hg19_v2_chr5_+_42756903_42756963	0.0432534	UGACCUA	ENST00000361970.5|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152 	ENST00000388827.4|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152
hg19_v2_chr3_-_114790179_114790222	0.0308032	UGACCUA	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr1_+_150122034_150122170	0.0268352	UGACCUA	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr1_-_9970227_9970356	0.0265241	UGACCUA	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr17_-_33448468_33448513	0.0231323	UGACCUA	ENST00000591723.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein  	ENST00000587405.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000593039.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein
hg19_v2_chr1_+_151043070_151043110	0.020883	UGACCUA	ENST00000368918.3|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2 	ENST00000368917.1|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2
hg19_v2_chr1_+_101702417_101702481	0.017995	UGACCUA	ENST00000305352.6|S1PR1|ENSG00000170989.8|sphingosine-1-phosphate receptor 1
hg19_v2_chr6_+_146864829_146864881	0.0172029	UGACCUA	ENST00000367495.3|RAB32|ENSG00000118508.4|RAB32, member RAS oncogene family
hg19_v2_chr3_+_11314099_11314122	0.0164675	UGACCUA	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr20_-_36156125_36156250	0.0163105	UGACCUA	ENST00000397135.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000397137.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr1_+_233749739_233749761	0.016094	UGACCUA	ENST00000366621.3|KCNK1|ENSG00000135750.10|potassium channel, subfamily K, member 1
hg19_v2_chr2_+_182850551_182850607	0.0148164	UGACCUA	ENST00000452904.1|PPP1R1C|ENSG00000150722.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENST00000409137.3|PPP1R1C|ENSG00000150722.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENST00000280295.3|PPP1R1C|ENSG00000150722.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
hg19_v2_chr8_-_89339705_89339721	0.0124933	UGACCUA	ENST00000286614.6|MMP16|ENSG00000156103.11|matrix metallopeptidase 16 (membrane-inserted)
hg19_v2_chr14_+_100705322_100705360	0.0115238	UGACCUA	ENST00000262238.4|YY1|ENSG00000100811.6|YY1 transcription factor
hg19_v2_chr12_+_56137064_56137183	0.0114105	UGACCUA	ENST00000257868.5|GDF11|ENSG00000135414.5|growth differentiation factor 11 	ENST00000546799.1|GDF11|ENSG00000135414.5|growth differentiation factor 11
hg19_v2_chr5_+_95187934_95187939	0.0112373	UGACCUA	ENST00000357880.3|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27 	ENST00000436592.1|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27
hg19_v2_chr15_+_75940218_75940298	0.010603	UGACCUA	ENST00000308527.5|SNX33|ENSG00000173548.8|sorting nexin 33
hg19_v2_chr8_-_93115445_93115462	0.0105799	UGACCUA	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr16_+_67596310_67596353	0.0102329	UGACCUA	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr22_-_50746027_50746082	0.0102152	UGACCUA	ENST00000425954.1|PLXNB2|ENSG00000196576.10|plexin B2 	ENST00000449103.1|PLXNB2|ENSG00000196576.10|plexin B2
hg19_v2_chr10_-_79686284_79686527	0.0101112	UGACCUA	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chr1_+_181057638_181057692	0.00921486	UGACCUA	ENST00000367577.4|IER5|ENSG00000162783.8|immediate early response 5
hg19_v2_chr3_-_32022733_32022809	0.00915338	UGACCUA	ENST00000438237.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10 	ENST00000396556.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10
hg19_v2_chr10_+_52751010_52751118	0.00865902	UGACCUA	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr1_+_179262905_179262986	0.00852791	UGACCUA	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr1_+_28995231_28995250	0.00836313	UGACCUA	ENST00000373816.1|GMEB1|ENSG00000162419.8|glucocorticoid modulatory element binding protein 1
hg19_v2_chr9_+_137533615_137533660	0.00826075	UGACCUA	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr9_-_127533519_127533576	0.00789154	UGACCUA	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr3_-_9291063_9291136	0.00755998	UGACCUA	ENST00000383836.3|SRGAP3|ENSG00000196220.11|SLIT-ROBO Rho GTPase activating protein 3
hg19_v2_chr15_-_34394119_34394149	0.00733379	UGACCUA	ENST00000256545.4|EMC7|ENSG00000134153.5|ER membrane protein complex subunit 7
hg19_v2_chrX_+_119737806_119737835	0.00698344	UGACCUA	ENST00000371317.5|MCTS1|ENSG00000232119.3|malignant T cell amplified sequence 1
hg19_v2_chr10_+_70661014_70661090	0.0068002	UGACCUA	ENST00000373585.3|DDX50|ENSG00000107625.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
hg19_v2_chr2_+_109204909_109204928	0.00671478	UGACCUA	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr8_+_61591337_61591393	0.00650648	UGACCUA	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr11_+_118754475_118754552	0.00644577	UGACCUA	ENST00000292174.4|CXCR5|ENSG00000160683.4|chemokine (C-X-C motif) receptor 5
hg19_v2_chr21_-_36260980_36261011	0.0063339	UGACCUA	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr1_+_10271674_10271674	0.00631273	UGACCUA	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr19_+_30863271_30863338	0.00628867	UGACCUA	ENST00000355537.3|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr3_-_160283348_160283376	0.00628084	UGACCUA	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr6_+_123317116_123317260	0.00608209	UGACCUA	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chrX_+_23352133_23352229	0.00591282	UGACCUA	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr18_+_54318616_54318640	0.00590977	UGACCUA	ENST00000254442.3|WDR7|ENSG00000091157.9|WD repeat domain 7
hg19_v2_chr9_-_35665165_35665284	0.00504187	UGACCUA	ENST00000343259.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39 	ENST00000378387.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39
hg19_v2_chr5_-_140998616_140998639	0.00498655	UGACCUA	ENST00000389054.3|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000398562.2|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000389057.5|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000398566.3|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000398557.4|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1 	ENST00000253811.6|DIAPH1|ENSG00000131504.11|diaphanous-related formin 1
hg19_v2_chr15_-_65670360_65670378	0.00428039	UGACCUA	ENST00000327987.4|IGDCC3|ENSG00000174498.9|immunoglobulin superfamily, DCC subclass, member 3
hg19_v2_chr15_+_89631381_89631391	0.00385809	UGACCUA	ENST00000352732.5|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chrX_-_24045303_24045303	0.00363362	UGACCUA	ENST00000328046.8|KLHL15|ENSG00000174010.9|kelch-like family member 15
hg19_v2_chr7_+_97736197_97736211	0.00347041	UGACCUA	ENST00000297293.5|LMTK2|ENSG00000164715.5|lemur tyrosine kinase 2
hg19_v2_chr17_+_39845134_39845145	0.00345992	UGACCUA	ENST00000591776.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1 	ENST00000469257.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1
hg19_v2_chr1_+_113615794_113615884	0.00326429	UGACCUA	ENST00000361127.5|LRIG2|ENSG00000198799.7|leucine-rich repeats and immunoglobulin-like domains 2
hg19_v2_chrX_-_129402857_129402880	0.00324449	UGACCUA	ENST00000447817.1|ZNF280C|ENSG00000056277.11|zinc finger protein 280C 	ENST00000370978.4|ZNF280C|ENSG00000056277.11|zinc finger protein 280C
hg19_v2_chr10_-_99052382_99052413	0.003085	UGACCUA	ENST00000453547.2|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000466484.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000316676.8|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358308.3|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358531.4|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr10_+_73975742_73975830	0.0029945	UGACCUA	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr14_+_73704201_73704277	0.0028213	UGACCUA	ENST00000340738.5|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000427855.1|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000381166.3|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein
hg19_v2_chr19_-_49576198_49576198	0.00268261	UGACCUA	ENST00000221444.1|KCNA7|ENSG00000104848.1|potassium voltage-gated channel, shaker-related subfamily, member 7
hg19_v2_chr4_-_159593179_159593220	0.00228384	UGACCUA	ENST00000379205.4|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr20_-_58515344_58515366	0.00171259	UGACCUA	ENST00000370996.3|PPP1R3D|ENSG00000132825.5|protein phosphatase 1, regulatory subunit 3D
hg19_v2_chr6_-_42419649_42419789	0.00167663	UGACCUA	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr1_+_62902308_62902335	0.00147442	UGACCUA	ENST00000339950.4|USP1|ENSG00000162607.8|ubiquitin specific peptidase 1
hg19_v2_chr2_-_25475120_25475180	0.00127534	UGACCUA	ENST00000380746.4|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha 	ENST00000402667.1|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha
hg19_v2_chr3_-_123603137_123603203	0.000973026	UGACCUA	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr17_-_33416231_33416338	0.000797351	UGACCUA	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr18_+_49866496_49866548	0.000772063	UGACCUA	ENST00000442544.2|DCC|ENSG00000187323.7|deleted in colorectal carcinoma
hg19_v2_chr17_+_27717415_27717618	0.000495621	UGACCUA	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr8_+_110346546_110346619	0.000386597	UGACCUA	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr12_+_52203789_52203789	0.000362858	UGACCUA	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr7_+_28452130_28452154	0.000296242	UGACCUA	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr8_+_42010464_42010662	0.000212318	UGACCUA	ENST00000518421.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000174653.3|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000396926.3|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000521280.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000522288.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit
