hg19_v2_chr1_+_178694300_178694346	0.144396	AGCUUAU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr5_+_67511524_67511628	0.123473	AGCUUAU	ENST00000521381.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 	ENST00000521657.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr7_-_92463210_92463231	0.116018	AGCUUAU	ENST00000265734.4|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chrX_+_123095155_123095179	0.112975	AGCUUAU	ENST00000371160.1|STAG2|ENSG00000101972.14|stromal antigen 2 	ENST00000435103.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr15_-_50978965_50979012	0.109747	AGCUUAU	ENST00000560955.1|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7 	ENST00000313478.7|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7
hg19_v2_chr1_-_207224307_207224422	0.107939	AGCUUAU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr3_-_24536253_24536328	0.102704	AGCUUAU	ENST00000428492.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000396671.2|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000431815.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000418247.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000416420.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000356447.4|THRB|ENSG00000151090.13|thyroid hormone receptor, beta
hg19_v2_chr8_-_57123815_57123867	0.101937	AGCUUAU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr20_+_56884752_56884799	0.0990001	AGCUUAU	ENST00000244040.3|RAB22A|ENSG00000124209.3|RAB22A, member RAS oncogene family
hg19_v2_chr7_-_91875358_91875480	0.0974842	AGCUUAU	ENST00000458177.1|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing 	ENST00000394507.1|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing 	ENST00000340022.2|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing 	ENST00000444960.1|KRIT1|ENSG00000001631.10|KRIT1, ankyrin repeat containing
hg19_v2_chrX_+_72783026_72783049	0.0956678	AGCUUAU	ENST00000373504.6|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1 	ENST00000373502.5|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1
hg19_v2_chr19_+_1286097_1286153	0.0937211	AGCUUAU	ENST00000215368.2|EFNA2|ENSG00000099617.2|ephrin-A2
hg19_v2_chr16_+_69599861_69599887	0.0908547	AGCUUAU	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr8_+_87354945_87355012	0.0821072	AGCUUAU	ENST00000517970.1|WWP1|ENSG00000123124.9|WW domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr3_+_110790590_110790603	0.0797629	AGCUUAU	ENST00000485303.1|PVRL3|ENSG00000177707.6|poliovirus receptor-related 3
hg19_v2_chr3_+_152017181_152017229	0.0759975	AGCUUAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr10_+_70320413_70320413	0.0742117	AGCUUAU	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr3_+_141205852_141205929	0.0673138	AGCUUAU	ENST00000286364.3|RASA2|ENSG00000155903.7|RAS p21 protein activator 2 	ENST00000452898.1|RASA2|ENSG00000155903.7|RAS p21 protein activator 2
hg19_v2_chr13_+_28813645_28813770	0.0664539	AGCUUAU	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr9_+_36036430_36036430	0.0640801	AGCUUAU	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr15_+_66161871_66161893	0.0633987	AGCUUAU	ENST00000569896.1|RAB11A|ENSG00000103769.5|RAB11A, member RAS oncogene family
hg19_v2_chr15_-_33360085_33360256	0.0624602	AGCUUAU	ENST00000334528.9|FMN1|ENSG00000248905.4|formin 1
hg19_v2_chr2_-_201936302_201936416	0.0614585	AGCUUAU	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr10_+_112631547_112631596	0.0563603	AGCUUAU	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chr17_-_30669138_30669208	0.0537668	AGCUUAU	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr2_-_180129484_180129574	0.0533265	AGCUUAU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr12_+_12764773_12764852	0.0522979	AGCUUAU	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chr7_+_102715315_102715380	0.0517373	AGCUUAU	ENST00000428183.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000323716.3|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000441711.2|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000454559.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000425331.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10 	ENST00000541300.1|ARMC10|ENSG00000170632.9|armadillo repeat containing 10
hg19_v2_chr11_+_101981169_101981210	0.0512711	AGCUUAU	ENST00000526343.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000282441.5|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000537274.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000345877.2|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chrX_-_20284958_20285039	0.0507213	AGCUUAU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr4_-_140098339_140098392	0.0506837	AGCUUAU	ENST00000394235.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr4_+_124320665_124320702	0.0497811	AGCUUAU	ENST00000394339.2|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr2_+_47630108_47630211	0.0489003	AGCUUAU	ENST00000233146.2|MSH2|ENSG00000095002.8|mutS homolog 2 	ENST00000454849.1|MSH2|ENSG00000095002.8|mutS homolog 2 	ENST00000543555.1|MSH2|ENSG00000095002.8|mutS homolog 2
hg19_v2_chr4_-_103748880_103749047	0.0482056	AGCUUAU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr2_-_71454185_71454242	0.0481134	AGCUUAU	ENST00000244221.8|PAIP2B|ENSG00000124374.8|poly(A) binding protein interacting protein 2B
hg19_v2_chr6_+_119215308_119215391	0.0461181	AGCUUAU	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr14_+_57735614_57735629	0.0460541	AGCUUAU	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chrX_-_24045303_24045303	0.0459426	AGCUUAU	ENST00000328046.8|KLHL15|ENSG00000174010.9|kelch-like family member 15
hg19_v2_chr12_+_27932803_27932953	0.0447558	AGCUUAU	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr11_+_12308447_12308447	0.0441375	AGCUUAU	ENST00000256186.2|MICALCL|ENSG00000133808.4|MICAL C-terminal like
hg19_v2_chr2_+_228678550_228678570	0.0433256	AGCUUAU	ENST00000409189.3|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20 	ENST00000358813.4|CCL20|ENSG00000115009.7|chemokine (C-C motif) ligand 20
hg19_v2_chrX_+_100805496_100805514	0.0430957	AGCUUAU	ENST00000372829.3|ARMCX1|ENSG00000126947.7|armadillo repeat containing, X-linked 1
hg19_v2_chr17_+_30264014_30264086	0.0426912	AGCUUAU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr7_-_44924939_44924993	0.0422201	AGCUUAU	ENST00000395699.2|PURB|ENSG00000146676.5|purine-rich element binding protein B
hg19_v2_chr11_+_33278811_33279133	0.0419243	AGCUUAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr3_-_113465065_113465147	0.0388385	AGCUUAU	ENST00000497255.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000478020.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000240922.3|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000493900.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit
hg19_v2_chr7_-_139876812_139876860	0.038784	AGCUUAU	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr1_+_218519577_218519594	0.0380209	AGCUUAU	ENST00000366930.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2 	ENST00000366929.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2
hg19_v2_chr13_-_41768654_41768714	0.0374445	AGCUUAU	ENST00000379483.3|KBTBD7|ENSG00000120696.8|kelch repeat and BTB (POZ) domain containing 7
hg19_v2_chr9_+_21802542_21802624	0.0361107	AGCUUAU	ENST00000380172.4|MTAP|ENSG00000099810.14|methylthioadenosine phosphorylase
hg19_v2_chr4_+_113152881_113152912	0.0354788	AGCUUAU	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr12_+_65563329_65563373	0.0352665	AGCUUAU	ENST00000308330.2|LEMD3|ENSG00000174106.2|LEM domain containing 3
hg19_v2_chr1_+_169764163_169764240	0.0346025	AGCUUAU	ENST00000413811.2|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112 	ENST00000359326.4|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112 	ENST00000456684.1|C1orf112|ENSG00000000460.12|chromosome 1 open reading frame 112
hg19_v2_chr2_+_86947296_86947434	0.0345001	AGCUUAU	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr5_+_86564739_86564791	0.033537	AGCUUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr5_+_179921430_179921461	0.0330808	AGCUUAU	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr1_-_220101944_220102000	0.0321154	AGCUUAU	ENST00000366926.3|SLC30A10|ENSG00000196660.6|solute carrier family 30, member 10 	ENST00000536992.1|SLC30A10|ENSG00000196660.6|solute carrier family 30, member 10
hg19_v2_chr7_+_8008418_8008443	0.0316696	AGCUUAU	ENST00000223145.5|GLCCI1|ENSG00000106415.8|glucocorticoid induced transcript 1
hg19_v2_chr1_+_113010056_113010056	0.0289403	AGCUUAU	ENST00000369686.5|WNT2B|ENSG00000134245.13|wingless-type MMTV integration site family, member 2B
hg19_v2_chr3_-_72496035_72496069	0.0283171	AGCUUAU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr10_+_94050913_94050965	0.028006	AGCUUAU	ENST00000358935.2|MARCH5|ENSG00000198060.5|membrane-associated ring finger (C3HC4) 5
hg19_v2_chr5_+_10564432_10564580	0.0274842	AGCUUAU	ENST00000296657.5|ANKRD33B|ENSG00000164236.7|ankyrin repeat domain 33B
hg19_v2_chr14_+_57046500_57046529	0.0267432	AGCUUAU	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr3_+_28283069_28283168	0.0261787	AGCUUAU	ENST00000466830.1|CMC1|ENSG00000187118.8|C-x(9)-C motif containing 1 	ENST00000423894.1|CMC1|ENSG00000187118.8|C-x(9)-C motif containing 1
hg19_v2_chr10_-_75910789_75910821	0.0260918	AGCUUAU	ENST00000355264.4|AP3M1|ENSG00000185009.8|adaptor-related protein complex 3, mu 1 subunit
hg19_v2_chr18_-_29522989_29523104	0.0258304	AGCUUAU	ENST00000582539.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000283351.4|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000582513.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8
hg19_v2_chr4_+_144257915_144258009	0.025721	AGCUUAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr10_-_14590644_14590669	0.0254372	AGCUUAU	ENST00000378470.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr16_+_22019404_22019604	0.0245482	AGCUUAU	ENST00000542527.2|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000569656.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000562695.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52
hg19_v2_chr6_+_142468361_142468382	0.024468	AGCUUAU	ENST00000367630.4|VTA1|ENSG00000009844.11|vesicle (multivesicular body) trafficking 1
hg19_v2_chr15_-_55881135_55881192	0.024221	AGCUUAU	ENST00000302000.6|PYGO1|ENSG00000171016.7|pygopus family PHD finger 1
hg19_v2_chr18_+_67956135_67956144	0.0241178	AGCUUAU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr4_-_89744457_89744512	0.0236294	AGCUUAU	ENST00000395002.2|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr9_+_15553055_15553101	0.0235495	AGCUUAU	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr4_-_100867864_100867889	0.0230718	AGCUUAU	ENST00000442697.2|DNAJB14|ENSG00000164031.12|DnaJ (Hsp40) homolog, subfamily B, member 14
hg19_v2_chr5_+_154238096_154238119	0.0223733	AGCUUAU	ENST00000517568.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000524105.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000285896.6|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr15_+_59063478_59063561	0.0220329	AGCUUAU	ENST00000559228.1|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B 	ENST00000450403.2|FAM63B|ENSG00000128923.6|family with sequence similarity 63, member B
hg19_v2_chr6_+_36562132_36562154	0.021538	AGCUUAU	ENST00000373715.6|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3 	ENST00000339436.7|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3
hg19_v2_chrX_+_46696372_46696406	0.0215089	AGCUUAU	ENST00000218340.3|RP2|ENSG00000102218.5|retinitis pigmentosa 2 (X-linked recessive)
hg19_v2_chr3_-_107809816_107809885	0.0195199	AGCUUAU	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr10_+_76871454_76871467	0.0194641	AGCUUAU	ENST00000372687.4|SAMD8|ENSG00000156671.8|sterile alpha motif domain containing 8
hg19_v2_chr17_+_38278530_38278605	0.019064	AGCUUAU	ENST00000398532.4|MSL1|ENSG00000188895.7|male-specific lethal 1 homolog (Drosophila)
hg19_v2_chr1_+_213123915_213123955	0.0190516	AGCUUAU	ENST00000366968.4|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000490792.1|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr5_-_38595498_38595514	0.0183218	AGCUUAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr10_+_72164135_72164135	0.0177267	AGCUUAU	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr11_+_32851487_32851496	0.0169217	AGCUUAU	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr5_-_168006591_168006638	0.0159619	AGCUUAU	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr3_-_52713729_52713784	0.0156918	AGCUUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr8_-_117886955_117887105	0.0156827	AGCUUAU	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr2_+_170683942_170683972	0.0153662	AGCUUAU	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr2_-_37193606_37193633	0.015204	AGCUUAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr12_-_117319236_117319252	0.0151599	AGCUUAU	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr12_-_45269430_45269440	0.0150164	AGCUUAU	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr5_-_89770582_89770603	0.0148825	AGCUUAU	ENST00000316610.6|MBLAC2|ENSG00000176055.9|metallo-beta-lactamase domain containing 2
hg19_v2_chr6_+_4021554_4021656	0.0146404	AGCUUAU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr7_+_89975979_89976052	0.0139918	AGCUUAU	ENST00000257659.8|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000222511.6|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative) 	ENST00000417207.1|GTPBP10|ENSG00000105793.11|GTP-binding protein 10 (putative)
hg19_v2_chr11_-_110167352_110167447	0.013727	AGCUUAU	ENST00000533991.1|RDX|ENSG00000137710.10|radixin 	ENST00000528498.1|RDX|ENSG00000137710.10|radixin 	ENST00000405097.1|RDX|ENSG00000137710.10|radixin 	ENST00000528900.1|RDX|ENSG00000137710.10|radixin 	ENST00000530301.1|RDX|ENSG00000137710.10|radixin 	ENST00000343115.4|RDX|ENSG00000137710.10|radixin
hg19_v2_chr16_+_57392684_57392702	0.0135523	AGCUUAU	ENST00000219235.4|CCL22|ENSG00000102962.4|chemokine (C-C motif) ligand 22
hg19_v2_chr1_+_222791417_222791455	0.0134298	AGCUUAU	ENST00000344922.5|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344441.6|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3 	ENST00000344507.1|MIA3|ENSG00000154305.12|melanoma inhibitory activity family, member 3
hg19_v2_chr1_+_33005020_33005077	0.0133832	AGCUUAU	ENST00000373510.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A 	ENST00000316459.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A
hg19_v2_chr2_+_198318147_198318182	0.0128318	AGCUUAU	ENST00000263960.2|COQ10B|ENSG00000115520.4|coenzyme Q10 homolog B (S. cerevisiae)
hg19_v2_chr8_+_56014949_56015048	0.0122245	AGCUUAU	ENST00000327381.6|XKR4|ENSG00000206579.7|XK, Kell blood group complex subunit-related family, member 4
hg19_v2_chr16_-_4292071_4292088	0.0122214	AGCUUAU	ENST00000399609.3|SRL|ENSG00000185739.9|sarcalumenin
hg19_v2_chr17_-_32906388_32906388	0.0117761	AGCUUAU	ENST00000357754.1|C17orf102|ENSG00000197322.1|chromosome 17 open reading frame 102
hg19_v2_chr5_+_172483347_172483407	0.0113888	AGCUUAU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr12_+_69864129_69864222	0.0109556	AGCUUAU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr4_-_147442982_147443019	0.0106764	AGCUUAU	ENST00000511374.1|SLC10A7|ENSG00000120519.10|solute carrier family 10, member 7 	ENST00000264986.3|SLC10A7|ENSG00000120519.10|solute carrier family 10, member 7
hg19_v2_chr9_-_99180597_99180614	0.0106761	AGCUUAU	ENST00000375256.4|ZNF367|ENSG00000165244.6|zinc finger protein 367
hg19_v2_chr17_+_35766965_35767030	0.010234	AGCUUAU	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr17_+_36452989_36453152	0.00967146	AGCUUAU	ENST00000312513.5|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45 	ENST00000582535.1|MRPL45|ENSG00000174100.5|mitochondrial ribosomal protein L45
hg19_v2_chr1_-_115632035_115632149	0.009303	AGCUUAU	ENST00000433172.1|TSPAN2|ENSG00000134198.5|tetraspanin 2 	ENST00000369514.2|TSPAN2|ENSG00000134198.5|tetraspanin 2 	ENST00000369516.2|TSPAN2|ENSG00000134198.5|tetraspanin 2 	ENST00000369515.2|TSPAN2|ENSG00000134198.5|tetraspanin 2
hg19_v2_chr4_+_99916765_99916776	0.00904759	AGCUUAU	ENST00000296411.6|METAP1|ENSG00000164024.7|methionyl aminopeptidase 1
hg19_v2_chr10_-_12238071_12238154	0.00900158	AGCUUAU	ENST00000491614.1|NUDT5|ENSG00000165609.8|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENST00000537776.1|NUDT5|ENSG00000165609.8|nudix (nucleoside diphosphate linked moiety X)-type motif 5
hg19_v2_chr11_+_120207787_120207962	0.00887935	AGCUUAU	ENST00000397843.2|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12 	ENST00000356641.3|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr3_-_18466787_18466861	0.0087643	AGCUUAU	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr4_+_38665810_38665827	0.00842712	AGCUUAU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr13_-_36920420_36920574	0.00793528	AGCUUAU	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr5_+_125758813_125758845	0.00780303	AGCUUAU	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chrX_-_80065146_80065250	0.00705628	AGCUUAU	ENST00000373275.4|BRWD3|ENSG00000165288.10|bromodomain and WD repeat domain containing 3
hg19_v2_chr2_-_64371546_64371588	0.00679038	AGCUUAU	ENST00000358912.4|PELI1|ENSG00000197329.7|pellino E3 ubiquitin protein ligase 1
hg19_v2_chr11_-_79151695_79151710	0.00658886	AGCUUAU	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr12_-_123011536_123011547	0.00653553	AGCUUAU	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chr12_+_22778009_22778112	0.00650979	AGCUUAU	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr12_-_9913489_9913506	0.00633003	AGCUUAU	ENST00000228434.3|CD69|ENSG00000110848.4|CD69 molecule 	ENST00000536709.1|CD69|ENSG00000110848.4|CD69 molecule
hg19_v2_chr12_-_42538657_42538720	0.00588129	AGCUUAU	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr18_-_60987220_60987386	0.00576876	AGCUUAU	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr16_-_20911641_20911720	0.00555141	AGCUUAU	ENST00000564349.1|ERI2|ENSG00000196678.9|ERI1 exoribonuclease family member 2 	ENST00000324344.4|DCUN1D3|ENSG00000188215.5|DCN1, defective in cullin neddylation 1, domain containing 3
hg19_v2_chr1_+_39456895_39456986	0.00530852	AGCUUAU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr1_+_224301787_224301836	0.00517483	AGCUUAU	ENST00000366862.5|FBXO28|ENSG00000143756.7|F-box protein 28 	ENST00000424254.2|FBXO28|ENSG00000143756.7|F-box protein 28
hg19_v2_chr13_+_73632897_73632930	0.00501448	AGCUUAU	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr7_+_18535346_18535399	0.00461085	AGCUUAU	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr16_-_75498553_75498635	0.00437786	AGCUUAU	ENST00000569276.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000357613.4|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000561878.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000567194.1|RP11-77K12.1|ENSG00000261717.1|Uncharacterized protein  	ENST00000566980.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A
hg19_v2_chr9_-_123476719_123476810	0.00303942	AGCUUAU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr1_+_61547894_61547980	0.00260108	AGCUUAU	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr1_+_203274639_203274664	0.00241609	AGCUUAU	ENST00000290551.4|BTG2|ENSG00000159388.5|BTG family, member 2
hg19_v2_chr11_-_94964354_94964374	0.00236722	AGCUUAU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr8_+_9413410_9413451	0.00193461	AGCUUAU	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr2_-_158485387_158485517	0.0018968	AGCUUAU	ENST00000243349.8|ACVR1C|ENSG00000123612.11|activin A receptor, type IC
hg19_v2_chr9_-_86595503_86595569	0.00174415	AGCUUAU	ENST00000376281.4|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376264.2|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr17_+_60536002_60536040	0.00150219	AGCUUAU	ENST00000582809.1|TLK2|ENSG00000146872.13|tousled-like kinase 2
hg19_v2_chr10_-_119134918_119134986	0.00136271	AGCUUAU	ENST00000334464.5|PDZD8|ENSG00000165650.7|PDZ domain containing 8
hg19_v2_chr11_+_109292846_109292875	0.00128437	AGCUUAU	ENST00000327419.6|C11orf87|ENSG00000185742.6|chromosome 11 open reading frame 87
hg19_v2_chr3_+_186648274_186648301	0.00109511	AGCUUAU	ENST00000169298.3|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr8_-_10697281_10697365	0.000997763	AGCUUAU	ENST00000524114.1|PINX1|ENSG00000254093.4|PIN2/TERF1 interacting, telomerase inhibitor 1 	ENST00000553390.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7 	ENST00000554914.1|SOX7|ENSG00000258724.1|Transcription factor SOX-7; Uncharacterized protein; cDNA FLJ58508, highly similar to Transcription factor SOX-7
hg19_v2_chr7_-_30029367_30029474	0.000900946	AGCUUAU	ENST00000242059.5|SCRN1|ENSG00000136193.12|secernin 1
hg19_v2_chr9_-_34589700_34589709	0.000777275	AGCUUAU	ENST00000351266.4|CNTFR|ENSG00000122756.10|ciliary neurotrophic factor receptor
hg19_v2_chr3_-_160283348_160283376	0.000374048	AGCUUAU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr5_+_139493665_139493718	0.00026074	AGCUUAU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chrX_-_19140677_19140760	0.000124827	AGCUUAU	ENST00000357544.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379869.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000360279.4|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379873.2|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379878.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000354791.3|GPR64|ENSG00000173698.13|G protein-coupled receptor 64 	ENST00000379876.1|GPR64|ENSG00000173698.13|G protein-coupled receptor 64
