hg19_v2_chr15_-_49447835_49447858	0.903166	ACAGUAU	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chr2_+_172778952_172779004	0.723953	ACAGUAU	ENST00000392584.1|HAT1|ENSG00000128708.8|histone acetyltransferase 1 	ENST00000264108.4|HAT1|ENSG00000128708.8|histone acetyltransferase 1
hg19_v2_chr15_+_52311398_52311461	0.692497	ACAGUAU	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr2_+_46926048_46926095	0.634228	ACAGUAU	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr2_+_201676256_201676323	0.576206	ACAGUAU	ENST00000452206.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000410110.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000409600.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr17_-_4269768_4269835	0.557693	ACAGUAU	ENST00000396981.2|UBE2G1|ENSG00000132388.8|ubiquitin-conjugating enzyme E2G 1
hg19_v2_chr11_-_82782861_82782949	0.543791	ACAGUAU	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr3_-_101232019_101232085	0.541761	ACAGUAU	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr13_-_48575443_48575464	0.535174	ACAGUAU	ENST00000378654.3|SUCLA2|ENSG00000136143.9|succinate-CoA ligase, ADP-forming, beta subunit
hg19_v2_chr12_+_67663056_67663067	0.511422	ACAGUAU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr6_+_126112001_126112062	0.504586	ACAGUAU	ENST00000392477.2|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr5_-_59189545_59189625	0.488072	ACAGUAU	ENST00000340635.6|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr5_+_65440032_65440099	0.461682	ACAGUAU	ENST00000334121.6|SREK1|ENSG00000153914.11|splicing regulatory glutamine/lysine-rich protein 1
hg19_v2_chr1_+_76540386_76540445	0.446219	ACAGUAU	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr6_+_64281906_64281922	0.435507	ACAGUAU	ENST00000370651.3|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr3_+_88188254_88188254	0.430203	ACAGUAU	ENST00000309495.5|ZNF654|ENSG00000175105.5|zinc finger protein 654
hg19_v2_chr18_-_18691739_18691812	0.402564	ACAGUAU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr18_-_19180681_19180711	0.401441	ACAGUAU	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chr6_+_87865262_87865339	0.399535	ACAGUAU	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr1_+_113161778_113161820	0.39054	ACAGUAU	ENST00000263168.3|CAPZA1|ENSG00000116489.8|capping protein (actin filament) muscle Z-line, alpha 1
hg19_v2_chr9_-_3525968_3526016	0.389365	ACAGUAU	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr18_+_9136758_9136852	0.381779	ACAGUAU	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr1_+_101361626_101361698	0.378119	ACAGUAU	ENST00000370112.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chrX_-_108976521_108976632	0.375179	ACAGUAU	ENST00000469796.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000502391.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000508092.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000340800.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000348502.6|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr15_-_34502278_34502318	0.368181	ACAGUAU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr6_+_136172820_136172846	0.366336	ACAGUAU	ENST00000308191.6|PDE7B|ENSG00000171408.9|phosphodiesterase 7B
hg19_v2_chr6_+_134210243_134210276	0.355898	ACAGUAU	ENST00000367882.4|TCF21|ENSG00000118526.6|transcription factor 21
hg19_v2_chr5_-_132299313_132299334	0.346864	ACAGUAU	ENST00000265343.5|AFF4|ENSG00000072364.8|AF4/FMR2 family, member 4
hg19_v2_chr1_-_78148324_78148365	0.341961	ACAGUAU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chrX_-_135056216_135056227	0.338057	ACAGUAU	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr5_+_52776228_52776245	0.336274	ACAGUAU	ENST00000256759.3|FST|ENSG00000134363.7|follistatin
hg19_v2_chr2_-_11484710_11484812	0.335127	ACAGUAU	ENST00000315872.6|ROCK2|ENSG00000134318.9|Rho-associated, coiled-coil containing protein kinase 2
hg19_v2_chr17_-_58603568_58603610	0.333879	ACAGUAU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr2_+_198380289_198380305	0.331516	ACAGUAU	ENST00000233892.4|MOB4|ENSG00000115540.10|MOB family member 4, phocein 	ENST00000409916.1|MOB4|ENSG00000115540.10|MOB family member 4, phocein
hg19_v2_chr17_-_38821373_38821440	0.318984	ACAGUAU	ENST00000394052.3|KRT222|ENSG00000213424.4|keratin 222
hg19_v2_chr8_+_125486939_125487026	0.315761	ACAGUAU	ENST00000303545.3|RNF139|ENSG00000170881.4|ring finger protein 139
hg19_v2_chr10_-_98346801_98346812	0.315158	ACAGUAU	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr12_-_31479045_31479074	0.312124	ACAGUAU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr5_-_90679145_90679176	0.309317	ACAGUAU	ENST00000265138.3|ARRDC3|ENSG00000113369.4|arrestin domain containing 3
hg19_v2_chr15_-_35280426_35280503	0.308526	ACAGUAU	ENST00000559564.1|ZNF770|ENSG00000198146.4|zinc finger protein 770 	ENST00000356321.4|ZNF770|ENSG00000198146.4|zinc finger protein 770
hg19_v2_chr1_-_186649543_186649563	0.308478	ACAGUAU	ENST00000367468.5|PTGS2|ENSG00000073756.7|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr7_-_82073109_82073150	0.308303	ACAGUAU	ENST00000356860.3|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr18_+_22006580_22006614	0.306453	ACAGUAU	ENST00000284202.4|IMPACT|ENSG00000154059.5|impact RWD domain protein
hg19_v2_chr22_+_29279552_29279586	0.305556	ACAGUAU	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr5_-_108745689_108745712	0.302778	ACAGUAU	ENST00000361189.2|PJA2|ENSG00000198961.5|praja ring finger 2, E3 ubiquitin protein ligase
hg19_v2_chr4_+_6784401_6784510	0.302473	ACAGUAU	ENST00000425103.1|KIAA0232|ENSG00000170871.7|KIAA0232 	ENST00000307659.5|KIAA0232|ENSG00000170871.7|KIAA0232
hg19_v2_chrX_-_119694538_119694555	0.298637	ACAGUAU	ENST00000371322.5|CUL4B|ENSG00000158290.12|cullin 4B
hg19_v2_chr3_+_107241783_107241850	0.29293	ACAGUAU	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr5_+_65018017_65018088	0.286892	ACAGUAU	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr1_-_85156216_85156240	0.283118	ACAGUAU	ENST00000342203.3|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein 	ENST00000370612.4|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr15_-_48470558_48470714	0.282355	ACAGUAU	ENST00000324324.7|MYEF2|ENSG00000104177.13|myelin expression factor 2
hg19_v2_chr6_+_122720681_122720713	0.278384	ACAGUAU	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr11_-_95522907_95522989	0.274855	ACAGUAU	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr10_+_60094735_60094749	0.273911	ACAGUAU	ENST00000373910.4|UBE2D1|ENSG00000072401.10|ubiquitin-conjugating enzyme E2D 1
hg19_v2_chr10_+_98592009_98592061	0.273827	ACAGUAU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr10_+_27793197_27793247	0.271622	ACAGUAU	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr12_+_50135588_50135605	0.270992	ACAGUAU	ENST00000423828.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6 	ENST00000550445.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr8_+_26149007_26149061	0.258053	ACAGUAU	ENST00000380737.3|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000524169.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr15_+_44719394_44719579	0.248776	ACAGUAU	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr2_-_24583168_24583179	0.246236	ACAGUAU	ENST00000361999.3|ITSN2|ENSG00000198399.10|intersectin 2
hg19_v2_chr12_+_104359576_104359601	0.244124	ACAGUAU	ENST00000392872.3|TDG|ENSG00000139372.10|thymine-DNA glycosylase 	ENST00000436021.2|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr6_+_64345698_64345750	0.243824	ACAGUAU	ENST00000506783.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000481385.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000515594.1|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000494284.2|PHF3|ENSG00000118482.7|PHD finger protein 3 	ENST00000262043.3|PHF3|ENSG00000118482.7|PHD finger protein 3
hg19_v2_chr3_-_195808952_195808972	0.240316	ACAGUAU	ENST00000540528.1|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000392396.3|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000535031.1|TFRC|ENSG00000072274.8|transferrin receptor 	ENST00000420415.1|TFRC|ENSG00000072274.8|transferrin receptor
hg19_v2_chr13_+_33160553_33160564	0.235858	ACAGUAU	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr2_+_170590321_170590408	0.235704	ACAGUAU	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr5_+_77656339_77656362	0.231149	ACAGUAU	ENST00000538629.1|SCAMP1|ENSG00000085365.13|secretory carrier membrane protein 1
hg19_v2_chr4_+_144257915_144258009	0.230792	ACAGUAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr11_-_95657231_95657459	0.229779	ACAGUAU	ENST00000409459.1|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000352297.7|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000393223.3|MTMR2|ENSG00000087053.14|myotubularin related protein 2 	ENST00000346299.5|MTMR2|ENSG00000087053.14|myotubularin related protein 2
hg19_v2_chr8_-_119634141_119634234	0.229355	ACAGUAU	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr1_+_204494618_204494676	0.22922	ACAGUAU	ENST00000367180.1|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse) 	ENST00000391947.2|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse)
hg19_v2_chr7_-_135662056_135662114	0.225288	ACAGUAU	ENST00000393085.3|MTPN|ENSG00000105887.10|myotrophin 	ENST00000435723.1|MTPN|ENSG00000105887.10|myotrophin
hg19_v2_chr3_-_88108192_88108203	0.225143	ACAGUAU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr20_-_14318248_14318264	0.221009	ACAGUAU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr8_-_95908902_95908927	0.219578	ACAGUAU	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr2_+_60983361_60983418	0.215414	ACAGUAU	ENST00000238714.3|PAPOLG|ENSG00000115421.8|poly(A) polymerase gamma
hg19_v2_chr12_-_30848914_30848948	0.21296	ACAGUAU	ENST00000256079.4|IPO8|ENSG00000133704.5|importin 8
hg19_v2_chr11_+_32914579_32914724	0.21285	ACAGUAU	ENST00000399302.2|QSER1|ENSG00000060749.10|glutamine and serine rich 1
hg19_v2_chrX_-_80065146_80065250	0.21254	ACAGUAU	ENST00000373275.4|BRWD3|ENSG00000165288.10|bromodomain and WD repeat domain containing 3
hg19_v2_chr7_-_127032741_127032777	0.212272	ACAGUAU	ENST00000393313.1|ZNF800|ENSG00000048405.5|zinc finger protein 800 	ENST00000265827.3|ZNF800|ENSG00000048405.5|zinc finger protein 800 	ENST00000434602.1|ZNF800|ENSG00000048405.5|zinc finger protein 800
hg19_v2_chrX_-_99891796_99891811	0.208887	ACAGUAU	ENST00000373020.4|TSPAN6|ENSG00000000003.10|tetraspanin 6
hg19_v2_chr11_+_109964087_109964123	0.208353	ACAGUAU	ENST00000278590.3|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr3_-_122233723_122233797	0.207058	ACAGUAU	ENST00000493510.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000344337.6|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000476916.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000465882.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5)
hg19_v2_chr10_+_60272814_60272900	0.206343	ACAGUAU	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr8_-_68255912_68255952	0.204027	ACAGUAU	ENST00000262215.3|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 	ENST00000519436.1|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
hg19_v2_chr5_+_61602055_61602083	0.201186	ACAGUAU	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr21_+_37692481_37692558	0.19691	ACAGUAU	ENST00000400485.1|MORC3|ENSG00000159256.8|MORC family CW-type zinc finger 3
hg19_v2_chrX_+_102631248_102631335	0.19679	ACAGUAU	ENST00000361298.4|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372645.3|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372635.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr5_-_40755987_40756077	0.196093	ACAGUAU	ENST00000337702.4|TTC33|ENSG00000113638.8|tetratricopeptide repeat domain 33
hg19_v2_chr1_+_39456895_39456986	0.195468	ACAGUAU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr14_-_53162361_53162513	0.194193	ACAGUAU	ENST00000395686.3|ERO1L|ENSG00000197930.8|ERO1-like (S. cerevisiae)
hg19_v2_chr1_+_193028552_193028589	0.192946	ACAGUAU	ENST00000400968.2|TROVE2|ENSG00000116747.8|TROVE domain family, member 2 	ENST00000432079.1|TROVE2|ENSG00000116747.8|TROVE domain family, member 2
hg19_v2_chr2_-_180129484_180129574	0.187731	ACAGUAU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr6_-_8064567_8064652	0.187685	ACAGUAU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr13_-_41240717_41240735	0.187446	ACAGUAU	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr1_+_87170247_87170276	0.182747	ACAGUAU	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chrX_-_77041685_77041716	0.181784	ACAGUAU	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr6_-_86352642_86352709	0.181121	ACAGUAU	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr2_+_198365122_198365137	0.180831	ACAGUAU	ENST00000604458.1|HSPE1-MOB4|ENSG00000270757.1|HSPE1-MOB4 readthrough
hg19_v2_chr10_+_112631547_112631596	0.180699	ACAGUAU	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chr4_-_105416039_105416065	0.180504	ACAGUAU	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr9_-_115095883_115095947	0.180323	ACAGUAU	ENST00000450374.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374255.2|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000334318.6|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374257.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3
hg19_v2_chr5_+_127419449_127419540	0.178501	ACAGUAU	ENST00000262461.2|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2 	ENST00000343225.4|SLC12A2|ENSG00000064651.9|solute carrier family 12 (sodium/potassium/chloride transporter), member 2
hg19_v2_chr4_-_71705590_71705662	0.175063	ACAGUAU	ENST00000254799.6|GRSF1|ENSG00000132463.9|G-rich RNA sequence binding factor 1
hg19_v2_chr5_+_96271141_96271168	0.172755	ACAGUAU	ENST00000231368.5|LNPEP|ENSG00000113441.11|leucyl/cystinyl aminopeptidase
hg19_v2_chr17_-_38574169_38574202	0.17259	ACAGUAU	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr8_-_57123815_57123867	0.167408	ACAGUAU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr2_-_39348137_39348212	0.165005	ACAGUAU	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr8_+_61429416_61429502	0.164401	ACAGUAU	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr16_-_65155833_65155976	0.161378	ACAGUAU	ENST00000566827.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000394156.3|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000562998.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast)
hg19_v2_chr9_-_117880477_117880536	0.160333	ACAGUAU	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr2_-_160472952_160473080	0.160305	ACAGUAU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr1_+_199996702_199996732	0.160062	ACAGUAU	ENST00000367362.3|NR5A2|ENSG00000116833.9|nuclear receptor subfamily 5, group A, member 2
hg19_v2_chr3_+_152017181_152017229	0.156025	ACAGUAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr4_-_103748880_103749047	0.155944	ACAGUAU	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chrX_+_24167746_24167811	0.152956	ACAGUAU	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr16_-_46723066_46723121	0.150683	ACAGUAU	ENST00000299138.7|VPS35|ENSG00000069329.11|vacuolar protein sorting 35 homolog (S. cerevisiae)
hg19_v2_chr7_-_139876812_139876860	0.150628	ACAGUAU	ENST00000397560.2|JHDM1D|ENSG00000006459.6|lysine (K)-specific demethylase 7A
hg19_v2_chr17_-_60142609_60142657	0.149943	ACAGUAU	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr2_+_238875597_238875724	0.149285	ACAGUAU	ENST00000272930.4|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000448502.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000416292.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000409633.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000414443.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000409953.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative) 	ENST00000409332.1|UBE2F|ENSG00000184182.14|ubiquitin-conjugating enzyme E2F (putative)
hg19_v2_chr15_-_83876758_83876770	0.148146	ACAGUAU	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr12_+_69004619_69004699	0.1471	ACAGUAU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr3_+_23986748_23986761	0.14693	ACAGUAU	ENST00000312521.4|NR1D2|ENSG00000174738.8|nuclear receptor subfamily 1, group D, member 2
hg19_v2_chr7_+_116312411_116312502	0.14558	ACAGUAU	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr1_+_178694300_178694346	0.144417	ACAGUAU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr5_-_56247935_56247959	0.143976	ACAGUAU	ENST00000381199.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381226.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381213.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3
hg19_v2_chr3_-_125094093_125094198	0.143508	ACAGUAU	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr9_-_14693417_14693469	0.143059	ACAGUAU	ENST00000380916.4|ZDHHC21|ENSG00000175893.7|zinc finger, DHHC-type containing 21
hg19_v2_chr5_+_139505520_139505523	0.141754	ACAGUAU	ENST00000333305.3|IGIP|ENSG00000182700.3|IgA-inducing protein
hg19_v2_chr5_+_138940742_138940769	0.141397	ACAGUAU	ENST00000398733.3|UBE2D2|ENSG00000131508.11|ubiquitin-conjugating enzyme E2D 2 	ENST00000253815.2|UBE2D2|ENSG00000131508.11|ubiquitin-conjugating enzyme E2D 2 	ENST00000505007.1|UBE2D2|ENSG00000131508.11|ubiquitin-conjugating enzyme E2D 2
hg19_v2_chr13_-_50367057_50367142	0.13999	ACAGUAU	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chrX_-_109561294_109561467	0.139617	ACAGUAU	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr10_+_5454505_5454540	0.137243	ACAGUAU	ENST00000355029.4|NET1|ENSG00000173848.14|neuroepithelial cell transforming 1
hg19_v2_chr12_+_95611516_95611527	0.137071	ACAGUAU	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chrX_+_103411189_103411301	0.135656	ACAGUAU	ENST00000493442.1|FAM199X|ENSG00000123575.8|family with sequence similarity 199, X-linked
hg19_v2_chr16_+_66400533_66400545	0.135643	ACAGUAU	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chrX_+_21857717_21857763	0.135489	ACAGUAU	ENST00000379484.5|MBTPS2|ENSG00000012174.7|membrane-bound transcription factor peptidase, site 2
hg19_v2_chr4_+_78078304_78078406	0.134278	ACAGUAU	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr14_-_64010046_64010107	0.133838	ACAGUAU	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr10_+_89622870_89622870	0.133377	ACAGUAU	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr5_-_38595498_38595514	0.133259	ACAGUAU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr10_+_88516396_88516426	0.133042	ACAGUAU	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr11_+_9406169_9406210	0.132354	ACAGUAU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr1_-_103574024_103574063	0.131738	ACAGUAU	ENST00000512756.1|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000370096.3|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000358392.2|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1 	ENST00000353414.4|COL11A1|ENSG00000060718.14|collagen, type XI, alpha 1
hg19_v2_chr12_+_105501487_105501562	0.131375	ACAGUAU	ENST00000332180.5|KIAA1033|ENSG00000136051.9|KIAA1033
hg19_v2_chr10_+_31608054_31608156	0.129759	ACAGUAU	ENST00000320985.10|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000361642.5|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000560721.2|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000558440.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000424869.1|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1 	ENST00000542815.3|ZEB1|ENSG00000148516.17|zinc finger E-box binding homeobox 1
hg19_v2_chr8_-_82598511_82598570	0.12971	ACAGUAU	ENST00000449740.2|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000311489.4|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000521360.1|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000519964.1|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000518202.1|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1
hg19_v2_chr7_-_120498357_120498456	0.129204	ACAGUAU	ENST00000415871.1|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000222747.3|TSPAN12|ENSG00000106025.4|tetraspanin 12 	ENST00000430985.1|TSPAN12|ENSG00000106025.4|tetraspanin 12
hg19_v2_chr3_-_141944398_141944465	0.129111	ACAGUAU	ENST00000544571.1|GK5|ENSG00000175066.11|glycerol kinase 5 (putative) 	ENST00000392993.2|GK5|ENSG00000175066.11|glycerol kinase 5 (putative)
hg19_v2_chr15_-_65809581_65809617	0.127659	ACAGUAU	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr2_-_206950781_206950947	0.127633	ACAGUAU	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr2_-_68479614_68479685	0.127225	ACAGUAU	ENST00000234310.3|PPP3R1|ENSG00000221823.6|protein phosphatase 3, regulatory subunit B, alpha
hg19_v2_chr12_-_90049828_90049847	0.127055	ACAGUAU	ENST00000261173.2|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1 	ENST00000348959.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr19_-_49622348_49622407	0.126832	ACAGUAU	ENST00000408991.2|C19orf73|ENSG00000221916.2|chromosome 19 open reading frame 73
hg19_v2_chr1_+_198126093_198126207	0.126648	ACAGUAU	ENST00000367385.4|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000442588.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7 	ENST00000538004.1|NEK7|ENSG00000151414.10|NIMA-related kinase 7
hg19_v2_chr13_+_20532807_20532841	0.126286	ACAGUAU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr7_-_79082867_79082900	0.126159	ACAGUAU	ENST00000419488.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2 	ENST00000354212.4|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr1_+_186798073_186798147	0.125846	ACAGUAU	ENST00000367466.3|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent) 	ENST00000442353.2|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent)
hg19_v2_chr19_+_34663397_34663473	0.124953	ACAGUAU	ENST00000540746.2|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000544216.3|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000433627.5|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr3_+_150804676_150804697	0.124424	ACAGUAU	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chrX_+_133507327_133507386	0.124366	ACAGUAU	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr4_-_54930790_54930857	0.124263	ACAGUAU	ENST00000263921.3|CHIC2|ENSG00000109220.6|cysteine-rich hydrophobic domain 2
hg19_v2_chr5_-_89825328_89825422	0.123699	ACAGUAU	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr7_+_8008418_8008443	0.123639	ACAGUAU	ENST00000223145.5|GLCCI1|ENSG00000106415.8|glucocorticoid induced transcript 1
hg19_v2_chr2_-_100106419_100106522	0.122138	ACAGUAU	ENST00000393445.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed) 	ENST00000258428.3|REV1|ENSG00000135945.5|REV1, polymerase (DNA directed)
hg19_v2_chr9_+_4985228_4985245	0.121187	ACAGUAU	ENST00000381652.3|JAK2|ENSG00000096968.8|Janus kinase 2
hg19_v2_chr18_+_67956135_67956144	0.120121	ACAGUAU	ENST00000397942.3|SOCS6|ENSG00000170677.5|suppressor of cytokine signaling 6
hg19_v2_chr12_+_4430371_4430429	0.12	ACAGUAU	ENST00000179259.4|C12orf5|ENSG00000078237.4|chromosome 12 open reading frame 5
hg19_v2_chr4_-_129208940_129208976	0.119077	ACAGUAU	ENST00000296425.5|PGRMC2|ENSG00000164040.12|progesterone receptor membrane component 2
hg19_v2_chr8_-_110346614_110346722	0.118105	ACAGUAU	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr2_-_178128528_178128574	0.117587	ACAGUAU	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr2_+_71558858_71558936	0.117213	ACAGUAU	ENST00000437658.2|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000355812.3|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000377802.2|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000264447.4|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000409544.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000455226.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000454278.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000417778.1|ZNF638|ENSG00000075292.14|zinc finger protein 638 	ENST00000454122.1|ZNF638|ENSG00000075292.14|zinc finger protein 638
hg19_v2_chr1_-_95392635_95392834	0.116589	ACAGUAU	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr1_+_100435315_100435345	0.115678	ACAGUAU	ENST00000370155.3|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 	ENST00000465289.1|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
hg19_v2_chr11_-_27494279_27494308	0.115555	ACAGUAU	ENST00000379214.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr19_+_45973120_45973171	0.11527	ACAGUAU	ENST00000592811.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000586615.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr1_-_173991434_173991556	0.115169	ACAGUAU	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr6_-_130031358_130031378	0.114747	ACAGUAU	ENST00000368149.2|ARHGAP18|ENSG00000146376.6|Rho GTPase activating protein 18
hg19_v2_chr2_-_24149977_24150007	0.112484	ACAGUAU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chrX_-_131352152_131352204	0.111862	ACAGUAU	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr10_+_115674530_115674530	0.110737	ACAGUAU	ENST00000451472.1|AL162407.1|ENSG00000234631.1|CDNA FLJ20147 fis, clone COL07954; HCG1781466; Uncharacterized protein
hg19_v2_chr3_-_98620500_98620547	0.110668	ACAGUAU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr10_+_95256356_95256408	0.110335	ACAGUAU	ENST00000371485.3|CEP55|ENSG00000138180.11|centrosomal protein 55kDa
hg19_v2_chr5_+_86564739_86564791	0.110331	ACAGUAU	ENST00000456692.2|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000512763.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1 	ENST00000506290.1|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr1_+_78245303_78245351	0.10912	ACAGUAU	ENST00000370791.3|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A 	ENST00000443751.2|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A
hg19_v2_chr13_+_26828275_26828312	0.108974	ACAGUAU	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr4_-_80994210_80994284	0.10838	ACAGUAU	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr3_+_69812877_69812962	0.10724	ACAGUAU	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr15_-_56209306_56209344	0.107239	ACAGUAU	ENST00000506154.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000338963.2|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 	ENST00000508342.1|NEDD4|ENSG00000069869.11|neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
hg19_v2_chr2_-_65357225_65357267	0.106515	ACAGUAU	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr4_+_95679072_95679125	0.106184	ACAGUAU	ENST00000515059.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr14_-_53619816_53620056	0.105594	ACAGUAU	ENST00000323669.5|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000395606.1|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000357758.3|DDHD1|ENSG00000100523.10|DDHD domain containing 1
hg19_v2_chr12_+_27485823_27485868	0.105454	ACAGUAU	ENST00000395901.2|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2 	ENST00000546179.1|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2
hg19_v2_chr1_-_169455169_169455241	0.10498	ACAGUAU	ENST00000367804.4|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2 	ENST00000236137.5|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2
hg19_v2_chr3_-_176914238_176914277	0.102411	ACAGUAU	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr5_+_134181625_134181713	0.102356	ACAGUAU	ENST00000394976.3|C5orf24|ENSG00000181904.8|chromosome 5 open reading frame 24
hg19_v2_chr15_+_38544476_38544574	0.102345	ACAGUAU	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr2_-_183903133_183903210	0.102333	ACAGUAU	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr2_+_160568978_160569064	0.10193	ACAGUAU	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr3_+_15247686_15247784	0.101819	ACAGUAU	ENST00000253693.2|CAPN7|ENSG00000131375.5|calpain 7
hg19_v2_chr12_+_68042495_68042508	0.101783	ACAGUAU	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr12_-_111021110_111021142	0.101467	ACAGUAU	ENST00000354300.3|PPTC7|ENSG00000196850.4|PTC7 protein phosphatase homolog (S. cerevisiae)
hg19_v2_chr12_-_15942309_15942330	0.100616	ACAGUAU	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr2_+_120517174_120517207	0.10021	ACAGUAU	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr6_-_85474219_85474237	0.100197	ACAGUAU	ENST00000369663.5|TBX18|ENSG00000112837.12|T-box 18
hg19_v2_chr17_-_49337392_49337465	0.0999969	ACAGUAU	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr1_-_182573514_182573543	0.0997936	ACAGUAU	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr16_-_53737795_53737850	0.0991299	ACAGUAU	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr1_-_93645818_93645918	0.0971765	ACAGUAU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr15_-_55881135_55881192	0.0966825	ACAGUAU	ENST00000302000.6|PYGO1|ENSG00000171016.7|pygopus family PHD finger 1
hg19_v2_chr2_-_179343268_179343338	0.09624	ACAGUAU	ENST00000424785.2|FKBP7|ENSG00000079150.13|FK506 binding protein 7
hg19_v2_chr1_-_10003372_10003465	0.0953194	ACAGUAU	ENST00000377223.1|LZIC|ENSG00000162441.7|leucine zipper and CTNNBIP1 domain containing 	ENST00000541052.1|LZIC|ENSG00000162441.7|leucine zipper and CTNNBIP1 domain containing 	ENST00000377213.1|LZIC|ENSG00000162441.7|leucine zipper and CTNNBIP1 domain containing
hg19_v2_chr5_+_74632993_74633028	0.095194	ACAGUAU	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr11_+_107879459_107879702	0.0948436	ACAGUAU	ENST00000393094.2|CUL5|ENSG00000166266.9|cullin 5
hg19_v2_chr3_+_19988566_19988648	0.0947205	ACAGUAU	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr1_-_225615599_225615802	0.0932913	ACAGUAU	ENST00000421383.1|LBR|ENSG00000143815.10|lamin B receptor 	ENST00000272163.4|LBR|ENSG00000143815.10|lamin B receptor
hg19_v2_chr2_-_37193606_37193633	0.0925992	ACAGUAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chrX_-_122866874_122866911	0.0923894	ACAGUAU	ENST00000245838.8|THOC2|ENSG00000125676.15|THO complex 2 	ENST00000355725.4|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr8_-_74884511_74884546	0.0920627	ACAGUAU	ENST00000518127.1|TCEB1|ENSG00000154582.12|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
hg19_v2_chr5_+_135468516_135468621	0.0919813	ACAGUAU	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr12_+_88536067_88536100	0.0917272	ACAGUAU	ENST00000549011.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000266712.6|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000551088.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3
hg19_v2_chrX_+_40944871_40944888	0.0915471	ACAGUAU	ENST00000378308.2|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked 	ENST00000324545.8|USP9X|ENSG00000124486.8|ubiquitin specific peptidase 9, X-linked
hg19_v2_chr1_-_26232951_26232959	0.091377	ACAGUAU	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr4_-_125633876_125633897	0.0910714	ACAGUAU	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr3_-_136471204_136471249	0.0908997	ACAGUAU	ENST00000480733.1|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000383202.2|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000236698.5|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000434713.2|STAG1|ENSG00000118007.8|stromal antigen 1
hg19_v2_chr4_+_15004165_15004298	0.090607	ACAGUAU	ENST00000538197.1|CPEB2|ENSG00000137449.11|cytoplasmic polyadenylation element binding protein 2 	ENST00000541112.1|CPEB2|ENSG00000137449.11|cytoplasmic polyadenylation element binding protein 2 	ENST00000442003.2|CPEB2|ENSG00000137449.11|cytoplasmic polyadenylation element binding protein 2
hg19_v2_chr3_+_99357319_99357454	0.0900053	ACAGUAU	ENST00000452013.1|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000261037.3|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000273342.4|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1
hg19_v2_chr8_-_95961578_95961639	0.089791	ACAGUAU	ENST00000448464.2|TP53INP1|ENSG00000164938.9|tumor protein p53 inducible nuclear protein 1 	ENST00000342697.4|TP53INP1|ENSG00000164938.9|tumor protein p53 inducible nuclear protein 1
hg19_v2_chr6_+_150920999_150921062	0.0896386	ACAGUAU	ENST00000367328.1|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENST00000367326.1|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
hg19_v2_chr11_-_86666427_86666450	0.0889131	ACAGUAU	ENST00000531380.1|FZD4|ENSG00000174804.3|frizzled family receptor 4
hg19_v2_chr10_-_91403625_91403649	0.0881424	ACAGUAU	ENST00000322191.6|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000342512.3|PANK1|ENSG00000152782.12|pantothenate kinase 1 	ENST00000371774.2|PANK1|ENSG00000152782.12|pantothenate kinase 1
hg19_v2_chr2_+_16080659_16080686	0.0876711	ACAGUAU	ENST00000281043.3|MYCN|ENSG00000134323.10|v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
hg19_v2_chr6_+_71998506_71998522	0.0872829	ACAGUAU	ENST00000370435.4|OGFRL1|ENSG00000119900.7|opioid growth factor receptor-like 1
hg19_v2_chr4_+_106816592_106816608	0.0872624	ACAGUAU	ENST00000379987.2|NPNT|ENSG00000168743.8|nephronectin 	ENST00000453617.2|NPNT|ENSG00000168743.8|nephronectin 	ENST00000427316.2|NPNT|ENSG00000168743.8|nephronectin 	ENST00000514622.1|NPNT|ENSG00000168743.8|nephronectin 	ENST00000305572.8|NPNT|ENSG00000168743.8|nephronectin
hg19_v2_chr19_+_32836499_32836625	0.0871307	ACAGUAU	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr1_+_162467595_162467655	0.0871238	ACAGUAU	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chr20_+_37434329_37434371	0.0870504	ACAGUAU	ENST00000299824.1|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B 	ENST00000373331.2|PPP1R16B|ENSG00000101445.5|protein phosphatase 1, regulatory subunit 16B
hg19_v2_chr12_-_88974236_88974256	0.0860749	ACAGUAU	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr14_-_31495569_31495636	0.0858394	ACAGUAU	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr17_-_63052929_63052962	0.0854362	ACAGUAU	ENST00000439174.2|GNA13|ENSG00000120063.5|guanine nucleotide binding protein (G protein), alpha 13
hg19_v2_chr2_-_225450013_225450068	0.0852326	ACAGUAU	ENST00000264414.4|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr9_+_118916082_118916108	0.0850992	ACAGUAU	ENST00000328252.3|PAPPA|ENSG00000182752.8|pregnancy-associated plasma protein A, pappalysin 1
hg19_v2_chr2_+_135676381_135676435	0.0845263	ACAGUAU	ENST00000537343.1|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000295238.6|CCNT2|ENSG00000082258.8|cyclin T2 	ENST00000264157.5|CCNT2|ENSG00000082258.8|cyclin T2
hg19_v2_chr3_-_129407535_129407575	0.0845162	ACAGUAU	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr9_-_73029540_73029540	0.0839404	ACAGUAU	ENST00000377126.2|KLF9|ENSG00000119138.3|Kruppel-like factor 9
hg19_v2_chr17_+_54671047_54671075	0.0833674	ACAGUAU	ENST00000332822.4|NOG|ENSG00000183691.4|noggin
hg19_v2_chr9_+_129622904_129622956	0.0831722	ACAGUAU	ENST00000319119.4|ZBTB34|ENSG00000177125.5|zinc finger and BTB domain containing 34
hg19_v2_chr1_-_35395178_35395265	0.0828471	ACAGUAU	ENST00000373347.1|DLGAP3|ENSG00000116544.7|discs, large (Drosophila) homolog-associated protein 3
hg19_v2_chr10_+_17686124_17686192	0.0827377	ACAGUAU	ENST00000377524.3|STAM|ENSG00000136738.10|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
hg19_v2_chr9_+_2621798_2621834	0.0818158	ACAGUAU	ENST00000382100.3|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr14_-_52535712_52535753	0.0811643	ACAGUAU	ENST00000216286.5|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen) 	ENST00000541773.1|NID2|ENSG00000087303.12|nidogen 2 (osteonidogen)
hg19_v2_chr7_-_32931387_32931509	0.08095	ACAGUAU	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr8_+_126442563_126442624	0.0803732	ACAGUAU	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr8_-_66754172_66754201	0.0802298	ACAGUAU	ENST00000401827.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr5_-_168006591_168006638	0.0798556	ACAGUAU	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr4_+_144106080_144106144	0.079249	ACAGUAU	ENST00000307017.4|USP38|ENSG00000170185.5|ubiquitin specific peptidase 38
hg19_v2_chr3_+_37284668_37284771	0.079207	ACAGUAU	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr8_-_42698433_42698486	0.0787232	ACAGUAU	ENST00000345117.2|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1 	ENST00000254250.3|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1
hg19_v2_chr1_+_110091189_110091268	0.0782091	ACAGUAU	ENST00000369851.4|GNAI3|ENSG00000065135.7|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3
hg19_v2_chr6_+_121756809_121756838	0.0780895	ACAGUAU	ENST00000282561.3|GJA1|ENSG00000152661.7|gap junction protein, alpha 1, 43kDa
hg19_v2_chr14_-_35182994_35183034	0.0778702	ACAGUAU	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr5_+_112043186_112043225	0.0777956	ACAGUAU	ENST00000509732.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000457016.1|APC|ENSG00000134982.12|adenomatous polyposis coli 	ENST00000507379.1|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr7_-_135612198_135612198	0.0757982	ACAGUAU	ENST00000589735.1|LUZP6|ENSG00000267697.1|leucine zipper protein 6
hg19_v2_chr13_+_97874574_97874609	0.0756188	ACAGUAU	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr7_-_14029515_14029642	0.0753967	ACAGUAU	ENST00000430479.1|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000405218.2|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000343495.5|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr12_+_52203789_52203789	0.0739122	ACAGUAU	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr6_-_139695757_139695795	0.0728532	ACAGUAU	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr5_+_172483347_172483407	0.0717282	ACAGUAU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr13_-_77601282_77601308	0.0708554	ACAGUAU	ENST00000355619.5|FBXL3|ENSG00000005812.6|F-box and leucine-rich repeat protein 3
hg19_v2_chr19_+_51152702_51152702	0.0707214	ACAGUAU	ENST00000425202.1|C19orf81|ENSG00000235034.2|chromosome 19 open reading frame 81
hg19_v2_chr1_+_200708671_200708744	0.0704934	ACAGUAU	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr1_-_47697387_47697457	0.069614	ACAGUAU	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chr13_+_113622810_113622830	0.0688038	ACAGUAU	ENST00000397030.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr14_-_82000140_82000229	0.0686629	ACAGUAU	ENST00000555824.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000557372.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000336735.4|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans)
hg19_v2_chr20_+_32951041_32951067	0.0685239	ACAGUAU	ENST00000374864.4|ITCH|ENSG00000078747.8|itchy E3 ubiquitin protein ligase
hg19_v2_chr15_+_77223960_77223994	0.0677824	ACAGUAU	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr5_-_171433819_171433911	0.0677064	ACAGUAU	ENST00000296933.6|FBXW11|ENSG00000072803.13|F-box and WD repeat domain containing 11
hg19_v2_chr14_+_57857262_57857334	0.0674229	ACAGUAU	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr4_+_26585538_26585680	0.0673688	ACAGUAU	ENST00000264866.4|TBC1D19|ENSG00000109680.6|TBC1 domain family, member 19
hg19_v2_chr3_-_138553594_138553684	0.0664214	ACAGUAU	ENST00000477593.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 	ENST00000483968.1|PIK3CB|ENSG00000051382.4|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta
hg19_v2_chr2_-_164592497_164592573	0.0657416	ACAGUAU	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr1_-_243418344_243418356	0.0653349	ACAGUAU	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr5_+_82767284_82767310	0.0648578	ACAGUAU	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr8_-_23712312_23712328	0.0647796	ACAGUAU	ENST00000290271.2|STC1|ENSG00000159167.7|stanniocalcin 1
hg19_v2_chr2_+_170683942_170683972	0.0639081	ACAGUAU	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr1_+_112162381_112162431	0.0637328	ACAGUAU	ENST00000433097.1|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000369709.3|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000436150.2|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family
hg19_v2_chrX_+_51486481_51486549	0.0634977	ACAGUAU	ENST00000340438.4|GSPT2|ENSG00000189369.7|G1 to S phase transition 2
hg19_v2_chr10_+_96162242_96162283	0.0627467	ACAGUAU	ENST00000225235.4|TBC1D12|ENSG00000108239.8|TBC1 domain family, member 12
hg19_v2_chr8_-_125384927_125384952	0.0617613	ACAGUAU	ENST00000297632.6|TMEM65|ENSG00000164983.6|transmembrane protein 65
hg19_v2_chr14_+_73525144_73525224	0.0608333	ACAGUAU	ENST00000261973.7|RBM25|ENSG00000119707.9|RNA binding motif protein 25 	ENST00000540173.1|RBM25|ENSG00000119707.9|RNA binding motif protein 25
hg19_v2_chr5_-_132073210_132073330	0.0608284	ACAGUAU	ENST00000378735.1|KIF3A|ENSG00000131437.11|kinesin family member 3A 	ENST00000378746.4|KIF3A|ENSG00000131437.11|kinesin family member 3A
hg19_v2_chr17_+_11144580_11144740	0.0606249	ACAGUAU	ENST00000441885.3|SHISA6|ENSG00000188803.10|shisa family member 6 	ENST00000432116.3|SHISA6|ENSG00000188803.10|shisa family member 6 	ENST00000409168.3|SHISA6|ENSG00000188803.10|shisa family member 6
hg19_v2_chr15_-_77363513_77363570	0.0602231	ACAGUAU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr14_-_81687197_81687280	0.0597321	ACAGUAU	ENST00000553612.1|GTF2A1|ENSG00000165417.7|general transcription factor IIA, 1, 19/37kDa
hg19_v2_chr2_-_201936302_201936416	0.057978	ACAGUAU	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr7_+_65338230_65338293	0.0577947	ACAGUAU	ENST00000360768.3|VKORC1L1|ENSG00000196715.5|vitamin K epoxide reductase complex, subunit 1-like 1
hg19_v2_chr14_+_23790655_23790680	0.0577361	ACAGUAU	ENST00000397276.2|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chrX_-_100604184_100604184	0.0576489	ACAGUAU	ENST00000372902.3|TIMM8A|ENSG00000126953.5|translocase of inner mitochondrial membrane 8 homolog A (yeast)
hg19_v2_chr5_+_139175380_139175431	0.0576363	ACAGUAU	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr18_-_53255766_53255860	0.0568308	ACAGUAU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr4_-_139163491_139163510	0.056602	ACAGUAU	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr6_-_111804393_111804436	0.0563284	ACAGUAU	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr13_+_49550015_49550070	0.056256	ACAGUAU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr18_+_57567180_57567248	0.0559416	ACAGUAU	ENST00000316660.6|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1 	ENST00000269518.9|PMAIP1|ENSG00000141682.11|phorbol-12-myristate-13-acetate-induced protein 1
hg19_v2_chr2_+_208394616_208394655	0.0555105	ACAGUAU	ENST00000432329.2|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000353267.3|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1 	ENST00000445803.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr1_-_235491462_235491534	0.0553684	ACAGUAU	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr6_-_13711773_13711796	0.0553058	ACAGUAU	ENST00000011619.3|RANBP9|ENSG00000010017.9|RAN binding protein 9
hg19_v2_chr10_-_115904361_115904375	0.0547651	ACAGUAU	ENST00000428953.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118 	ENST00000543782.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118
hg19_v2_chr16_-_47177874_47177922	0.0536967	ACAGUAU	ENST00000562435.1|NETO2|ENSG00000171208.5|neuropilin (NRP) and tolloid (TLL)-like 2
hg19_v2_chr7_+_29234028_29234043	0.0533935	ACAGUAU	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr14_+_75745477_75745680	0.0530818	ACAGUAU	ENST00000303562.4|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554617.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000554212.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000535987.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog 	ENST00000555242.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr7_+_104654623_104654669	0.0529625	ACAGUAU	ENST00000311117.3|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334877.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000257745.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334914.7|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000478990.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000495267.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000476671.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E
hg19_v2_chr17_+_16593539_16593639	0.05273	ACAGUAU	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr3_+_150321068_150321123	0.0523335	ACAGUAU	ENST00000471696.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000477889.1|SELT|ENSG00000198843.8|Selenoprotein T  	ENST00000485923.1|SELT|ENSG00000198843.8|Selenoprotein T
hg19_v2_chr1_-_47779762_47779827	0.0522792	ACAGUAU	ENST00000371877.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000360380.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000337817.5|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000447475.2|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus
hg19_v2_chr14_-_21737610_21737653	0.0522735	ACAGUAU	ENST00000320084.7|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000449098.1|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2) 	ENST00000336053.6|HNRNPC|ENSG00000092199.13|heterogeneous nuclear ribonucleoprotein C (C1/C2)
hg19_v2_chr11_-_18765389_18765499	0.052239	ACAGUAU	ENST00000477854.1|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
hg19_v2_chr11_-_94964354_94964374	0.0519907	ACAGUAU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr1_+_82266053_82266082	0.0519344	ACAGUAU	ENST00000370715.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370713.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000319517.6|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370717.2|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000394879.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000271029.4|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000335786.5|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr12_+_62860581_62860629	0.0519177	ACAGUAU	ENST00000393632.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393630.3|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000280379.6|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000546600.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552738.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000393629.2|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae) 	ENST00000552115.1|MON2|ENSG00000061987.10|MON2 homolog (S. cerevisiae)
hg19_v2_chr16_-_23160591_23160787	0.0515232	ACAGUAU	ENST00000219689.7|USP31|ENSG00000103404.10|ubiquitin specific peptidase 31
hg19_v2_chr2_+_45878790_45878913	0.0513169	ACAGUAU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr16_-_62070305_62070310	0.0508259	ACAGUAU	ENST00000584337.1|CDH8|ENSG00000150394.9|cadherin 8, type 2
hg19_v2_chr7_-_93633684_93633695	0.0502811	ACAGUAU	ENST00000222547.3|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein 	ENST00000425626.1|BET1|ENSG00000105829.7|Bet1 golgi vesicular membrane trafficking protein
hg19_v2_chr6_+_13615554_13615601	0.0496784	ACAGUAU	ENST00000451315.2|NOL7|ENSG00000225921.2|nucleolar protein 7, 27kDa
hg19_v2_chr20_+_35201857_35201891	0.0496608	ACAGUAU	ENST00000373874.2|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr18_+_60190226_60190314	0.0492227	ACAGUAU	ENST00000269499.5|ZCCHC2|ENSG00000141664.5|zinc finger, CCHC domain containing 2
hg19_v2_chr4_-_53525406_53525502	0.0485161	ACAGUAU	ENST00000451218.2|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46 	ENST00000441222.3|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr7_-_102985035_102985277	0.0483281	ACAGUAU	ENST00000426036.2|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000249270.7|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000454277.1|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENST00000412522.1|DNAJC2|ENSG00000105821.10|DnaJ (Hsp40) homolog, subfamily C, member 2
hg19_v2_chr3_+_141106643_141106681	0.0476893	ACAGUAU	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr3_+_130569429_130569479	0.0470722	ACAGUAU	ENST00000505330.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000504381.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000507488.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000393221.4|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr4_+_38665810_38665827	0.0468102	ACAGUAU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr17_+_2496971_2497040	0.0465839	ACAGUAU	ENST00000397195.5|PAFAH1B1|ENSG00000007168.8|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
hg19_v2_chr7_+_77469439_77469497	0.0452522	ACAGUAU	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr9_+_4490394_4490446	0.0434281	ACAGUAU	ENST00000262352.3|SLC1A1|ENSG00000106688.7|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
hg19_v2_chr12_+_14518598_14518663	0.0424862	ACAGUAU	ENST00000261168.4|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000538511.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000545723.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000543189.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein 	ENST00000536444.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr10_+_25463951_25463991	0.0423105	ACAGUAU	ENST00000376351.3|GPR158|ENSG00000151025.9|G protein-coupled receptor 158
hg19_v2_chr3_+_8775466_8775552	0.0410515	ACAGUAU	ENST00000343849.2|CAV3|ENSG00000182533.6|caveolin 3 	ENST00000397368.2|CAV3|ENSG00000182533.6|caveolin 3
hg19_v2_chr21_-_46238034_46238051	0.0407562	ACAGUAU	ENST00000332859.6|SUMO3|ENSG00000184900.11|small ubiquitin-like modifier 3
hg19_v2_chr2_-_161056802_161056815	0.0406754	ACAGUAU	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr4_-_36246060_36246167	0.0406078	ACAGUAU	ENST00000303965.4|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr12_+_69864129_69864222	0.0405566	ACAGUAU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chrX_-_19988382_19988416	0.0393934	ACAGUAU	ENST00000356980.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379687.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379682.4|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23
hg19_v2_chr7_+_138145076_138145116	0.0385006	ACAGUAU	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr10_-_27529716_27529756	0.0383408	ACAGUAU	ENST00000375897.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000396271.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr3_-_99833333_99833357	0.0378562	ACAGUAU	ENST00000354552.3|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000331335.5|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like 	ENST00000398326.2|FILIP1L|ENSG00000168386.14|filamin A interacting protein 1-like
hg19_v2_chr4_-_99579733_99579789	0.0376635	ACAGUAU	ENST00000305798.3|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chrX_+_146993449_146993498	0.0375426	ACAGUAU	ENST00000218200.8|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370471.3|FMR1|ENSG00000102081.9|fragile X mental retardation 1 	ENST00000370477.1|FMR1|ENSG00000102081.9|fragile X mental retardation 1
hg19_v2_chr8_-_67525473_67525518	0.0372911	ACAGUAU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr12_-_76425368_76425384	0.0368885	ACAGUAU	ENST00000602540.1|PHLDA1|ENSG00000139289.9|pleckstrin homology-like domain, family A, member 1
hg19_v2_chr8_-_41166953_41167016	0.0367464	ACAGUAU	ENST00000220772.3|SFRP1|ENSG00000104332.7|secreted frizzled-related protein 1
hg19_v2_chr3_-_171178157_171178225	0.0363815	ACAGUAU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr4_+_55524085_55524110	0.0362357	ACAGUAU	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr2_-_182545603_182545603	0.0361988	ACAGUAU	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr15_+_49715293_49715448	0.0353623	ACAGUAU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr8_+_79578282_79578334	0.0349399	ACAGUAU	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr2_-_216300784_216300895	0.0346625	ACAGUAU	ENST00000421182.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000432072.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000323926.6|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000336916.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357867.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000359671.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000346544.3|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000345488.5|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357009.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000446046.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000356005.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000443816.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000426059.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000354785.4|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr3_-_15901278_15901354	0.0344748	ACAGUAU	ENST00000399451.2|ANKRD28|ENSG00000206560.6|ankyrin repeat domain 28
hg19_v2_chr5_-_40798263_40798300	0.0344598	ACAGUAU	ENST00000296800.4|PRKAA1|ENSG00000132356.7|protein kinase, AMP-activated, alpha 1 catalytic subunit 	ENST00000397128.2|PRKAA1|ENSG00000132356.7|protein kinase, AMP-activated, alpha 1 catalytic subunit
hg19_v2_chr6_+_17281573_17281605	0.0344067	ACAGUAU	ENST00000379052.5|RBM24|ENSG00000112183.10|RNA binding motif protein 24
hg19_v2_chr2_-_114036488_114036527	0.0332678	ACAGUAU	ENST00000263335.7|PAX8|ENSG00000125618.12|paired box 8 	ENST00000397647.3|PAX8|ENSG00000125618.12|paired box 8 	ENST00000348715.5|PAX8|ENSG00000125618.12|paired box 8 	ENST00000429538.3|PAX8|ENSG00000125618.12|paired box 8
hg19_v2_chr1_+_203764742_203764834	0.0332196	ACAGUAU	ENST00000432282.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000453771.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367214.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367212.3|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000332127.4|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A
hg19_v2_chr2_+_14772810_14772853	0.0325209	ACAGUAU	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr1_-_242687676_242687820	0.031143	ACAGUAU	ENST00000536534.2|PLD5|ENSG00000180287.12|phospholipase D family, member 5
hg19_v2_chr3_+_25469724_25469773	0.0311248	ACAGUAU	ENST00000437042.2|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr3_+_105085734_105085760	0.0307302	ACAGUAU	ENST00000306107.5|ALCAM|ENSG00000170017.8|activated leukocyte cell adhesion molecule
hg19_v2_chr2_-_235405679_235405739	0.030237	ACAGUAU	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr10_-_48438974_48439023	0.0298092	ACAGUAU	ENST00000224605.2|GDF10|ENSG00000107623.4|growth differentiation factor 10
hg19_v2_chr11_+_9685604_9685706	0.0297099	ACAGUAU	ENST00000447399.2|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit 	ENST00000318950.6|SWAP70|ENSG00000133789.10|SWAP switching B-cell complex 70kDa subunit
hg19_v2_chr18_-_23670546_23670605	0.0293413	ACAGUAU	ENST00000542743.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000545952.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000539849.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000415083.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr6_+_163835669_163835693	0.0292184	ACAGUAU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr17_+_30677136_30677205	0.0289547	ACAGUAU	ENST00000394670.4|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000321233.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394673.2|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000341711.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000579634.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000580759.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000342555.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000577908.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394679.5|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000582165.1|ZNF207|ENSG00000010244.12|zinc finger protein 207
hg19_v2_chr9_+_78505581_78505621	0.0283656	ACAGUAU	ENST00000376767.3|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5 	ENST00000376752.4|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5
hg19_v2_chr8_+_133787586_133787673	0.0277822	ACAGUAU	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr6_-_56707943_56708013	0.0276805	ACAGUAU	ENST00000370769.4|DST|ENSG00000151914.13|dystonin 	ENST00000421834.2|DST|ENSG00000151914.13|dystonin 	ENST00000312431.6|DST|ENSG00000151914.13|dystonin 	ENST00000361203.3|DST|ENSG00000151914.13|dystonin 	ENST00000523817.1|DST|ENSG00000151914.13|dystonin
hg19_v2_chr12_+_93965451_93965494	0.0274316	ACAGUAU	ENST00000548537.1|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr1_-_24306798_24306828	0.0273058	ACAGUAU	ENST00000374452.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000492112.2|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000343255.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000344989.6|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10
hg19_v2_chrX_+_118708493_118708506	0.0270654	ACAGUAU	ENST00000371558.2|UBE2A|ENSG00000077721.11|ubiquitin-conjugating enzyme E2A
hg19_v2_chr2_+_128848881_128848908	0.0258917	ACAGUAU	ENST00000259253.6|UGGT1|ENSG00000136731.8|UDP-glucose glycoprotein glucosyltransferase 1
hg19_v2_chr6_-_111136513_111136525	0.0255374	ACAGUAU	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr6_-_100912785_100912822	0.0249532	ACAGUAU	ENST00000369208.3|SIM1|ENSG00000112246.5|single-minded family bHLH transcription factor 1
hg19_v2_chr17_+_1733276_1733321	0.0243193	ACAGUAU	ENST00000254719.5|RPA1|ENSG00000132383.7|replication protein A1, 70kDa
hg19_v2_chr9_-_16870704_16870841	0.0235944	ACAGUAU	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr4_+_41362796_41362841	0.022726	ACAGUAU	ENST00000508501.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512946.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000313860.7|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512632.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000512820.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr3_-_52713729_52713784	0.022618	ACAGUAU	ENST00000296302.7|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000356770.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000337303.4|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409057.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000410007.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409114.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000409767.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000423351.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr6_+_167412665_167412698	0.0224669	ACAGUAU	ENST00000366847.4|FGFR1OP|ENSG00000213066.7|FGFR1 oncogene partner
hg19_v2_chr1_-_47184723_47184736	0.0213358	ACAGUAU	ENST00000371933.3|EFCAB14|ENSG00000159658.6|EF-hand calcium binding domain 14
hg19_v2_chr1_+_179262905_179262986	0.0208422	ACAGUAU	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr2_+_113033164_113033219	0.0205092	ACAGUAU	ENST00000409871.1|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6 	ENST00000343936.4|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6
hg19_v2_chr9_+_112810878_112810985	0.0204694	ACAGUAU	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr8_-_42065187_42065242	0.019631	ACAGUAU	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chrX_+_72223352_72223449	0.0193498	ACAGUAU	ENST00000373521.2|PABPC1L2B|ENSG00000184388.4|poly(A) binding protein, cytoplasmic 1-like 2B 	ENST00000538388.1|PABPC1L2B|ENSG00000184388.4|poly(A) binding protein, cytoplasmic 1-like 2B
hg19_v2_chr7_+_73442102_73442139	0.0193061	ACAGUAU	ENST00000445912.1|ELN|ENSG00000049540.12|elastin 	ENST00000252034.7|ELN|ENSG00000049540.12|elastin
hg19_v2_chr1_+_193091080_193091222	0.0191994	ACAGUAU	ENST00000367435.3|CDC73|ENSG00000134371.9|cell division cycle 73
hg19_v2_chr9_-_98279241_98279339	0.0190253	ACAGUAU	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr16_-_17564738_17564834	0.0188924	ACAGUAU	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr9_-_123476719_123476810	0.0188113	ACAGUAU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr10_-_62149433_62149488	0.0183472	ACAGUAU	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr6_+_89790490_89790506	0.0166641	ACAGUAU	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr11_+_129939779_129939801	0.0163178	ACAGUAU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr14_-_99947168_99947232	0.0162773	ACAGUAU	ENST00000331768.5|SETD3|ENSG00000183576.8|SET domain containing 3
hg19_v2_chr18_-_12657988_12658133	0.0158627	ACAGUAU	ENST00000410092.3|SPIRE1|ENSG00000134278.10|spire-type actin nucleation factor 1 	ENST00000409402.4|SPIRE1|ENSG00000134278.10|spire-type actin nucleation factor 1
hg19_v2_chr18_-_9614515_9614583	0.0155178	ACAGUAU	ENST00000400556.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1 	ENST00000400555.3|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr7_+_21467642_21467671	0.0150061	ACAGUAU	ENST00000222584.3|SP4|ENSG00000105866.9|Sp4 transcription factor 	ENST00000432066.2|SP4|ENSG00000105866.9|Sp4 transcription factor
hg19_v2_chr18_+_67068228_67068291	0.0145872	ACAGUAU	ENST00000382713.5|DOK6|ENSG00000206052.6|docking protein 6
hg19_v2_chrX_-_154493791_154493874	0.0145156	ACAGUAU	ENST00000369454.3|RAB39B|ENSG00000155961.4|RAB39B, member RAS oncogene family
hg19_v2_chr4_+_56815102_56815147	0.014141	ACAGUAU	ENST00000257287.4|CEP135|ENSG00000174799.6|centrosomal protein 135kDa
hg19_v2_chr17_+_57232690_57232860	0.01386	ACAGUAU	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr7_-_44924939_44924993	0.0135913	ACAGUAU	ENST00000395699.2|PURB|ENSG00000146676.5|purine-rich element binding protein B
hg19_v2_chr6_-_82462425_82462491	0.0133447	ACAGUAU	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr7_+_107384142_107384173	0.0132243	ACAGUAU	ENST00000440859.3|CBLL1|ENSG00000105879.7|Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
hg19_v2_chr17_+_14204389_14204416	0.013026	ACAGUAU	ENST00000360954.2|HS3ST3B1|ENSG00000125430.4|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
hg19_v2_chr1_-_226374373_226374464	0.0129635	ACAGUAU	ENST00000366812.5|ACBD3|ENSG00000182827.8|acyl-CoA binding domain containing 3
hg19_v2_chr9_-_101471479_101471522	0.0117403	ACAGUAU	ENST00000259455.2|GABBR2|ENSG00000136928.4|gamma-aminobutyric acid (GABA) B receptor, 2
hg19_v2_chr8_+_41348072_41348112	0.011547	ACAGUAU	ENST00000405786.2|GOLGA7|ENSG00000147533.12|golgin A7
hg19_v2_chr10_-_46167722_46167926	0.0115216	ACAGUAU	ENST00000374366.3|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000344646.5|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chr6_-_132834184_132834337	0.0115171	ACAGUAU	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr6_-_79944336_79944440	0.0114223	ACAGUAU	ENST00000344726.5|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3 	ENST00000275036.7|HMGN3|ENSG00000118418.10|high mobility group nucleosomal binding domain 3
hg19_v2_chr6_+_116421976_116422054	0.0110259	ACAGUAU	ENST00000319550.4|NT5DC1|ENSG00000178425.9|5'-nucleotidase domain containing 1 	ENST00000419791.1|NT5DC1|ENSG00000178425.9|5'-nucleotidase domain containing 1
hg19_v2_chr9_+_112542572_112542590	0.0108501	ACAGUAU	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr5_-_79287060_79287093	0.0107198	ACAGUAU	ENST00000512560.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000509852.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000512528.1|MTX3|ENSG00000177034.10|metaxin 3
hg19_v2_chr16_-_12009735_12009793	0.00911175	ACAGUAU	ENST00000439887.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1 	ENST00000434724.2|GSPT1|ENSG00000103342.8|G1 to S phase transition 1
hg19_v2_chr18_-_61089665_61089733	0.00879948	ACAGUAU	ENST00000238497.5|VPS4B|ENSG00000119541.5|vacuolar protein sorting 4 homolog B (S. cerevisiae)
hg19_v2_chr9_-_36400213_36400296	0.00836302	ACAGUAU	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr18_+_59000815_59000828	0.0082526	ACAGUAU	ENST00000262717.4|CDH20|ENSG00000101542.5|cadherin 20, type 2
hg19_v2_chr11_+_69924397_69924449	0.00774441	ACAGUAU	ENST00000355303.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr3_-_81811312_81811312	0.00764259	ACAGUAU	ENST00000429644.2|GBE1|ENSG00000114480.8|glucan (1,4-alpha-), branching enzyme 1
hg19_v2_chr6_-_94129244_94129284	0.00762306	ACAGUAU	ENST00000369303.4|EPHA7|ENSG00000135333.9|EPH receptor A7 	ENST00000369297.1|EPHA7|ENSG00000135333.9|EPH receptor A7
hg19_v2_chr12_-_21927736_21927768	0.00743842	ACAGUAU	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr8_+_67579807_67579887	0.00738384	ACAGUAU	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr1_-_225840747_225840860	0.00731082	ACAGUAU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr11_+_33278811_33279133	0.00720267	ACAGUAU	ENST00000303296.4|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3 	ENST00000379016.3|HIPK3|ENSG00000110422.7|homeodomain interacting protein kinase 3
hg19_v2_chr3_-_56835967_56835995	0.00720192	ACAGUAU	ENST00000495373.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3 	ENST00000296315.3|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr5_-_32313019_32313081	0.00672096	ACAGUAU	ENST00000280285.5|MTMR12|ENSG00000150712.6|myotubularin related protein 12 	ENST00000264934.5|MTMR12|ENSG00000150712.6|myotubularin related protein 12
hg19_v2_chr7_-_75988321_75988348	0.00654759	ACAGUAU	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr8_-_81083731_81083813	0.00624878	ACAGUAU	ENST00000379096.5|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr1_+_63063152_63063163	0.00604111	ACAGUAU	ENST00000371129.3|ANGPTL3|ENSG00000132855.4|angiopoietin-like 3
hg19_v2_chr12_+_19592602_19592648	0.005862	ACAGUAU	ENST00000398864.3|AEBP2|ENSG00000139154.10|AE binding protein 2 	ENST00000266508.9|AEBP2|ENSG00000139154.10|AE binding protein 2
hg19_v2_chrX_-_51239425_51239453	0.0058404	ACAGUAU	ENST00000375992.3|NUDT11|ENSG00000196368.4|nudix (nucleoside diphosphate linked moiety X)-type motif 11
hg19_v2_chr1_+_155829286_155829340	0.00579934	ACAGUAU	ENST00000368324.4|SYT11|ENSG00000132718.7|synaptotagmin XI
hg19_v2_chr4_-_153457197_153457268	0.00532981	ACAGUAU	ENST00000281708.4|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr6_+_53659746_53659817	0.00486006	ACAGUAU	ENST00000370888.1|LRRC1|ENSG00000137269.10|leucine rich repeat containing 1
hg19_v2_chr20_-_48770174_48770243	0.00483498	ACAGUAU	ENST00000341698.2|TMEM189-UBE2V1|ENSG00000124208.16|TMEM189-UBE2V1 readthrough
hg19_v2_chr1_-_155532484_155532605	0.00422894	ACAGUAU	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr12_+_56401268_56401443	0.0038008	ACAGUAU	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr1_+_37940153_37940190	0.00290303	ACAGUAU	ENST00000373087.6|ZC3H12A|ENSG00000163874.8|zinc finger CCCH-type containing 12A
hg19_v2_chr9_+_128509624_128509658	0.00257559	ACAGUAU	ENST00000342287.5|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3 	ENST00000373487.4|PBX3|ENSG00000167081.12|pre-B-cell leukemia homeobox 3
hg19_v2_chr10_+_115614370_115614436	0.00252686	ACAGUAU	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr1_+_183605200_183605220	0.00213963	ACAGUAU	ENST00000304685.4|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr14_-_101036119_101036131	0.00198275	ACAGUAU	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr12_-_51477333_51477426	0.0015029	ACAGUAU	ENST00000228515.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548206.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000546935.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2 	ENST00000548981.1|CSRNP2|ENSG00000110925.2|cysteine-serine-rich nuclear protein 2
hg19_v2_chr5_+_85913721_85913790	0.00140039	ACAGUAU	ENST00000247655.3|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000509578.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc 	ENST00000515763.1|COX7C|ENSG00000127184.6|cytochrome c oxidase subunit VIIc
hg19_v2_chr6_-_24721054_24721074	0.00127362	ACAGUAU	ENST00000378119.4|C6orf62|ENSG00000112308.8|chromosome 6 open reading frame 62
hg19_v2_chr8_-_38239732_38239796	0.00116701	ACAGUAU	ENST00000534155.1|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000433384.2|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000317025.8|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000316985.3|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1
hg19_v2_chr10_+_93683519_93683594	0.00109889	ACAGUAU	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr4_+_146402925_146402957	0.000893073	ACAGUAU	ENST00000302085.4|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr4_+_183164574_183164586	0.0004379	ACAGUAU	ENST00000511685.1|TENM3|ENSG00000218336.3|teneurin transmembrane protein 3
hg19_v2_chr1_+_116184566_116184633	0.000216674	ACAGUAU	ENST00000355485.2|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1 	ENST00000369510.4|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1
