A549 cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
| Motif name | Z-value | Associated genes | Profile | Logo |
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| IRF2_STAT2_IRF8_IRF1 | 10.00 |
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| IRF9 | 7.23 |
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| IRF6_IRF4_IRF5 | 6.08 |
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| PLAGL1 | 4.66 |
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| IRF3 | 4.12 |
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| PATZ1_KLF4 | 3.92 |
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| PITX1 | 3.32 |
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| BARHL1 | 3.28 |
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| RCOR1_MTA3 | 3.05 |
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| MECP2 | 2.97 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
| Sample name | Condition | Replicate/Batch |
|---|---|---|
| CoV002-CoV2-1-indexG4_S4 | ||
| CoV002-CoV2-2-indexG5_S5 | ||
| CoV002-CoV2-3-indexG6_S6 | ||
| CoV002-mock1-indexG1_S1 | ||
| CoV002-mock2-indexG2_S2 | ||
| CoV002-mock3-indexG3_S3 |