|CD46|ENSG00000117335.14|CD46 molecule, complement regulatory protein
hg19_v2_chr12_+_32832203_32832270	0.137545	FOXA2_FOXJ3	ENST00000553257.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000549701.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000358214.5|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000266481.6|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000551476.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000550154.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000547312.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000414834.2|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000381000.4|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000548750.1|DNM1L|ENSG00000087470.13|dynamin 1-like
hg19_v2_chr5_+_169011033_169011108	0.13727	FOXA2_FOXJ3	ENST00000513795.1|SPDL1|ENSG00000040275.12|spindle apparatus coiled-coil protein 1
hg19_v2_chr8_+_27632047_27632080	0.136566	FOXA2_FOXJ3	ENST00000397418.2|ESCO2|ENSG00000171320.10|establishment of sister chromatid cohesion N-acetyltransferase 2
hg19_v2_chr5_-_98262240_98262240	0.136486	FOXA2_FOXJ3	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr3_+_136649311_136649360	0.13642	FOXA2_FOXJ3	ENST00000469404.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1 	ENST00000467911.1|NCK1|ENSG00000158092.2|NCK adaptor protein 1
hg19_v2_chr3_-_64009658_64009687	0.135795	FOXA2_FOXJ3	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr5_-_159846399_159846412	0.134984	FOXA2_FOXJ3	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr15_+_86098670_86098685	0.134742	FOXA2_FOXJ3	ENST00000558811.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr2_+_61372226_61372273	0.131837	FOXA2_FOXJ3	ENST00000426997.1|C2orf74|ENSG00000237651.2|chromosome 2 open reading frame 74
hg19_v2_chr14_-_58893832_58893865	0.131293	FOXA2_FOXJ3	ENST00000556007.2|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr4_+_57845024_57845037	0.131265	FOXA2_FOXJ3	ENST00000431623.2|POLR2B|ENSG00000047315.10|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 	ENST00000441246.2|POLR2B|ENSG00000047315.10|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
hg19_v2_chr8_+_74271144_74271162	0.131011	FOXA2_FOXJ3	ENST00000519134.1|RP11-434I12.3|ENSG00000253339.1|RP11-434I12.3	ENST00000518355.1|RP11-434I12.3|ENSG00000253339.1|RP11-434I12.3
hg19_v2_chr2_+_202047843_202047918	0.13097	FOXA2_FOXJ3	ENST00000272879.5|CASP10|ENSG00000003400.10|caspase 10, apoptosis-related cysteine peptidase 	ENST00000374650.3|CASP10|ENSG00000003400.10|caspase 10, apoptosis-related cysteine peptidase 	ENST00000346817.5|CASP10|ENSG00000003400.10|caspase 10, apoptosis-related cysteine peptidase 	ENST00000313728.7|CASP10|ENSG00000003400.10|caspase 10, apoptosis-related cysteine peptidase 	ENST00000448480.1|CASP10|ENSG00000003400.10|caspase 10, apoptosis-related cysteine peptidase
hg19_v2_chr9_-_119162885_119162885	0.130817	FOXA2_FOXJ3	ENST00000445861.2|PAPPA-AS1|ENSG00000256040.1|PAPPA antisense RNA 1
hg19_v2_chr15_-_76352069_76352145	0.130519	FOXA2_FOXJ3	ENST00000305435.10|NRG4|ENSG00000169752.12|neuregulin 4 	ENST00000563910.1|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr14_+_35747825_35747847	0.130296	FOXA2_FOXJ3	ENST00000540871.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr7_-_139876812_139876860	0.129688	FOXA2_FOXJ3	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr14_+_56127989_56128008	0.129395	FOXA2_FOXJ3	ENST00000555573.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr3_-_107941209_107941227	0.129245	FOXA2_FOXJ3	ENST00000492106.1|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chr5_-_59064458_59064511	0.12895	FOXA2_FOXJ3	ENST00000502575.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000507116.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr8_+_125860939_125861008	0.128887	FOXA2_FOXJ3	ENST00000525292.1|LINC00964|ENSG00000249816.2|long intergenic non-protein coding RNA 964 	ENST00000528090.1|LINC00964|ENSG00000249816.2|long intergenic non-protein coding RNA 964
hg19_v2_chr10_-_73975657_73975739	0.126989	FOXA2_FOXJ3	ENST00000394919.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000526751.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1
hg19_v2_chr4_+_172734548_172734654	0.126689	FOXA2_FOXJ3	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr12_+_32832134_32832196	0.126563	FOXA2_FOXJ3	ENST00000452533.2|DNM1L|ENSG00000087470.13|dynamin 1-like
hg19_v2_chr2_+_210518057_210518117	0.126277	FOXA2_FOXJ3	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr20_+_9049303_9049454	0.126023	FOXA2_FOXJ3	ENST00000407043.2|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000441846.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr6_+_123110465_123110480	0.124401	FOXA2_FOXJ3	ENST00000539041.1|SMPDL3A|ENSG00000172594.8|sphingomyelin phosphodiesterase, acid-like 3A
hg19_v2_chr1_+_161035655_161035655	0.124284	FOXA2_FOXJ3	ENST00000600454.1|AL591806.1|ENSG00000268154.1|Uncharacterized protein
hg19_v2_chr5_-_10308125_10308142	0.124147	FOXA2_FOXJ3	ENST00000296658.3|CMBL|ENSG00000164237.4|carboxymethylenebutenolidase homolog (Pseudomonas)
hg19_v2_chr12_+_21679220_21679252	0.122578	FOXA2_FOXJ3	ENST00000256969.2|C12orf39|ENSG00000134548.5|chromosome 12 open reading frame 39
hg19_v2_chr14_-_54418598_54418865	0.121084	FOXA2_FOXJ3	ENST00000609748.1|BMP4|ENSG00000125378.11|bone morphogenetic protein 4 	ENST00000558961.1|BMP4|ENSG00000125378.11|bone morphogenetic protein 4
hg19_v2_chr10_+_7745303_7745363	0.120654	FOXA2_FOXJ3	ENST00000429820.1|ITIH2|ENSG00000151655.13|inter-alpha-trypsin inhibitor heavy chain 2 	ENST00000379587.4|ITIH2|ENSG00000151655.13|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v2_chr15_+_78857849_78857869	0.120564	FOXA2_FOXJ3	ENST00000299565.5|CHRNA5|ENSG00000169684.9|cholinergic receptor, nicotinic, alpha 5 (neuronal)
hg19_v2_chr15_+_78857870_78857913	0.120389	FOXA2_FOXJ3	ENST00000559554.1|CHRNA5|ENSG00000169684.9|cholinergic receptor, nicotinic, alpha 5 (neuronal)
hg19_v2_chrX_+_24167828_24167907	0.119973	FOXA2_FOXJ3	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr14_-_31926595_31926618	0.119075	FOXA2_FOXJ3	ENST00000547378.1|RP11-176H8.1|ENSG00000203546.3|Uncharacterized protein
hg19_v2_chr14_+_56127960_56127979	0.118846	FOXA2_FOXJ3	ENST00000553624.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr1_-_77685084_77685122	0.118601	FOXA2_FOXJ3	ENST00000370812.3|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K 	ENST00000359130.1|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K 	ENST00000445065.1|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K 	ENST00000370813.5|PIGK|ENSG00000142892.10|phosphatidylinositol glycan anchor biosynthesis, class K
hg19_v2_chr15_+_79166065_79166163	0.118282	FOXA2_FOXJ3	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr7_+_151038850_151038915	0.118281	FOXA2_FOXJ3	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr2_-_55920952_55921045	0.11792	FOXA2_FOXJ3	ENST00000447944.2|PNPT1|ENSG00000138035.10|polyribonucleotide nucleotidyltransferase 1
hg19_v2_chr10_-_69597828_69597854	0.117745	FOXA2_FOXJ3	ENST00000339758.7|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr8_+_48920960_48921011	0.117617	FOXA2_FOXJ3	ENST00000523111.2|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000523432.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000521346.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000517630.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2
hg19_v2_chr13_-_40924439_40924445	0.117343	FOXA2_FOXJ3	ENST00000400432.3|RP11-172E9.2|ENSG00000230058.1|RP11-172E9.2
hg19_v2_chr3_-_154042235_154042290	0.116919	FOXA2_FOXJ3	ENST00000308361.6|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36 	ENST00000496811.1|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36 	ENST00000544526.1|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36
hg19_v2_chr5_-_60240858_60240905	0.116175	FOXA2_FOXJ3	ENST00000426742.2|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000265038.5|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000543101.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000439176.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8
hg19_v2_chr3_+_130650738_130650888	0.115946	FOXA2_FOXJ3	ENST00000504612.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr13_-_103451307_103451380	0.115853	FOXA2_FOXJ3	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr11_+_62186498_62186515	0.115492	FOXA2_FOXJ3	ENST00000278282.2|SCGB1A1|ENSG00000149021.2|secretoglobin, family 1A, member 1 (uteroglobin)
hg19_v2_chr8_+_100025476_100025548	0.115409	FOXA2_FOXJ3	ENST00000355155.1|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000357162.2|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000358544.2|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000395996.1|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast) 	ENST00000441350.2|VPS13B|ENSG00000132549.14|vacuolar protein sorting 13 homolog B (yeast)
hg19_v2_chr4_+_103790462_103790537	0.114883	FOXA2_FOXJ3	ENST00000503643.1|CISD2|ENSG00000145354.5|CDGSH iron sulfur domain 2
hg19_v2_chr4_-_70080449_70080449	0.114639	FOXA2_FOXJ3	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chr22_+_45148432_45148585	0.114628	FOXA2_FOXJ3	ENST00000389774.2|ARHGAP8|ENSG00000241484.5|Rho GTPase activating protein 8 	ENST00000396119.2|ARHGAP8|ENSG00000241484.5|Rho GTPase activating protein 8 	ENST00000336963.4|ARHGAP8|ENSG00000241484.5|Rho GTPase activating protein 8 	ENST00000356099.6|ARHGAP8|ENSG00000241484.5|Rho GTPase activating protein 8 	ENST00000412433.1|ARHGAP8|ENSG00000241484.5|Rho GTPase activating protein 8
hg19_v2_chr3_-_139195350_139195370	0.114413	FOXA2_FOXJ3	ENST00000232217.2|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr3_-_154042205_154042229	0.113497	FOXA2_FOXJ3	ENST00000329463.5|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36
hg19_v2_chr12_-_75905374_75905420	0.112998	FOXA2_FOXJ3	ENST00000438169.2|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENST00000229214.4|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr13_-_49975632_49975735	0.112917	FOXA2_FOXJ3	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr2_+_40973618_40973627	0.112662	FOXA2_FOXJ3	ENST00000420187.1|AC007317.1|ENSG00000233128.1|AC007317.1
hg19_v2_chr5_+_162932554_162932661	0.111311	FOXA2_FOXJ3	ENST00000321757.6|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta 	ENST00000421814.2|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta 	ENST00000518095.1|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta
hg19_v2_chr18_-_53303123_53303190	0.110266	FOXA2_FOXJ3	ENST00000569357.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000565124.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000398339.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr12_-_57472522_57472556	0.110204	FOXA2_FOXJ3	ENST00000379391.3|TMEM194A|ENSG00000166881.5|transmembrane protein 194A 	ENST00000300128.4|TMEM194A|ENSG00000166881.5|transmembrane protein 194A
hg19_v2_chr10_+_62538089_62538244	0.109519	FOXA2_FOXJ3	ENST00000519078.2|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1 	ENST00000395284.3|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1 	ENST00000316629.4|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1
hg19_v2_chr2_-_86422523_86422595	0.109178	FOXA2_FOXJ3	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr19_+_15160130_15160195	0.10804	FOXA2_FOXJ3	ENST00000427043.3|CASP14|ENSG00000105141.4|caspase 14, apoptosis-related cysteine peptidase
hg19_v2_chr16_-_21877629_21877629	0.106773	FOXA2_FOXJ3	ENST00000544693.1|NPIPB4|ENSG00000185864.12|nuclear pore complex interacting protein family, member B4
hg19_v2_chr14_+_32547434_32547446	0.106552	FOXA2_FOXJ3	ENST00000556191.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000554090.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr2_+_88047606_88047606	0.106438	FOXA2_FOXJ3	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr2_-_46844159_46844209	0.105961	FOXA2_FOXJ3	ENST00000474980.1|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F 	ENST00000306465.4|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr3_+_101292939_101293063	0.105933	FOXA2_FOXJ3	ENST00000265260.3|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000469941.1|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000296024.5|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein
hg19_v2_chr2_+_201450591_201450680	0.105853	FOXA2_FOXJ3	ENST00000374700.2|AOX1|ENSG00000138356.9|aldehyde oxidase 1
hg19_v2_chr15_-_54051831_54051904	0.105598	FOXA2_FOXJ3	ENST00000557913.1|WDR72|ENSG00000166415.10|WD repeat domain 72 	ENST00000360509.5|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr9_+_74729511_74729525	0.105313	FOXA2_FOXJ3	ENST00000545168.1|GDA|ENSG00000119125.12|guanine deaminase
hg19_v2_chr16_+_11439286_11439328	0.105179	FOXA2_FOXJ3	ENST00000312499.5|RMI2|ENSG00000175643.7|RecQ mediated genome instability 2 	ENST00000576027.1|RMI2|ENSG00000175643.7|RecQ mediated genome instability 2
hg19_v2_chr10_-_73848086_73848099	0.104922	FOXA2_FOXJ3	ENST00000536168.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr9_+_22646189_22646204	0.103958	FOXA2_FOXJ3	ENST00000436786.1|RP11-399D6.2|ENSG00000234840.1|RP11-399D6.2
hg19_v2_chr3_-_182703688_182703741	0.103424	FOXA2_FOXJ3	ENST00000466812.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000487822.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000460412.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000469954.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr6_-_100016492_100016526	0.102752	FOXA2_FOXJ3	ENST00000369217.4|CCNC|ENSG00000112237.8|cyclin C 	ENST00000369220.4|CCNC|ENSG00000112237.8|cyclin C 	ENST00000482541.2|CCNC|ENSG00000112237.8|cyclin C
hg19_v2_chr4_-_80994210_80994284	0.102529	FOXA2_FOXJ3	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr14_+_38065052_38065052	0.102475	FOXA2_FOXJ3	ENST00000556845.1|TTC6|ENSG00000139865.12|tetratricopeptide repeat domain 6
hg19_v2_chr16_-_71323617_71323632	0.101916	FOXA2_FOXJ3	ENST00000563876.1|CMTR2|ENSG00000180917.12|cap methyltransferase 2
hg19_v2_chr17_-_39203519_39203568	0.101677	FOXA2_FOXJ3	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chrX_+_56644819_56644825	0.101472	FOXA2_FOXJ3	ENST00000446028.1|RP11-431N15.2|ENSG00000230105.1|RP11-431N15.2
hg19_v2_chr3_+_190333097_190333113	0.101218	FOXA2_FOXJ3	ENST00000412080.1|IL1RAP|ENSG00000196083.5|interleukin 1 receptor accessory protein
hg19_v2_chr9_+_131683174_131683282	0.101152	FOXA2_FOXJ3	ENST00000372592.3|PHYHD1|ENSG00000175287.14|phytanoyl-CoA dioxygenase domain containing 1 	ENST00000428610.1|PHYHD1|ENSG00000175287.14|phytanoyl-CoA dioxygenase domain containing 1
hg19_v2_chr10_+_7745232_7745295	0.100902	FOXA2_FOXJ3	ENST00000358415.4|ITIH2|ENSG00000151655.13|inter-alpha-trypsin inhibitor heavy chain 2
hg19_v2_chr2_-_172750733_172750762	0.10025	FOXA2_FOXJ3	ENST00000392592.4|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12 	ENST00000422440.2|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12
hg19_v2_chr2_-_46844242_46844258	0.100088	FOXA2_FOXJ3	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr2_+_210517895_210518021	0.099966	FOXA2_FOXJ3	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr11_+_102217936_102218035	0.0993643	FOXA2_FOXJ3	ENST00000532832.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000530675.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000533742.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000227758.2|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000532672.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000531259.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2 	ENST00000527465.1|BIRC2|ENSG00000110330.4|baculoviral IAP repeat containing 2
hg19_v2_chr10_+_97759848_97759883	0.0977547	FOXA2_FOXJ3	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr10_+_78078088_78078092	0.0970362	FOXA2_FOXJ3	ENST00000496424.2|C10orf11|ENSG00000148655.10|chromosome 10 open reading frame 11
hg19_v2_chr19_-_53324884_53324922	0.096825	FOXA2_FOXJ3	ENST00000457749.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000414252.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000391783.2|ZNF28|ENSG00000198538.6|zinc finger protein 28
hg19_v2_chr7_+_77469439_77469497	0.0967441	FOXA2_FOXJ3	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr15_+_71185148_71185214	0.0967213	FOXA2_FOXJ3	ENST00000443425.2|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000560755.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr15_+_90735145_90735166	0.0958772	FOXA2_FOXJ3	ENST00000559792.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr5_-_58571935_58571951	0.0956512	FOXA2_FOXJ3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr11_-_94226964_94227025	0.09538	FOXA2_FOXJ3	ENST00000538923.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000540013.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000407439.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000393241.4|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr19_-_10311868_10311875	0.095109	FOXA2_FOXJ3	ENST00000588118.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1 	ENST00000586800.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1
hg19_v2_chr5_+_147774275_147774340	0.094998	FOXA2_FOXJ3	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr8_+_26247878_26247981	0.0944888	FOXA2_FOXJ3	ENST00000518611.1|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr20_-_1165117_1165117	0.0944331	FOXA2_FOXJ3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr2_+_12857043_12857127	0.0939356	FOXA2_FOXJ3	ENST00000381465.2|TRIB2|ENSG00000071575.7|tribbles pseudokinase 2
hg19_v2_chr9_-_20382446_20382493	0.0938907	FOXA2_FOXJ3	ENST00000380321.1|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr6_-_105307417_105307435	0.0907487	FOXA2_FOXJ3	ENST00000524020.1|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
hg19_v2_chr1_+_52082751_52082781	0.0905921	FOXA2_FOXJ3	ENST00000447887.1|OSBPL9|ENSG00000117859.14|oxysterol binding protein-like 9 	ENST00000435686.2|OSBPL9|ENSG00000117859.14|oxysterol binding protein-like 9 	ENST00000428468.1|OSBPL9|ENSG00000117859.14|oxysterol binding protein-like 9 	ENST00000453295.1|OSBPL9|ENSG00000117859.14|oxysterol binding protein-like 9
hg19_v2_chr11_-_94227029_94227074	0.0897723	FOXA2_FOXJ3	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr10_+_111967345_111967442	0.0893359	FOXA2_FOXJ3	ENST00000332674.5|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein 	ENST00000453116.1|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chrX_+_24167746_24167811	0.0893161	FOXA2_FOXJ3	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr14_+_102276209_102276242	0.089283	FOXA2_FOXJ3	ENST00000445439.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000334743.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557095.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr5_+_71616188_71616230	0.089271	FOXA2_FOXJ3	ENST00000380639.5|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000543322.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000503868.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000510676.2|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000536805.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2
hg19_v2_chrX_+_40440146_40440268	0.0886524	FOXA2_FOXJ3	ENST00000535539.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000378438.4|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000436783.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000544975.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000535777.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000447485.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000423649.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2
hg19_v2_chr2_+_54342574_54342641	0.0874463	FOXA2_FOXJ3	ENST00000303536.4|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type 	ENST00000394666.3|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr4_-_111120132_111120167	0.0867109	FOXA2_FOXJ3	ENST00000506625.1|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr21_+_34602377_34602487	0.0865754	FOXA2_FOXJ3	ENST00000342101.3|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2 	ENST00000413881.1|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2 	ENST00000443073.1|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2
hg19_v2_chr2_+_110551851_110551977	0.0864715	FOXA2_FOXJ3	ENST00000272454.6|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000430736.1|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000016946.3|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000441344.1|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5
hg19_v2_chr1_+_203830703_203830743	0.085167	FOXA2_FOXJ3	ENST00000414487.2|SNRPE|ENSG00000182004.8|small nuclear ribonucleoprotein polypeptide E
hg19_v2_chr15_+_35270552_35270552	0.0849056	FOXA2_FOXJ3	ENST00000391457.2|AC114546.1|ENSG00000212768.2|HCG37415; PRO1914; Uncharacterized protein
hg19_v2_chr4_+_26862313_26862334	0.0848327	FOXA2_FOXJ3	ENST00000467087.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000382009.3|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000237364.5|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr2_-_170430366_170430390	0.0847306	FOXA2_FOXJ3	ENST00000453153.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000445210.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr12_+_27175476_27175518	0.0840872	FOXA2_FOXJ3	ENST00000546323.1|MED21|ENSG00000152944.4|mediator complex subunit 21 	ENST00000282892.3|MED21|ENSG00000152944.4|mediator complex subunit 21
hg19_v2_chr14_-_58894223_58894261	0.0837365	FOXA2_FOXJ3	ENST00000555593.1|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr6_-_56716686_56716749	0.0836622	FOXA2_FOXJ3	ENST00000520645.1|DST|ENSG00000151914.13|dystonin
hg19_v2_chr7_-_23571586_23571660	0.083589	FOXA2_FOXJ3	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chr8_+_27632083_27632186	0.0835693	FOXA2_FOXJ3	ENST00000519637.1|ESCO2|ENSG00000171320.10|establishment of sister chromatid cohesion N-acetyltransferase 2
hg19_v2_chr17_-_29641104_29641130	0.0835482	FOXA2_FOXJ3	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr6_-_168479839_168479904	0.0832217	FOXA2_FOXJ3	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr1_-_207095212_207095278	0.0830777	FOXA2_FOXJ3	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr5_-_55529115_55529186	0.0827967	FOXA2_FOXJ3	ENST00000513241.2|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55 	ENST00000341048.4|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55
hg19_v2_chr14_+_88851874_88852056	0.0826534	FOXA2_FOXJ3	ENST00000393545.4|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000356583.5|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000555401.1|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000553885.1|SPATA7|ENSG00000042317.12|spermatogenesis associated 7
hg19_v2_chr13_-_53024725_53024809	0.0825823	FOXA2_FOXJ3	ENST00000378060.4|VPS36|ENSG00000136100.8|vacuolar protein sorting 36 homolog (S. cerevisiae)
hg19_v2_chr2_-_37193606_37193633	0.0821576	FOXA2_FOXJ3	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr6_-_131949200_131949299	0.0814103	FOXA2_FOXJ3	ENST00000539158.1|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000368058.1|MED23|ENSG00000112282.13|mediator complex subunit 23
hg19_v2_chr10_-_69597810_69597827	0.0799011	FOXA2_FOXJ3	ENST00000483798.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr3_-_185641681_185641781	0.079858	FOXA2_FOXJ3	ENST00000259043.7|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr17_-_39183452_39183468	0.0792892	FOXA2_FOXJ3	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chrX_-_138914394_138914447	0.0788694	FOXA2_FOXJ3	ENST00000327569.3|ATP11C|ENSG00000101974.10|ATPase, class VI, type 11C 	ENST00000361648.2|ATP11C|ENSG00000101974.10|ATPase, class VI, type 11C 	ENST00000370543.1|ATP11C|ENSG00000101974.10|ATPase, class VI, type 11C 	ENST00000359686.2|ATP11C|ENSG00000101974.10|ATPase, class VI, type 11C
hg19_v2_chr1_-_241799232_241799232	0.078356	FOXA2_FOXJ3	ENST00000366553.1|CHML|ENSG00000203668.1|choroideremia-like (Rab escort protein 2)
hg19_v2_chr1_-_203274418_203274461	0.0783012	FOXA2_FOXJ3	ENST00000457348.1|RP11-134P9.1|ENSG00000233791.1|long intergenic non-protein coding RNA 1136
hg19_v2_chr2_+_27886330_27886344	0.078297	FOXA2_FOXJ3	ENST00000326019.6|SLC4A1AP|ENSG00000163798.9|solute carrier family 4 (anion exchanger), member 1, adaptor protein
hg19_v2_chr20_-_1165319_1165319	0.0772998	FOXA2_FOXJ3	ENST00000429036.1|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr12_-_51718436_51718458	0.0772273	FOXA2_FOXJ3	ENST00000544402.1|BIN2|ENSG00000110934.6|bridging integrator 2
hg19_v2_chr17_-_71223839_71223887	0.0770742	FOXA2_FOXJ3	ENST00000579872.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000580032.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A
hg19_v2_chr8_+_66933779_66933800	0.0768887	FOXA2_FOXJ3	ENST00000276570.5|DNAJC5B|ENSG00000147570.5|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
hg19_v2_chr14_+_58894103_58894124	0.0752719	FOXA2_FOXJ3	ENST00000354386.6|KIAA0586|ENSG00000100578.10|KIAA0586 	ENST00000556134.1|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr5_-_96209315_96209315	0.0750667	FOXA2_FOXJ3	ENST00000504056.1|CTD-2260A17.2|ENSG00000247121.2|Uncharacterized protein
hg19_v2_chr8_+_11666649_11666765	0.0740582	FOXA2_FOXJ3	ENST00000528643.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525777.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr22_-_25170444_25170444	0.0736482	FOXA2_FOXJ3	ENST00000533313.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3 	ENST00000527701.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr15_+_86087267_86087274	0.0735882	FOXA2_FOXJ3	ENST00000558166.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr5_+_70751442_70751456	0.0735245	FOXA2_FOXJ3	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr14_-_31926623_31926656	0.0731111	FOXA2_FOXJ3	ENST00000356180.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr8_-_50466973_50466973	0.0727601	FOXA2_FOXJ3	ENST00000520800.1|RP11-738G5.2|ENSG00000253206.1|Uncharacterized protein
hg19_v2_chr1_-_100231349_100231349	0.0726203	FOXA2_FOXJ3	ENST00000287474.5|FRRS1|ENSG00000156869.8|ferric-chelate reductase 1 	ENST00000414213.1|FRRS1|ENSG00000156869.8|ferric-chelate reductase 1
hg19_v2_chr8_-_95449155_95449188	0.0724667	FOXA2_FOXJ3	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr12_+_97306295_97306354	0.0723285	FOXA2_FOXJ3	ENST00000457368.2|NEDD1|ENSG00000139350.7|neural precursor cell expressed, developmentally down-regulated 1
hg19_v2_chrX_+_119029800_119029936	0.07187	FOXA2_FOXJ3	ENST00000371431.3|AKAP14|ENSG00000186471.8|A kinase (PRKA) anchor protein 14 	ENST00000371423.2|AKAP14|ENSG00000186471.8|A kinase (PRKA) anchor protein 14 	ENST00000371425.4|AKAP14|ENSG00000186471.8|A kinase (PRKA) anchor protein 14 	ENST00000394594.2|AKAP14|ENSG00000186471.8|A kinase (PRKA) anchor protein 14
hg19_v2_chr1_-_101360205_101360231	0.0717779	FOXA2_FOXJ3	ENST00000450240.1|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2
hg19_v2_chr2_+_175260451_175260513	0.0716333	FOXA2_FOXJ3	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr5_+_136070614_136070625	0.0715573	FOXA2_FOXJ3	ENST00000502421.1|CTB-1I21.1|ENSG00000250284.1|CTB-1I21.1
hg19_v2_chr1_+_33439268_33439268	0.0714927	FOXA2_FOXJ3	ENST00000594612.1|FKSG48|ENSG00000267885.1|FKSG48
hg19_v2_chr12_-_21928515_21928544	0.071252	FOXA2_FOXJ3	ENST00000537950.1|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr2_+_120770581_120770608	0.0711528	FOXA2_FOXJ3	ENST00000263713.5|EPB41L5|ENSG00000115109.9|erythrocyte membrane protein band 4.1 like 5
hg19_v2_chr1_+_78470530_78470551	0.070906	FOXA2_FOXJ3	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr11_+_112041253_112041253	0.0707217	FOXA2_FOXJ3	ENST00000532612.1|AP002884.3|ENSG00000272790.1|AP002884.3
hg19_v2_chr12_+_99038919_99038954	0.0705382	FOXA2_FOXJ3	ENST00000551964.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr14_-_31926701_31926734	0.0697221	FOXA2_FOXJ3	ENST00000310850.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr13_-_79980315_79980403	0.069362	FOXA2_FOXJ3	ENST00000438737.2|RBM26|ENSG00000139746.11|RNA binding motif protein 26
hg19_v2_chr13_+_73629107_73629148	0.0693226	FOXA2_FOXJ3	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr20_-_25677465_25677497	0.0692997	FOXA2_FOXJ3	ENST00000252979.5|ZNF337|ENSG00000130684.9|zinc finger protein 337
hg19_v2_chr19_-_46142362_46142504	0.0692352	FOXA2_FOXJ3	ENST00000586770.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2 	ENST00000591721.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2
hg19_v2_chr9_-_140142181_140142208	0.0692015	FOXA2_FOXJ3	ENST00000484720.1|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr6_-_42185583_42185618	0.0691998	FOXA2_FOXJ3	ENST00000053468.3|MRPS10|ENSG00000048544.5|mitochondrial ribosomal protein S10
hg19_v2_chr14_-_58893876_58893924	0.0686924	FOXA2_FOXJ3	ENST00000555097.1|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast) 	ENST00000555404.1|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr9_+_80850952_80851267	0.0686235	FOXA2_FOXJ3	ENST00000424347.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000415759.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000376597.4|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000277082.5|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000376598.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa
hg19_v2_chr10_+_94352956_94353043	0.0684962	FOXA2_FOXJ3	ENST00000260731.3|KIF11|ENSG00000138160.4|kinesin family member 11
hg19_v2_chr16_-_21442874_21442874	0.0684638	FOXA2_FOXJ3	ENST00000534903.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr7_-_117512264_117512281	0.0679291	FOXA2_FOXJ3	ENST00000454375.1|CTTNBP2|ENSG00000077063.6|cortactin binding protein 2
hg19_v2_chr4_-_140005443_140005650	0.0672692	FOXA2_FOXJ3	ENST00000510408.1|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000420916.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000358635.3|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr2_-_201729393_201729428	0.0665269	FOXA2_FOXJ3	ENST00000321356.4|CLK1|ENSG00000013441.11|CDC-like kinase 1
hg19_v2_chr6_-_131321863_131321907	0.0664119	FOXA2_FOXJ3	ENST00000528282.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr4_+_79567057_79567159	0.0662564	FOXA2_FOXJ3	ENST00000503259.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000507802.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr3_-_108248169_108248169	0.0662482	FOXA2_FOXJ3	ENST00000273353.3|MYH15|ENSG00000144821.5|myosin, heavy chain 15
hg19_v2_chr12_+_32687221_32687267	0.066235	FOXA2_FOXJ3	ENST00000525053.1|FGD4|ENSG00000139132.10|FYVE, RhoGEF and PH domain containing 4
hg19_v2_chr3_-_156272924_156272973	0.0661737	FOXA2_FOXJ3	ENST00000467789.1|SSR3|ENSG00000114850.2|signal sequence receptor, gamma (translocon-associated protein gamma) 	ENST00000265044.2|SSR3|ENSG00000114850.2|signal sequence receptor, gamma (translocon-associated protein gamma)
hg19_v2_chr9_+_108463234_108463265	0.0657489	FOXA2_FOXJ3	ENST00000374688.1|TMEM38B|ENSG00000095209.7|transmembrane protein 38B
hg19_v2_chr15_-_102192567_102192597	0.065181	FOXA2_FOXJ3	ENST00000333202.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000428002.2|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000559107.1|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000347970.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3
hg19_v2_chr2_+_46844290_46844384	0.0650412	FOXA2_FOXJ3	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr5_-_13944652_13944652	0.0650402	FOXA2_FOXJ3	ENST00000265104.4|DNAH5|ENSG00000039139.9|dynein, axonemal, heavy chain 5
hg19_v2_chr2_-_201729284_201729359	0.0646827	FOXA2_FOXJ3	ENST00000434813.2|CLK1|ENSG00000013441.11|CDC-like kinase 1
hg19_v2_chr1_+_145883868_145883868	0.0641072	FOXA2_FOXJ3	ENST00000447947.2|GPR89C|ENSG00000196644.8|G protein-coupled receptor 89C
hg19_v2_chr20_+_48552908_48552949	0.0640457	FOXA2_FOXJ3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr2_+_120770645_120770669	0.0640285	FOXA2_FOXJ3	ENST00000443902.2|EPB41L5|ENSG00000115109.9|erythrocyte membrane protein band 4.1 like 5
hg19_v2_chr1_+_172389836_172389874	0.0637099	FOXA2_FOXJ3	ENST00000460397.2|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr19_-_52307357_52307368	0.0636481	FOXA2_FOXJ3	ENST00000594900.1|FPR1|ENSG00000171051.4|formyl peptide receptor 1
hg19_v2_chr13_+_41885341_41885443	0.0632858	FOXA2_FOXJ3	ENST00000379406.3|NAA16|ENSG00000172766.14|N(alpha)-acetyltransferase 16, NatA auxiliary subunit 	ENST00000379367.3|NAA16|ENSG00000172766.14|N(alpha)-acetyltransferase 16, NatA auxiliary subunit 	ENST00000403412.3|NAA16|ENSG00000172766.14|N(alpha)-acetyltransferase 16, NatA auxiliary subunit
hg19_v2_chr1_-_24194771_24194851	0.0623227	FOXA2_FOXJ3	ENST00000374479.3|FUCA1|ENSG00000179163.11|fucosidase, alpha-L- 1, tissue
hg19_v2_chr19_-_51141196_51141302	0.061698	FOXA2_FOXJ3	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr8_-_101962777_101962805	0.0602489	FOXA2_FOXJ3	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr13_+_78315348_78315360	0.0598856	FOXA2_FOXJ3	ENST00000441784.1|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr2_+_219646462_219646498	0.0591676	FOXA2_FOXJ3	ENST00000258415.4|CYP27A1|ENSG00000135929.4|cytochrome P450, family 27, subfamily A, polypeptide 1
hg19_v2_chr4_+_86525299_86525314	0.0589426	FOXA2_FOXJ3	ENST00000512201.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr19_+_29493456_29493477	0.0587015	FOXA2_FOXJ3	ENST00000591143.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2	ENST00000592653.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2
hg19_v2_chr15_-_94614049_94614115	0.0573577	FOXA2_FOXJ3	ENST00000556447.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1	ENST00000555772.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1
hg19_v2_chr2_+_201170999_201171056	0.0571197	FOXA2_FOXJ3	ENST00000439395.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000444012.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr21_+_34602200_34602298	0.0570794	FOXA2_FOXJ3	ENST00000382264.3|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2 	ENST00000382241.3|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2 	ENST00000404220.3|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2 	ENST00000342136.4|IFNAR2|ENSG00000159110.15|interferon (alpha, beta and omega) receptor 2
hg19_v2_chr14_+_58894141_58894155	0.0566206	FOXA2_FOXJ3	ENST00000423743.3|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr1_+_15853308_15853413	0.0562066	FOXA2_FOXJ3	ENST00000375838.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375847.3|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375849.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16
hg19_v2_chr6_-_109330702_109330763	0.0557108	FOXA2_FOXJ3	ENST00000356644.7|SESN1|ENSG00000080546.9|sestrin 1
hg19_v2_chr3_-_58522880_58522905	0.0555895	FOXA2_FOXJ3	ENST00000474098.1|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain
hg19_v2_chr3_-_183145873_183146063	0.0554347	FOXA2_FOXJ3	ENST00000447025.2|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2 	ENST00000414362.2|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2 	ENST00000328913.3|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2
hg19_v2_chr10_-_69597915_69597926	0.0549234	FOXA2_FOXJ3	ENST00000225171.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr6_-_88038996_88038996	0.0545741	FOXA2_FOXJ3	ENST00000525899.1|GJB7|ENSG00000164411.6|gap junction protein, beta 7, 25kDa
hg19_v2_chr3_-_196987309_196987350	0.0545388	FOXA2_FOXJ3	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr21_-_16125773_16125787	0.0542482	FOXA2_FOXJ3	ENST00000454128.2|AF127936.3|ENSG00000232884.3|AF127936.3
hg19_v2_chr6_-_80247105_80247133	0.053453	FOXA2_FOXJ3	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr15_-_65321943_65321984	0.0534363	FOXA2_FOXJ3	ENST00000220058.4|MTFMT|ENSG00000103707.5|mitochondrial methionyl-tRNA formyltransferase
hg19_v2_chr2_-_170430277_170430361	0.0532584	FOXA2_FOXJ3	ENST00000438035.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000453929.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr7_+_6617039_6617136	0.0526229	FOXA2_FOXJ3	ENST00000405731.3|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396713.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396707.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000335965.6|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396709.1|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000483589.1|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396706.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4
hg19_v2_chr17_-_36003487_36003498	0.0525932	FOXA2_FOXJ3	ENST00000394367.3|DDX52|ENSG00000141141.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 	ENST00000349699.2|DDX52|ENSG00000141141.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
hg19_v2_chr14_+_50234827_50234886	0.052563	FOXA2_FOXJ3	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr10_+_90672113_90672113	0.0525583	FOXA2_FOXJ3	ENST00000371922.1|STAMBPL1|ENSG00000138134.7|STAM binding protein-like 1
hg19_v2_chr7_+_26332645_26332674	0.0512747	FOXA2_FOXJ3	ENST00000396376.1|SNX10|ENSG00000086300.11|sorting nexin 10
hg19_v2_chr17_+_67410832_67410871	0.0499869	FOXA2_FOXJ3	ENST00000590474.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr1_-_160492994_160493057	0.049928	FOXA2_FOXJ3	ENST00000368055.1|SLAMF6|ENSG00000162739.9|SLAM family member 6 	ENST00000368057.3|SLAMF6|ENSG00000162739.9|SLAM family member 6 	ENST00000368059.3|SLAMF6|ENSG00000162739.9|SLAM family member 6
hg19_v2_chr9_-_5830768_5830787	0.0499189	FOXA2_FOXJ3	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chr7_-_66460563_66460605	0.0487831	FOXA2_FOXJ3	ENST00000246868.2|SBDS|ENSG00000126524.5|Shwachman-Bodian-Diamond syndrome
hg19_v2_chr1_+_84609944_84609964	0.0484854	FOXA2_FOXJ3	ENST00000370685.3|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr14_+_102276132_102276178	0.0480747	FOXA2_FOXJ3	ENST00000350249.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557621.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556946.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr4_+_74269956_74270025	0.0471095	FOXA2_FOXJ3	ENST00000295897.4|ALB|ENSG00000163631.12|albumin 	ENST00000415165.2|ALB|ENSG00000163631.12|albumin 	ENST00000503124.1|ALB|ENSG00000163631.12|albumin 	ENST00000509063.1|ALB|ENSG00000163631.12|albumin 	ENST00000401494.3|ALB|ENSG00000163631.12|albumin
hg19_v2_chr7_+_12250886_12250933	0.0470008	FOXA2_FOXJ3	ENST00000444443.1|TMEM106B|ENSG00000106460.14|transmembrane protein 106B 	ENST00000396667.3|TMEM106B|ENSG00000106460.14|transmembrane protein 106B
hg19_v2_chr3_+_159570722_159570733	0.0467235	FOXA2_FOXJ3	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr19_-_9546177_9546224	0.0461668	FOXA2_FOXJ3	ENST00000592292.1|ZNF266|ENSG00000174652.13|zinc finger protein 266 	ENST00000588221.1|ZNF266|ENSG00000174652.13|zinc finger protein 266
hg19_v2_chr5_-_131132614_131132648	0.0461347	FOXA2_FOXJ3	ENST00000307968.7|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000307954.8|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr9_+_126131131_126131168	0.0461082	FOXA2_FOXJ3	ENST00000373629.2|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila)
hg19_v2_chr4_+_165675197_165675216	0.0455853	FOXA2_FOXJ3	ENST00000515485.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr11_-_121986923_121986923	0.045324	FOXA2_FOXJ3	ENST00000560104.1|BLID|ENSG00000259571.1|BH3-like motif containing, cell death inducer
hg19_v2_chr1_+_247670415_247670426	0.0452867	FOXA2_FOXJ3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr5_+_179135246_179135327	0.0449197	FOXA2_FOXJ3	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr6_-_130536774_130536792	0.044636	FOXA2_FOXJ3	ENST00000532763.1|SAMD3|ENSG00000164483.12|sterile alpha motif domain containing 3
hg19_v2_chr1_+_3607228_3607250	0.0442369	FOXA2_FOXJ3	ENST00000378285.1|TP73|ENSG00000078900.10|tumor protein p73 	ENST00000378280.1|TP73|ENSG00000078900.10|tumor protein p73 	ENST00000378288.4|TP73|ENSG00000078900.10|tumor protein p73
hg19_v2_chr19_+_35899569_35899727	0.0439692	FOXA2_FOXJ3	ENST00000600405.1|AC002511.1|ENSG00000205786.4|AC002511.1
hg19_v2_chr12_+_49297887_49297898	0.0439213	FOXA2_FOXJ3	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr7_-_14028488_14028516	0.0425292	FOXA2_FOXJ3	ENST00000405358.4|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr9_-_117420052_117420092	0.0424468	FOXA2_FOXJ3	ENST00000423632.1|RP11-402G3.5|ENSG00000230054.1|RP11-402G3.5
hg19_v2_chr5_+_95998673_95998713	0.0423691	FOXA2_FOXJ3	ENST00000514845.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr17_-_34195862_34195877	0.0423032	FOXA2_FOXJ3	ENST00000592980.1|C17orf66|ENSG00000172653.7|chromosome 17 open reading frame 66 	ENST00000587626.1|C17orf66|ENSG00000172653.7|chromosome 17 open reading frame 66
hg19_v2_chr14_-_80782219_80782250	0.0419748	FOXA2_FOXJ3	ENST00000553594.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr6_-_137494775_137494785	0.0417372	FOXA2_FOXJ3	ENST00000349184.4|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2 	ENST00000296980.2|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2 	ENST00000339602.3|IL22RA2|ENSG00000164485.10|interleukin 22 receptor, alpha 2
hg19_v2_chr2_-_14541060_14541087	0.0412918	FOXA2_FOXJ3	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr1_-_151345159_151345209	0.0411566	FOXA2_FOXJ3	ENST00000458566.1|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000447402.3|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000426705.2|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000435071.1|SELENBP1|ENSG00000143416.16|selenium binding protein 1 	ENST00000368868.5|SELENBP1|ENSG00000143416.16|selenium binding protein 1
hg19_v2_chr9_-_13175823_13175869	0.0410579	FOXA2_FOXJ3	ENST00000545857.1|MPDZ|ENSG00000107186.12|multiple PDZ domain protein
hg19_v2_chr1_+_212968025_212968164	0.0410401	FOXA2_FOXJ3	ENST00000530399.2|TATDN3|ENSG00000203705.6|TatD DNase domain containing 3
hg19_v2_chr2_-_111334678_111334762	0.0404271	FOXA2_FOXJ3	ENST00000329516.3|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6 	ENST00000330331.5|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6 	ENST00000446930.1|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6
hg19_v2_chr1_+_220960033_220960101	0.040247	FOXA2_FOXJ3	ENST00000366910.5|MARC1|ENSG00000186205.8|mitochondrial amidoxime reducing component 1
hg19_v2_chr6_-_29424848_29424848	0.0401721	FOXA2_FOXJ3	ENST00000377149.1|OR11A1|ENSG00000204694.6|olfactory receptor, family 11, subfamily A, member 1
hg19_v2_chr3_+_109128961_109129009	0.0400783	FOXA2_FOXJ3	ENST00000489670.1|RP11-702L6.4|ENSG00000228980.3|RP11-702L6.4
hg19_v2_chr2_-_27886676_27886714	0.0396968	FOXA2_FOXJ3	ENST00000337768.5|SUPT7L|ENSG00000119760.11|suppressor of Ty 7 (S. cerevisiae)-like
hg19_v2_chr4_+_79567233_79567248	0.039675	FOXA2_FOXJ3	ENST00000514130.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr4_-_153332886_153333030	0.0395138	FOXA2_FOXJ3	ENST00000603841.1|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr12_-_76879852_76879888	0.0390028	FOXA2_FOXJ3	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr1_+_3614591_3614622	0.0388267	FOXA2_FOXJ3	ENST00000378290.4|TP73|ENSG00000078900.10|tumor protein p73
hg19_v2_chr2_+_96257766_96257766	0.0387356	FOXA2_FOXJ3	ENST00000272395.2|TRIM43|ENSG00000144015.4|tripartite motif containing 43
hg19_v2_chr8_+_75512010_75512101	0.0384201	FOXA2_FOXJ3	ENST00000518190.1|RP11-758M4.1|ENSG00000254349.1|Uncharacterized protein  	ENST00000523118.1|RP11-758M4.1|ENSG00000254349.1|Uncharacterized protein
hg19_v2_chr1_+_224370873_224370968	0.0379731	FOXA2_FOXJ3	ENST00000323699.4|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1 	ENST00000391877.3|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1
hg19_v2_chr2_+_74120094_74120142	0.037724	FOXA2_FOXJ3	ENST00000409731.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000345517.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409918.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000442912.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409624.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric
hg19_v2_chr11_-_58378759_58378759	0.0368951	FOXA2_FOXJ3	ENST00000601906.1|AP001350.1|ENSG00000269570.1|Uncharacterized protein
hg19_v2_chrX_+_54947229_54947284	0.0368689	FOXA2_FOXJ3	ENST00000442098.1|TRO|ENSG00000067445.16|trophinin 	ENST00000430420.1|TRO|ENSG00000067445.16|trophinin 	ENST00000453081.1|TRO|ENSG00000067445.16|trophinin 	ENST00000173898.7|TRO|ENSG00000067445.16|trophinin 	ENST00000319167.8|TRO|ENSG00000067445.16|trophinin 	ENST00000375022.4|TRO|ENSG00000067445.16|trophinin 	ENST00000399736.1|TRO|ENSG00000067445.16|trophinin 	ENST00000440072.1|TRO|ENSG00000067445.16|trophinin 	ENST00000420798.2|TRO|ENSG00000067445.16|trophinin 	ENST00000431115.1|TRO|ENSG00000067445.16|trophinin 	ENST00000440759.1|TRO|ENSG00000067445.16|trophinin 	ENST00000375041.2|TRO|ENSG00000067445.16|trophinin
hg19_v2_chr2_+_3705785_3705806	0.0365315	FOXA2_FOXJ3	ENST00000252505.3|ALLC|ENSG00000151360.5|allantoicase
hg19_v2_chr14_+_58894706_58894720	0.0357387	FOXA2_FOXJ3	ENST00000261244.5|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr17_-_19290483_19290553	0.0353546	FOXA2_FOXJ3	ENST00000395592.2|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4 	ENST00000299610.4|MFAP4|ENSG00000166482.7|microfibrillar-associated protein 4
hg19_v2_chr22_-_25170683_25170683	0.0350013	FOXA2_FOXJ3	ENST00000332271.5|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr2_-_207078154_207078169	0.0335242	FOXA2_FOXJ3	ENST00000447845.1|GPR1|ENSG00000183671.8|G protein-coupled receptor 1
hg19_v2_chr6_+_168418553_168418581	0.0334456	FOXA2_FOXJ3	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr17_+_77030267_77030391	0.0333832	FOXA2_FOXJ3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr16_-_30621663_30621718	0.0333768	FOXA2_FOXJ3	ENST00000287461.3|ZNF689|ENSG00000156853.7|zinc finger protein 689
hg19_v2_chr3_-_189838670_189838718	0.0330346	FOXA2_FOXJ3	ENST00000319332.5|LEPREL1|ENSG00000090530.5|leprecan-like 1
hg19_v2_chr21_-_28215332_28215347	0.0328573	FOXA2_FOXJ3	ENST00000517777.1|ADAMTS1|ENSG00000154734.10|ADAM metallopeptidase with thrombospondin type 1 motif, 1
hg19_v2_chr6_-_131949305_131949389	0.0325643	FOXA2_FOXJ3	ENST00000368053.4|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000354577.4|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000403834.3|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000540546.1|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000368068.3|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000368060.3|MED23|ENSG00000112282.13|mediator complex subunit 23
hg19_v2_chr1_-_92371839_92371892	0.0325248	FOXA2_FOXJ3	ENST00000370399.2|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr12_-_96390063_96390076	0.0325146	FOXA2_FOXJ3	ENST00000541929.1|HAL|ENSG00000084110.6|histidine ammonia-lyase
hg19_v2_chr5_-_32313082_32313120	0.0319982	FOXA2_FOXJ3	ENST00000382142.3|MTMR12|ENSG00000150712.6|myotubularin related protein 12
hg19_v2_chr18_+_13382553_13382573	0.0316797	FOXA2_FOXJ3	ENST00000586222.1|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr14_-_95624227_95624347	0.0313511	FOXA2_FOXJ3	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chr14_-_60632162_60632211	0.0307283	FOXA2_FOXJ3	ENST00000557185.1|DHRS7|ENSG00000100612.9|dehydrogenase/reductase (SDR family) member 7
hg19_v2_chr13_-_46756351_46756459	0.0307173	FOXA2_FOXJ3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr1_+_185703513_185703683	0.0305684	FOXA2_FOXJ3	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr17_-_64216748_64216865	0.0305466	FOXA2_FOXJ3	ENST00000585162.1|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr15_-_31283798_31283851	0.0303966	FOXA2_FOXJ3	ENST00000435680.1|MTMR10|ENSG00000166912.12|myotubularin related protein 10 	ENST00000425768.1|MTMR10|ENSG00000166912.12|myotubularin related protein 10
hg19_v2_chr3_+_157827841_157827916	0.0302943	FOXA2_FOXJ3	ENST00000295930.3|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000471994.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000464171.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000312179.6|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000475278.2|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1
hg19_v2_chr3_-_189839467_189839520	0.0300466	FOXA2_FOXJ3	ENST00000426003.1|LEPREL1|ENSG00000090530.5|leprecan-like 1
hg19_v2_chrX_-_77150985_77151090	0.0299072	FOXA2_FOXJ3	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr11_-_6790286_6790286	0.0291349	FOXA2_FOXJ3	ENST00000338569.2|OR2AG2|ENSG00000188124.2|olfactory receptor, family 2, subfamily AG, member 2
hg19_v2_chr13_+_52598827_52598827	0.0289491	FOXA2_FOXJ3	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chr14_+_23938891_23938953	0.0285778	FOXA2_FOXJ3	ENST00000408901.3|NGDN|ENSG00000129460.11|neuroguidin, EIF4E binding protein 	ENST00000397154.3|NGDN|ENSG00000129460.11|neuroguidin, EIF4E binding protein 	ENST00000555128.1|NGDN|ENSG00000129460.11|neuroguidin, EIF4E binding protein
hg19_v2_chr9_-_70490107_70490246	0.0281975	FOXA2_FOXJ3	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr7_-_155326532_155326573	0.0275096	FOXA2_FOXJ3	ENST00000406197.1|CNPY1|ENSG00000146910.7|canopy FGF signaling regulator 1 	ENST00000321736.5|CNPY1|ENSG00000146910.7|canopy FGF signaling regulator 1
hg19_v2_chr21_+_30968360_30968360	0.0274227	FOXA2_FOXJ3	ENST00000333765.4|GRIK1-AS2|ENSG00000183653.4|GRIK1 antisense RNA 2
hg19_v2_chr13_+_98086445_98086493	0.0273755	FOXA2_FOXJ3	ENST00000245304.4|RAP2A|ENSG00000125249.6|RAP2A, member of RAS oncogene family
hg19_v2_chr6_+_56911336_56911347	0.0272118	FOXA2_FOXJ3	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr1_+_161123536_161123588	0.0272063	FOXA2_FOXJ3	ENST00000368003.5|UFC1|ENSG00000143222.7|ubiquitin-fold modifier conjugating enzyme 1
hg19_v2_chr17_-_26662440_26662463	0.026967	FOXA2_FOXJ3	ENST00000578122.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas)
hg19_v2_chr8_-_93978346_93978355	0.0266726	FOXA2_FOXJ3	ENST00000523580.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr9_+_124922171_124922224	0.0265785	FOXA2_FOXJ3	ENST00000373764.3|MORN5|ENSG00000185681.8|MORN repeat containing 5 	ENST00000536616.1|MORN5|ENSG00000185681.8|MORN repeat containing 5
hg19_v2_chr14_+_67291158_67291192	0.0264529	FOXA2_FOXJ3	ENST00000555456.1|GPHN|ENSG00000171723.11|gephyrin
hg19_v2_chr5_+_167182003_167182014	0.0262899	FOXA2_FOXJ3	ENST00000520394.1|TENM2|ENSG00000145934.11|teneurin transmembrane protein 2
hg19_v2_chrX_+_134975858_134975885	0.0262457	FOXA2_FOXJ3	ENST00000537770.1|SAGE1|ENSG00000181433.5|sarcoma antigen 1
hg19_v2_chr7_+_112063192_112063237	0.0261237	FOXA2_FOXJ3	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr17_+_7942424_7942474	0.026022	FOXA2_FOXJ3	ENST00000573359.1|ALOX15B|ENSG00000179593.11|arachidonate 15-lipoxygenase, type B
hg19_v2_chr10_+_124739964_124739994	0.0260116	FOXA2_FOXJ3	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr7_+_12544025_12544073	0.0259474	FOXA2_FOXJ3	ENST00000443874.1|AC005281.1|ENSG00000226690.2|AC005281.1	ENST00000424453.1|AC005281.1|ENSG00000226690.2|AC005281.1
hg19_v2_chr1_+_181452678_181452716	0.0258942	FOXA2_FOXJ3	ENST00000367570.1|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000526775.1|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000357570.5|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000358338.5|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000367567.4|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit
hg19_v2_chr17_-_34195889_34195899	0.0258809	FOXA2_FOXJ3	ENST00000311880.2|C17orf66|ENSG00000172653.7|chromosome 17 open reading frame 66
hg19_v2_chr2_+_135809835_135809874	0.0252236	FOXA2_FOXJ3	ENST00000264158.8|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000539493.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000442034.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000425393.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic)
hg19_v2_chr16_-_25122735_25122779	0.0252015	FOXA2_FOXJ3	ENST00000563176.1|RP11-449H11.1|ENSG00000260448.1|RP11-449H11.1
hg19_v2_chr2_-_128615681_128615737	0.0250639	FOXA2_FOXJ3	ENST00000409955.1|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D 	ENST00000272645.4|POLR2D|ENSG00000144231.6|polymerase (RNA) II (DNA directed) polypeptide D
hg19_v2_chr6_+_168399772_168399772	0.0250555	FOXA2_FOXJ3	ENST00000443060.2|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr3_-_150421676_150421723	0.0249603	FOXA2_FOXJ3	ENST00000474463.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr15_-_40600111_40600166	0.0248854	FOXA2_FOXJ3	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr9_+_120466610_120466628	0.0248724	FOXA2_FOXJ3	ENST00000394487.4|TLR4|ENSG00000136869.13|toll-like receptor 4
hg19_v2_chr5_-_36241900_36241976	0.0248285	FOXA2_FOXJ3	ENST00000381937.4|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000514504.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr3_+_119298429_119298454	0.0239525	FOXA2_FOXJ3	ENST00000478927.1|ADPRH|ENSG00000144843.7|ADP-ribosylarginine hydrolase
hg19_v2_chr19_-_50666404_50666424	0.0239241	FOXA2_FOXJ3	ENST00000600293.1|IZUMO2|ENSG00000161652.8|IZUMO family member 2
hg19_v2_chr8_+_21777159_21777221	0.023686	FOXA2_FOXJ3	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr14_+_32964258_32964283	0.0236578	FOXA2_FOXJ3	ENST00000556638.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr14_-_58894332_58894380	0.0235954	FOXA2_FOXJ3	ENST00000395159.2|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr5_-_36301984_36302010	0.0235743	FOXA2_FOXJ3	ENST00000502994.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000515759.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000296604.3|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like
hg19_v2_chr17_-_36831156_36831187	0.0234387	FOXA2_FOXJ3	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr15_-_74658519_74658558	0.0233766	FOXA2_FOXJ3	ENST00000450547.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000358632.4|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr16_+_48278178_48278336	0.0226884	FOXA2_FOXJ3	ENST00000285737.4|LONP2|ENSG00000102910.9|lon peptidase 2, peroxisomal 	ENST00000535754.1|LONP2|ENSG00000102910.9|lon peptidase 2, peroxisomal
hg19_v2_chrX_-_41449204_41449229	0.0226216	FOXA2_FOXJ3	ENST00000378179.3|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr5_+_141346385_141346437	0.0225856	FOXA2_FOXJ3	ENST00000513019.1|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000356143.1|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr21_+_29911640_29911665	0.0225803	FOXA2_FOXJ3	ENST00000412526.1|LINC00161|ENSG00000226935.2|long intergenic non-protein coding RNA 161 	ENST00000455939.1|LINC00161|ENSG00000226935.2|long intergenic non-protein coding RNA 161
hg19_v2_chr5_+_135468516_135468621	0.0224453	FOXA2_FOXJ3	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr1_-_8075693_8075757	0.0219366	FOXA2_FOXJ3	ENST00000467067.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr19_-_48613820_48613886	0.021555	FOXA2_FOXJ3	ENST00000596352.1|PLA2G4C|ENSG00000105499.9|phospholipase A2, group IVC (cytosolic, calcium-independent)
hg19_v2_chr1_-_168464875_168464884	0.0214052	FOXA2_FOXJ3	ENST00000422253.1|RP5-968D22.3|ENSG00000237658.1|RP5-968D22.3
hg19_v2_chr5_+_96212185_96212210	0.0214036	FOXA2_FOXJ3	ENST00000379904.4|ERAP2|ENSG00000164308.12|endoplasmic reticulum aminopeptidase 2
hg19_v2_chr4_+_158142750_158142836	0.0213618	FOXA2_FOXJ3	ENST00000505888.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000449365.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr3_+_119316689_119316710	0.0212309	FOXA2_FOXJ3	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr3_+_151591422_151591440	0.0212024	FOXA2_FOXJ3	ENST00000362032.5|SUCNR1|ENSG00000198829.5|succinate receptor 1
hg19_v2_chrX_+_10124977_10125036	0.021143	FOXA2_FOXJ3	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr1_-_40562908_40562931	0.0209072	FOXA2_FOXJ3	ENST00000527311.2|PPT1|ENSG00000131238.12|palmitoyl-protein thioesterase 1 	ENST00000449045.2|PPT1|ENSG00000131238.12|palmitoyl-protein thioesterase 1 	ENST00000372779.4|PPT1|ENSG00000131238.12|palmitoyl-protein thioesterase 1
hg19_v2_chr4_-_140223670_140223705	0.0208298	FOXA2_FOXJ3	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr9_-_130679257_130679336	0.0207042	FOXA2_FOXJ3	ENST00000361444.3|ST6GALNAC4|ENSG00000136840.14|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 	ENST00000335791.5|ST6GALNAC4|ENSG00000136840.14|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 	ENST00000343609.2|ST6GALNAC4|ENSG00000136840.14|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
hg19_v2_chr15_-_74658493_74658504	0.0203048	FOXA2_FOXJ3	ENST00000419019.2|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000569662.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr12_+_99038998_99039078	0.020291	FOXA2_FOXJ3	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr19_+_18208603_18208614	0.0194858	FOXA2_FOXJ3	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr3_+_107096188_107096236	0.0191252	FOXA2_FOXJ3	ENST00000261058.1|CCDC54|ENSG00000138483.1|coiled-coil domain containing 54
hg19_v2_chr1_+_144811744_144811748	0.0190809	FOXA2_FOXJ3	ENST00000338347.4|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9 	ENST00000440491.2|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9 	ENST00000375552.4|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9
hg19_v2_chrX_-_106959631_106959775	0.0185288	FOXA2_FOXJ3	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr13_-_46952645_46952780	0.0181238	FOXA2_FOXJ3	ENST00000439642.1|KIAA0226L|ENSG00000102445.14|KIAA0226-like
hg19_v2_chr2_+_171640291_171640311	0.0180951	FOXA2_FOXJ3	ENST00000409885.1|ERICH2|ENSG00000204334.7|glutamate-rich 2
hg19_v2_chr1_-_203274387_203274417	0.0171326	FOXA2_FOXJ3	ENST00000432511.1|RP11-134P9.1|ENSG00000233791.1|long intergenic non-protein coding RNA 1136
hg19_v2_chr5_+_140729649_140729828	0.0171091	FOXA2_FOXJ3	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr8_+_27631903_27632045	0.0170731	FOXA2_FOXJ3	ENST00000305188.8|ESCO2|ENSG00000171320.10|establishment of sister chromatid cohesion N-acetyltransferase 2
hg19_v2_chr1_+_246729724_246729794	0.0168657	FOXA2_FOXJ3	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr19_-_46148820_46148887	0.0166886	FOXA2_FOXJ3	ENST00000587152.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2
hg19_v2_chr2_-_220174166_220174370	0.0165145	FOXA2_FOXJ3	ENST00000409251.3|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N 	ENST00000451506.1|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N 	ENST00000295718.2|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N 	ENST00000446182.1|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N
hg19_v2_chr13_-_41240717_41240735	0.0162859	FOXA2_FOXJ3	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr17_+_67957848_67957861	0.0161027	FOXA2_FOXJ3	ENST00000455460.1|AC004562.1|ENSG00000237560.1|AC004562.1
hg19_v2_chr16_+_22517166_22517166	0.0152935	FOXA2_FOXJ3	ENST00000356156.3|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chrX_+_134975753_134975785	0.0152895	FOXA2_FOXJ3	ENST00000535938.1|SAGE1|ENSG00000181433.5|sarcoma antigen 1
hg19_v2_chr9_-_4859260_4859260	0.0150822	FOXA2_FOXJ3	ENST00000599351.1|AL158147.2|ENSG00000269305.1|HCG2011465; Uncharacterized protein
hg19_v2_chr10_-_61720640_61720671	0.01496	FOXA2_FOXJ3	ENST00000521074.1|C10orf40|ENSG00000235931.2|chromosome 10 open reading frame 40 	ENST00000444900.1|C10orf40|ENSG00000235931.2|chromosome 10 open reading frame 40
hg19_v2_chr6_-_88032795_88032795	0.0149186	FOXA2_FOXJ3	ENST00000296882.3|GJB7|ENSG00000164411.6|gap junction protein, beta 7, 25kDa
hg19_v2_chr4_+_89206076_89206103	0.0149084	FOXA2_FOXJ3	ENST00000500009.2|RP11-10L7.1|ENSG00000246375.2|RP11-10L7.1
hg19_v2_chr17_-_3595181_3595296	0.0148969	FOXA2_FOXJ3	ENST00000552050.1|P2RX5|ENSG00000083454.17|purinergic receptor P2X, ligand-gated ion channel, 5
hg19_v2_chr15_+_42697065_42697078	0.0148072	FOXA2_FOXJ3	ENST00000565559.1|CAPN3|ENSG00000092529.18|calpain 3, (p94)
hg19_v2_chr20_+_58203664_58203713	0.0144677	FOXA2_FOXJ3	ENST00000541461.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr7_+_47834908_47835022	0.0143785	FOXA2_FOXJ3	ENST00000418326.2|C7orf69|ENSG00000136275.6|chromosome 7 open reading frame 69
hg19_v2_chr8_-_93978216_93978292	0.0142434	FOXA2_FOXJ3	ENST00000517751.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000524107.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr16_+_66410244_66410294	0.014225	FOXA2_FOXJ3	ENST00000562048.1|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium) 	ENST00000568155.2|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr1_-_177939348_177939395	0.014133	FOXA2_FOXJ3	ENST00000464631.2|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr3_-_15382875_15382889	0.014128	FOXA2_FOXJ3	ENST00000408919.3|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated)
hg19_v2_chr6_+_12958137_12958234	0.0141082	FOXA2_FOXJ3	ENST00000457702.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1 	ENST00000379345.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr7_-_105221898_105221948	0.0140793	FOXA2_FOXJ3	ENST00000486180.1|EFCAB10|ENSG00000185055.6|EF-hand calcium binding domain 10 	ENST00000485614.1|EFCAB10|ENSG00000185055.6|EF-hand calcium binding domain 10 	ENST00000480514.1|EFCAB10|ENSG00000185055.6|EF-hand calcium binding domain 10
hg19_v2_chr4_+_71494461_71494461	0.0140693	FOXA2_FOXJ3	ENST00000396073.3|ENAM|ENSG00000132464.7|enamelin
hg19_v2_chr1_-_100643765_100643829	0.0140543	FOXA2_FOXJ3	ENST00000370137.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000370138.1|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39 	ENST00000342895.3|LRRC39|ENSG00000122477.8|leucine rich repeat containing 39
hg19_v2_chr15_-_55657428_55657474	0.0135783	FOXA2_FOXJ3	ENST00000568543.1|CCPG1|ENSG00000260916.1|cell cycle progression 1
hg19_v2_chr14_-_24020858_24020988	0.0133307	FOXA2_FOXJ3	ENST00000419474.3|ZFHX2|ENSG00000136367.12|zinc finger homeobox 2
hg19_v2_chr17_-_29641084_29641103	0.0131658	FOXA2_FOXJ3	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr3_+_11267691_11267721	0.0128925	FOXA2_FOXJ3	ENST00000413416.1|HRH1|ENSG00000196639.6|histamine receptor H1
hg19_v2_chr3_+_186692745_186692824	0.0127299	FOXA2_FOXJ3	ENST00000438590.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr9_-_140196703_140196744	0.0126379	FOXA2_FOXJ3	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr1_+_24646002_24646056	0.0123564	FOXA2_FOXJ3	ENST00000356046.2|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr12_-_96390108_96390143	0.0121401	FOXA2_FOXJ3	ENST00000538703.1|HAL|ENSG00000084110.6|histidine ammonia-lyase 	ENST00000261208.3|HAL|ENSG00000084110.6|histidine ammonia-lyase
hg19_v2_chr8_-_41909496_41909512	0.0121198	FOXA2_FOXJ3	ENST00000265713.2|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000406337.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000396930.3|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000485568.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000426524.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A
hg19_v2_chr2_+_201171064_201171099	0.0118453	FOXA2_FOXJ3	ENST00000451764.2|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr1_-_229230644_229230665	0.011662	FOXA2_FOXJ3	ENST00000433734.1|RP5-1065P14.2|ENSG00000236975.1|RP5-1065P14.2
hg19_v2_chr14_+_38241588_38241588	0.0113414	FOXA2_FOXJ3	ENST00000476979.1|TTC6|ENSG00000139865.12|tetratricopeptide repeat domain 6
hg19_v2_chr19_-_44160768_44160794	0.0112582	FOXA2_FOXJ3	ENST00000593447.1|PLAUR|ENSG00000011422.7|plasminogen activator, urokinase receptor
hg19_v2_chr12_+_2986359_2986421	0.011159	FOXA2_FOXJ3	ENST00000538636.1|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000461997.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000489288.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000366285.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000538700.1|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1
hg19_v2_chr20_+_45338126_45338303	0.0103625	FOXA2_FOXJ3	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr14_+_57046530_57046602	0.0103393	FOXA2_FOXJ3	ENST00000536419.1|TMEM260|ENSG00000070269.9|transmembrane protein 260 	ENST00000538838.1|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr1_-_89736434_89736546	0.0100776	FOXA2_FOXJ3	ENST00000370459.3|GBP5|ENSG00000154451.10|guanylate binding protein 5
hg19_v2_chr3_-_156272872_156272923	0.00993661	FOXA2_FOXJ3	ENST00000476217.1|SSR3|ENSG00000114850.2|signal sequence receptor, gamma (translocon-associated protein gamma)
hg19_v2_chr2_+_149402553_149402568	0.0099298	FOXA2_FOXJ3	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr17_-_39942940_39943017	0.00988336	FOXA2_FOXJ3	ENST00000310706.5|JUP|ENSG00000173801.12|junction plakoglobin 	ENST00000393931.3|JUP|ENSG00000173801.12|junction plakoglobin 	ENST00000424457.1|JUP|ENSG00000173801.12|junction plakoglobin 	ENST00000591690.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr5_-_131132658_131132719	0.00928489	FOXA2_FOXJ3	ENST00000514667.1|CTC-432M15.3|ENSG00000273217.1|Folliculin-interacting protein 1  	ENST00000511848.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000510461.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr1_+_144811943_144811943	0.00902994	FOXA2_FOXJ3	ENST00000281815.8|NBPF9|ENSG00000168614.13|neuroblastoma breakpoint family, member 9
hg19_v2_chr22_-_38699003_38699017	0.00901132	FOXA2_FOXJ3	ENST00000451964.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr6_-_114194483_114194525	0.00799671	FOXA2_FOXJ3	ENST00000434296.2|RP1-249H1.4|ENSG00000227502.2|RP1-249H1.4
hg19_v2_chr3_-_169587621_169587728	0.00797774	FOXA2_FOXJ3	ENST00000523069.1|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31 	ENST00000316428.5|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31 	ENST00000264676.5|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31
hg19_v2_chr1_+_24645865_24645881	0.00791483	FOXA2_FOXJ3	ENST00000342072.4|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr4_+_90032651_90032699	0.00774386	FOXA2_FOXJ3	ENST00000603357.1|RP11-84C13.1|ENSG00000271359.1|RP11-84C13.1
hg19_v2_chr3_+_147657764_147657816	0.00773631	FOXA2_FOXJ3	ENST00000467198.1|RP11-71N10.1|ENSG00000239922.1|RP11-71N10.1	ENST00000485006.1|RP11-71N10.1|ENSG00000239922.1|RP11-71N10.1
hg19_v2_chr15_+_69857515_69857531	0.00771672	FOXA2_FOXJ3	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr4_+_159236462_159236471	0.00727249	FOXA2_FOXJ3	ENST00000460056.2|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1
hg19_v2_chr14_+_19377522_19377522	0.00713823	FOXA2_FOXJ3	ENST00000550708.1|OR11H12|ENSG00000257115.1|olfactory receptor, family 11, subfamily H, member 12
hg19_v2_chr10_+_52152766_52152766	0.00641588	FOXA2_FOXJ3	ENST00000596442.1|AC069547.2|ENSG00000269700.1|Uncharacterized protein
hg19_v2_chr2_+_102413726_102413769	0.00636832	FOXA2_FOXJ3	ENST00000350878.4|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr16_+_22516172_22516172	0.0063053	FOXA2_FOXJ3	ENST00000543407.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr17_+_41363854_41363916	0.0060855	FOXA2_FOXJ3	ENST00000588693.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000588659.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000541594.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000536052.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000331615.3|TMEM106A|ENSG00000184988.4|transmembrane protein 106A
hg19_v2_chr11_+_58695174_58695188	0.00557696	FOXA2_FOXJ3	ENST00000317391.4|GLYATL1|ENSG00000166840.9|glycine-N-acyltransferase-like 1
hg19_v2_chr12_+_54892550_54892591	0.00543143	FOXA2_FOXJ3	ENST00000545638.2|NCKAP1L|ENSG00000123338.8|NCK-associated protein 1-like
hg19_v2_chr1_+_95616933_95616933	0.00527831	FOXA2_FOXJ3	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr1_+_24646263_24646304	0.00504174	FOXA2_FOXJ3	ENST00000524724.1|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr17_-_26662464_26662519	0.00494486	FOXA2_FOXJ3	ENST00000579419.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000585313.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000395418.3|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000578985.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000577498.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000585089.1|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas) 	ENST00000357896.3|IFT20|ENSG00000109083.9|intraflagellar transport 20 homolog (Chlamydomonas)
hg19_v2_chr12_+_120740119_120740124	0.00471772	FOXA2_FOXJ3	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr11_-_110561721_110561721	0.00455263	FOXA2_FOXJ3	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr1_-_3566627_3566676	0.00439941	FOXA2_FOXJ3	ENST00000419924.2|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000270708.7|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr18_+_54814288_54814354	0.00428721	FOXA2_FOXJ3	ENST00000585477.1|BOD1L2|ENSG00000228075.4|biorientation of chromosomes in cell division 1-like 2
hg19_v2_chr9_+_127054254_127054276	0.00412773	FOXA2_FOXJ3	ENST00000422297.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6
hg19_v2_chr15_-_40600026_40600061	0.00408619	FOXA2_FOXJ3	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr7_+_62809239_62809239	0.00381156	FOXA2_FOXJ3	ENST00000456890.1|AC006455.1|ENSG00000230000.1|AC006455.1
hg19_v2_chr4_+_160188306_160188323	0.00371246	FOXA2_FOXJ3	ENST00000510510.1|RAPGEF2|ENSG00000109756.4|Rap guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr1_-_186365908_186365908	0.00359942	FOXA2_FOXJ3	ENST00000598663.1|AL596220.1|ENSG00000268662.1|Uncharacterized protein
hg19_v2_chr15_+_56657613_56657651	0.00358852	FOXA2_FOXJ3	ENST00000352903.2|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000537232.1|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000561221.2|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000558083.2|TEX9|ENSG00000151575.10|testis expressed 9
hg19_v2_chrX_+_120181457_120181474	0.00356787	FOXA2_FOXJ3	ENST00000328078.1|GLUD2|ENSG00000182890.3|glutamate dehydrogenase 2
hg19_v2_chr14_-_60632011_60632035	0.00335308	FOXA2_FOXJ3	ENST00000554101.1|DHRS7|ENSG00000100612.9|dehydrogenase/reductase (SDR family) member 7 	ENST00000557137.1|DHRS7|ENSG00000100612.9|dehydrogenase/reductase (SDR family) member 7
hg19_v2_chr19_+_12721760_12721778	0.00265377	FOXA2_FOXJ3	ENST00000600752.1|ZNF791|ENSG00000173875.9|zinc finger protein 791 	ENST00000540038.1|ZNF791|ENSG00000173875.9|zinc finger protein 791
hg19_v2_chr4_-_186456652_186456668	0.0019771	FOXA2_FOXJ3	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr16_+_27078219_27078229	0.00180867	FOXA2_FOXJ3	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr9_-_110540419_110540419	0.00178093	FOXA2_FOXJ3	ENST00000398726.3|AL162389.1|ENSG00000214645.3|Uncharacterized protein
hg19_v2_chr1_+_174844645_174844684	0.00159954	FOXA2_FOXJ3	ENST00000486220.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr12_-_7596735_7596781	0.00159203	FOXA2_FOXJ3	ENST00000416109.2|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000396630.1|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000313599.3|CD163L1|ENSG00000177675.4|CD163 molecule-like 1
hg19_v2_chr5_+_95998714_95998744	0.00132005	FOXA2_FOXJ3	ENST00000506811.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000514055.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr5_-_115872124_115872139	0.00125498	FOXA2_FOXJ3	ENST00000515009.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr19_+_52839490_52839508	0.00122701	FOXA2_FOXJ3	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr20_-_45976816_45976860	0.00118242	FOXA2_FOXJ3	ENST00000441977.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr12_+_21525818_21525862	0.00102903	FOXA2_FOXJ3	ENST00000240652.3|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000542023.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000537593.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide
hg19_v2_chr2_+_181988560_181988577	0.000960616	FOXA2_FOXJ3	ENST00000424170.1|AC104820.2|ENSG00000234663.1|AC104820.2	ENST00000435411.1|AC104820.2|ENSG00000234663.1|AC104820.2
hg19_v2_chrX_+_77154935_77155012	0.000748184	FOXA2_FOXJ3	ENST00000481445.1|COX7B|ENSG00000131174.4|cytochrome c oxidase subunit VIIb
hg19_v2_chr12_-_118490217_118490269	0.000673458	FOXA2_FOXJ3	ENST00000542304.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
