hg19_v2_chr12_-_95611149_95611249	0.667636	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr7_-_139756791_139756791	0.522607	SOX3_SOX2	ENST00000489809.1|PARP12|ENSG00000059378.8|poly (ADP-ribose) polymerase family, member 12
hg19_v2_chr7_-_27219849_27219880	0.474988	SOX3_SOX2	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr12_+_95611536_95611543	0.419108	SOX3_SOX2	ENST00000549002.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr3_-_52719888_52719908	0.404952	SOX3_SOX2	ENST00000458294.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr17_+_40119801_40119821	0.38933	SOX3_SOX2	ENST00000585452.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr7_-_105926058_105926185	0.369657	SOX3_SOX2	ENST00000417537.1|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr12_+_95612006_95612042	0.36654	SOX3_SOX2	ENST00000551311.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000546445.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr3_-_139258521_139258671	0.358487	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr10_-_128359074_128359083	0.333949	SOX3_SOX2	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr5_-_65018834_65018863	0.330332	SOX3_SOX2	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr15_+_90744745_90744807	0.329136	SOX3_SOX2	ENST00000558051.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr12_+_95611569_95611608	0.327543	SOX3_SOX2	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr11_+_57365150_57365276	0.325282	SOX3_SOX2	ENST00000457869.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000340687.6|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378323.4|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378324.2|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000403558.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
hg19_v2_chr11_-_10830463_10830494	0.284007	SOX3_SOX2	ENST00000527419.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530211.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530702.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000524932.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000532570.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr3_-_52719912_52719995	0.277687	SOX3_SOX2	ENST00000420148.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr11_+_60691924_60691966	0.272892	SOX3_SOX2	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr15_-_74494779_74494799	0.271803	SOX3_SOX2	ENST00000571341.1|STRA6|ENSG00000137868.14|stimulated by retinoic acid 6
hg19_v2_chr1_-_200992827_200992867	0.263234	SOX3_SOX2	ENST00000332129.2|KIF21B|ENSG00000116852.10|kinesin family member 21B 	ENST00000422435.2|KIF21B|ENSG00000116852.10|kinesin family member 21B
hg19_v2_chr17_-_18585131_18585171	0.258159	SOX3_SOX2	ENST00000443457.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000583002.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chrX_+_150866779_150866779	0.250609	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr4_-_24586140_24586188	0.242583	SOX3_SOX2	ENST00000336812.4|DHX15|ENSG00000109606.8|DEAH (Asp-Glu-Ala-His) box helicase 15
hg19_v2_chr4_+_95128996_95129056	0.240254	SOX3_SOX2	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr2_-_1748214_1748295	0.234887	SOX3_SOX2	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr14_+_24641820_24641937	0.227972	SOX3_SOX2	ENST00000560501.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr16_+_53242350_53242398	0.22729	SOX3_SOX2	ENST00000565442.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr10_+_6244829_6244904	0.22728	SOX3_SOX2	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr20_-_4804244_4804293	0.224265	SOX3_SOX2	ENST00000379400.3|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr3_-_45267760_45267826	0.223506	SOX3_SOX2	ENST00000503771.1|TMEM158|ENSG00000249992.1|transmembrane protein 158 (gene/pseudogene)
hg19_v2_chr14_-_35344093_35344138	0.223459	SOX3_SOX2	ENST00000382422.2|BAZ1A|ENSG00000198604.6|bromodomain adjacent to zinc finger domain, 1A
hg19_v2_chr19_-_49864746_49864780	0.223066	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr12_+_15475462_15475487	0.22099	SOX3_SOX2	ENST00000543886.1|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000348962.2|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O
hg19_v2_chrX_+_12993336_12993363	0.218137	SOX3_SOX2	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr19_-_49362621_49362640	0.216023	SOX3_SOX2	ENST00000594195.1|PLEKHA4|ENSG00000105559.7|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 	ENST00000595867.1|PLEKHA4|ENSG00000105559.7|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
hg19_v2_chr16_+_30406423_30406447	0.215027	SOX3_SOX2	ENST00000524644.1|ZNF48|ENSG00000180035.6|zinc finger protein 48
hg19_v2_chr11_+_5711010_5711110	0.214343	SOX3_SOX2	ENST00000454828.1|TRIM22|ENSG00000132274.11|tripartite motif containing 22
hg19_v2_chr12_+_22778291_22778357	0.213156	SOX3_SOX2	ENST00000545979.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr4_-_40859132_40859209	0.212505	SOX3_SOX2	ENST00000543538.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000502841.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000504305.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000513516.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000510670.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2
hg19_v2_chr5_-_176037105_176037165	0.211876	SOX3_SOX2	ENST00000303991.4|GPRIN1|ENSG00000169258.6|G protein regulated inducer of neurite outgrowth 1
hg19_v2_chr12_-_109797249_109797293	0.211336	SOX3_SOX2	ENST00000538041.1|RP11-256L11.1|ENSG00000256560.1|RP11-256L11.1
hg19_v2_chr10_+_22605374_22605387	0.208672	SOX3_SOX2	ENST00000448361.1|COMMD3|ENSG00000148444.11|COMM domain containing 3
hg19_v2_chr1_-_46598371_46598708	0.203374	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr1_-_935519_935552	0.200045	SOX3_SOX2	ENST00000428771.2|HES4|ENSG00000188290.6|hes family bHLH transcription factor 4
hg19_v2_chr11_-_10829851_10829860	0.197882	SOX3_SOX2	ENST00000532082.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr5_-_172755056_172755219	0.197483	SOX3_SOX2	ENST00000520648.1|STC2|ENSG00000113739.6|stanniocalcin 2
hg19_v2_chr7_+_77167343_77167369	0.191238	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr2_-_47572207_47572229	0.190016	SOX3_SOX2	ENST00000441997.1|AC073283.4|ENSG00000234690.2|AC073283.4
hg19_v2_chr1_+_79115503_79115530	0.186627	SOX3_SOX2	ENST00000370747.4|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000438486.1|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000545124.1|IFI44|ENSG00000137965.6|interferon-induced protein 44
hg19_v2_chr4_+_26323764_26323831	0.183853	SOX3_SOX2	ENST00000514730.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region 	ENST00000507574.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr15_+_90744533_90744610	0.180594	SOX3_SOX2	ENST00000411539.2|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chrX_+_12993202_12993239	0.179666	SOX3_SOX2	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr22_-_36357671_36357714	0.174076	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr3_+_49977894_49977934	0.170899	SOX3_SOX2	ENST00000433811.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr17_+_41158742_41158822	0.16974	SOX3_SOX2	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr16_+_15528332_15528385	0.168651	SOX3_SOX2	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr12_-_54779511_54779577	0.167699	SOX3_SOX2	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr17_+_38171681_38171740	0.165868	SOX3_SOX2	ENST00000225474.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000331769.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394148.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000577675.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr13_+_49684445_49684517	0.165194	SOX3_SOX2	ENST00000398316.3|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr9_-_74979420_74979580	0.164844	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr12_+_95611516_95611527	0.164819	SOX3_SOX2	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chrX_+_78003204_78003248	0.164202	SOX3_SOX2	ENST00000435339.3|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4 	ENST00000514744.1|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4
hg19_v2_chr8_-_20161466_20161481	0.16413	SOX3_SOX2	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr15_-_40401062_40401093	0.163126	SOX3_SOX2	ENST00000354670.4|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000559701.1|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000557870.1|BMF|ENSG00000104081.9|Bcl2 modifying factor 	ENST00000558774.1|BMF|ENSG00000104081.9|Bcl2 modifying factor
hg19_v2_chr12_+_54378849_54378884	0.162733	SOX3_SOX2	ENST00000515593.1|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr14_-_61124977_61125037	0.162109	SOX3_SOX2	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr2_+_232573222_232573249	0.161189	SOX3_SOX2	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr17_+_65373531_65373577	0.161001	SOX3_SOX2	ENST00000580974.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr5_+_86563636_86563712	0.160938	SOX3_SOX2	ENST00000274376.6|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr22_+_30792846_30792978	0.160681	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr7_+_116312411_116312502	0.160328	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr7_-_74867509_74867634	0.159485	SOX3_SOX2	ENST00000426327.3|GATSL2|ENSG00000198750.7|GATS protein-like 2
hg19_v2_chr15_-_74495188_74495220	0.157805	SOX3_SOX2	ENST00000563965.1|STRA6|ENSG00000137868.14|stimulated by retinoic acid 6 	ENST00000395105.4|STRA6|ENSG00000137868.14|stimulated by retinoic acid 6
hg19_v2_chr9_-_131940526_131940546	0.157588	SOX3_SOX2	ENST00000372491.2|IER5L|ENSG00000188483.6|immediate early response 5-like
hg19_v2_chr20_-_56284816_56284958	0.157571	SOX3_SOX2	ENST00000395819.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000341744.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr1_+_200993071_200993094	0.15747	SOX3_SOX2	ENST00000446333.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1	ENST00000458003.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1
hg19_v2_chr9_-_74383302_74383437	0.156084	SOX3_SOX2	ENST00000377066.5|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chr19_+_18726786_18726884	0.155358	SOX3_SOX2	ENST00000594709.1|TMEM59L|ENSG00000105696.4|transmembrane protein 59-like
hg19_v2_chr10_+_91174486_91174528	0.155295	SOX3_SOX2	ENST00000416601.1|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr4_-_103266219_103266296	0.155187	SOX3_SOX2	ENST00000394833.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr11_+_65999265_65999320	0.153303	SOX3_SOX2	ENST00000528935.1|PACS1|ENSG00000175115.7|phosphofurin acidic cluster sorting protein 1
hg19_v2_chr4_+_89444961_89445032	0.151533	SOX3_SOX2	ENST00000513325.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3
hg19_v2_chr6_+_80714332_80714551	0.151385	SOX3_SOX2	ENST00000502580.1|TTK|ENSG00000112742.5|TTK protein kinase 	ENST00000511260.1|TTK|ENSG00000112742.5|TTK protein kinase
hg19_v2_chr22_-_30970498_30970541	0.150928	SOX3_SOX2	ENST00000431313.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr4_-_103266355_103266371	0.150239	SOX3_SOX2	ENST00000424970.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr16_+_3068393_3068446	0.149453	SOX3_SOX2	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr14_-_91884150_91884234	0.149088	SOX3_SOX2	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr2_+_232573208_232573219	0.149085	SOX3_SOX2	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr3_+_19988736_19988747	0.148039	SOX3_SOX2	ENST00000443878.1|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr17_+_72428218_72428264	0.147923	SOX3_SOX2	ENST00000392628.2|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr6_-_134639180_134639220	0.147244	SOX3_SOX2	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr1_-_65533390_65533443	0.146278	SOX3_SOX2	ENST00000448344.1|RP4-535B20.1|ENSG00000231485.1|RP4-535B20.1
hg19_v2_chr3_-_48601206_48601222	0.145501	SOX3_SOX2	ENST00000273610.3|UCN2|ENSG00000145040.3|urocortin 2
hg19_v2_chr9_-_4859260_4859260	0.143893	SOX3_SOX2	ENST00000599351.1|AL158147.2|ENSG00000269305.1|HCG2011465; Uncharacterized protein
hg19_v2_chr15_+_63335899_63336001	0.143604	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr14_+_64971438_64971450	0.142613	SOX3_SOX2	ENST00000555321.1|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr14_-_88459503_88459615	0.142041	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr15_-_52944231_52944268	0.140043	SOX3_SOX2	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr5_+_34656529_34656549	0.139731	SOX3_SOX2	ENST00000513974.1|RAI14|ENSG00000039560.9|retinoic acid induced 14 	ENST00000512629.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr12_-_104531945_104531996	0.138929	SOX3_SOX2	ENST00000551446.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr14_-_50999373_50999384	0.137845	SOX3_SOX2	ENST00000554273.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr8_+_8559406_8559465	0.137243	SOX3_SOX2	ENST00000519106.1|CLDN23|ENSG00000253958.1|claudin 23
hg19_v2_chr10_-_33247124_33247207	0.137077	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr16_-_73082274_73082274	0.136876	SOX3_SOX2	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr2_-_118943930_118943963	0.136709	SOX3_SOX2	ENST00000449075.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000414886.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000449819.1|AC093901.1|ENSG00000226856.1|AC093901.1
hg19_v2_chr17_-_982198_982386	0.136534	SOX3_SOX2	ENST00000571945.1|ABR|ENSG00000159842.10|active BCR-related 	ENST00000536794.2|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr7_+_69064566_69064597	0.136304	SOX3_SOX2	ENST00000403018.2|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr7_-_134143841_134143924	0.133709	SOX3_SOX2	ENST00000285930.4|AKR1B1|ENSG00000085662.9|aldo-keto reductase family 1, member B1 (aldose reductase)
hg19_v2_chr12_+_113344582_113344745	0.133688	SOX3_SOX2	ENST00000202917.5|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000445409.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000452357.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr8_+_145065521_145065622	0.132286	SOX3_SOX2	ENST00000534791.1|GRINA|ENSG00000178719.12|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
hg19_v2_chr17_+_38171614_38171635	0.132263	SOX3_SOX2	ENST00000583218.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394149.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr4_-_80994210_80994284	0.132061	SOX3_SOX2	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr12_-_96793142_96793182	0.131725	SOX3_SOX2	ENST00000552262.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17 	ENST00000551816.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17 	ENST00000552496.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr12_-_10588539_10588600	0.131137	SOX3_SOX2	ENST00000381902.2|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000381901.1|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000539033.1|NKG2-E|ENSG00000255641.1|Uncharacterized protein
hg19_v2_chr12_+_31477250_31477250	0.131059	SOX3_SOX2	ENST00000313737.4|AC024940.1|ENSG00000177340.4|AC024940.1
hg19_v2_chr10_+_82214052_82214111	0.130927	SOX3_SOX2	ENST00000372157.2|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000372164.3|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000372158.1|TSPAN14|ENSG00000108219.10|tetraspanin 14 	ENST00000341863.6|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr5_+_109025067_109025146	0.130646	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chrX_+_135229600_135229624	0.130434	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr6_+_32811861_32811872	0.130251	SOX3_SOX2	ENST00000453426.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr2_-_165424973_165425010	0.129869	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr8_+_39759794_39759899	0.12984	SOX3_SOX2	ENST00000518804.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000519154.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522495.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522840.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1
hg19_v2_chr20_-_30310693_30310719	0.129679	SOX3_SOX2	ENST00000307677.4|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420653.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr1_-_155880672_155880715	0.129331	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr5_-_90610200_90610226	0.12899	SOX3_SOX2	ENST00000511918.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000513626.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000607854.1|RP11-213H15.4|ENSG00000271762.1|RP11-213H15.4
hg19_v2_chrX_-_134049262_134049297	0.128488	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr12_-_31477072_31477110	0.128427	SOX3_SOX2	ENST00000454658.2|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr3_-_4927447_4927479	0.127907	SOX3_SOX2	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr12_+_54694979_54694993	0.126898	SOX3_SOX2	ENST00000552848.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr3_-_65583561_65583610	0.12642	SOX3_SOX2	ENST00000460329.2|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr14_+_101299520_101299615	0.126257	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr5_-_146833485_146833522	0.125658	SOX3_SOX2	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chrX_-_139866723_139866723	0.124196	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr6_-_127840021_127840047	0.124047	SOX3_SOX2	ENST00000465909.2|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chrX_+_135229559_135229576	0.123495	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr15_-_80695917_80695917	0.123402	SOX3_SOX2	ENST00000559008.1|RP11-210M15.2|ENSG00000259495.1|Uncharacterized protein
hg19_v2_chr19_-_23433144_23433204	0.123365	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr4_-_52883786_52883786	0.123263	SOX3_SOX2	ENST00000343457.3|LRRC66|ENSG00000188993.3|leucine rich repeat containing 66
hg19_v2_chr1_+_228337553_228337602	0.121413	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr12_-_122240792_122240858	0.121038	SOX3_SOX2	ENST00000545885.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000542933.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000541657.1|RHOF|ENSG00000139725.3|ras homolog family member F (in filopodia) 	ENST00000428029.2|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000541694.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000536662.1|AC084018.1|ENSG00000212694.4|AC084018.1	ENST00000535643.1|AC084018.1|ENSG00000212694.4|AC084018.1
hg19_v2_chr11_-_46848393_46848439	0.120743	SOX3_SOX2	ENST00000526496.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr8_-_139926236_139926269	0.11951	SOX3_SOX2	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chr20_-_30310656_30310685	0.119297	SOX3_SOX2	ENST00000376055.4|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr10_-_32667660_32667735	0.119259	SOX3_SOX2	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr2_+_69240511_69240532	0.119251	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr2_-_9143786_9143942	0.118612	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr13_+_110959598_110959614	0.118559	SOX3_SOX2	ENST00000360467.5|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chr3_-_171489085_171489158	0.118416	SOX3_SOX2	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr11_+_36317830_36317850	0.118164	SOX3_SOX2	ENST00000530639.1|PRR5L|ENSG00000135362.9|proline rich 5 like
hg19_v2_chr6_+_21666633_21666681	0.117425	SOX3_SOX2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr6_-_41254403_41254457	0.117329	SOX3_SOX2	ENST00000589614.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000334475.6|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000591620.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000244709.4|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1
hg19_v2_chr9_-_5830768_5830787	0.117061	SOX3_SOX2	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chr9_-_88874519_88874577	0.116944	SOX3_SOX2	ENST00000376001.3|C9orf153|ENSG00000187753.8|chromosome 9 open reading frame 153 	ENST00000339137.3|C9orf153|ENSG00000187753.8|chromosome 9 open reading frame 153
hg19_v2_chr6_+_56954867_56954882	0.116691	SOX3_SOX2	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr5_-_147211226_147211349	0.116687	SOX3_SOX2	ENST00000296695.5|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr3_-_79068138_79068214	0.116162	SOX3_SOX2	ENST00000495273.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr5_-_111091948_111091994	0.11608	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr11_-_9336117_9336196	0.116033	SOX3_SOX2	ENST00000527813.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B 	ENST00000533723.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr2_+_172949468_172949522	0.115589	SOX3_SOX2	ENST00000361609.4|DLX1|ENSG00000144355.10|distal-less homeobox 1 	ENST00000469444.2|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr10_+_91174314_91174403	0.114229	SOX3_SOX2	ENST00000371795.4|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr5_-_179780312_179780387	0.114156	SOX3_SOX2	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr3_+_48507621_48507689	0.114085	SOX3_SOX2	ENST00000456089.1|TREX1|ENSG00000213689.5|three prime repair exonuclease 1
hg19_v2_chr11_-_95523500_95523580	0.113755	SOX3_SOX2	ENST00000540054.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr6_+_126240442_126240459	0.113612	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr18_+_29078131_29078218	0.113382	SOX3_SOX2	ENST00000585206.1|DSG2|ENSG00000046604.8|desmoglein 2
hg19_v2_chr15_+_89631647_89631725	0.11259	SOX3_SOX2	ENST00000569550.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565066.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565973.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr5_+_34656569_34656588	0.1125	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr12_+_9066472_9066492	0.112418	SOX3_SOX2	ENST00000538657.1|PHC1|ENSG00000111752.6|polyhomeotic homolog 1 (Drosophila)
hg19_v2_chr12_-_11150474_11150474	0.110767	SOX3_SOX2	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chrY_+_15016013_15016029	0.110569	SOX3_SOX2	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr19_+_56159421_56159433	0.109419	SOX3_SOX2	ENST00000587213.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106
hg19_v2_chr16_+_53241854_53241953	0.109326	SOX3_SOX2	ENST00000565803.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr5_+_102200948_102201183	0.108838	SOX3_SOX2	ENST00000511477.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000506006.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000509832.1|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr7_-_99774945_99775026	0.108796	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr16_+_24550857_24550878	0.108557	SOX3_SOX2	ENST00000568015.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr8_-_42358742_42358787	0.108498	SOX3_SOX2	ENST00000517366.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr5_+_113769205_113769227	0.108411	SOX3_SOX2	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr12_-_125401885_125401914	0.108329	SOX3_SOX2	ENST00000542416.1|UBC|ENSG00000150991.10|ubiquitin C
hg19_v2_chr1_-_16539094_16539175	0.107793	SOX3_SOX2	ENST00000270747.3|ARHGEF19|ENSG00000142632.12|Rho guanine nucleotide exchange factor (GEF) 19
hg19_v2_chr13_+_113656092_113656207	0.107016	SOX3_SOX2	ENST00000397024.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr5_+_34656331_34656351	0.106147	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr12_-_71003568_71003629	0.106035	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr18_-_45456693_45456733	0.104649	SOX3_SOX2	ENST00000587421.1|SMAD2|ENSG00000175387.11|SMAD family member 2
hg19_v2_chr6_+_32811885_32811915	0.104437	SOX3_SOX2	ENST00000458296.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000413039.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000429600.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000412095.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000395330.1|PSMB9|ENSG00000240065.3|proteasome (prosome, macropain) subunit, beta type, 9 	ENST00000415067.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr6_-_46620522_46620560	0.104256	SOX3_SOX2	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr16_-_71918033_71918107	0.104081	SOX3_SOX2	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr1_-_8086343_8086378	0.103972	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr6_-_134639042_134639056	0.103859	SOX3_SOX2	ENST00000461976.2|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr4_+_71588372_71588404	0.103348	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr2_+_210518057_210518117	0.103329	SOX3_SOX2	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr12_+_70760056_70760085	0.102934	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr2_-_182545603_182545603	0.102842	SOX3_SOX2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr5_+_179135246_179135327	0.102809	SOX3_SOX2	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr4_-_103266626_103266647	0.102762	SOX3_SOX2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr14_-_73493825_73493920	0.102756	SOX3_SOX2	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr17_+_57642886_57643006	0.102654	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr7_+_26191809_26191890	0.102217	SOX3_SOX2	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chrX_+_135252050_135252085	0.101747	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr19_-_10341948_10341965	0.101711	SOX3_SOX2	ENST00000590320.1|S1PR2|ENSG00000267534.1|sphingosine-1-phosphate receptor 2 	ENST00000592342.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1 	ENST00000588952.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1
hg19_v2_chr1_+_164529004_164529060	0.101487	SOX3_SOX2	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr22_-_39150947_39150998	0.100939	SOX3_SOX2	ENST00000411587.2|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000420859.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000452294.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000456894.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr10_+_82214010_82214021	0.100857	SOX3_SOX2	ENST00000481124.1|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr19_+_21324863_21324880	0.100842	SOX3_SOX2	ENST00000598331.1|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr17_-_56605341_56605363	0.100327	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr1_+_213123976_213124009	0.100013	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr8_+_63161550_63161633	0.099954	SOX3_SOX2	ENST00000328472.5|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr13_-_41593425_41593480	0.0989407	SOX3_SOX2	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr2_+_54683419_54683442	0.0985393	SOX3_SOX2	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr2_+_153191706_153191751	0.0983605	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr16_+_88636875_88636886	0.097829	SOX3_SOX2	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr14_-_57960545_57960595	0.0977105	SOX3_SOX2	ENST00000526336.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000216445.3|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr14_+_101293687_101293748	0.0976599	SOX3_SOX2	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr4_+_146403912_146403972	0.0974848	SOX3_SOX2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr17_+_37617721_37617773	0.097326	SOX3_SOX2	ENST00000584632.1|CDK12|ENSG00000167258.9|cyclin-dependent kinase 12
hg19_v2_chr7_-_127671674_127671774	0.0966453	SOX3_SOX2	ENST00000478726.1|LRRC4|ENSG00000128594.3|leucine rich repeat containing 4
hg19_v2_chr20_-_43150601_43150751	0.0962375	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr12_+_1099675_1099751	0.0958618	SOX3_SOX2	ENST00000545318.2|ERC1|ENSG00000082805.15|ELKS/RAB6-interacting/CAST family member 1
hg19_v2_chr4_-_129491686_129491703	0.0958288	SOX3_SOX2	ENST00000514265.1|RP11-184M15.1|ENSG00000248187.1|RP11-184M15.1
hg19_v2_chr19_-_56904799_56904919	0.0957192	SOX3_SOX2	ENST00000589895.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000589143.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000301310.4|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000586929.1|ZNF582|ENSG00000018869.12|zinc finger protein 582
hg19_v2_chr10_+_121578211_121578248	0.095596	SOX3_SOX2	ENST00000369080.3|INPP5F|ENSG00000198825.7|inositol polyphosphate-5-phosphatase F
hg19_v2_chr17_-_62502022_62502074	0.0950951	SOX3_SOX2	ENST00000578804.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr10_+_102106829_102106881	0.0950105	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr19_-_39264072_39264132	0.094755	SOX3_SOX2	ENST00000599035.1|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7 	ENST00000378626.4|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7
hg19_v2_chr1_+_197886461_197886558	0.0944185	SOX3_SOX2	ENST00000367388.3|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000337020.2|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367387.4|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr7_-_105925558_105925638	0.0940169	SOX3_SOX2	ENST00000222553.3|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr1_+_156589198_156589234	0.0938176	SOX3_SOX2	ENST00000456112.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr17_+_77030267_77030391	0.0936512	SOX3_SOX2	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr5_+_135364584_135364691	0.0936101	SOX3_SOX2	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr6_-_134861089_134861168	0.0934063	SOX3_SOX2	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr19_+_1491144_1491223	0.0933171	SOX3_SOX2	ENST00000233596.3|REEP6|ENSG00000115255.6|receptor accessory protein 6
hg19_v2_chr19_+_51815102_51815102	0.0931311	SOX3_SOX2	ENST00000270642.8|IGLON5|ENSG00000142549.9|IgLON family member 5
hg19_v2_chr8_+_79428539_79428606	0.0928263	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr11_-_14358620_14358712	0.0923615	SOX3_SOX2	ENST00000531421.1|RRAS2|ENSG00000133818.8|related RAS viral (r-ras) oncogene homolog 2
hg19_v2_chr8_+_145065705_145065731	0.0923001	SOX3_SOX2	ENST00000533044.1|GRINA|ENSG00000178719.12|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
hg19_v2_chr8_-_124553437_124553453	0.092206	SOX3_SOX2	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr15_+_78730622_78730646	0.091822	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chrX_+_135251783_135251813	0.0916072	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr17_+_77018896_77018919	0.0910165	SOX3_SOX2	ENST00000578229.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr7_+_16828866_16828866	0.0904004	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr2_-_26205340_26205381	0.0902086	SOX3_SOX2	ENST00000264712.3|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr2_+_169923577_169923592	0.0895713	SOX3_SOX2	ENST00000432060.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr14_+_103589789_103589804	0.0892578	SOX3_SOX2	ENST00000558056.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2 	ENST00000560869.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr3_-_128207349_128207386	0.0892374	SOX3_SOX2	ENST00000487848.1|GATA2|ENSG00000179348.7|GATA binding protein 2
hg19_v2_chr6_-_139695757_139695795	0.0889738	SOX3_SOX2	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr1_+_244998602_244998646	0.0883612	SOX3_SOX2	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr2_-_55276320_55276334	0.0883215	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr10_-_113943447_113943536	0.0883045	SOX3_SOX2	ENST00000369425.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000348367.4|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000423155.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial
hg19_v2_chr7_+_102553430_102553456	0.0881315	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr8_+_86376081_86376142	0.0880594	SOX3_SOX2	ENST00000285379.5|CA2|ENSG00000104267.5|carbonic anhydrase II
hg19_v2_chr1_-_33815486_33815517	0.0876897	SOX3_SOX2	ENST00000373418.3|PHC2|ENSG00000134686.12|polyhomeotic homolog 2 (Drosophila)
hg19_v2_chr4_+_76649753_76649777	0.087565	SOX3_SOX2	ENST00000603759.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr15_-_42186248_42186275	0.0873552	SOX3_SOX2	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chr11_+_110001723_110001732	0.0869803	SOX3_SOX2	ENST00000528673.1|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr3_+_183415558_183415649	0.086964	SOX3_SOX2	ENST00000305135.5|YEATS2|ENSG00000163872.11|YEATS domain containing 2
hg19_v2_chr10_+_102505468_102505546	0.0867687	SOX3_SOX2	ENST00000361791.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000355243.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000428433.1|PAX2|ENSG00000075891.17|paired box 2 	ENST00000370296.2|PAX2|ENSG00000075891.17|paired box 2
hg19_v2_chr19_-_17445613_17445648	0.08658	SOX3_SOX2	ENST00000159087.4|ANO8|ENSG00000074855.6|anoctamin 8
hg19_v2_chr2_+_11679963_11679986	0.0864851	SOX3_SOX2	ENST00000263834.5|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1
hg19_v2_chr2_+_10442993_10443051	0.0859921	SOX3_SOX2	ENST00000423674.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1 	ENST00000307845.3|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr2_-_61765732_61765761	0.0853624	SOX3_SOX2	ENST00000443240.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000436018.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr1_-_17445930_17445954	0.0853376	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr19_+_57106624_57106644	0.0850558	SOX3_SOX2	ENST00000599599.1|ZNF71|ENSG00000197951.4|zinc finger protein 71
hg19_v2_chr13_-_24007815_24007872	0.0850032	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr4_+_95129061_95129198	0.0849139	SOX3_SOX2	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr7_-_148581360_148581425	0.0840175	SOX3_SOX2	ENST00000320356.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000541220.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000483967.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000536783.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr3_+_151986709_151986892	0.0839553	SOX3_SOX2	ENST00000495875.2|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000493459.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324210.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000459747.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr5_-_157002749_157002768	0.0838951	SOX3_SOX2	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr12_+_104680793_104680837	0.0838671	SOX3_SOX2	ENST00000529546.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000529751.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000540716.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000528079.2|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526580.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr2_+_9778872_9778917	0.0835475	SOX3_SOX2	ENST00000478468.1|RP11-521D12.1|ENSG00000240687.1|RP11-521D12.1
hg19_v2_chr1_+_178482262_178482279	0.083433	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr10_+_22610876_22611035	0.0834229	SOX3_SOX2	ENST00000442508.1|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chrX_+_135579238_135579416	0.0831426	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr10_+_22605304_22605372	0.0830073	SOX3_SOX2	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr9_-_98268883_98268947	0.082834	SOX3_SOX2	ENST00000551630.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000548420.1|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr19_+_57019212_57019250	0.0820675	SOX3_SOX2	ENST00000308031.5|ZNF471|ENSG00000196263.3|zinc finger protein 471 	ENST00000591537.1|ZNF471|ENSG00000196263.3|zinc finger protein 471
hg19_v2_chr3_+_44596679_44596726	0.0820615	SOX3_SOX2	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr14_-_50698276_50698304	0.0820525	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr9_+_20927764_20927855	0.0818572	SOX3_SOX2	ENST00000603044.1|FOCAD|ENSG00000188352.8|focadhesin 	ENST00000604254.1|FOCAD|ENSG00000188352.8|focadhesin
hg19_v2_chr22_-_32555275_32555296	0.081828	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr1_-_154155675_154155709	0.0818038	SOX3_SOX2	ENST00000330188.9|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341485.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr20_+_6748311_6748352	0.0817877	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr6_-_30654977_30655009	0.0814054	SOX3_SOX2	ENST00000399199.3|PPP1R18|ENSG00000146112.7|protein phosphatase 1, regulatory subunit 18
hg19_v2_chr2_+_8822113_8822196	0.0812228	SOX3_SOX2	ENST00000396290.1|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 	ENST00000331129.3|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
hg19_v2_chr17_+_33914276_33914386	0.0810443	SOX3_SOX2	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr19_+_21203426_21203475	0.080997	SOX3_SOX2	ENST00000261560.5|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000599548.1|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000594110.1|ZNF430|ENSG00000118620.8|zinc finger protein 430
hg19_v2_chr6_-_72129806_72129970	0.0808282	SOX3_SOX2	ENST00000413945.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000602878.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000436803.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000421704.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000441570.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr12_-_46766577_46766650	0.0805994	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr7_+_26438187_26438351	0.0805697	SOX3_SOX2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr7_-_41742697_41742714	0.080075	SOX3_SOX2	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr17_+_30813576_30813637	0.0799419	SOX3_SOX2	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr6_-_133055815_133055834	0.0795782	SOX3_SOX2	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr6_+_30848829_30848848	0.0791144	SOX3_SOX2	ENST00000508317.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr18_+_12703002_12703066	0.0790779	SOX3_SOX2	ENST00000590217.1|PSMG2|ENSG00000128789.16|proteasome (prosome, macropain) assembly chaperone 2
hg19_v2_chr14_-_57960456_57960478	0.0787665	SOX3_SOX2	ENST00000534126.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000422976.2|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr12_-_57400227_57400245	0.0786613	SOX3_SOX2	ENST00000300101.2|ZBTB39|ENSG00000166860.2|zinc finger and BTB domain containing 39
hg19_v2_chr3_-_121740969_121741106	0.0785771	SOX3_SOX2	ENST00000393631.1|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000273691.3|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000344209.5|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1
hg19_v2_chr9_-_4299874_4299916	0.0785577	SOX3_SOX2	ENST00000381971.3|GLIS3|ENSG00000107249.17|GLIS family zinc finger 3 	ENST00000477901.1|GLIS3|ENSG00000107249.17|GLIS family zinc finger 3
hg19_v2_chr3_+_193809263_193809350	0.0783508	SOX3_SOX2	ENST00000457815.1|RP11-135A1.3|ENSG00000229964.1|RP11-135A1.3
hg19_v2_chr1_+_169075554_169075571	0.0781259	SOX3_SOX2	ENST00000367815.4|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr6_+_144606817_144606837	0.0779587	SOX3_SOX2	ENST00000433557.1|UTRN|ENSG00000152818.14|utrophin
hg19_v2_chr17_-_42441204_42441243	0.0776957	SOX3_SOX2	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr2_+_10183651_10183713	0.077408	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chr15_-_45459704_45459750	0.0774048	SOX3_SOX2	ENST00000558039.1|CTD-2651B20.1|ENSG00000259539.1|CTD-2651B20.1
hg19_v2_chr10_-_99393208_99393237	0.0771134	SOX3_SOX2	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr7_+_106810165_106810374	0.0770725	SOX3_SOX2	ENST00000468401.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000497535.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000485846.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr22_+_30792980_30793047	0.0770381	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr8_+_94752349_94752349	0.0769482	SOX3_SOX2	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chr6_-_127840336_127840452	0.0766984	SOX3_SOX2	ENST00000525778.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr10_+_82213904_82213922	0.0766765	SOX3_SOX2	ENST00000429989.3|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr2_-_158182322_158182358	0.0764586	SOX3_SOX2	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr17_-_7297833_7297889	0.0764098	SOX3_SOX2	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr2_+_27071292_27071376	0.0761191	SOX3_SOX2	ENST00000431402.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5 	ENST00000434719.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr3_+_141105235_141105307	0.0761064	SOX3_SOX2	ENST00000503809.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chrX_-_15683147_15683159	0.0760981	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr2_+_210444142_210444194	0.0760967	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr8_-_73793975_73794038	0.0760663	SOX3_SOX2	ENST00000523881.1|RP11-1145L24.1|ENSG00000253784.1|RP11-1145L24.1
hg19_v2_chr1_-_28520447_28520453	0.0760354	SOX3_SOX2	ENST00000539896.1|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr16_+_31724618_31724630	0.075973	SOX3_SOX2	ENST00000530881.1|ZNF720|ENSG00000197302.6|zinc finger protein 720 	ENST00000529515.1|ZNF720|ENSG00000197302.6|zinc finger protein 720
hg19_v2_chr2_-_235405679_235405739	0.0754678	SOX3_SOX2	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr2_-_26205550_26205624	0.075449	SOX3_SOX2	ENST00000405914.1|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr9_+_112810878_112810985	0.0751601	SOX3_SOX2	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr8_-_80993010_80993073	0.0751479	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr17_+_65374075_65374271	0.0750671	SOX3_SOX2	ENST00000581322.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chrX_+_135251835_135251887	0.0748304	SOX3_SOX2	ENST00000456445.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chrX_-_19817869_19817922	0.0747726	SOX3_SOX2	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr6_+_35704855_35704874	0.0745589	SOX3_SOX2	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr5_+_8839844_8839877	0.0744652	SOX3_SOX2	ENST00000510229.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3	ENST00000506655.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3	ENST00000510067.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3
hg19_v2_chr4_-_159080806_159080833	0.0744585	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr2_-_224903995_224904036	0.0743404	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr13_+_98795664_98795734	0.0742461	SOX3_SOX2	ENST00000376581.5|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr8_+_26435359_26435426	0.0740249	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr1_-_145715565_145715614	0.0739065	SOX3_SOX2	ENST00000369288.2|CD160|ENSG00000117281.11|CD160 molecule 	ENST00000369290.1|CD160|ENSG00000117281.11|CD160 molecule 	ENST00000401557.3|CD160|ENSG00000117281.11|CD160 molecule
hg19_v2_chr11_-_65640071_65640125	0.0738686	SOX3_SOX2	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr5_-_157002775_157002790	0.0737059	SOX3_SOX2	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr22_-_30970560_30970577	0.0733674	SOX3_SOX2	ENST00000402369.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000406361.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr16_+_68279256_68279309	0.0728063	SOX3_SOX2	ENST00000564827.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000566188.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000444212.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000568082.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chr11_+_65408273_65408341	0.072697	SOX3_SOX2	ENST00000394227.3|SIPA1|ENSG00000213445.4|signal-induced proliferation-associated 1
hg19_v2_chr21_+_30671690_30671762	0.0726754	SOX3_SOX2	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr1_-_161015752_161015778	0.0724451	SOX3_SOX2	ENST00000435396.1|USF1|ENSG00000158773.10|upstream transcription factor 1 	ENST00000368021.3|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr14_+_35761580_35761679	0.0722497	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr2_-_200323414_200323468	0.0721587	SOX3_SOX2	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr12_+_28605426_28605475	0.0718175	SOX3_SOX2	ENST00000542801.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr15_-_41166414_41166487	0.0717236	SOX3_SOX2	ENST00000220507.4|RHOV|ENSG00000104140.6|ras homolog family member V
hg19_v2_chr10_+_101419187_101419313	0.0716457	SOX3_SOX2	ENST00000370489.4|ENTPD7|ENSG00000198018.6|ectonucleoside triphosphate diphosphohydrolase 7
hg19_v2_chr1_+_212797789_212797818	0.0716343	SOX3_SOX2	ENST00000294829.3|FAM71A|ENSG00000162771.6|family with sequence similarity 71, member A
hg19_v2_chr6_-_132834184_132834337	0.0714608	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr10_+_90672113_90672113	0.0714327	SOX3_SOX2	ENST00000371922.1|STAMBPL1|ENSG00000138134.7|STAM binding protein-like 1
hg19_v2_chr19_+_1452188_1452221	0.0710629	SOX3_SOX2	ENST00000587149.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr18_+_20494078_20494108	0.0707085	SOX3_SOX2	ENST00000579124.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000577588.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000582354.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000581819.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8
hg19_v2_chr5_+_110073853_110073866	0.0706501	SOX3_SOX2	ENST00000513807.1|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46 	ENST00000509442.2|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46
hg19_v2_chr2_-_9771075_9771153	0.0705795	SOX3_SOX2	ENST00000446619.1|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 	ENST00000238081.3|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr6_+_37787704_37787718	0.0701387	SOX3_SOX2	ENST00000474522.1|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr3_+_69985734_69985754	0.0700594	SOX3_SOX2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr2_+_54684327_54684399	0.0700544	SOX3_SOX2	ENST00000389980.3|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr5_-_114515734_114515944	0.0699198	SOX3_SOX2	ENST00000514154.1|TRIM36|ENSG00000152503.5|tripartite motif containing 36 	ENST00000282369.3|TRIM36|ENSG00000152503.5|tripartite motif containing 36
hg19_v2_chr17_-_49198216_49198236	0.0699122	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr7_+_20370300_20370359	0.0698833	SOX3_SOX2	ENST00000537992.1|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr7_+_129015671_129015685	0.0696835	SOX3_SOX2	ENST00000466993.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr19_+_13906250_13906274	0.0696648	SOX3_SOX2	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr19_-_51141196_51141302	0.0695039	SOX3_SOX2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr17_-_40337470_40337470	0.0694999	SOX3_SOX2	ENST00000293330.1|HCRT|ENSG00000161610.1|hypocretin (orexin) neuropeptide precursor
hg19_v2_chr2_-_235405168_235405277	0.06925	SOX3_SOX2	ENST00000339728.3|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr7_-_32931623_32931756	0.069118	SOX3_SOX2	ENST00000452926.1|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr5_+_154173697_154173770	0.0690677	SOX3_SOX2	ENST00000518742.1|LARP1|ENSG00000155506.12|La ribonucleoprotein domain family, member 1
hg19_v2_chr2_+_27071045_27071157	0.0688357	SOX3_SOX2	ENST00000401478.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr14_-_102976135_102976160	0.0687785	SOX3_SOX2	ENST00000560748.1|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr5_+_98104978_98105010	0.0687364	SOX3_SOX2	ENST00000308234.7|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr7_+_77167376_77167395	0.0686446	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chrX_+_17653413_17653413	0.068627	SOX3_SOX2	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr13_+_76334795_76334809	0.0686086	SOX3_SOX2	ENST00000526202.1|LMO7|ENSG00000136153.15|LIM domain 7 	ENST00000465261.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr8_+_145064215_145064232	0.0686018	SOX3_SOX2	ENST00000313269.5|GRINA|ENSG00000178719.12|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
hg19_v2_chr12_+_69979210_69979252	0.0685886	SOX3_SOX2	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chrX_+_44732757_44732860	0.0684719	SOX3_SOX2	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr7_+_77166592_77166653	0.0680732	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr14_-_64971288_64971316	0.0678918	SOX3_SOX2	ENST00000394715.1|ZBTB25|ENSG00000089775.7|zinc finger and BTB domain containing 25
hg19_v2_chr22_-_38712978_38713031	0.0677587	SOX3_SOX2	ENST00000430335.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr7_-_17500294_17500304	0.0677507	SOX3_SOX2	ENST00000439046.1|AC019117.2|ENSG00000236039.1|AC019117.2
hg19_v2_chr20_+_60698180_60698208	0.0677167	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr3_-_148939598_148939622	0.0676661	SOX3_SOX2	ENST00000455472.3|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr22_-_20256054_20256054	0.0676412	SOX3_SOX2	ENST00000043402.7|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr6_+_13925098_13925163	0.0675641	SOX3_SOX2	ENST00000488300.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000544682.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000420478.2|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr2_+_207220463_207220463	0.0675624	SOX3_SOX2	ENST00000598562.1|AC017081.1|ENSG00000269633.1|Uncharacterized protein
hg19_v2_chr1_+_100111580_100111773	0.0675615	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr1_+_92632542_92632609	0.0672634	SOX3_SOX2	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chr6_+_30848740_30848768	0.0670724	SOX3_SOX2	ENST00000505534.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr9_+_116343192_116343225	0.0670156	SOX3_SOX2	ENST00000471324.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chrX_-_128977364_128977436	0.0666893	SOX3_SOX2	ENST00000371064.3|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr4_+_69917078_69917101	0.0664885	SOX3_SOX2	ENST00000502942.1|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr8_+_42873548_42873567	0.0663208	SOX3_SOX2	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chr13_-_31736132_31736176	0.0660636	SOX3_SOX2	ENST00000429785.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr17_-_76921459_76921478	0.0660285	SOX3_SOX2	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr2_-_20550416_20550463	0.0656783	SOX3_SOX2	ENST00000403432.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2 	ENST00000424110.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr11_-_47521309_47521319	0.0656065	SOX3_SOX2	ENST00000535982.1|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1
hg19_v2_chr2_+_149402989_149402989	0.0655295	SOX3_SOX2	ENST00000397424.2|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr1_-_154155595_154155673	0.0653864	SOX3_SOX2	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr1_+_212968025_212968164	0.0653196	SOX3_SOX2	ENST00000530399.2|TATDN3|ENSG00000203705.6|TatD DNase domain containing 3
hg19_v2_chr17_-_56065540_56065627	0.0653153	SOX3_SOX2	ENST00000583932.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chr16_-_65268795_65268836	0.0651153	SOX3_SOX2	ENST00000565901.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2	ENST00000567058.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2
hg19_v2_chr19_-_37958318_37958365	0.0650854	SOX3_SOX2	ENST00000316950.6|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000591710.1|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chrX_-_110655306_110655330	0.0650496	SOX3_SOX2	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr3_+_41236325_41236401	0.0649441	SOX3_SOX2	ENST00000426215.1|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa 	ENST00000405570.1|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa
hg19_v2_chr1_-_204436344_204436474	0.0647645	SOX3_SOX2	ENST00000367184.2|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr1_-_153538292_153538342	0.0646863	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr10_-_89577910_89578010	0.0645891	SOX3_SOX2	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr4_+_41614720_41614734	0.0642094	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr5_+_102201509_102201528	0.064179	SOX3_SOX2	ENST00000348126.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000379787.4|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr8_-_66546373_66546428	0.0640823	SOX3_SOX2	ENST00000518908.1|ARMC1|ENSG00000104442.5|armadillo repeat containing 1 	ENST00000458464.2|ARMC1|ENSG00000104442.5|armadillo repeat containing 1 	ENST00000519352.1|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr1_+_154193643_154193804	0.0640407	SOX3_SOX2	ENST00000456325.1|UBAP2L|ENSG00000143569.14|ubiquitin associated protein 2-like
hg19_v2_chr6_+_90192974_90193122	0.0638049	SOX3_SOX2	ENST00000520458.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr9_+_127023704_127023756	0.0636677	SOX3_SOX2	ENST00000373596.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6 	ENST00000425237.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6
hg19_v2_chr4_-_83483395_83483510	0.0636541	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr20_-_45985414_45985462	0.0635127	SOX3_SOX2	ENST00000461685.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000372023.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000540497.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000435836.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000471951.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000352431.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000396281.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000355972.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000360911.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr17_+_33914424_33914455	0.0633159	SOX3_SOX2	ENST00000590432.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr2_-_127977654_127977654	0.0631289	SOX3_SOX2	ENST00000409327.1|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr19_+_56905024_56905180	0.0629753	SOX3_SOX2	ENST00000591172.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000589888.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000587979.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000585659.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000593109.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head)
hg19_v2_chrX_-_67653291_67653369	0.0629377	SOX3_SOX2	ENST00000540071.1|OPHN1|ENSG00000079482.11|oligophrenin 1
hg19_v2_chr4_-_170192000_170192115	0.0628065	SOX3_SOX2	ENST00000502315.1|SH3RF1|ENSG00000154447.10|SH3 domain containing ring finger 1
hg19_v2_chr4_-_54424366_54424394	0.0627712	SOX3_SOX2	ENST00000306888.2|LNX1|ENSG00000072201.9|ligand of numb-protein X 1, E3 ubiquitin protein ligase
hg19_v2_chr12_+_50898881_50898907	0.0627476	SOX3_SOX2	ENST00000301180.5|DIP2B|ENSG00000066084.8|DIP2 disco-interacting protein 2 homolog B (Drosophila)
hg19_v2_chr19_-_821931_821981	0.0626674	SOX3_SOX2	ENST00000359894.2|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000520876.3|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000519502.1|LPPR3|ENSG00000129951.14|hsa-mir-3187
hg19_v2_chr2_+_228337079_228337092	0.06266	SOX3_SOX2	ENST00000409315.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000373671.3|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000409171.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr4_+_47487285_47487366	0.0625597	SOX3_SOX2	ENST00000273859.3|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D 	ENST00000504445.1|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D
hg19_v2_chr11_+_76494253_76494317	0.0622639	SOX3_SOX2	ENST00000333090.4|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr19_-_10047219_10047235	0.0621784	SOX3_SOX2	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr6_-_127840453_127840507	0.0620816	SOX3_SOX2	ENST00000556132.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr6_+_89790459_89790479	0.062068	SOX3_SOX2	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr19_-_12267524_12267564	0.0619208	SOX3_SOX2	ENST00000455799.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000355738.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000439556.2|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000542938.1|ZNF625|ENSG00000257591.1|zinc finger protein 625
hg19_v2_chr3_+_39509070_39509101	0.0618575	SOX3_SOX2	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr5_-_149792295_149792332	0.0618211	SOX3_SOX2	ENST00000518797.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000524315.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000009530.7|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000377795.3|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain
hg19_v2_chr16_-_73093597_73093597	0.0616808	SOX3_SOX2	ENST00000397992.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr3_-_120170052_120170100	0.0616611	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr17_+_33914460_33914536	0.0615336	SOX3_SOX2	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr17_+_72427477_72427667	0.0614972	SOX3_SOX2	ENST00000342648.5|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C 	ENST00000481232.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr17_-_43138463_43138505	0.0612987	SOX3_SOX2	ENST00000310604.4|DCAKD|ENSG00000172992.7|dephospho-CoA kinase domain containing
hg19_v2_chr14_-_21562671_21562702	0.0612019	SOX3_SOX2	ENST00000554923.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chrX_-_10645773_10645795	0.0611692	SOX3_SOX2	ENST00000453318.2|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr3_-_52719810_52719883	0.0610609	SOX3_SOX2	ENST00000424867.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000394830.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000431678.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000450271.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr1_+_151682909_151682909	0.0610391	SOX3_SOX2	ENST00000326413.3|RIIAD1|ENSG00000178796.8|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 	ENST00000442233.2|AL589765.1|ENSG00000240510.2|Uncharacterized protein; cDNA FLJ36032 fis, clone TESTI2017069
hg19_v2_chr12_+_49761147_49761167	0.0608199	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr14_-_88459182_88459236	0.0608141	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr20_-_30310797_30310901	0.0607745	SOX3_SOX2	ENST00000422920.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr8_-_105601134_105601252	0.0607482	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr4_-_106629796_106629863	0.0605288	SOX3_SOX2	ENST00000416543.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000515819.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000420368.2|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000503746.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000340139.5|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000433009.1|INTS12|ENSG00000138785.10|integrator complex subunit 12
hg19_v2_chr3_+_149531607_149531651	0.0604051	SOX3_SOX2	ENST00000468648.1|RNF13|ENSG00000082996.15|ring finger protein 13 	ENST00000459632.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr15_-_59500973_59500990	0.0603895	SOX3_SOX2	ENST00000560749.1|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr7_+_129015484_129015519	0.0602816	SOX3_SOX2	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr5_+_34656450_34656523	0.0601515	SOX3_SOX2	ENST00000514527.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr8_-_66753682_66753743	0.0600166	SOX3_SOX2	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr6_-_133055896_133055910	0.0599668	SOX3_SOX2	ENST00000367927.5|VNN3|ENSG00000093134.9|vanin 3 	ENST00000425515.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000207771.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000392393.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000450865.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000392394.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr2_+_160590469_160590485	0.0597122	SOX3_SOX2	ENST00000409591.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr10_-_14614311_14614382	0.0595463	SOX3_SOX2	ENST00000479731.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000468492.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr15_-_44487408_44487476	0.0595083	SOX3_SOX2	ENST00000402883.1|FRMD5|ENSG00000171877.15|FERM domain containing 5 	ENST00000417257.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr19_-_49865639_49865718	0.0594379	SOX3_SOX2	ENST00000593945.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000601519.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000539846.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000596757.1|TEAD2|ENSG00000074219.9|TEA domain family member 2 	ENST00000311227.2|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr15_-_73075964_73075980	0.059321	SOX3_SOX2	ENST00000563907.1|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr2_-_75796837_75796849	0.0591815	SOX3_SOX2	ENST00000233712.1|EVA1A|ENSG00000115363.9|eva-1 homolog A (C. elegans)
hg19_v2_chr1_-_3447967_3448012	0.0590729	SOX3_SOX2	ENST00000294599.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr12_+_21168630_21168630	0.0588892	SOX3_SOX2	ENST00000421593.2|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr1_-_46598284_46598356	0.0588603	SOX3_SOX2	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr21_+_43442100_43442192	0.0586351	SOX3_SOX2	ENST00000455701.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1 	ENST00000596595.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1
hg19_v2_chr1_-_78149041_78149142	0.0584635	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr21_-_27423339_27423352	0.0582989	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chrX_-_80457385_80457441	0.0582545	SOX3_SOX2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr1_-_235814048_235814067	0.0581965	SOX3_SOX2	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr15_-_64995399_64995480	0.058122	SOX3_SOX2	ENST00000559753.1|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000560258.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000559912.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000326005.6|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2
hg19_v2_chr20_-_56285595_56285656	0.0579494	SOX3_SOX2	ENST00000395816.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000347215.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chrX_-_134049233_134049258	0.0577589	SOX3_SOX2	ENST00000370779.4|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr9_+_103189458_103189504	0.0574657	SOX3_SOX2	ENST00000398977.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr20_-_4795747_4795769	0.0574587	SOX3_SOX2	ENST00000379376.2|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr4_-_80994471_80994485	0.0574266	SOX3_SOX2	ENST00000295465.4|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr1_+_39571026_39571117	0.0572858	SOX3_SOX2	ENST00000524432.1|MACF1|ENSG00000127603.19|microtubule-actin crosslinking factor 1
hg19_v2_chr14_-_82089405_82089428	0.057227	SOX3_SOX2	ENST00000554211.1|RP11-799P8.1|ENSG00000258977.1|RP11-799P8.1
hg19_v2_chr17_-_17184546_17184569	0.0569282	SOX3_SOX2	ENST00000417352.1|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr6_-_31632962_31632997	0.056924	SOX3_SOX2	ENST00000456540.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1 	ENST00000445768.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1
hg19_v2_chr6_+_53794780_53794844	0.0564609	SOX3_SOX2	ENST00000505762.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000511369.1|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1	ENST00000431554.2|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1
hg19_v2_chr17_-_76719807_76719832	0.0563304	SOX3_SOX2	ENST00000589297.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr2_+_102314161_102314206	0.0562471	SOX3_SOX2	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr17_-_61777090_61777221	0.0561692	SOX3_SOX2	ENST00000578061.1|LIMD2|ENSG00000136490.4|LIM domain containing 2
hg19_v2_chr17_-_15469590_15469590	0.0561602	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr19_-_17375541_17375605	0.0561591	SOX3_SOX2	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr15_-_59665062_59665099	0.056035	SOX3_SOX2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr5_-_58882219_58882337	0.0560016	SOX3_SOX2	ENST00000505453.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000360047.5|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr17_-_42906965_42907062	0.0558113	SOX3_SOX2	ENST00000586267.1|GJC1|ENSG00000182963.5|gap junction protein, gamma 1, 45kDa
hg19_v2_chr20_+_3869562_3869581	0.0557941	SOX3_SOX2	ENST00000495692.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr20_+_60718785_60718853	0.0556908	SOX3_SOX2	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr6_-_75915757_75915775	0.0555933	SOX3_SOX2	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr5_+_102201430_102201478	0.055477	SOX3_SOX2	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr14_-_50999190_50999225	0.0554711	SOX3_SOX2	ENST00000557390.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr18_+_72201829_72201845	0.0552485	SOX3_SOX2	ENST00000582365.1|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
hg19_v2_chr13_-_31736478_31736525	0.0551417	SOX3_SOX2	ENST00000445273.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr1_+_235491714_235491895	0.0550342	SOX3_SOX2	ENST00000471812.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000358966.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000282841.5|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000391855.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr2_-_158182105_158182171	0.0550045	SOX3_SOX2	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr1_-_31712401_31712401	0.0547732	SOX3_SOX2	ENST00000373736.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr17_-_74639886_74639920	0.0547361	SOX3_SOX2	ENST00000156626.7|ST6GALNAC1|ENSG00000070526.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
hg19_v2_chr14_+_54976603_54976676	0.0546141	SOX3_SOX2	ENST00000557317.1|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr8_-_29939933_29939949	0.0545986	SOX3_SOX2	ENST00000522794.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr1_-_231004738_231004754	0.0544469	SOX3_SOX2	ENST00000522201.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr1_-_3528034_3528077	0.0544209	SOX3_SOX2	ENST00000356575.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr17_+_25621102_25621157	0.05435	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr12_+_25055243_25055243	0.0543227	SOX3_SOX2	ENST00000599478.1|AC026310.1|ENSG00000268865.1|Protein 101060047
hg19_v2_chr17_-_39677971_39678038	0.0542841	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr3_+_141043050_141043063	0.054251	SOX3_SOX2	ENST00000509842.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr2_-_153573887_153573930	0.0541832	SOX3_SOX2	ENST00000493468.2|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 	ENST00000545856.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr17_+_72428266_72428277	0.054158	SOX3_SOX2	ENST00000582473.1|GPRC5C|ENSG00000170412.12|G protein-coupled receptor, family C, group 5, member C
hg19_v2_chr8_-_48651648_48651648	0.0541283	SOX3_SOX2	ENST00000408965.3|CEBPD|ENSG00000221869.4|CCAAT/enhancer binding protein (C/EBP), delta
hg19_v2_chr1_+_162351503_162351523	0.0539454	SOX3_SOX2	ENST00000458626.2|C1orf226|ENSG00000239887.3|chromosome 1 open reading frame 226
hg19_v2_chr4_+_113152978_113152989	0.05394	SOX3_SOX2	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr4_+_141677577_141677682	0.0539262	SOX3_SOX2	ENST00000609937.1|RP11-102N12.3|ENSG00000273472.1|RP11-102N12.3
hg19_v2_chr3_+_127317705_127317705	0.05389	SOX3_SOX2	ENST00000480910.1|MCM2|ENSG00000073111.9|minichromosome maintenance complex component 2
hg19_v2_chr20_-_1165319_1165319	0.0536145	SOX3_SOX2	ENST00000429036.1|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr19_-_23578220_23578362	0.053594	SOX3_SOX2	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr6_+_89790490_89790506	0.05346	SOX3_SOX2	ENST00000336032.3|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr18_-_74844713_74844725	0.0534378	SOX3_SOX2	ENST00000397860.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr8_+_94929969_94929980	0.0533759	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr3_+_19988566_19988648	0.0531919	SOX3_SOX2	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chrX_+_135579670_135579715	0.0531335	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr8_-_125827922_125827927	0.0530564	SOX3_SOX2	ENST00000533516.1|RP11-1082L8.4|ENSG00000255491.1|RP11-1082L8.4
hg19_v2_chr9_-_86322516_86322632	0.052888	SOX3_SOX2	ENST00000529923.1|UBQLN1|ENSG00000135018.9|ubiquilin 1
hg19_v2_chr15_-_50647274_50647336	0.0528776	SOX3_SOX2	ENST00000543881.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr4_+_41614909_41614926	0.0526494	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr2_-_20550382_20550413	0.0526266	SOX3_SOX2	ENST00000536417.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr2_-_178128528_178128574	0.0526125	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr8_-_22014339_22014345	0.0526098	SOX3_SOX2	ENST00000306317.2|LGI3|ENSG00000168481.4|leucine-rich repeat LGI family, member 3
hg19_v2_chr1_-_93645818_93645918	0.0525961	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chrX_-_140786896_140786896	0.0525867	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr8_+_104384616_104384661	0.0524392	SOX3_SOX2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr8_-_33424636_33424653	0.0523534	SOX3_SOX2	ENST00000256257.1|RNF122|ENSG00000133874.1|ring finger protein 122
hg19_v2_chr7_-_111846435_111846471	0.0522282	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr6_-_32811771_32811831	0.052104	SOX3_SOX2	ENST00000395339.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8 	ENST00000374882.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8
hg19_v2_chr1_-_68698222_68698266	0.0520846	SOX3_SOX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr17_-_76713100_76713122	0.0520011	SOX3_SOX2	ENST00000585509.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr2_+_66662510_66662532	0.0520001	SOX3_SOX2	ENST00000272369.9|MEIS1|ENSG00000143995.15|Meis homeobox 1 	ENST00000407092.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr9_-_127905736_127905815	0.0519789	SOX3_SOX2	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr11_+_67007518_67007533	0.0519528	SOX3_SOX2	ENST00000530342.1|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A 	ENST00000308783.5|KDM2A|ENSG00000173120.10|lysine (K)-specific demethylase 2A
hg19_v2_chr5_-_39425290_39425336	0.0519344	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr5_-_38595498_38595514	0.0518569	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr12_+_109577202_109577289	0.0516373	SOX3_SOX2	ENST00000377848.3|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta 	ENST00000377854.5|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta
hg19_v2_chr3_-_165555200_165555260	0.0516367	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chrX_+_69642881_69642991	0.0516275	SOX3_SOX2	ENST00000453994.2|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000536730.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000538649.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000374382.3|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2
hg19_v2_chr8_+_126442563_126442624	0.051569	SOX3_SOX2	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chrX_+_69488174_69488202	0.0515688	SOX3_SOX2	ENST00000480877.2|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin) 	ENST00000307959.8|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr9_-_140142222_140142229	0.0515098	SOX3_SOX2	ENST00000344774.4|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A 	ENST00000388932.2|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr12_+_22778116_22778139	0.0514966	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr2_+_114647504_114647557	0.0514786	SOX3_SOX2	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr8_+_12803176_12803195	0.0512231	SOX3_SOX2	ENST00000524591.2|KIAA1456|ENSG00000250305.4|KIAA1456
hg19_v2_chr15_-_73076030_73076126	0.0512012	SOX3_SOX2	ENST00000311669.8|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr22_-_32022280_32022297	0.05119	SOX3_SOX2	ENST00000442379.1|PISD|ENSG00000241878.5|phosphatidylserine decarboxylase
hg19_v2_chr14_-_73493784_73493822	0.0511821	SOX3_SOX2	ENST00000553891.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chrX_+_114827851_114827872	0.0511713	SOX3_SOX2	ENST00000539310.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr1_-_158173659_158173674	0.0511574	SOX3_SOX2	ENST00000415019.1|RP11-404O13.5|ENSG00000176320.2|RP11-404O13.5
hg19_v2_chr2_+_208576259_208576278	0.0511543	SOX3_SOX2	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr17_+_68101117_68101162	0.0511173	SOX3_SOX2	ENST00000587698.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000587892.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr10_-_14646388_14646417	0.0510823	SOX3_SOX2	ENST00000468747.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378467.4|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr4_+_160188889_160188968	0.0508976	SOX3_SOX2	ENST00000264431.4|RAPGEF2|ENSG00000109756.4|Rap guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr12_-_120805872_120805897	0.0508144	SOX3_SOX2	ENST00000546985.1|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr15_+_78730531_78730612	0.0506078	SOX3_SOX2	ENST00000258886.8|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr2_+_202937972_202937988	0.0506057	SOX3_SOX2	ENST00000541917.1|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012  	ENST00000295844.3|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012
hg19_v2_chr4_+_71570430_71570536	0.0505264	SOX3_SOX2	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr1_+_24118452_24118482	0.050394	SOX3_SOX2	ENST00000421070.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr8_+_59323823_59323947	0.0503263	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr7_-_128415844_128415849	0.0503039	SOX3_SOX2	ENST00000249389.2|OPN1SW|ENSG00000128617.2|opsin 1 (cone pigments), short-wave-sensitive
hg19_v2_chr15_+_57210961_57211030	0.0502934	SOX3_SOX2	ENST00000557843.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr3_+_145782358_145782358	0.050293	SOX3_SOX2	ENST00000422482.1|AC107021.1|ENSG00000232013.1|HCG1786590; PRO2533; Uncharacterized protein
hg19_v2_chrX_-_10645724_10645735	0.0502299	SOX3_SOX2	ENST00000413894.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr9_+_107526443_107526477	0.0500351	SOX3_SOX2	ENST00000374762.3|NIPSNAP3B|ENSG00000165028.7|nipsnap homolog 3B (C. elegans)
hg19_v2_chr3_+_39509163_39509180	0.0499279	SOX3_SOX2	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr18_+_13726645_13726768	0.0498618	SOX3_SOX2	ENST00000543302.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000383314.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000535051.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000592764.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000591746.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase
hg19_v2_chr20_+_21283941_21284007	0.0496521	SOX3_SOX2	ENST00000377191.3|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2 	ENST00000430571.2|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr11_-_89224638_89224653	0.0496025	SOX3_SOX2	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr6_-_109776901_109776994	0.0495251	SOX3_SOX2	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr5_+_15500280_15500312	0.0494536	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr2_+_30455016_30455055	0.0494222	SOX3_SOX2	ENST00000401506.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000407930.2|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr1_+_204494618_204494676	0.0494111	SOX3_SOX2	ENST00000367180.1|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse) 	ENST00000391947.2|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse)
hg19_v2_chr4_-_77996032_77996068	0.0493492	SOX3_SOX2	ENST00000505609.1|CCNI|ENSG00000118816.5|cyclin I
hg19_v2_chr17_+_57297807_57297923	0.0492722	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr1_-_202858227_202858283	0.0492507	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chr6_+_100054606_100054606	0.0490948	SOX3_SOX2	ENST00000369215.4|PRDM13|ENSG00000112238.11|PR domain containing 13
hg19_v2_chr2_+_25264933_25264999	0.0490832	SOX3_SOX2	ENST00000401432.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae) 	ENST00000403714.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae)
hg19_v2_chr9_+_82187630_82187722	0.0490707	SOX3_SOX2	ENST00000265284.6|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr1_-_41487383_41487402	0.0490053	SOX3_SOX2	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr17_+_9728828_9728868	0.0488999	SOX3_SOX2	ENST00000262441.5|GLP2R|ENSG00000065325.8|glucagon-like peptide 2 receptor
hg19_v2_chr3_-_48541537_48541621	0.0488968	SOX3_SOX2	ENST00000443308.2|SHISA5|ENSG00000164054.11|shisa family member 5 	ENST00000417841.1|SHISA5|ENSG00000164054.11|shisa family member 5
hg19_v2_chr13_+_76334567_76334582	0.048771	SOX3_SOX2	ENST00000321797.8|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr9_+_82187487_82187557	0.0487355	SOX3_SOX2	ENST00000435650.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000414465.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376537.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376534.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr1_-_6546001_6546019	0.0485877	SOX3_SOX2	ENST00000400913.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr3_+_182983090_182983115	0.0484245	SOX3_SOX2	ENST00000465010.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr2_+_157330081_157330104	0.0482674	SOX3_SOX2	ENST00000409674.1|GPD2|ENSG00000115159.11|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
hg19_v2_chr2_+_17721920_17721933	0.0482139	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr6_-_27440837_27440912	0.048186	SOX3_SOX2	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr18_+_63273310_63273326	0.0481682	SOX3_SOX2	ENST00000579862.1|RP11-775G23.1|ENSG00000265217.1|RP11-775G23.1
hg19_v2_chr1_+_200842083_200842116	0.0481506	SOX3_SOX2	ENST00000304244.2|GPR25|ENSG00000170128.2|G protein-coupled receptor 25
hg19_v2_chrX_+_15518923_15518952	0.0481364	SOX3_SOX2	ENST00000348343.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr19_+_11466062_11466159	0.0481175	SOX3_SOX2	ENST00000251473.5|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000591329.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000586380.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr12_-_129308487_129308588	0.0480946	SOX3_SOX2	ENST00000266771.5|SLC15A4|ENSG00000139370.6|solute carrier family 15 (oligopeptide transporter), member 4
hg19_v2_chr5_-_168006324_168006400	0.0479928	SOX3_SOX2	ENST00000522176.1|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr2_+_201676908_201677120	0.0479592	SOX3_SOX2	ENST00000409226.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000452790.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr3_+_152879985_152880038	0.0479268	SOX3_SOX2	ENST00000323534.2|RAP2B|ENSG00000181467.2|RAP2B, member of RAS oncogene family
hg19_v2_chr10_+_102759545_102759610	0.0478766	SOX3_SOX2	ENST00000454422.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr2_+_46926326_46926452	0.0477845	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr17_+_40985407_40985513	0.0476297	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr4_-_22444733_22444767	0.0475516	SOX3_SOX2	ENST00000508133.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr1_+_66797687_66797884	0.0475341	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr5_-_39425222_39425283	0.0475107	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr3_-_197024394_197024740	0.0474701	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr19_+_52772832_52772861	0.0474381	SOX3_SOX2	ENST00000593703.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000601711.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000599581.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr5_+_150816595_150816647	0.0472226	SOX3_SOX2	ENST00000520111.1|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1 	ENST00000520701.1|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1 	ENST00000429484.2|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1
hg19_v2_chr2_+_70121075_70121102	0.0470114	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chrX_-_140673133_140673133	0.0469231	SOX3_SOX2	ENST00000370519.3|SPANXA1|ENSG00000198021.5|sperm protein associated with the nucleus, X-linked, family member A1
hg19_v2_chrX_+_55744228_55744318	0.0468216	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr11_+_196738_196779	0.0467904	SOX3_SOX2	ENST00000325113.4|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3 	ENST00000342593.5|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3
hg19_v2_chr4_-_88141615_88141751	0.0466253	SOX3_SOX2	ENST00000545252.1|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000425278.2|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000498875.2|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr1_+_166808692_166808774	0.046589	SOX3_SOX2	ENST00000367876.4|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr14_-_103589246_103589397	0.0465425	SOX3_SOX2	ENST00000558224.1|LINC00677|ENSG00000259717.1|long intergenic non-protein coding RNA 677 	ENST00000560742.1|LINC00677|ENSG00000259717.1|long intergenic non-protein coding RNA 677
hg19_v2_chr8_-_70745575_70745625	0.0464265	SOX3_SOX2	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr10_-_33246722_33246830	0.0463622	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr22_+_27068766_27068819	0.0461625	SOX3_SOX2	ENST00000435162.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000437071.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000440816.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000421253.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr3_+_119814070_119814134	0.046061	SOX3_SOX2	ENST00000469070.1|RP11-18H7.1|ENSG00000242622.1|RP11-18H7.1
hg19_v2_chr19_-_19051927_19051934	0.0460495	SOX3_SOX2	ENST00000600077.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr16_+_70258261_70258261	0.045954	SOX3_SOX2	ENST00000594734.1|FKSG63|ENSG00000269866.1|FKSG63
hg19_v2_chr4_+_128702969_128702984	0.045931	SOX3_SOX2	ENST00000508776.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000439123.2|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr5_+_76011868_76012005	0.0459161	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr10_-_128975273_128975273	0.0457498	SOX3_SOX2	ENST00000424811.2|FAM196A|ENSG00000188916.4|family with sequence similarity 196, member A
hg19_v2_chr8_+_144718171_144718332	0.0456651	SOX3_SOX2	ENST00000526926.1|ZNF623|ENSG00000183309.7|zinc finger protein 623 	ENST00000458270.2|ZNF623|ENSG00000183309.7|zinc finger protein 623
hg19_v2_chr16_+_14396121_14396145	0.0455485	SOX3_SOX2	ENST00000570945.1|RP11-65J21.3|ENSG00000262454.1|RP11-65J21.3
hg19_v2_chr6_+_46620705_46620732	0.0455291	SOX3_SOX2	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr6_-_31619742_31619778	0.0455269	SOX3_SOX2	ENST00000433828.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456286.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chrX_+_107068959_107068985	0.0453986	SOX3_SOX2	ENST00000451923.1|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr1_-_153643442_153643524	0.0452998	SOX3_SOX2	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr4_-_99578789_99578843	0.0452859	SOX3_SOX2	ENST00000511651.1|TSPAN5|ENSG00000168785.3|tetraspanin 5 	ENST00000505184.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr7_-_8302207_8302242	0.0452633	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr6_-_27440460_27440505	0.0452035	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr2_+_169923504_169923545	0.045182	SOX3_SOX2	ENST00000357546.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr1_+_144339738_144339738	0.0451528	SOX3_SOX2	ENST00000538264.1|AL592284.1|ENSG00000231360.2|Protein LOC642441
hg19_v2_chr13_+_76362974_76363015	0.045146	SOX3_SOX2	ENST00000497947.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr6_+_56954919_56955005	0.0451188	SOX3_SOX2	ENST00000508603.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000491832.2|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370710.6|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr1_-_21503337_21503407	0.0450201	SOX3_SOX2	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr2_-_178128250_178128300	0.0448571	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr10_-_14614122_14614188	0.0447601	SOX3_SOX2	ENST00000378465.3|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000452706.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378458.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr21_+_33784670_33784696	0.0447141	SOX3_SOX2	ENST00000300255.2|EVA1C|ENSG00000166979.8|eva-1 homolog C (C. elegans)
hg19_v2_chr14_-_25519095_25519280	0.0446619	SOX3_SOX2	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr13_+_103451548_103451561	0.0444718	SOX3_SOX2	ENST00000419638.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr20_+_58713514_58713554	0.0444105	SOX3_SOX2	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chr3_-_27763803_27763822	0.0443662	SOX3_SOX2	ENST00000449599.1|EOMES|ENSG00000163508.8|eomesodermin
hg19_v2_chr1_-_68698197_68698214	0.0443612	SOX3_SOX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr5_-_111093759_111093915	0.0443314	SOX3_SOX2	ENST00000509979.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000513100.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000508161.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000455559.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr1_-_235491462_235491534	0.0442983	SOX3_SOX2	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr17_+_79031415_79031560	0.0442861	SOX3_SOX2	ENST00000572073.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2 	ENST00000573677.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2
hg19_v2_chr15_+_57540230_57540239	0.0441703	SOX3_SOX2	ENST00000559703.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr1_+_152178320_152178334	0.0441615	SOX3_SOX2	ENST00000429352.1|RP11-107M16.2|ENSG00000236427.1|RP11-107M16.2
hg19_v2_chr5_+_14143728_14143829	0.0438515	SOX3_SOX2	ENST00000344204.4|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor 	ENST00000537187.1|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor
hg19_v2_chr9_-_115249484_115249484	0.0437848	SOX3_SOX2	ENST00000457681.1|C9orf147|ENSG00000230185.4|chromosome 9 open reading frame 147
hg19_v2_chr18_+_3252265_3252284	0.0437838	SOX3_SOX2	ENST00000580887.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000536605.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr20_-_5485166_5485259	0.0437659	SOX3_SOX2	ENST00000589201.1|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654 	ENST00000379053.4|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654
hg19_v2_chr10_-_104953009_104953061	0.0437477	SOX3_SOX2	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr2_+_169312725_169312810	0.0437352	SOX3_SOX2	ENST00000392687.4|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr9_-_86595105_86595184	0.0437096	SOX3_SOX2	ENST00000457156.1|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000360384.5|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376263.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr4_+_81118647_81118666	0.0436694	SOX3_SOX2	ENST00000415738.2|PRDM8|ENSG00000152784.11|PR domain containing 8
hg19_v2_chr11_-_70672645_70672711	0.0435728	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr2_-_153573965_153573982	0.043464	SOX3_SOX2	ENST00000448428.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr13_+_26828275_26828312	0.0434506	SOX3_SOX2	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr4_-_175204765_175204843	0.0433711	SOX3_SOX2	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr6_-_47277634_47277651	0.0433566	SOX3_SOX2	ENST00000296861.2|TNFRSF21|ENSG00000146072.6|tumor necrosis factor receptor superfamily, member 21
hg19_v2_chr3_-_124839648_124839709	0.0432422	SOX3_SOX2	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr5_-_39425068_39425098	0.0432287	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr2_-_178128199_178128245	0.0431856	SOX3_SOX2	ENST00000449627.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr9_+_124103625_124103625	0.0431422	SOX3_SOX2	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr4_+_41540160_41540196	0.0431084	SOX3_SOX2	ENST00000503057.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000511496.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr1_-_84326229_84326241	0.0430715	SOX3_SOX2	ENST00000457273.1|RP11-475O6.1|ENSG00000233008.1|RP11-475O6.1
hg19_v2_chr3_-_142682178_142682178	0.0429124	SOX3_SOX2	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr9_+_36036430_36036430	0.0427346	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr22_-_22292934_22292967	0.0426967	SOX3_SOX2	ENST00000538191.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000424647.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000407142.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F
hg19_v2_chr2_-_151344172_151344243	0.0426761	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr3_-_69101413_69101457	0.0426648	SOX3_SOX2	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr16_+_57653625_57653669	0.042438	SOX3_SOX2	ENST00000567553.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000565314.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr1_+_11539204_11539295	0.042393	SOX3_SOX2	ENST00000294484.6|PTCHD2|ENSG00000204624.6|patched domain containing 2 	ENST00000389575.3|PTCHD2|ENSG00000204624.6|patched domain containing 2
hg19_v2_chr6_-_42419649_42419789	0.0423748	SOX3_SOX2	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr1_+_28696111_28696130	0.0421994	SOX3_SOX2	ENST00000373839.3|PHACTR4|ENSG00000204138.8|phosphatase and actin regulator 4
hg19_v2_chr12_-_114211444_114211468	0.0421946	SOX3_SOX2	ENST00000510694.2|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000550223.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr10_+_97803151_97803348	0.0419129	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr1_+_16085263_16085314	0.0417999	SOX3_SOX2	ENST00000483633.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000502739.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000431771.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr14_+_96968802_96968895	0.041651	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr6_+_106535455_106535637	0.0416491	SOX3_SOX2	ENST00000424894.1|PRDM1|ENSG00000057657.10|PR domain containing 1, with ZNF domain
hg19_v2_chr3_+_155588375_155588512	0.0415434	SOX3_SOX2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr19_-_44143939_44144010	0.0415294	SOX3_SOX2	ENST00000222374.2|CADM4|ENSG00000105767.2|cell adhesion molecule 4
hg19_v2_chr11_-_102323740_102323780	0.0414736	SOX3_SOX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr22_-_31688431_31688520	0.0414358	SOX3_SOX2	ENST00000402249.3|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000443175.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000215912.5|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000441972.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr11_+_65265141_65265306	0.0414147	SOX3_SOX2	ENST00000534336.1|MALAT1|ENSG00000251562.3|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
hg19_v2_chr5_-_147211190_147211219	0.0413368	SOX3_SOX2	ENST00000510027.2|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr14_-_71107921_71108085	0.0413214	SOX3_SOX2	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr4_+_156680153_156680242	0.0412912	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr3_-_57583130_57583152	0.0411963	SOX3_SOX2	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr20_+_34042962_34043028	0.0411395	SOX3_SOX2	ENST00000446710.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa 	ENST00000420564.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa
hg19_v2_chr1_+_955448_955508	0.0410959	SOX3_SOX2	ENST00000379370.2|AGRN|ENSG00000188157.9|agrin
hg19_v2_chr10_-_25012115_25012174	0.0409657	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr17_-_49198095_49198119	0.0409208	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr20_-_45530365_45530392	0.0408188	SOX3_SOX2	ENST00000414085.1|RP11-323C15.2|ENSG00000236028.1|RP11-323C15.2
hg19_v2_chr18_+_3447572_3447607	0.040818	SOX3_SOX2	ENST00000548489.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr7_+_150076406_150076456	0.0407886	SOX3_SOX2	ENST00000329630.5|ZNF775|ENSG00000196456.4|zinc finger protein 775
hg19_v2_chr7_+_73106926_73106980	0.0407236	SOX3_SOX2	ENST00000453316.1|WBSCR22|ENSG00000071462.7|Williams Beuren syndrome chromosome region 22
hg19_v2_chr12_-_12674032_12674059	0.0407182	SOX3_SOX2	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr12_-_76817036_76817070	0.0407177	SOX3_SOX2	ENST00000546946.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr11_-_111649074_111649123	0.0406966	SOX3_SOX2	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr10_+_24755416_24755470	0.0406736	SOX3_SOX2	ENST00000396446.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000396445.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376451.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr11_+_93861993_93862102	0.0406421	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr19_+_8455200_8455301	0.0405634	SOX3_SOX2	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr6_-_161695042_161695064	0.0405443	SOX3_SOX2	ENST00000366908.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366911.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366905.3|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr20_+_49126881_49126936	0.0404467	SOX3_SOX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr2_-_208031943_208031991	0.0403836	SOX3_SOX2	ENST00000421199.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous) 	ENST00000457962.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr17_-_76719638_76719657	0.0402809	SOX3_SOX2	ENST00000587308.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr11_-_95522639_95522725	0.0402716	SOX3_SOX2	ENST00000536839.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr19_+_13228917_13229048	0.040223	SOX3_SOX2	ENST00000586171.1|NACC1|ENSG00000160877.5|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
hg19_v2_chr2_+_47168313_47168425	0.0401804	SOX3_SOX2	ENST00000319190.5|TTC7A|ENSG00000068724.11|tetratricopeptide repeat domain 7A 	ENST00000394850.2|TTC7A|ENSG00000068724.11|tetratricopeptide repeat domain 7A 	ENST00000536057.1|TTC7A|ENSG00000068724.11|tetratricopeptide repeat domain 7A
hg19_v2_chr7_-_151511911_151511962	0.0401253	SOX3_SOX2	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr1_+_66999268_66999313	0.0401144	SOX3_SOX2	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr11_-_46142505_46142565	0.0400958	SOX3_SOX2	ENST00000524497.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000418153.2|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr20_-_3996036_3996153	0.0400194	SOX3_SOX2	ENST00000336095.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr3_+_9834758_9834801	0.0400089	SOX3_SOX2	ENST00000485273.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa 	ENST00000397256.1|ARPC4-TTLL3|ENSG00000250151.5|ARPC4-TTLL3 readthrough 	ENST00000433034.1|ARPC4|ENSG00000241553.8|actin related protein 2/3 complex, subunit 4, 20kDa
hg19_v2_chr20_+_20348740_20348765	0.0399656	SOX3_SOX2	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chr3_-_19988462_19988501	0.0399368	SOX3_SOX2	ENST00000344838.4|EFHB|ENSG00000163576.13|EF-hand domain family, member B
hg19_v2_chr11_+_17316870_17316897	0.0398624	SOX3_SOX2	ENST00000458064.2|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr20_-_45985464_45985567	0.0397442	SOX3_SOX2	ENST00000458360.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000262975.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr17_-_73389854_73390114	0.0397038	SOX3_SOX2	ENST00000578961.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2 	ENST00000392564.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2 	ENST00000582582.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2
hg19_v2_chr19_-_36705547_36705597	0.0396877	SOX3_SOX2	ENST00000304116.5|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr18_-_61329118_61329197	0.0395971	SOX3_SOX2	ENST00000332821.8|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3 	ENST00000283752.5|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3
hg19_v2_chr16_+_3254247_3254247	0.03957	SOX3_SOX2	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chr12_+_104680659_104680777	0.0395602	SOX3_SOX2	ENST00000526691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000388854.3|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000354940.6|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526390.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531689.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr10_-_30024716_30024739	0.0395469	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr3_-_138312971_138313132	0.0394137	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr1_+_25071848_25071944	0.0391302	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr13_-_99667960_99668068	0.0391139	SOX3_SOX2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr20_+_21284416_21284490	0.0391116	SOX3_SOX2	ENST00000539513.1|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr14_+_95078714_95078739	0.0391101	SOX3_SOX2	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr2_-_39348137_39348212	0.0390844	SOX3_SOX2	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr1_+_149239529_149239531	0.0390821	SOX3_SOX2	ENST00000457216.2|RP11-403I13.4|ENSG00000223779.4|RP11-403I13.4
hg19_v2_chr2_+_210444748_210444770	0.0390713	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr4_+_24661479_24661534	0.0390623	SOX3_SOX2	ENST00000569621.1|RP11-496D24.2|ENSG00000261121.1|RP11-496D24.2
hg19_v2_chr2_-_17981462_17981584	0.0389471	SOX3_SOX2	ENST00000402989.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000428868.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr7_-_127672146_127672170	0.0389205	SOX3_SOX2	ENST00000476782.1|LRRC4|ENSG00000128594.3|leucine rich repeat containing 4
hg19_v2_chr20_+_42086525_42086568	0.0388145	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr19_+_58694742_58694863	0.0387777	SOX3_SOX2	ENST00000597528.1|ZNF274|ENSG00000171606.13|zinc finger protein 274 	ENST00000594839.1|ZNF274|ENSG00000171606.13|zinc finger protein 274
hg19_v2_chr2_+_201677390_201677411	0.0386743	SOX3_SOX2	ENST00000447069.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr12_-_10282742_10282817	0.0385948	SOX3_SOX2	ENST00000298523.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000396484.2|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000310002.4|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr11_+_7273181_7273223	0.0385811	SOX3_SOX2	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr3_-_88108212_88108223	0.0385559	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr12_+_50144381_50144455	0.0384166	SOX3_SOX2	ENST00000552370.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr19_-_47249679_47249737	0.0384102	SOX3_SOX2	ENST00000263280.6|STRN4|ENSG00000090372.10|striatin, calmodulin binding protein 4
hg19_v2_chr3_+_112930387_112930431	0.0383343	SOX3_SOX2	ENST00000485230.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr12_-_10282836_10282863	0.0383244	SOX3_SOX2	ENST00000304084.8|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000353231.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000525605.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr16_-_25026641_25026698	0.0383087	SOX3_SOX2	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr17_-_9940058_9940074	0.0380394	SOX3_SOX2	ENST00000585266.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr1_+_47881744_47881744	0.0380083	SOX3_SOX2	ENST00000335071.2|FOXE3|ENSG00000186790.4|forkhead box E3
hg19_v2_chr5_+_138678131_138678169	0.037905	SOX3_SOX2	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr11_-_85430088_85430151	0.0378821	SOX3_SOX2	ENST00000533057.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533892.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr6_-_24877490_24877583	0.0378535	SOX3_SOX2	ENST00000540914.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B 	ENST00000378023.4|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr2_-_171571077_171571077	0.0378218	SOX3_SOX2	ENST00000409786.1|AC007405.2|ENSG00000222033.1|long intergenic non-protein coding RNA 1124
hg19_v2_chrX_-_19689106_19689129	0.0378153	SOX3_SOX2	ENST00000379716.1|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr4_-_121993673_121993698	0.0378095	SOX3_SOX2	ENST00000379692.4|NDNF|ENSG00000173376.9|neuron-derived neurotrophic factor
hg19_v2_chr1_-_43424500_43424546	0.0377696	SOX3_SOX2	ENST00000415851.2|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000426263.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000372500.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1
hg19_v2_chr15_+_34310428_34310428	0.0377569	SOX3_SOX2	ENST00000557872.1|CHRM5|ENSG00000184984.8|cholinergic receptor, muscarinic 5
hg19_v2_chr6_+_134274322_134274342	0.0377482	SOX3_SOX2	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr5_+_72112470_72112533	0.037694	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr11_+_63137251_63137280	0.0376884	SOX3_SOX2	ENST00000310969.4|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9 	ENST00000279178.3|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9
hg19_v2_chr1_-_3566590_3566622	0.037674	SOX3_SOX2	ENST00000424367.1|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000378322.3|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr19_-_8408139_8408153	0.0376345	SOX3_SOX2	ENST00000330915.3|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000593649.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000595639.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3
hg19_v2_chr14_-_21516590_21516692	0.0375331	SOX3_SOX2	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr17_+_19186292_19186414	0.0374832	SOX3_SOX2	ENST00000395626.1|EPN2|ENSG00000072134.11|epsin 2 	ENST00000571254.1|EPN2|ENSG00000072134.11|epsin 2
hg19_v2_chr4_-_169239921_169239972	0.0374711	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr20_-_1165117_1165117	0.0374683	SOX3_SOX2	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr1_-_113160826_113160844	0.0374661	SOX3_SOX2	ENST00000538187.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369664.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chrX_-_132095419_132095426	0.037463	SOX3_SOX2	ENST00000370836.2|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2 	ENST00000521489.1|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2
hg19_v2_chrX_+_55744166_55744222	0.0374406	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr17_+_34538310_34538544	0.0373375	SOX3_SOX2	ENST00000444414.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000378350.4|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000389068.5|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000588929.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000589079.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000589336.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000400702.4|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000591167.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000586598.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000591637.1|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000378352.4|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1 	ENST00000358756.5|CCL4L1|ENSG00000205020.7|chemokine (C-C motif) ligand 4-like 1
hg19_v2_chr6_-_30640761_30640808	0.0373178	SOX3_SOX2	ENST00000415603.1|DHX16|ENSG00000204560.5|DEAH (Asp-Glu-Ala-His) box polypeptide 16
hg19_v2_chr11_+_35198243_35198260	0.0372408	SOX3_SOX2	ENST00000528455.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr2_+_70142232_70142320	0.0371774	SOX3_SOX2	ENST00000540449.1|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr11_+_46402482_46402502	0.0371505	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr16_+_21608525_21608543	0.0371143	SOX3_SOX2	ENST00000567404.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr8_-_110346614_110346722	0.0368956	SOX3_SOX2	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr4_-_80993717_80993850	0.0368538	SOX3_SOX2	ENST00000307333.7|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr7_-_150780487_150780597	0.0368287	SOX3_SOX2	ENST00000482202.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr12_-_109915098_109915138	0.0367679	SOX3_SOX2	ENST00000542858.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000542262.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000424763.2|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10
hg19_v2_chr10_-_32217717_32217781	0.0366709	SOX3_SOX2	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr12_+_49761273_49761330	0.0364876	SOX3_SOX2	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr11_-_47574664_47574669	0.0364646	SOX3_SOX2	ENST00000310513.5|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1 	ENST00000531165.1|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1
hg19_v2_chr22_+_37447771_37447916	0.0364433	SOX3_SOX2	ENST00000402077.3|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17 	ENST00000403888.3|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17 	ENST00000456470.1|KCTD17|ENSG00000100379.13|potassium channel tetramerization domain containing 17
hg19_v2_chr4_-_175443788_175443795	0.0362541	SOX3_SOX2	ENST00000541923.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr10_-_14614095_14614112	0.0362034	SOX3_SOX2	ENST00000482277.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378462.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr5_-_74062867_74062912	0.03617	SOX3_SOX2	ENST00000509097.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr8_-_8751068_8751158	0.0361646	SOX3_SOX2	ENST00000276282.6|MFHAS1|ENSG00000147324.6|malignant fibrous histiocytoma amplified sequence 1
hg19_v2_chr8_+_124194752_124194835	0.0360594	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr20_+_34679725_34679774	0.0360319	SOX3_SOX2	ENST00000432589.1|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1
hg19_v2_chr22_+_31199037_31199073	0.035956	SOX3_SOX2	ENST00000424224.1|OSBP2|ENSG00000184792.11|oxysterol binding protein 2
hg19_v2_chr2_+_17721937_17721990	0.0359456	SOX3_SOX2	ENST00000451533.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr5_-_179072047_179072047	0.0359389	SOX3_SOX2	ENST00000448248.2|C5orf60|ENSG00000204661.5|chromosome 5 open reading frame 60
hg19_v2_chr7_-_24797032_24797162	0.0359374	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr12_-_122711968_122712008	0.0358469	SOX3_SOX2	ENST00000485724.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr15_-_70994612_70994652	0.0358348	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr17_-_73389737_73389765	0.0357671	SOX3_SOX2	ENST00000392563.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2
hg19_v2_chr14_-_35099315_35099369	0.0357212	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr2_+_58655461_58655492	0.0357003	SOX3_SOX2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr6_-_84937314_84937372	0.0355738	SOX3_SOX2	ENST00000257766.4|KIAA1009|ENSG00000135315.7|KIAA1009 	ENST00000403245.3|KIAA1009|ENSG00000135315.7|KIAA1009
hg19_v2_chr20_-_30433396_30433420	0.0355283	SOX3_SOX2	ENST00000375978.3|FOXS1|ENSG00000179772.6|forkhead box S1
hg19_v2_chr7_+_30960915_30961105	0.0355119	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr15_+_72766651_72766680	0.0354233	SOX3_SOX2	ENST00000379887.4|ARIH1|ENSG00000166233.8|ariadne RBR E3 ubiquitin protein ligase 1
hg19_v2_chr6_-_13328564_13328815	0.0353867	SOX3_SOX2	ENST00000606530.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607658.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000343141.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000356436.4|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379300.3|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000452989.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000450347.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000422136.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000446018.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379291.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000379307.2|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000606370.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7 	ENST00000607230.1|TBC1D7|ENSG00000145979.13|TBC1 domain family, member 7
hg19_v2_chr7_-_107643567_107643657	0.035378	SOX3_SOX2	ENST00000393559.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000439976.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000393560.1|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr5_+_140213815_140213969	0.0353412	SOX3_SOX2	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr7_-_150780609_150780633	0.0353004	SOX3_SOX2	ENST00000297533.4|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr1_+_159141397_159141549	0.0352431	SOX3_SOX2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr3_-_69101461_69101494	0.0352192	SOX3_SOX2	ENST00000543976.1|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr1_+_236305826_236305877	0.0352143	SOX3_SOX2	ENST00000366592.3|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B 	ENST00000366591.4|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B
hg19_v2_chr6_+_123100620_123100763	0.0351453	SOX3_SOX2	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr6_-_31620095_31620135	0.0350715	SOX3_SOX2	ENST00000424176.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456622.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr1_-_235813290_235813323	0.0350576	SOX3_SOX2	ENST00000391854.2|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr1_+_235490659_235490670	0.0349917	SOX3_SOX2	ENST00000488594.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr17_-_73775839_73775868	0.0349722	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr17_-_18950950_18950950	0.034944	SOX3_SOX2	ENST00000284154.5|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr11_+_1889880_1889903	0.0349166	SOX3_SOX2	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr19_+_32836499_32836625	0.0348394	SOX3_SOX2	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr21_-_40685477_40685496	0.0347993	SOX3_SOX2	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr9_-_91793675_91793698	0.0347951	SOX3_SOX2	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr1_+_201592013_201592013	0.0347067	SOX3_SOX2	ENST00000593583.1|AC096677.1|ENSG00000269690.1|Uncharacterized protein ENSP00000471857
hg19_v2_chr15_-_74043816_74043816	0.0347012	SOX3_SOX2	ENST00000379822.4|C15orf59|ENSG00000205363.4|chromosome 15 open reading frame 59
hg19_v2_chr9_-_35072585_35072632	0.0346906	SOX3_SOX2	ENST00000448530.1|VCP|ENSG00000165280.11|valosin containing protein
hg19_v2_chr20_+_35202909_35203075	0.0346153	SOX3_SOX2	ENST00000558530.1|TGIF2-C20orf24|ENSG00000259399.1|TGIF2-C20orf24 readthrough 	ENST00000558028.1|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2 	ENST00000560025.1|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr19_+_37960240_37960299	0.0345853	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr5_+_129083772_129083814	0.0345077	SOX3_SOX2	ENST00000564719.1|KIAA1024L|ENSG00000186367.5|KIAA1024-like
hg19_v2_chr1_+_11751748_11751798	0.0344998	SOX3_SOX2	ENST00000294485.5|DRAXIN|ENSG00000162490.6|dorsal inhibitory axon guidance protein
hg19_v2_chr5_+_138677515_138677581	0.0344402	SOX3_SOX2	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr4_-_75024085_75024085	0.0343995	SOX3_SOX2	ENST00000600169.1|AC093677.1|ENSG00000269559.1|Uncharacterized protein
hg19_v2_chr9_+_82267508_82267551	0.0343753	SOX3_SOX2	ENST00000490347.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr2_-_160472952_160473080	0.0343256	SOX3_SOX2	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr14_+_53019993_53020137	0.0343219	SOX3_SOX2	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr14_-_102976091_102976133	0.0343144	SOX3_SOX2	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr10_-_75410771_75410813	0.0340921	SOX3_SOX2	ENST00000372873.4|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr11_-_85430204_85430271	0.0340051	SOX3_SOX2	ENST00000389958.3|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000527794.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr1_-_6545502_6545548	0.0339287	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr1_-_200379129_200379174	0.033869	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr4_-_10458982_10459007	0.0338548	SOX3_SOX2	ENST00000326756.3|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr7_-_148787768_148787874	0.0338022	SOX3_SOX2	ENST00000491431.1|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000451334.3|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000316286.9|ZNF786|ENSG00000197362.9|zinc finger protein 786
hg19_v2_chr14_-_68159152_68159200	0.0337655	SOX3_SOX2	ENST00000554035.1|RDH11|ENSG00000072042.8|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
hg19_v2_chrX_+_45364633_45364657	0.0337445	SOX3_SOX2	ENST00000435394.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1	ENST00000609127.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1
hg19_v2_chr19_+_11466167_11466180	0.0336542	SOX3_SOX2	ENST00000591608.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr10_-_118429461_118429484	0.0336461	SOX3_SOX2	ENST00000588184.1|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82 	ENST00000369210.3|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82
hg19_v2_chrX_-_47863348_47863412	0.0336249	SOX3_SOX2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr4_+_128554081_128554121	0.0335699	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr12_+_19358192_19358212	0.033451	SOX3_SOX2	ENST00000538305.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr7_-_105029812_105029860	0.0332674	SOX3_SOX2	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr4_-_15656923_15657035	0.0332591	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr2_+_228736321_228736332	0.0331941	SOX3_SOX2	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr8_+_92261516_92261555	0.0331239	SOX3_SOX2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr20_-_3996165_3996245	0.0331122	SOX3_SOX2	ENST00000545616.2|RNF24|ENSG00000101236.12|ring finger protein 24 	ENST00000358395.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr4_-_174320687_174320687	0.0330987	SOX3_SOX2	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr12_+_49212261_49212319	0.0330971	SOX3_SOX2	ENST00000547818.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547392.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr15_+_76629064_76629073	0.0330968	SOX3_SOX2	ENST00000290759.4|ISL2|ENSG00000159556.5|ISL LIM homeobox 2
hg19_v2_chr6_+_35704804_35704813	0.0330729	SOX3_SOX2	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr5_+_130599701_130599716	0.0330642	SOX3_SOX2	ENST00000395246.1|CDC42SE2|ENSG00000158985.9|CDC42 small effector 2
hg19_v2_chrX_-_140336629_140336655	0.0330594	SOX3_SOX2	ENST00000358993.2|SPANXC|ENSG00000198573.6|SPANX family, member C
hg19_v2_chr1_-_154150651_154150691	0.0330008	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr1_-_151032040_151032125	0.0329814	SOX3_SOX2	ENST00000540998.1|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1 	ENST00000357235.5|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1
hg19_v2_chr1_+_65886326_65886406	0.0329634	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr6_-_160210604_160210641	0.0329027	SOX3_SOX2	ENST00000420894.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000539756.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000544255.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr8_+_98656693_98656774	0.0328779	SOX3_SOX2	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr16_+_27078219_27078229	0.0328614	SOX3_SOX2	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr7_+_112262421_112262447	0.0327832	SOX3_SOX2	ENST00000453459.1|AC002463.3|ENSG00000223646.1|AC002463.3
hg19_v2_chr4_+_15683404_15683432	0.0327619	SOX3_SOX2	ENST00000422728.2|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr19_-_21950362_21950430	0.0326578	SOX3_SOX2	ENST00000358296.6|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr9_+_109694914_109694927	0.032643	SOX3_SOX2	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr5_+_140705777_140705844	0.0326156	SOX3_SOX2	ENST00000606901.1|AC005618.6|ENSG00000272070.1|AC005618.6	ENST00000606674.1|AC005618.6|ENSG00000272070.1|AC005618.6
hg19_v2_chr15_-_88799661_88799755	0.0325462	SOX3_SOX2	ENST00000360948.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000357724.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000355254.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000317501.3|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr1_+_202385953_202385994	0.0325227	SOX3_SOX2	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr9_-_132586378_132586433	0.0324565	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr12_-_6233828_6233843	0.0324471	SOX3_SOX2	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr22_+_20104947_20105003	0.0323126	SOX3_SOX2	ENST00000402752.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr2_-_128568721_128568766	0.0322251	SOX3_SOX2	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr7_+_111846741_111846776	0.0322099	SOX3_SOX2	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr17_-_48277552_48277608	0.0321918	SOX3_SOX2	ENST00000507689.1|COL1A1|ENSG00000108821.9|collagen, type I, alpha 1
hg19_v2_chr13_+_36920569_36920569	0.032163	SOX3_SOX2	ENST00000379848.2|SPG20OS|ENSG00000120664.6|SPG20 opposite strand
hg19_v2_chr14_-_22005018_22005040	0.0320876	SOX3_SOX2	ENST00000546363.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr19_-_46476791_46476819	0.0320833	SOX3_SOX2	ENST00000263257.5|NOVA2|ENSG00000104967.6|neuro-oncological ventral antigen 2
hg19_v2_chr12_+_104359641_104359689	0.0319537	SOX3_SOX2	ENST00000537100.1|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr20_-_45985172_45985240	0.0318864	SOX3_SOX2	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr14_-_35099377_35099389	0.0318731	SOX3_SOX2	ENST00000362031.4|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr6_+_87865262_87865339	0.0318349	SOX3_SOX2	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr12_-_8815404_8815438	0.0318083	SOX3_SOX2	ENST00000359478.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000396549.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr6_+_138725343_138725501	0.0317602	SOX3_SOX2	ENST00000607197.1|HEBP2|ENSG00000051620.6|heme binding protein 2 	ENST00000367697.3|HEBP2|ENSG00000051620.6|heme binding protein 2
hg19_v2_chrX_+_107069063_107069123	0.031719	SOX3_SOX2	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr22_-_39151995_39152045	0.031682	SOX3_SOX2	ENST00000405018.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000438058.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr7_+_73245193_73245337	0.0316571	SOX3_SOX2	ENST00000340958.2|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr1_+_109419804_109419878	0.031629	SOX3_SOX2	ENST00000435475.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr9_-_98079965_98080008	0.0316282	SOX3_SOX2	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr8_-_30515693_30515776	0.0316111	SOX3_SOX2	ENST00000355904.4|GTF2E2|ENSG00000197265.4|general transcription factor IIE, polypeptide 2, beta 34kDa
hg19_v2_chr1_-_32384693_32384724	0.0316091	SOX3_SOX2	ENST00000602683.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2 	ENST00000470404.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2
hg19_v2_chr21_-_40685504_40685516	0.0316035	SOX3_SOX2	ENST00000380800.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr6_+_149068464_149068559	0.0315815	SOX3_SOX2	ENST00000367463.4|UST|ENSG00000111962.7|uronyl-2-sulfotransferase
hg19_v2_chr2_-_127963343_127963343	0.031566	SOX3_SOX2	ENST00000335247.7|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr8_-_38325219_38325418	0.0315356	SOX3_SOX2	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr22_-_38713428_38713446	0.0315129	SOX3_SOX2	ENST00000403904.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000405675.3|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr2_-_86422523_86422595	0.0314671	SOX3_SOX2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr11_+_64059464_64059482	0.0313501	SOX3_SOX2	ENST00000394525.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr2_+_201987200_201987270	0.0313389	SOX3_SOX2	ENST00000425030.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr19_+_47105309_47105329	0.0313282	SOX3_SOX2	ENST00000599839.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000596362.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr17_-_39041479_39041501	0.031255	SOX3_SOX2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr9_-_127710292_127710324	0.0311843	SOX3_SOX2	ENST00000421514.1|GOLGA1|ENSG00000136935.9|golgin A1
hg19_v2_chr11_-_102323489_102323576	0.0311731	SOX3_SOX2	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr1_+_32930647_32930684	0.0311706	SOX3_SOX2	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr19_-_9811347_9811452	0.031102	SOX3_SOX2	ENST00000585964.1|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000457674.2|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000590544.1|ZNF812|ENSG00000224689.3|zinc finger protein 812
hg19_v2_chr11_-_46142615_46142729	0.0310735	SOX3_SOX2	ENST00000529734.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000323180.6|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr8_+_124194875_124194921	0.0310238	SOX3_SOX2	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr2_+_181845298_181845378	0.0309684	SOX3_SOX2	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr3_-_138313161_138313198	0.0308948	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr5_+_93954039_93954052	0.0308206	SOX3_SOX2	ENST00000265140.5|ANKRD32|ENSG00000133302.8|ankyrin repeat domain 32
hg19_v2_chr3_-_93747425_93747454	0.0307056	SOX3_SOX2	ENST00000315099.2|STX19|ENSG00000178750.2|syntaxin 19
hg19_v2_chr6_-_90062543_90062567	0.0306959	SOX3_SOX2	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr3_+_112930373_112930384	0.030586	SOX3_SOX2	ENST00000498710.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr7_+_114562909_114563131	0.0305308	SOX3_SOX2	ENST00000423503.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing 	ENST00000427207.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing
hg19_v2_chr11_+_65339820_65340051	0.030413	SOX3_SOX2	ENST00000316409.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000449319.2|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B 	ENST00000530349.1|FAM89B|ENSG00000176973.7|family with sequence similarity 89, member B
hg19_v2_chr2_-_48132814_48132917	0.0303999	SOX3_SOX2	ENST00000316377.4|FBXO11|ENSG00000138081.15|F-box protein 11 	ENST00000378314.3|FBXO11|ENSG00000138081.15|F-box protein 11
hg19_v2_chr22_+_46972975_46973087	0.0303983	SOX3_SOX2	ENST00000431155.1|GRAMD4|ENSG00000075240.12|GRAM domain containing 4
hg19_v2_chr19_+_10713112_10713198	0.0303909	SOX3_SOX2	ENST00000590382.1|SLC44A2|ENSG00000129353.10|solute carrier family 44 (choline transporter), member 2 	ENST00000407327.4|SLC44A2|ENSG00000129353.10|solute carrier family 44 (choline transporter), member 2
hg19_v2_chr3_+_185304059_185304124	0.030352	SOX3_SOX2	ENST00000427465.2|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr6_-_31619697_31619736	0.030338	SOX3_SOX2	ENST00000434444.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr3_-_155011483_155011564	0.0303248	SOX3_SOX2	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr7_-_7575477_7575491	0.0302938	SOX3_SOX2	ENST00000399429.3|COL28A1|ENSG00000215018.5|collagen, type XXVIII, alpha 1
hg19_v2_chr17_+_47074758_47074787	0.0302878	SOX3_SOX2	ENST00000290341.3|IGF2BP1|ENSG00000159217.5|insulin-like growth factor 2 mRNA binding protein 1
hg19_v2_chr4_+_78079570_78079586	0.0302521	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr6_+_135502408_135502459	0.0302436	SOX3_SOX2	ENST00000341911.5|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000442647.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000316528.8|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr12_+_49761224_49761259	0.0300806	SOX3_SOX2	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr4_-_69111401_69111438	0.0300746	SOX3_SOX2	ENST00000332644.5|TMPRSS11B|ENSG00000185873.7|transmembrane protease, serine 11B
hg19_v2_chr10_-_97321165_97321176	0.0300075	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr10_-_97200772_97200919	0.0299713	SOX3_SOX2	ENST00000371241.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000354106.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371239.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000361941.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000277982.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371245.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr4_+_39046615_39046680	0.0298974	SOX3_SOX2	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr4_+_71587669_71587752	0.0298198	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr5_+_70751442_70751456	0.0297804	SOX3_SOX2	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr10_+_47894572_47894572	0.0296167	SOX3_SOX2	ENST00000355876.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr8_-_124279627_124279627	0.0296014	SOX3_SOX2	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr13_-_33760216_33760234	0.0295567	SOX3_SOX2	ENST00000255486.4|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr3_-_141747950_141748004	0.0295547	SOX3_SOX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr16_+_68573116_68573228	0.0295275	SOX3_SOX2	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr3_-_12200851_12200885	0.0295206	SOX3_SOX2	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr2_+_149402553_149402568	0.0294971	SOX3_SOX2	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr11_-_61582579_61582763	0.0294392	SOX3_SOX2	ENST00000539419.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545245.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545405.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000542506.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1
hg19_v2_chr12_-_52887034_52887049	0.0294071	SOX3_SOX2	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr15_+_80987617_80987720	0.0293216	SOX3_SOX2	ENST00000258884.4|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C 	ENST00000558464.1|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C
hg19_v2_chr19_-_55690758_55690780	0.0293162	SOX3_SOX2	ENST00000590851.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chrX_-_122756660_122756696	0.0293136	SOX3_SOX2	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr2_-_224810070_224810104	0.0293109	SOX3_SOX2	ENST00000429915.1|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1 	ENST00000233055.4|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1
hg19_v2_chr6_-_31763276_31763294	0.0293099	SOX3_SOX2	ENST00000440048.1|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr8_+_32579271_32579316	0.0292922	SOX3_SOX2	ENST00000518084.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr3_+_37440653_37440653	0.0292908	SOX3_SOX2	ENST00000328376.5|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35 	ENST00000452017.2|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35
hg19_v2_chr20_+_55205825_55205938	0.0292506	SOX3_SOX2	ENST00000544508.1|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr9_+_112852477_112852514	0.0292471	SOX3_SOX2	ENST00000480388.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr2_-_106015491_106015518	0.0292269	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr1_+_36348790_36348822	0.0291545	SOX3_SOX2	ENST00000373204.4|AGO1|ENSG00000092847.6|argonaute RISC catalytic component 1
hg19_v2_chr1_-_214638146_214638146	0.0290715	SOX3_SOX2	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr12_-_46662888_46662910	0.0290497	SOX3_SOX2	ENST00000546893.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr3_+_42947600_42947680	0.0290457	SOX3_SOX2	ENST00000328199.6|ZNF662|ENSG00000182983.10|zinc finger protein 662 	ENST00000541208.1|ZNF662|ENSG00000182983.10|zinc finger protein 662
hg19_v2_chr10_-_14596140_14596228	0.0289745	SOX3_SOX2	ENST00000496330.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr6_-_160210692_160210705	0.0289445	SOX3_SOX2	ENST00000538128.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000537390.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr14_+_96968707_96968788	0.02893	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr14_-_24610779_24610834	0.0288978	SOX3_SOX2	ENST00000560403.1|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9 	ENST00000419198.2|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9 	ENST00000216799.4|EMC9|ENSG00000100908.9|ER membrane protein complex subunit 9
hg19_v2_chr19_+_17420340_17420383	0.0287946	SOX3_SOX2	ENST00000359866.4|DDA1|ENSG00000130311.6|DET1 and DDB1 associated 1
hg19_v2_chr8_-_128960591_128960591	0.0287595	SOX3_SOX2	ENST00000539634.1|TMEM75|ENSG00000256655.1|transmembrane protein 75
hg19_v2_chr3_+_191046810_191046874	0.0287412	SOX3_SOX2	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr7_+_5632436_5632454	0.0287403	SOX3_SOX2	ENST00000340250.6|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 	ENST00000382361.3|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
hg19_v2_chr12_+_133707204_133707236	0.0286764	SOX3_SOX2	ENST00000426665.2|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr19_+_2269485_2269526	0.0286568	SOX3_SOX2	ENST00000582888.4|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1 	ENST00000602676.2|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1 	ENST00000322297.4|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1 	ENST00000583542.4|OAZ1|ENSG00000104904.8|ornithine decarboxylase antizyme 1
hg19_v2_chr2_+_210517895_210518021	0.0286418	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr3_+_159557637_159557650	0.028613	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr3_+_182983126_182983135	0.0285988	SOX3_SOX2	ENST00000481531.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr4_+_26322987_26323031	0.028595	SOX3_SOX2	ENST00000505958.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr20_+_19738300_19738352	0.0285923	SOX3_SOX2	ENST00000432334.1|RP1-122P22.2|ENSG00000233895.1|RP1-122P22.2
hg19_v2_chr1_+_82165350_82165455	0.0285403	SOX3_SOX2	ENST00000359929.3|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr2_+_27760247_27760261	0.0284714	SOX3_SOX2	ENST00000447166.1|AC109829.1|ENSG00000233438.1|Uncharacterized protein
hg19_v2_chr3_+_52720187_52720196	0.0284227	SOX3_SOX2	ENST00000474423.1|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar)
hg19_v2_chr19_-_18385221_18385245	0.0284189	SOX3_SOX2	ENST00000595654.2|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000593659.1|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000599528.1|KIAA1683|ENSG00000130518.12|KIAA1683
hg19_v2_chr9_-_136344197_136344232	0.0283008	SOX3_SOX2	ENST00000414172.1|SLC2A6|ENSG00000160326.9|solute carrier family 2 (facilitated glucose transporter), member 6 	ENST00000371897.4|SLC2A6|ENSG00000160326.9|solute carrier family 2 (facilitated glucose transporter), member 6
hg19_v2_chr1_+_35734616_35734642	0.0282718	SOX3_SOX2	ENST00000441447.1|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr13_+_30002846_30002862	0.0282532	SOX3_SOX2	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr22_+_37959647_37959668	0.028213	SOX3_SOX2	ENST00000415670.1|CDC42EP1|ENSG00000128283.6|CDC42 effector protein (Rho GTPase binding) 1
hg19_v2_chr15_-_88799384_88799430	0.0281429	SOX3_SOX2	ENST00000540489.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000557856.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000558676.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr6_+_15249128_15249177	0.0281253	SOX3_SOX2	ENST00000397311.3|JARID2|ENSG00000008083.9|jumonji, AT rich interactive domain 2
hg19_v2_chr19_-_17375527_17375538	0.0281252	SOX3_SOX2	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr4_+_52709229_52709345	0.0281107	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr1_+_12538594_12538614	0.0281083	SOX3_SOX2	ENST00000543710.1|VPS13D|ENSG00000048707.9|vacuolar protein sorting 13 homolog D (S. cerevisiae)
hg19_v2_chr3_+_69985792_69985874	0.0280998	SOX3_SOX2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr9_-_92051391_92051403	0.0279503	SOX3_SOX2	ENST00000420681.2|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chr1_-_169555709_169555730	0.0279062	SOX3_SOX2	ENST00000546081.1|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr3_+_123813509_123813528	0.0278814	SOX3_SOX2	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr5_-_111092930_111092955	0.0278395	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr22_-_39151434_39151459	0.0277953	SOX3_SOX2	ENST00000439339.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr12_-_96793844_96793855	0.0276955	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr13_+_99853028_99853064	0.0276786	SOX3_SOX2	ENST00000355700.5|UBAC2|ENSG00000134882.11|UBA domain containing 2 	ENST00000403766.3|UBAC2|ENSG00000134882.11|UBA domain containing 2
hg19_v2_chr9_-_136933092_136933129	0.0276383	SOX3_SOX2	ENST00000357885.2|BRD3|ENSG00000169925.12|bromodomain containing 3
hg19_v2_chr16_-_4817129_4817219	0.0276201	SOX3_SOX2	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr15_-_54267147_54267170	0.0274578	SOX3_SOX2	ENST00000558866.1|RP11-643A5.2|ENSG00000259669.1|RP11-643A5.2	ENST00000558920.1|RP11-643A5.2|ENSG00000259669.1|RP11-643A5.2
hg19_v2_chr5_-_33892204_33892297	0.0274115	SOX3_SOX2	ENST00000504830.1|ADAMTS12|ENSG00000151388.6|ADAM metallopeptidase with thrombospondin type 1 motif, 12
hg19_v2_chr17_+_27369918_27370010	0.0273886	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr15_+_84115868_84115980	0.0273698	SOX3_SOX2	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr1_-_110283660_110283660	0.0273448	SOX3_SOX2	ENST00000361066.2|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr11_+_114271367_114271401	0.027279	SOX3_SOX2	ENST00000544582.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7 	ENST00000545678.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr8_-_95449155_95449188	0.0270693	SOX3_SOX2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr10_+_24498060_24498102	0.0270544	SOX3_SOX2	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr4_+_76649797_76650004	0.0270529	SOX3_SOX2	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr1_-_23495303_23495338	0.0270401	SOX3_SOX2	ENST00000314174.5|LUZP1|ENSG00000169641.9|leucine zipper protein 1 	ENST00000471849.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr2_-_69064324_69064344	0.0269876	SOX3_SOX2	ENST00000415448.1|AC097495.3|ENSG00000228329.1|AC097495.3
hg19_v2_chr15_+_41136263_41136291	0.0269714	SOX3_SOX2	ENST00000568823.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr10_+_97759848_97759883	0.026883	SOX3_SOX2	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr3_+_49058444_49058618	0.0268473	SOX3_SOX2	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr5_+_125758865_125758876	0.0267986	SOX3_SOX2	ENST00000542322.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000544396.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr19_+_21106081_21106207	0.0267894	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr2_+_202098166_202098202	0.0267868	SOX3_SOX2	ENST00000392263.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264274.9|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392259.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392266.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000432109.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264275.5|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr16_-_48281305_48281419	0.0267778	SOX3_SOX2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr4_-_48908805_48908821	0.0267013	SOX3_SOX2	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr3_-_126373929_126373998	0.0266803	SOX3_SOX2	ENST00000523403.1|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3 	ENST00000524230.2|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3
hg19_v2_chr1_-_41487415_41487426	0.0266618	SOX3_SOX2	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr4_-_7941596_7941653	0.0266336	SOX3_SOX2	ENST00000420658.1|AFAP1|ENSG00000196526.6|actin filament associated protein 1 	ENST00000358461.2|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr19_-_23941680_23941704	0.0266022	SOX3_SOX2	ENST00000402377.3|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr1_-_21620877_21620963	0.0265335	SOX3_SOX2	ENST00000527991.1|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr2_+_33683109_33683132	0.0265324	SOX3_SOX2	ENST00000437184.1|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr1_-_225840747_225840860	0.0264762	SOX3_SOX2	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr10_-_125853200_125853208	0.0264748	SOX3_SOX2	ENST00000421115.1|CHST15|ENSG00000182022.13|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
hg19_v2_chr8_-_38326119_38326134	0.0264106	SOX3_SOX2	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr4_+_75023816_75023890	0.0263909	SOX3_SOX2	ENST00000395759.2|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000331145.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000359107.5|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000325278.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
hg19_v2_chr4_+_141445311_141445332	0.0263776	SOX3_SOX2	ENST00000323570.3|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2 	ENST00000511887.2|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr10_+_47894023_47894023	0.0263772	SOX3_SOX2	ENST00000358474.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr5_+_125758813_125758845	0.026277	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr7_-_6388537_6388611	0.0261927	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr10_-_99030395_99030434	0.0261868	SOX3_SOX2	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr22_+_20905422_20905577	0.0261575	SOX3_SOX2	ENST00000424287.1|MED15|ENSG00000099917.13|mediator complex subunit 15 	ENST00000423862.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr12_-_49453557_49453557	0.0261571	SOX3_SOX2	ENST00000547610.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr10_-_104262460_104262489	0.0261222	SOX3_SOX2	ENST00000446605.2|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000369905.4|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 	ENST00000545684.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chr2_+_131513864_131513922	0.0261218	SOX3_SOX2	ENST00000458606.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3 	ENST00000423981.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
hg19_v2_chr14_+_57857262_57857334	0.0261189	SOX3_SOX2	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr5_+_149865377_149865418	0.0260873	SOX3_SOX2	ENST00000522491.1|NDST1|ENSG00000070614.10|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
hg19_v2_chr17_+_43971643_43971748	0.0260577	SOX3_SOX2	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr4_-_85887503_85887544	0.0260571	SOX3_SOX2	ENST00000509172.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000322366.6|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000295888.4|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3 	ENST00000502713.1|WDFY3|ENSG00000163625.11|WD repeat and FYVE domain containing 3
hg19_v2_chr2_-_198299726_198299815	0.0259805	SOX3_SOX2	ENST00000409915.4|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000487698.1|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000414963.2|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000335508.6|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa
hg19_v2_chr11_-_11643540_11643566	0.0259212	SOX3_SOX2	ENST00000227756.4|GALNT18|ENSG00000110328.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
hg19_v2_chr18_-_73967160_73967169	0.0259176	SOX3_SOX2	ENST00000579714.1|RP11-94B19.7|ENSG00000265717.1|RP11-94B19.7
hg19_v2_chrX_-_151619746_151619830	0.0258127	SOX3_SOX2	ENST00000370314.4|GABRA3|ENSG00000011677.8|gamma-aminobutyric acid (GABA) A receptor, alpha 3
hg19_v2_chr15_+_79166065_79166163	0.0258049	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr1_+_47137445_47137533	0.0257741	SOX3_SOX2	ENST00000569393.1|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000334122.4|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000415500.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr17_+_27717415_27717618	0.0257663	SOX3_SOX2	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr9_-_35563896_35563911	0.0257057	SOX3_SOX2	ENST00000399742.2|FAM166B|ENSG00000215187.5|family with sequence similarity 166, member B
hg19_v2_chr17_+_64961026_64961026	0.025573	SOX3_SOX2	ENST00000262138.3|CACNG4|ENSG00000075461.5|calcium channel, voltage-dependent, gamma subunit 4
hg19_v2_chr5_+_55033845_55033870	0.0255668	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr15_-_98646940_98646945	0.0255461	SOX3_SOX2	ENST00000560195.1|CTD-2544M6.2|ENSG00000259611.1|CTD-2544M6.2
hg19_v2_chr5_+_133707252_133707295	0.0255444	SOX3_SOX2	ENST00000506787.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B 	ENST00000507277.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr16_+_11762270_11762344	0.0255373	SOX3_SOX2	ENST00000329565.5|SNN|ENSG00000184602.5|stannin
hg19_v2_chr22_+_19701985_19702063	0.025516	SOX3_SOX2	ENST00000455784.2|SEPT5|ENSG00000184702.13|septin 5 	ENST00000406395.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr1_+_6673745_6673830	0.0254984	SOX3_SOX2	ENST00000377648.4|PHF13|ENSG00000116273.5|PHD finger protein 13
hg19_v2_chr2_+_177001685_177001685	0.025468	SOX3_SOX2	ENST00000432796.2|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr19_+_12949251_12949370	0.0254423	SOX3_SOX2	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chrX_+_119384607_119384720	0.0254193	SOX3_SOX2	ENST00000326624.2|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33 	ENST00000557385.1|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33
hg19_v2_chr3_-_66024213_66024238	0.0254009	SOX3_SOX2	ENST00000483466.1|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr7_+_7196565_7196714	0.0253575	SOX3_SOX2	ENST00000429911.1|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr2_+_70142189_70142223	0.0253524	SOX3_SOX2	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr11_+_61129456_61129527	0.0253431	SOX3_SOX2	ENST00000278826.6|TMEM138|ENSG00000149483.7|transmembrane protein 138
hg19_v2_chr16_+_57673207_57673343	0.0253112	SOX3_SOX2	ENST00000564783.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000564729.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000565976.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566508.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000544297.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr2_+_227771404_227771431	0.025308	SOX3_SOX2	ENST00000409053.1|RHBDD1|ENSG00000144468.12|rhomboid domain containing 1
hg19_v2_chr8_-_102218292_102218421	0.025239	SOX3_SOX2	ENST00000518336.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000520454.1|ZNF706|ENSG00000120963.7|zinc finger protein 706
hg19_v2_chr6_+_31865552_31865575	0.0252298	SOX3_SOX2	ENST00000469372.1|C2|ENSG00000166278.10|complement component 2 	ENST00000497706.1|C2|ENSG00000166278.10|complement component 2
hg19_v2_chrX_+_48114752_48114830	0.0252174	SOX3_SOX2	ENST00000376919.3|SSX1|ENSG00000126752.7|synovial sarcoma, X breakpoint 1
hg19_v2_chr5_-_146833222_146833261	0.0252167	SOX3_SOX2	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr15_+_71389281_71389306	0.0251213	SOX3_SOX2	ENST00000355327.3|THSD4|ENSG00000187720.10|thrombospondin, type I, domain containing 4
hg19_v2_chr2_+_202098203_202098256	0.0250986	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr1_-_31902614_31902614	0.0250757	SOX3_SOX2	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr11_-_107729887_107729927	0.0250709	SOX3_SOX2	ENST00000525815.1|SLC35F2|ENSG00000110660.10|solute carrier family 35, member F2
hg19_v2_chr2_+_71127699_71127744	0.025048	SOX3_SOX2	ENST00000234392.2|VAX2|ENSG00000116035.2|ventral anterior homeobox 2
hg19_v2_chr2_+_173955327_173955347	0.0250268	SOX3_SOX2	ENST00000422149.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr3_+_140947563_140947577	0.0249934	SOX3_SOX2	ENST00000505013.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr20_-_36889127_36889174	0.0249844	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr19_+_1942453_1942485	0.0249735	SOX3_SOX2	ENST00000591752.1|CSNK1G2|ENSG00000133275.11|casein kinase 1, gamma 2
hg19_v2_chr10_-_65028817_65028828	0.0249502	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr1_-_8877692_8877732	0.0249352	SOX3_SOX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr2_-_216240386_216240458	0.0248809	SOX3_SOX2	ENST00000438981.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr1_+_162467595_162467655	0.0248674	SOX3_SOX2	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chr1_+_54703710_54703710	0.0248669	SOX3_SOX2	ENST00000361350.4|SSBP3-AS1|ENSG00000198711.4|SSBP3 antisense RNA 1
hg19_v2_chr1_+_66458072_66458109	0.0248611	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr12_-_52845910_52845938	0.024858	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr14_+_105781102_105781230	0.0247927	SOX3_SOX2	ENST00000547217.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr3_+_160473343_160473400	0.0247677	SOX3_SOX2	ENST00000497343.1|PPM1L|ENSG00000163590.9|protein phosphatase, Mg2+/Mn2+ dependent, 1L
hg19_v2_chr13_-_36920615_36920659	0.0247532	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr1_-_151431909_151431987	0.0247515	SOX3_SOX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr15_+_74218787_74218813	0.0247241	SOX3_SOX2	ENST00000261921.7|LOXL1|ENSG00000129038.11|lysyl oxidase-like 1
hg19_v2_chr19_+_42254885_42254970	0.0247193	SOX3_SOX2	ENST00000595740.1|CEACAM6|ENSG00000086548.8|carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
hg19_v2_chrX_+_153686614_153686629	0.0247071	SOX3_SOX2	ENST00000369682.3|PLXNA3|ENSG00000130827.5|plexin A3
hg19_v2_chr4_-_52904425_52904471	0.0247036	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr9_+_103189536_103189601	0.0246937	SOX3_SOX2	ENST00000374885.1|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr2_-_216257849_216257907	0.0246817	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr2_+_17721230_17721255	0.0246599	SOX3_SOX2	ENST00000457525.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr19_+_52264449_52264465	0.0246387	SOX3_SOX2	ENST00000599326.1|FPR2|ENSG00000171049.8|formyl peptide receptor 2 	ENST00000598953.1|FPR2|ENSG00000171049.8|formyl peptide receptor 2
hg19_v2_chr21_+_27011584_27011618	0.0246274	SOX3_SOX2	ENST00000400532.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000480456.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000312957.5|JAM2|ENSG00000154721.10|junctional adhesion molecule 2
hg19_v2_chrX_-_128977781_128977869	0.0245554	SOX3_SOX2	ENST00000357166.6|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr2_+_181845532_181845556	0.0245457	SOX3_SOX2	ENST00000602475.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr11_+_114128522_114128553	0.0245409	SOX3_SOX2	ENST00000535401.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr3_-_194354010_194354164	0.0244965	SOX3_SOX2	ENST00000381975.3|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000347147.4|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000473092.1|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000392432.2|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000273580.7|TMEM44|ENSG00000145014.13|transmembrane protein 44
hg19_v2_chr12_-_49076002_49076043	0.0244483	SOX3_SOX2	ENST00000357861.3|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550347.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000420613.2|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550931.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550870.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr19_-_37958086_37958150	0.024427	SOX3_SOX2	ENST00000592490.1|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000392149.2|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr8_-_8318847_8318883	0.0243803	SOX3_SOX2	ENST00000521218.1|CTA-398F10.2|ENSG00000254153.1|CTA-398F10.2
hg19_v2_chr1_-_226065330_226065386	0.0243565	SOX3_SOX2	ENST00000436966.1|TMEM63A|ENSG00000196187.7|transmembrane protein 63A
hg19_v2_chr18_-_59415987_59416065	0.0243357	SOX3_SOX2	ENST00000590199.1|RP11-879F14.1|ENSG00000267175.1|RP11-879F14.1	ENST00000590968.1|RP11-879F14.1|ENSG00000267175.1|RP11-879F14.1
hg19_v2_chr19_-_5340730_5340859	0.0243334	SOX3_SOX2	ENST00000372412.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000357368.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000262963.6|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000348075.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000353284.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr12_-_93835665_93835750	0.024267	SOX3_SOX2	ENST00000552442.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N 	ENST00000550657.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr6_+_36410762_36410858	0.0241816	SOX3_SOX2	ENST00000483557.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000498267.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000544295.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000449081.2|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000536244.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000460983.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20
hg19_v2_chr10_+_103986085_103986085	0.0241805	SOX3_SOX2	ENST00000370005.3|ELOVL3|ENSG00000119915.4|ELOVL fatty acid elongase 3
hg19_v2_chr2_+_75061108_75061265	0.0241633	SOX3_SOX2	ENST00000290573.2|HK2|ENSG00000159399.5|hexokinase 2
hg19_v2_chr4_+_1873155_1873188	0.0241602	SOX3_SOX2	ENST00000507820.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1 	ENST00000514045.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1
hg19_v2_chr2_+_30370382_30370421	0.0241325	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr7_-_30009542_30009562	0.0240908	SOX3_SOX2	ENST00000438497.1|SCRN1|ENSG00000136193.12|secernin 1
hg19_v2_chr2_-_158295915_158295944	0.0240833	SOX3_SOX2	ENST00000418920.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein
hg19_v2_chr15_+_52043813_52043864	0.0240501	SOX3_SOX2	ENST00000435126.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr14_+_91580357_91580454	0.0239977	SOX3_SOX2	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr15_+_93426514_93426562	0.0239898	SOX3_SOX2	ENST00000556722.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr7_+_107224364_107224391	0.023966	SOX3_SOX2	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chrX_-_85302531_85302570	0.0239347	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr18_+_3451584_3451606	0.0239242	SOX3_SOX2	ENST00000551541.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr1_-_53793725_53793789	0.0237832	SOX3_SOX2	ENST00000371454.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr19_+_9473676_9473712	0.0237331	SOX3_SOX2	ENST00000343499.4|ZNF177|ENSG00000188629.7|zinc finger protein 177 	ENST00000592912.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr17_+_4487294_4487307	0.0236516	SOX3_SOX2	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr15_-_38519066_38519111	0.0236453	SOX3_SOX2	ENST00000561320.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1	ENST00000561161.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1
hg19_v2_chr2_+_46926048_46926095	0.0235871	SOX3_SOX2	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr21_-_33104367_33104441	0.0235817	SOX3_SOX2	ENST00000286835.7|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4 	ENST00000399804.1|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4
hg19_v2_chr11_-_3400442_3400453	0.02357	SOX3_SOX2	ENST00000429541.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000532539.1|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr22_+_27053545_27053561	0.0235632	SOX3_SOX2	ENST00000458302.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000419237.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr2_+_220492116_220492137	0.0234453	SOX3_SOX2	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr1_-_173638976_173639007	0.0234324	SOX3_SOX2	ENST00000333279.2|ANKRD45|ENSG00000183831.6|ankyrin repeat domain 45
hg19_v2_chr15_-_65398647_65398697	0.0234094	SOX3_SOX2	ENST00000502113.2|UBAP1L|ENSG00000246922.4|ubiquitin associated protein 1-like
hg19_v2_chr16_+_4606347_4606491	0.0233631	SOX3_SOX2	ENST00000444310.4|C16orf96|ENSG00000205832.7|chromosome 16 open reading frame 96
hg19_v2_chr7_-_42951509_42951904	0.023359	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chr1_+_185126598_185126655	0.0233453	SOX3_SOX2	ENST00000450350.1|SWT1|ENSG00000116668.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
hg19_v2_chr8_+_107460147_107460207	0.0233107	SOX3_SOX2	ENST00000442977.2|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr6_+_44355257_44355315	0.0232804	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr22_+_27068704_27068763	0.0232234	SOX3_SOX2	ENST00000444388.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000450963.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000449017.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr12_+_70219052_70219096	0.0232191	SOX3_SOX2	ENST00000552032.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like 	ENST00000547771.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like
hg19_v2_chr1_+_10459111_10459175	0.0231926	SOX3_SOX2	ENST00000541529.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000270776.8|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000483936.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000538557.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr22_-_22090043_22090058	0.023185	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr6_-_31509714_31509795	0.0231749	SOX3_SOX2	ENST00000456662.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000431908.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000456976.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000428450.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000453105.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000418897.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000415382.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000449074.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000419020.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000428098.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr2_+_192109911_192110170	0.0231324	SOX3_SOX2	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr1_+_100111479_100111499	0.0231207	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr17_-_61777459_61777502	0.0230579	SOX3_SOX2	ENST00000578993.1|LIMD2|ENSG00000136490.4|LIM domain containing 2 	ENST00000583211.1|LIMD2|ENSG00000136490.4|LIM domain containing 2 	ENST00000259006.3|LIMD2|ENSG00000136490.4|LIM domain containing 2
hg19_v2_chr2_+_183580954_183581049	0.0230378	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr17_+_26698677_26698732	0.0230324	SOX3_SOX2	ENST00000457710.3|SARM1|ENSG00000004139.9|sterile alpha and TIR motif containing 1
hg19_v2_chr17_+_43972010_43972040	0.0230253	SOX3_SOX2	ENST00000334239.8|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000446361.3|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr3_-_197024965_197025038	0.0229753	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr20_-_45318230_45318418	0.0229488	SOX3_SOX2	ENST00000372114.3|TP53RK|ENSG00000172315.5|TP53 regulating kinase
hg19_v2_chr11_-_64546202_64546258	0.022945	SOX3_SOX2	ENST00000377390.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000227503.9|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000377394.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000422298.2|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000334944.5|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr4_-_109089573_109089585	0.0229273	SOX3_SOX2	ENST00000265165.1|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr3_+_159570722_159570733	0.0228634	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr1_-_9970383_9970421	0.0228123	SOX3_SOX2	ENST00000400904.3|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr11_+_35198118_35198209	0.022808	SOX3_SOX2	ENST00000525211.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526000.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000279452.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000527889.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr16_-_67514982_67515140	0.0227785	SOX3_SOX2	ENST00000565835.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000540149.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000290949.3|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
hg19_v2_chr2_+_220309379_220309413	0.0227754	SOX3_SOX2	ENST00000451076.1|SPEG|ENSG00000072195.10|SPEG complex locus
hg19_v2_chr20_+_10415931_10416011	0.0227672	SOX3_SOX2	ENST00000334534.5|SLX4IP|ENSG00000149346.10|SLX4 interacting protein
hg19_v2_chr8_+_95653302_95653364	0.022703	SOX3_SOX2	ENST00000423620.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1 	ENST00000433389.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr12_-_95009837_95009854	0.022669	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr2_-_161349909_161350043	0.0226477	SOX3_SOX2	ENST00000392753.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr1_-_108743471_108743499	0.022643	SOX3_SOX2	ENST00000569674.1|SLC25A24|ENSG00000085491.11|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
hg19_v2_chr5_+_179921344_179921423	0.0226281	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr8_-_29940464_29940486	0.0226239	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr8_+_11660120_11660221	0.0226162	SOX3_SOX2	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr2_-_198175495_198175525	0.0226076	SOX3_SOX2	ENST00000409153.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000409919.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000539527.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44
hg19_v2_chr13_+_30002741_30002776	0.0225895	SOX3_SOX2	ENST00000380808.2|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr10_+_115511434_115511454	0.0225143	SOX3_SOX2	ENST00000369312.4|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr1_-_85930246_85930289	0.0223804	SOX3_SOX2	ENST00000426972.3|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr2_+_203241531_203241659	0.0223638	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr17_+_42148225_42148317	0.0222879	SOX3_SOX2	ENST00000591696.1|G6PC3|ENSG00000141349.4|glucose 6 phosphatase, catalytic, 3
hg19_v2_chr19_-_1568057_1568142	0.0222611	SOX3_SOX2	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr3_+_179280668_179280769	0.0222563	SOX3_SOX2	ENST00000429709.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000450518.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000392662.1|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000490364.1|ACTL6A|ENSG00000136518.12|actin-like 6A
hg19_v2_chr1_+_10459433_10459689	0.0222251	SOX3_SOX2	ENST00000465632.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000460189.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr3_+_38323785_38323789	0.0222245	SOX3_SOX2	ENST00000466887.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14 	ENST00000448498.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14
hg19_v2_chr3_+_107241783_107241850	0.0222115	SOX3_SOX2	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr8_+_104427581_104427677	0.0222093	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr18_-_74728998_74729051	0.0221844	SOX3_SOX2	ENST00000359645.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397875.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397869.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578193.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578873.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397866.4|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000528160.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000527041.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000526111.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397865.5|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000382582.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr11_+_46402297_46402306	0.0221243	SOX3_SOX2	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr13_+_76210448_76210494	0.0220119	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr16_+_9056563_9056590	0.0220024	SOX3_SOX2	ENST00000564485.1|RP11-77H9.8|ENSG00000260979.1|RP11-77H9.8
hg19_v2_chr4_+_15683369_15683390	0.0219956	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr19_-_39826639_39826825	0.0219616	SOX3_SOX2	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr9_-_73483926_73483945	0.0219082	SOX3_SOX2	ENST00000396283.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000361823.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr12_-_15942309_15942330	0.0218478	SOX3_SOX2	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr6_-_42110342_42110365	0.0218145	SOX3_SOX2	ENST00000356542.5|C6orf132|ENSG00000188112.4|chromosome 6 open reading frame 132
hg19_v2_chr1_-_45672221_45672260	0.0217942	SOX3_SOX2	ENST00000359600.5|ZSWIM5|ENSG00000162415.6|zinc finger, SWIM-type containing 5
hg19_v2_chr8_-_38326139_38326161	0.0217402	SOX3_SOX2	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chrX_-_69509738_69509829	0.0217124	SOX3_SOX2	ENST00000374454.1|PDZD11|ENSG00000120509.6|PDZ domain containing 11 	ENST00000239666.4|PDZD11|ENSG00000120509.6|PDZ domain containing 11
hg19_v2_chr7_+_134464414_134464429	0.0216987	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr12_+_40787194_40787197	0.0216936	SOX3_SOX2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr18_+_11751466_11751475	0.0216556	SOX3_SOX2	ENST00000535121.1|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr8_-_66546439_66546451	0.0216013	SOX3_SOX2	ENST00000276569.3|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr22_+_19419425_19419425	0.0215872	SOX3_SOX2	ENST00000333130.3|MRPL40|ENSG00000185608.4|mitochondrial ribosomal protein L40
hg19_v2_chr2_+_61293021_61293093	0.0215211	SOX3_SOX2	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr19_-_37019136_37019178	0.0214559	SOX3_SOX2	ENST00000592282.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr10_-_65028938_65028989	0.0214325	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr7_-_8302164_8302196	0.0214255	SOX3_SOX2	ENST00000447326.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa 	ENST00000406470.2|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr11_+_65122216_65122238	0.0213867	SOX3_SOX2	ENST00000309880.5|TIGD3|ENSG00000173825.6|tigger transposable element derived 3
hg19_v2_chr19_+_17413663_17413679	0.0213792	SOX3_SOX2	ENST00000594999.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr14_-_103434869_103435038	0.0213774	SOX3_SOX2	ENST00000559043.1|CDC42BPB|ENSG00000198752.5|CDC42 binding protein kinase beta (DMPK-like)
hg19_v2_chr17_-_79358929_79358954	0.0213726	SOX3_SOX2	ENST00000570301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr19_+_19303572_19303651	0.0213595	SOX3_SOX2	ENST00000407360.3|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein 	ENST00000540981.1|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr2_-_38829768_38829825	0.0213466	SOX3_SOX2	ENST00000378915.3|HNRNPLL|ENSG00000143889.11|heterogeneous nuclear ribonucleoprotein L-like
hg19_v2_chr17_+_53046096_53046157	0.0213461	SOX3_SOX2	ENST00000376352.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000299341.4|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000405898.1|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000434978.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000398391.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4
hg19_v2_chr8_-_18871159_18871201	0.0213245	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr3_-_52002194_52002250	0.0212872	SOX3_SOX2	ENST00000466412.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr8_+_11660227_11660306	0.0211989	SOX3_SOX2	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr15_-_65281775_65281844	0.0211735	SOX3_SOX2	ENST00000433215.2|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000558415.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000557795.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome)
hg19_v2_chr17_+_74732889_74732935	0.0211289	SOX3_SOX2	ENST00000591864.1|MFSD11|ENSG00000092931.7|major facilitator superfamily domain containing 11
hg19_v2_chr2_-_197458323_197458416	0.0210336	SOX3_SOX2	ENST00000452031.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr22_+_19702069_19702198	0.021031	SOX3_SOX2	ENST00000412544.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr10_-_46168156_46168246	0.0210151	SOX3_SOX2	ENST00000374371.2|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000335258.7|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chr1_+_206557366_206557368	0.0209985	SOX3_SOX2	ENST00000414007.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2 	ENST00000419187.2|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chr17_+_55334364_55334412	0.020988	SOX3_SOX2	ENST00000322684.3|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2 	ENST00000579590.1|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr16_+_812506_812524	0.0209816	SOX3_SOX2	ENST00000569566.1|MSLN|ENSG00000102854.10|mesothelin
hg19_v2_chr19_+_40873617_40873641	0.0209198	SOX3_SOX2	ENST00000599353.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3
hg19_v2_chr7_+_111846643_111846704	0.0209041	SOX3_SOX2	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr17_-_39183452_39183468	0.020904	SOX3_SOX2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr7_-_27153454_27153469	0.0208983	SOX3_SOX2	ENST00000522456.1|HOXA3|ENSG00000105997.18|homeobox A3
hg19_v2_chr18_+_18943554_18943587	0.0208357	SOX3_SOX2	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr20_+_44563267_44563354	0.0207882	SOX3_SOX2	ENST00000372409.3|PCIF1|ENSG00000100982.7|PDX1 C-terminal inhibiting factor 1
hg19_v2_chr3_-_69171708_69171723	0.0207761	SOX3_SOX2	ENST00000420581.2|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr1_+_167298281_167298319	0.0207491	SOX3_SOX2	ENST00000367862.5|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr6_+_30848771_30848818	0.0207378	SOX3_SOX2	ENST00000503180.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr17_-_77924627_77924661	0.0207197	SOX3_SOX2	ENST00000572862.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000573782.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000574427.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000570373.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000340848.7|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16 	ENST00000576768.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr11_-_95522907_95522989	0.0207173	SOX3_SOX2	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr11_+_73882311_73882413	0.0206777	SOX3_SOX2	ENST00000398427.4|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1 	ENST00000544401.1|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1
hg19_v2_chr2_-_183387283_183387304	0.0206698	SOX3_SOX2	ENST00000435564.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr1_+_26737292_26737322	0.0205883	SOX3_SOX2	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr3_+_138067666_138067745	0.0205607	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr18_-_28682374_28682415	0.0205496	SOX3_SOX2	ENST00000280904.6|DSC2|ENSG00000134755.10|desmocollin 2
hg19_v2_chr19_+_50180409_50180501	0.0204817	SOX3_SOX2	ENST00000391851.4|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chr17_-_73781567_73781629	0.020462	SOX3_SOX2	ENST00000586607.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr9_-_14313641_14313666	0.0204476	SOX3_SOX2	ENST00000380953.1|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr7_-_107643674_107643700	0.0203685	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr1_+_155036204_155036238	0.020341	SOX3_SOX2	ENST00000368409.3|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000359751.4|EFNA4|ENSG00000243364.3|ephrin-A4 	ENST00000556931.1|EFNA3|ENSG00000143590.9|ephrin-A3 	ENST00000505139.1|EFNA3|ENSG00000251246.1|Ephrin-A3; Uncharacterized protein; cDNA FLJ57652, highly similar to Ephrin-A3  	ENST00000427683.2|EFNA4|ENSG00000243364.3|ephrin-A4
hg19_v2_chr8_-_8243968_8244008	0.0203183	SOX3_SOX2	ENST00000520004.1|SGK223|ENSG00000182319.5|Tyrosine-protein kinase SgK223
hg19_v2_chr8_-_18541603_18541650	0.0203118	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr14_-_63974941_63974962	0.0202398	SOX3_SOX2	ENST00000422769.2|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr7_-_140178726_140178774	0.0202348	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr3_-_105588231_105588396	0.0201739	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr8_-_42396185_42396197	0.0201612	SOX3_SOX2	ENST00000518717.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr19_-_18717627_18717660	0.0201481	SOX3_SOX2	ENST00000392386.3|CRLF1|ENSG00000006016.6|cytokine receptor-like factor 1
hg19_v2_chr19_+_35810164_35810291	0.0201061	SOX3_SOX2	ENST00000598537.1|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chr1_+_87794150_87794172	0.0200424	SOX3_SOX2	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chrX_-_46404811_46404876	0.0200106	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chr19_+_532049_532065	0.0199879	SOX3_SOX2	ENST00000606136.1|CDC34|ENSG00000099804.4|cell division cycle 34
hg19_v2_chr22_-_50221160_50221160	0.0199794	SOX3_SOX2	ENST00000404760.1|BRD1|ENSG00000100425.14|bromodomain containing 1
hg19_v2_chr5_-_115872142_115872154	0.0199645	SOX3_SOX2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr1_-_228603694_228603730	0.0199243	SOX3_SOX2	ENST00000366697.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr19_+_50194360_50194410	0.0198749	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chr11_-_64900791_64900834	0.0198679	SOX3_SOX2	ENST00000531018.1|SYVN1|ENSG00000162298.12|synovial apoptosis inhibitor 1, synoviolin
hg19_v2_chr11_-_9286627_9286657	0.0198547	SOX3_SOX2	ENST00000530044.1|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr21_-_46961716_46961785	0.0198175	SOX3_SOX2	ENST00000427839.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr10_+_104263743_104263836	0.0198026	SOX3_SOX2	ENST00000369902.3|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000369899.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000423559.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila)
hg19_v2_chr8_+_82644669_82644738	0.0197681	SOX3_SOX2	ENST00000297265.4|CHMP4C|ENSG00000164695.4|charged multivesicular body protein 4C
hg19_v2_chr1_+_26737253_26737269	0.0197532	SOX3_SOX2	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr6_+_30594619_30594665	0.0197192	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr6_+_46620676_46620696	0.0197026	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chrX_-_72097698_72097698	0.0196319	SOX3_SOX2	ENST00000373530.1|DMRTC1|ENSG00000159123.10|DMRT-like family C1
hg19_v2_chr20_+_39657454_39657470	0.0196216	SOX3_SOX2	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr8_+_107738343_107738413	0.0195961	SOX3_SOX2	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr14_-_20922960_20922999	0.0195925	SOX3_SOX2	ENST00000553640.1|OSGEP|ENSG00000092094.6|O-sialoglycoprotein endopeptidase 	ENST00000488532.2|OSGEP|ENSG00000092094.6|O-sialoglycoprotein endopeptidase
hg19_v2_chr4_+_54243917_54244006	0.0195568	SOX3_SOX2	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr4_+_95128748_95128794	0.0194317	SOX3_SOX2	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr18_-_74844727_74844800	0.0193757	SOX3_SOX2	ENST00000355994.2|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000579129.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr7_+_7222157_7222193	0.0193567	SOX3_SOX2	ENST00000419721.1|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chrX_+_70503526_70503611	0.0193518	SOX3_SOX2	ENST00000413858.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000450092.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr17_+_29664830_29664844	0.0193497	SOX3_SOX2	ENST00000444181.2|NF1|ENSG00000196712.12|neurofibromin 1 	ENST00000417592.2|NF1|ENSG00000196712.12|neurofibromin 1
hg19_v2_chr18_-_13726510_13726662	0.0193153	SOX3_SOX2	ENST00000322247.3|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000592976.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000402563.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000591269.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A
hg19_v2_chr6_+_168418553_168418581	0.0192315	SOX3_SOX2	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr13_-_36920420_36920574	0.0191533	SOX3_SOX2	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr17_-_18950310_18950310	0.019099	SOX3_SOX2	ENST00000573099.1|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr14_-_77923897_77923983	0.0190819	SOX3_SOX2	ENST00000343765.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000327028.4|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000556412.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557466.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000448935.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000553888.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557658.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
hg19_v2_chr14_+_23305783_23305835	0.019029	SOX3_SOX2	ENST00000547279.1|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr6_-_55443831_55443908	0.0190209	SOX3_SOX2	ENST00000428842.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000358072.5|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000508459.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
hg19_v2_chr1_+_150039369_150039444	0.0190075	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr1_+_40840320_40840413	0.0190014	SOX3_SOX2	ENST00000372708.1|SMAP2|ENSG00000084070.7|small ArfGAP2
hg19_v2_chr6_-_64029879_64029891	0.0189905	SOX3_SOX2	ENST00000370658.5|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000485906.2|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000370657.4|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain
hg19_v2_chr12_+_69979113_69979155	0.0189791	SOX3_SOX2	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr3_-_142608001_142608053	0.0189381	SOX3_SOX2	ENST00000295992.3|PCOLCE2|ENSG00000163710.3|procollagen C-endopeptidase enhancer 2
hg19_v2_chr2_-_161350305_161350391	0.0189361	SOX3_SOX2	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr14_+_60712463_60712475	0.0189231	SOX3_SOX2	ENST00000325642.3|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A 	ENST00000529574.1|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A
hg19_v2_chr4_+_62067860_62067900	0.0189183	SOX3_SOX2	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr12_-_106641728_106641805	0.0188187	SOX3_SOX2	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr7_-_22234381_22234430	0.0187546	SOX3_SOX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr6_-_161085291_161085308	0.0186573	SOX3_SOX2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr2_-_114647327_114647351	0.0186276	SOX3_SOX2	ENST00000602760.1|RP11-141B14.1|ENSG00000270019.1|RP11-141B14.1
hg19_v2_chr1_+_227751281_227751298	0.0186165	SOX3_SOX2	ENST00000440339.1|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr16_-_8962544_8962584	0.018611	SOX3_SOX2	ENST00000570125.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr15_-_44486632_44486664	0.0185763	SOX3_SOX2	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr14_-_69619291_69619326	0.0185477	SOX3_SOX2	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr12_+_133613937_133613994	0.0185433	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr15_-_82338460_82338496	0.018536	SOX3_SOX2	ENST00000558133.1|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B 	ENST00000329713.4|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B
hg19_v2_chr17_+_7621045_7621079	0.0184809	SOX3_SOX2	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr3_-_149688502_149688526	0.0184738	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr6_-_31619892_31619964	0.0184145	SOX3_SOX2	ENST00000454165.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000428326.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000452994.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr9_-_92051354_92051386	0.0183475	SOX3_SOX2	ENST00000418828.1|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chr5_-_98262240_98262240	0.0183363	SOX3_SOX2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr20_-_5591626_5591677	0.0183336	SOX3_SOX2	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr1_+_201857798_201857836	0.0183318	SOX3_SOX2	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr3_+_88108381_88108450	0.0183156	SOX3_SOX2	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr19_+_20011775_20011870	0.0182885	SOX3_SOX2	ENST00000592245.1|AC007204.2|ENSG00000267268.1|AC007204.2	ENST00000592160.1|ZNF93|ENSG00000184635.9|zinc finger protein 93 	ENST00000343769.5|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chr3_+_50649302_50649339	0.0182833	SOX3_SOX2	ENST00000446044.1|MAPKAPK3|ENSG00000114738.6|mitogen-activated protein kinase-activated protein kinase 3
hg19_v2_chr9_-_35115836_35115893	0.0182746	SOX3_SOX2	ENST00000378566.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000378554.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000322813.5|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr19_+_16187816_16187838	0.0182621	SOX3_SOX2	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr19_+_55795493_55795534	0.0182469	SOX3_SOX2	ENST00000309383.1|BRSK1|ENSG00000160469.12|BR serine/threonine kinase 1
hg19_v2_chrX_+_72062617_72062617	0.0182432	SOX3_SOX2	ENST00000440247.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr1_+_156338993_156339011	0.0182218	SOX3_SOX2	ENST00000368249.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000368246.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000537040.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000400992.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000255013.3|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000451864.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene)
hg19_v2_chr3_+_107241882_107241904	0.0181861	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr14_-_21852119_21852143	0.0181518	SOX3_SOX2	ENST00000555943.1|SUPT16H|ENSG00000092201.5|suppressor of Ty 16 homolog (S. cerevisiae)
hg19_v2_chr5_-_160973649_160973713	0.0181508	SOX3_SOX2	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chr15_-_72521017_72521045	0.0181473	SOX3_SOX2	ENST00000561609.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr20_-_44176060_44176067	0.0181206	SOX3_SOX2	ENST00000354280.4|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor 	ENST00000504988.1|EPPIN-WFDC6|ENSG00000249139.1|EPPIN-WFDC6 readthrough
hg19_v2_chrX_-_53711064_53711132	0.0181064	SOX3_SOX2	ENST00000342160.3|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 	ENST00000446750.1|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr1_+_161129254_161129327	0.0180626	SOX3_SOX2	ENST00000368002.3|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21 	ENST00000289865.8|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21 	ENST00000479344.1|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21 	ENST00000368001.1|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21
hg19_v2_chr13_-_36920872_36920934	0.0179974	SOX3_SOX2	ENST00000451493.1|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr9_-_140142181_140142208	0.0179924	SOX3_SOX2	ENST00000484720.1|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr3_+_130613226_130613485	0.0179812	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr19_-_44439387_44439419	0.017927	SOX3_SOX2	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr8_-_30585439_30585494	0.0179094	SOX3_SOX2	ENST00000221130.5|GSR|ENSG00000104687.8|glutathione reductase
hg19_v2_chr6_+_13925318_13925424	0.0178825	SOX3_SOX2	ENST00000423553.2|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000537388.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr8_+_33613265_33613295	0.0178542	SOX3_SOX2	ENST00000517292.1|RP11-317N12.1|ENSG00000253642.1|RP11-317N12.1
hg19_v2_chr9_-_74525658_74525658	0.0178034	SOX3_SOX2	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr3_+_183353356_183353450	0.0177793	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr2_-_178128149_178128198	0.0177698	SOX3_SOX2	ENST00000423513.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr19_+_55043977_55044008	0.0177094	SOX3_SOX2	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr1_-_115053781_115053853	0.0176929	SOX3_SOX2	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr9_-_27297126_27297140	0.0176892	SOX3_SOX2	ENST00000380031.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000537675.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000380032.3|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated
hg19_v2_chr12_-_54653313_54653416	0.0176201	SOX3_SOX2	ENST00000550411.1|CBX5|ENSG00000094916.9|chromobox homolog 5 	ENST00000439541.2|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr1_+_47799542_47799624	0.017619	SOX3_SOX2	ENST00000471289.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 	ENST00000450808.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
hg19_v2_chr5_-_111093167_111093252	0.0175505	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr12_-_121734489_121734564	0.0175496	SOX3_SOX2	ENST00000412367.2|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta 	ENST00000402834.4|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta 	ENST00000404169.3|CAMKK2|ENSG00000110931.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
hg19_v2_chr17_-_76123101_76123168	0.0175461	SOX3_SOX2	ENST00000392467.3|TMC6|ENSG00000141524.11|transmembrane channel-like 6
hg19_v2_chr10_-_11574274_11574428	0.0175445	SOX3_SOX2	ENST00000277575.5|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr18_+_32558380_32558399	0.0174892	SOX3_SOX2	ENST00000588349.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr8_-_95487272_95487330	0.0174425	SOX3_SOX2	ENST00000297592.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chrX_+_107288239_107288259	0.0174203	SOX3_SOX2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr8_+_91803695_91803778	0.0173977	SOX3_SOX2	ENST00000417640.2|NECAB1|ENSG00000123119.7|N-terminal EF-hand calcium binding protein 1
hg19_v2_chr7_-_122840015_122840040	0.0173207	SOX3_SOX2	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr5_+_110427983_110428087	0.0173107	SOX3_SOX2	ENST00000513710.2|WDR36|ENSG00000134987.7|WD repeat domain 36 	ENST00000505303.1|WDR36|ENSG00000134987.7|WD repeat domain 36
hg19_v2_chr8_-_17270809_17270848	0.0172753	SOX3_SOX2	ENST00000180173.5|MTMR7|ENSG00000003987.9|myotubularin related protein 7 	ENST00000521857.1|MTMR7|ENSG00000003987.9|myotubularin related protein 7
hg19_v2_chr14_-_23446003_23446019	0.0172738	SOX3_SOX2	ENST00000553911.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr2_+_162272605_162272753	0.0172579	SOX3_SOX2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr19_+_38880252_38880252	0.017245	SOX3_SOX2	ENST00000586301.1|SPRED3|ENSG00000188766.8|sprouty-related, EVH1 domain containing 3
hg19_v2_chr16_-_5116025_5116111	0.0172215	SOX3_SOX2	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr6_-_7313381_7313458	0.0171909	SOX3_SOX2	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr12_+_94071341_94071493	0.0171418	SOX3_SOX2	ENST00000542893.2|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr11_+_63754294_63754323	0.0171394	SOX3_SOX2	ENST00000543988.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chrX_+_72062802_72062802	0.0171063	SOX3_SOX2	ENST00000373533.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr4_+_184580420_184580485	0.0170895	SOX3_SOX2	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr4_+_159593271_159593295	0.0170874	SOX3_SOX2	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr17_-_56065484_56065513	0.0170565	SOX3_SOX2	ENST00000581208.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chrX_-_73513307_73513350	0.0170337	SOX3_SOX2	ENST00000602420.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr2_+_170590321_170590408	0.0170219	SOX3_SOX2	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr7_-_140178775_140178866	0.0169759	SOX3_SOX2	ENST00000474576.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000473444.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000471104.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr3_-_11685345_11685432	0.0168105	SOX3_SOX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr19_+_58341656_58341694	0.0167735	SOX3_SOX2	ENST00000442832.4|ZNF587B|ENSG00000269343.2|zinc finger protein 587B 	ENST00000594901.1|ZNF587B|ENSG00000269343.2|zinc finger protein 587B
hg19_v2_chr22_+_20905269_20905278	0.0167446	SOX3_SOX2	ENST00000457322.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr17_-_19364269_19364308	0.0166464	SOX3_SOX2	ENST00000421796.2|AC004448.5|ENSG00000235979.4|AC004448.5	ENST00000585389.1|AC004448.5|ENSG00000235979.4|AC004448.5	ENST00000609249.1|AC004448.5|ENSG00000235979.4|AC004448.5
hg19_v2_chr8_-_9009079_9009092	0.0166213	SOX3_SOX2	ENST00000519699.1|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr18_+_3451646_3451722	0.0166162	SOX3_SOX2	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr2_+_207024306_207024392	0.0166052	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr2_-_158182410_158182446	0.0165911	SOX3_SOX2	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr3_+_141596371_141596516	0.0165639	SOX3_SOX2	ENST00000495216.1|ATP1B3|ENSG00000069849.6|ATPase, Na+/K+ transporting, beta 3 polypeptide
hg19_v2_chr10_+_115999089_115999141	0.0165536	SOX3_SOX2	ENST00000392982.3|VWA2|ENSG00000165816.8|von Willebrand factor A domain containing 2
hg19_v2_chr10_+_35484793_35484937	0.0165437	SOX3_SOX2	ENST00000488741.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000474931.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000468236.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000344351.5|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000490511.1|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr1_+_36621174_36621191	0.0165318	SOX3_SOX2	ENST00000429533.2|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr1_+_169079823_169079836	0.0164641	SOX3_SOX2	ENST00000367813.3|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr15_-_78111788_78111799	0.0164199	SOX3_SOX2	ENST00000566711.1|LINGO1|ENSG00000169783.8|leucine rich repeat and Ig domain containing 1
hg19_v2_chr3_+_160473996_160474033	0.01641	SOX3_SOX2	ENST00000498165.1|PPM1L|ENSG00000163590.9|protein phosphatase, Mg2+/Mn2+ dependent, 1L
hg19_v2_chr4_-_175443484_175443650	0.0164069	SOX3_SOX2	ENST00000514584.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000542498.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000296521.7|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000422112.2|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000504433.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr6_+_41040678_41040722	0.0163953	SOX3_SOX2	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr8_+_24151553_24151590	0.0163842	SOX3_SOX2	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr15_-_74421477_74421619	0.0163758	SOX3_SOX2	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr3_+_36421971_36422065	0.0162698	SOX3_SOX2	ENST00000457375.2|STAC|ENSG00000144681.6|SH3 and cysteine rich domain 	ENST00000434649.1|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr1_-_150946911_150946954	0.0162686	SOX3_SOX2	ENST00000457392.1|CERS2|ENSG00000143418.15|ceramide synthase 2 	ENST00000421609.1|CERS2|ENSG00000143418.15|ceramide synthase 2
hg19_v2_chr20_-_19738569_19738679	0.0161774	SOX3_SOX2	ENST00000598007.1|AL121761.2|ENSG00000268628.1|Uncharacterized protein
hg19_v2_chr6_-_166582107_166582188	0.0161727	SOX3_SOX2	ENST00000296946.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000461348.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000366871.3|T|ENSG00000164458.5|T, brachyury homolog (mouse)
hg19_v2_chr20_+_55099542_55099542	0.0161386	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr18_-_47013586_47013633	0.0160787	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr2_-_207024233_207024327	0.0160742	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr11_+_128563652_128563689	0.0160608	SOX3_SOX2	ENST00000527786.2|FLI1|ENSG00000151702.12|Fli-1 proto-oncogene, ETS transcription factor
hg19_v2_chr2_+_30454390_30454409	0.0160586	SOX3_SOX2	ENST00000395323.3|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000406087.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000404397.1|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr4_-_48116540_48116569	0.0160365	SOX3_SOX2	ENST00000506073.1|TXK|ENSG00000074966.6|TXK tyrosine kinase
hg19_v2_chr20_+_35090150_35090240	0.0159434	SOX3_SOX2	ENST00000340491.4|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chrX_+_69488155_69488172	0.015911	SOX3_SOX2	ENST00000374495.3|ARR3|ENSG00000120500.13|arrestin 3, retinal (X-arrestin)
hg19_v2_chr11_-_126081532_126081587	0.0158993	SOX3_SOX2	ENST00000533628.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000298317.4|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000532674.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4
hg19_v2_chr11_-_9286921_9286937	0.0158294	SOX3_SOX2	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr1_+_112298514_112298550	0.0157662	SOX3_SOX2	ENST00000536167.1|DDX20|ENSG00000064703.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
hg19_v2_chr18_+_56531584_56531646	0.0157643	SOX3_SOX2	ENST00000590287.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr2_-_14541060_14541087	0.0157563	SOX3_SOX2	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr6_+_43140095_43140145	0.0157404	SOX3_SOX2	ENST00000457278.2|SRF|ENSG00000112658.6|serum response factor (c-fos serum response element-binding transcription factor)
hg19_v2_chr5_+_175792459_175792513	0.0157172	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr20_+_60697480_60697583	0.0156711	SOX3_SOX2	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr20_-_49547910_49547988	0.015657	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr8_+_68864330_68864361	0.0156326	SOX3_SOX2	ENST00000288368.4|PREX2|ENSG00000046889.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
hg19_v2_chr8_+_86121448_86121494	0.0155836	SOX3_SOX2	ENST00000520225.1|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr1_-_115300592_115300648	0.0155653	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr2_+_181845074_181845118	0.0155652	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr14_-_103989033_103989176	0.0155441	SOX3_SOX2	ENST00000553878.1|CKB|ENSG00000166165.8|creatine kinase, brain 	ENST00000557530.1|CKB|ENSG00000166165.8|creatine kinase, brain
hg19_v2_chr12_-_11339543_11339543	0.0154813	SOX3_SOX2	ENST00000334266.1|TAS2R42|ENSG00000186136.1|taste receptor, type 2, member 42
hg19_v2_chrX_-_24690771_24690794	0.0154795	SOX3_SOX2	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr8_+_9009296_9009313	0.0154558	SOX3_SOX2	ENST00000521718.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr17_-_36831156_36831187	0.0154376	SOX3_SOX2	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr12_-_45270077_45270143	0.0153816	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr10_-_97321112_97321163	0.0153707	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr18_+_3448455_3448497	0.0153606	SOX3_SOX2	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr3_-_195270162_195270209	0.0153159	SOX3_SOX2	ENST00000438848.1|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2 	ENST00000328432.3|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2
hg19_v2_chr3_+_20081515_20081570	0.0152973	SOX3_SOX2	ENST00000263754.4|KAT2B|ENSG00000114166.7|K(lysine) acetyltransferase 2B
hg19_v2_chr16_-_19533404_19533467	0.0152422	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr12_-_15942503_15942514	0.0152324	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr10_-_61900762_61900779	0.0152311	SOX3_SOX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr7_-_150779995_150780319	0.0151737	SOX3_SOX2	ENST00000462940.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000492838.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000392818.3|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000488752.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1 	ENST00000476627.1|TMUB1|ENSG00000164897.8|transmembrane and ubiquitin-like domain containing 1
hg19_v2_chr3_+_149535022_149535031	0.0151689	SOX3_SOX2	ENST00000466795.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr19_-_5903714_5903809	0.0151679	SOX3_SOX2	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr19_+_19303720_19303783	0.015112	SOX3_SOX2	ENST00000392324.4|RFXANK|ENSG00000064490.9|regulatory factor X-associated ankyrin-containing protein
hg19_v2_chr22_+_20105012_20105085	0.0150347	SOX3_SOX2	ENST00000331821.3|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000411892.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr2_+_71295733_71295752	0.0150169	SOX3_SOX2	ENST00000443938.2|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase 	ENST00000244204.6|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr7_-_149158187_149158214	0.0149638	SOX3_SOX2	ENST00000247930.4|ZNF777|ENSG00000196453.7|zinc finger protein 777
hg19_v2_chr18_+_32820990_32821031	0.0149099	SOX3_SOX2	ENST00000601719.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000591206.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000330501.7|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000261333.6|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000355632.4|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000585800.1|ZNF397|ENSG00000186812.8|zinc finger protein 397
hg19_v2_chr12_+_48722763_48722763	0.0148635	SOX3_SOX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr9_-_103115135_103115183	0.0148586	SOX3_SOX2	ENST00000537512.1|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr19_+_42041860_42041936	0.0148345	SOX3_SOX2	ENST00000483481.2|AC006129.4|ENSG00000270164.1|AC006129.4	ENST00000494375.2|AC006129.4|ENSG00000270164.1|AC006129.4
hg19_v2_chr14_+_32546145_32546239	0.0148325	SOX3_SOX2	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr16_-_30546141_30546240	0.0147601	SOX3_SOX2	ENST00000535210.1|ZNF747|ENSG00000169955.6|zinc finger protein 747 	ENST00000395094.3|ZNF747|ENSG00000169955.6|zinc finger protein 747
hg19_v2_chr10_-_104262426_104262437	0.0147439	SOX3_SOX2	ENST00000487599.1|ACTR1A|ENSG00000138107.7|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
hg19_v2_chr1_-_156023580_156023605	0.0147195	SOX3_SOX2	ENST00000368309.3|UBQLN4|ENSG00000160803.7|ubiquilin 4
hg19_v2_chr2_-_190649082_190649102	0.0147093	SOX3_SOX2	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr2_-_227050079_227050093	0.0147022	SOX3_SOX2	ENST00000423838.1|AC068138.1|ENSG00000235070.3|AC068138.1
hg19_v2_chr19_+_56652556_56652641	0.0146751	SOX3_SOX2	ENST00000337080.3|ZNF444|ENSG00000167685.10|zinc finger protein 444
hg19_v2_chr9_+_70971815_70971841	0.014673	SOX3_SOX2	ENST00000396392.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5 	ENST00000396396.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5
hg19_v2_chr3_+_3841108_3841126	0.0146408	SOX3_SOX2	ENST00000319331.3|LRRN1|ENSG00000175928.5|leucine rich repeat neuronal 1
hg19_v2_chr17_+_79761997_79762034	0.0146342	SOX3_SOX2	ENST00000400723.3|GCGR|ENSG00000215644.5|glucagon receptor 	ENST00000570996.1|GCGR|ENSG00000215644.5|glucagon receptor
hg19_v2_chr5_-_74062930_74062980	0.014634	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr2_-_231825668_231825781	0.0145763	SOX3_SOX2	ENST00000392039.2|GPR55|ENSG00000135898.5|G protein-coupled receptor 55
hg19_v2_chr7_-_148581251_148581347	0.0145739	SOX3_SOX2	ENST00000478654.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000460911.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000350995.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr4_+_156680143_156680152	0.014556	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr9_+_125486269_125486269	0.0145368	SOX3_SOX2	ENST00000259466.1|OR1L4|ENSG00000136939.1|olfactory receptor, family 1, subfamily L, member 4
hg19_v2_chr11_+_111807863_111807937	0.0145191	SOX3_SOX2	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr17_-_48072574_48072597	0.0145173	SOX3_SOX2	ENST00000434704.2|DLX3|ENSG00000064195.7|distal-less homeobox 3
hg19_v2_chr7_-_105319536_105319611	0.0145108	SOX3_SOX2	ENST00000477775.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr8_+_95653373_95653415	0.0144939	SOX3_SOX2	ENST00000358397.5|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr7_+_29234375_29234558	0.0144204	SOX3_SOX2	ENST00000409350.1|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000495789.2|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000539389.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr4_-_48908737_48908799	0.0143922	SOX3_SOX2	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr8_+_104831472_104831510	0.0143805	SOX3_SOX2	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr5_-_157079428_157079452	0.0143249	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr11_-_1016149_1016156	0.0142725	SOX3_SOX2	ENST00000532016.1|MUC6|ENSG00000184956.11|mucin 6, oligomeric mucus/gel-forming
hg19_v2_chr13_-_110959478_110959511	0.014218	SOX3_SOX2	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chrM_+_4431_4475	0.0142168	SOX3_SOX2	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr12_-_100378006_100378049	0.0142043	SOX3_SOX2	ENST00000547776.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000329257.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000547010.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr1_+_212475148_212475207	0.0141776	SOX3_SOX2	ENST00000537030.3|PPP2R5A|ENSG00000066027.7|protein phosphatase 2, regulatory subunit B', alpha
hg19_v2_chr6_-_2972075_2972090	0.014165	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr2_-_61765315_61765422	0.0141542	SOX3_SOX2	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr20_+_58179582_58179603	0.0141521	SOX3_SOX2	ENST00000371015.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3 	ENST00000395639.4|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr9_-_116061476_116061476	0.0141239	SOX3_SOX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr18_+_55018044_55018044	0.0141008	SOX3_SOX2	ENST00000324000.3|ST8SIA3|ENSG00000177511.5|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
hg19_v2_chr22_+_38864041_38864150	0.0140773	SOX3_SOX2	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr3_+_100211412_100211504	0.0140722	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr7_+_12726474_12726542	0.0140539	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr1_-_116311402_116311413	0.0140247	SOX3_SOX2	ENST00000261448.5|CASQ2|ENSG00000118729.10|calsequestrin 2 (cardiac muscle)
hg19_v2_chr19_+_42041537_42041547	0.0140091	SOX3_SOX2	ENST00000597199.1|AC006129.4|ENSG00000270164.1|AC006129.4
hg19_v2_chr9_-_140196703_140196744	0.0139757	SOX3_SOX2	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr9_-_35111420_35111455	0.0139609	SOX3_SOX2	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr7_+_128312346_128312371	0.013948	SOX3_SOX2	ENST00000480462.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000378704.3|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000477515.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2
hg19_v2_chr4_+_144312659_144312668	0.0138102	SOX3_SOX2	ENST00000509992.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr5_-_157079372_157079395	0.0137989	SOX3_SOX2	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr3_-_188665428_188665478	0.0137689	SOX3_SOX2	ENST00000444488.1|TPRG1-AS1|ENSG00000234076.1|TPRG1 antisense RNA 1
hg19_v2_chr6_-_139613269_139613280	0.0137679	SOX3_SOX2	ENST00000358430.3|TXLNB|ENSG00000164440.10|taxilin beta
hg19_v2_chr9_+_96846740_96846767	0.0137656	SOX3_SOX2	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr17_-_37353950_37353961	0.0137645	SOX3_SOX2	ENST00000394310.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000394303.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000344140.5|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit
hg19_v2_chr17_-_74639730_74639811	0.0137471	SOX3_SOX2	ENST00000589992.1|ST6GALNAC1|ENSG00000070526.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
hg19_v2_chr12_-_8815215_8815298	0.013734	SOX3_SOX2	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr2_-_233352531_233352550	0.0137183	SOX3_SOX2	ENST00000304546.1|ECEL1|ENSG00000171551.7|endothelin converting enzyme-like 1
hg19_v2_chr10_+_24497704_24497743	0.0137135	SOX3_SOX2	ENST00000376456.4|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000458595.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr11_-_117667806_117667976	0.0135418	SOX3_SOX2	ENST00000527706.1|DSCAML1|ENSG00000177103.9|Down syndrome cell adhesion molecule like 1 	ENST00000321322.6|DSCAML1|ENSG00000177103.9|Down syndrome cell adhesion molecule like 1
hg19_v2_chr19_-_38743878_38743928	0.0135197	SOX3_SOX2	ENST00000587515.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr3_+_43328004_43328095	0.0135119	SOX3_SOX2	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr6_+_155538093_155538109	0.0134614	SOX3_SOX2	ENST00000462408.2|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr13_-_31038370_31038509	0.0134553	SOX3_SOX2	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr8_-_101964738_101964780	0.0134347	SOX3_SOX2	ENST00000523938.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr13_-_49975632_49975735	0.0134115	SOX3_SOX2	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr12_-_93836028_93836039	0.0133883	SOX3_SOX2	ENST00000318066.2|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr3_+_46618727_46618745	0.0133826	SOX3_SOX2	ENST00000296145.5|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr2_+_168149569_168149681	0.0133546	SOX3_SOX2	ENST00000442316.1|AC074363.1|ENSG00000228222.1|AC074363.1
hg19_v2_chr15_-_59225758_59225837	0.0133309	SOX3_SOX2	ENST00000558486.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000560682.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000249736.7|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000559880.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000536328.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator
hg19_v2_chrX_-_72434628_72434722	0.0133256	SOX3_SOX2	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chrX_+_36053908_36053908	0.0132897	SOX3_SOX2	ENST00000378660.2|CHDC2|ENSG00000176034.8|calponin homology domain containing 2
hg19_v2_chr5_+_121647764_121647876	0.0132804	SOX3_SOX2	ENST00000261368.8|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379533.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379536.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379538.3|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr3_-_149688655_149688737	0.0132341	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr8_+_9009202_9009252	0.0132268	SOX3_SOX2	ENST00000518496.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr1_-_201123546_201123581	0.0132162	SOX3_SOX2	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr11_-_57417367_57417401	0.0132034	SOX3_SOX2	ENST00000534810.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chrX_+_114827818_114827842	0.0131985	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr22_+_27053567_27053585	0.0130715	SOX3_SOX2	ENST00000449717.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000453023.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr19_-_12992274_12992332	0.0129844	SOX3_SOX2	ENST00000592506.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal 	ENST00000222219.3|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chr2_+_179059365_179059376	0.0129521	SOX3_SOX2	ENST00000190611.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr19_+_45204630_45204630	0.0129463	SOX3_SOX2	ENST00000405314.2|CEACAM16|ENSG00000213892.6|carcinoembryonic antigen-related cell adhesion molecule 16
hg19_v2_chrX_-_16730688_16730814	0.0129267	SOX3_SOX2	ENST00000359276.4|CTPS2|ENSG00000047230.10|CTP synthase 2
hg19_v2_chr2_+_69240302_69240332	0.0128646	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr8_-_22550815_22550844	0.0128191	SOX3_SOX2	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr13_+_111855399_111855413	0.0127859	SOX3_SOX2	ENST00000426768.2|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr11_-_64545941_64545958	0.012734	SOX3_SOX2	ENST00000377387.1|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr10_+_71444655_71444655	0.0127178	SOX3_SOX2	ENST00000434931.2|RP11-242G20.1|ENSG00000235645.2|Uncharacterized protein
hg19_v2_chr3_-_71294304_71294332	0.0127106	SOX3_SOX2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr19_-_20150014_20150085	0.0127045	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr3_-_114173530_114173571	0.0126683	SOX3_SOX2	ENST00000470311.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr5_+_179921430_179921461	0.0126195	SOX3_SOX2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr6_+_30875955_30876012	0.0125387	SOX3_SOX2	ENST00000259895.4|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa 	ENST00000539324.1|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa 	ENST00000376316.2|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa 	ENST00000453897.2|GTF2H4|ENSG00000213780.6|general transcription factor IIH, polypeptide 4, 52kDa
hg19_v2_chr7_-_23571586_23571660	0.012465	SOX3_SOX2	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chr9_+_112403059_112403079	0.0124529	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr5_+_140800638_140800795	0.0124397	SOX3_SOX2	ENST00000398587.2|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11 	ENST00000518882.1|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11
hg19_v2_chr16_-_75299884_75299919	0.0123988	SOX3_SOX2	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr17_+_8339164_8339186	0.0123725	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr6_-_167040693_167040725	0.0123477	SOX3_SOX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr19_-_47164386_47164456	0.0123471	SOX3_SOX2	ENST00000391916.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3 	ENST00000410105.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr17_-_49337392_49337465	0.0122465	SOX3_SOX2	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr7_+_148844516_148844577	0.0122195	SOX3_SOX2	ENST00000420008.2|ZNF398|ENSG00000197024.4|zinc finger protein 398 	ENST00000475153.1|ZNF398|ENSG00000197024.4|zinc finger protein 398
hg19_v2_chr16_-_20339123_20339130	0.0121984	SOX3_SOX2	ENST00000381360.5|GP2|ENSG00000169347.12|glycoprotein 2 (zymogen granule membrane)
hg19_v2_chr3_+_31574189_31574282	0.0121387	SOX3_SOX2	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr9_+_6716478_6716551	0.0121347	SOX3_SOX2	ENST00000452643.1|RP11-390F4.3|ENSG00000225489.2|RP11-390F4.3
hg19_v2_chr11_+_44117741_44117798	0.0121305	SOX3_SOX2	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr7_-_105516923_105516982	0.0120379	SOX3_SOX2	ENST00000478915.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr16_+_57673348_57673410	0.0119929	SOX3_SOX2	ENST00000567915.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000564103.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562467.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr12_-_45270151_45270162	0.0119689	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr2_+_220492287_220492338	0.0119283	SOX3_SOX2	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr19_+_10982189_10982272	0.0119252	SOX3_SOX2	ENST00000327064.4|CARM1|ENSG00000142453.7|coactivator-associated arginine methyltransferase 1 	ENST00000588947.1|CARM1|ENSG00000142453.7|coactivator-associated arginine methyltransferase 1
hg19_v2_chr16_-_74455290_74455290	0.0119203	SOX3_SOX2	ENST00000339953.5|CLEC18B|ENSG00000140839.7|C-type lectin domain family 18, member B
hg19_v2_chr7_+_12726623_12726750	0.0119041	SOX3_SOX2	ENST00000439721.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr6_+_42531798_42531810	0.011863	SOX3_SOX2	ENST00000372903.2|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372899.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372901.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chr1_-_156722015_156722034	0.0118488	SOX3_SOX2	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr3_-_185655795_185655924	0.0118357	SOX3_SOX2	ENST00000342294.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000382191.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000453386.2|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr17_-_17184605_17184622	0.0118283	SOX3_SOX2	ENST00000268717.5|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr12_+_109915179_109915220	0.0118111	SOX3_SOX2	ENST00000434735.2|UBE3B|ENSG00000151148.9|ubiquitin protein ligase E3B
hg19_v2_chr9_+_133710453_133710453	0.0118097	SOX3_SOX2	ENST00000318560.5|ABL1|ENSG00000097007.13|c-abl oncogene 1, non-receptor tyrosine kinase
hg19_v2_chr16_-_18911366_18911366	0.0117729	SOX3_SOX2	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr21_-_32931290_32931341	0.011772	SOX3_SOX2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr4_-_143226979_143226990	0.011771	SOX3_SOX2	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr3_+_134514093_134514169	0.0117486	SOX3_SOX2	ENST00000398015.3|EPHB1|ENSG00000154928.12|EPH receptor B1
hg19_v2_chr2_-_9770706_9770753	0.0117178	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr14_-_23446900_23446946	0.0116709	SOX3_SOX2	ENST00000556731.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr17_+_76037081_76037128	0.0116514	SOX3_SOX2	ENST00000588549.1|TNRC6C|ENSG00000078687.12|trinucleotide repeat containing 6C
hg19_v2_chr8_+_23104130_23104184	0.0116506	SOX3_SOX2	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr10_+_71562180_71562291	0.0116073	SOX3_SOX2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr12_-_46384334_46384367	0.0116019	SOX3_SOX2	ENST00000369367.3|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000266589.6|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395453.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395454.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11
hg19_v2_chr10_-_18948208_18948219	0.0114979	SOX3_SOX2	ENST00000607346.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr8_-_101965146_101965236	0.0114713	SOX3_SOX2	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr14_-_24020858_24020988	0.0114703	SOX3_SOX2	ENST00000419474.3|ZFHX2|ENSG00000136367.12|zinc finger homeobox 2
hg19_v2_chr14_+_71108460_71108508	0.0114509	SOX3_SOX2	ENST00000256367.2|TTC9|ENSG00000133985.2|tetratricopeptide repeat domain 9
hg19_v2_chr19_-_58400372_58400411	0.0114199	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr3_+_15643245_15643318	0.0114026	SOX3_SOX2	ENST00000303498.5|BTD|ENSG00000169814.8|biotinidase 	ENST00000437172.1|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr5_+_66300446_66300463	0.0113941	SOX3_SOX2	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr3_-_129407535_129407575	0.0113723	SOX3_SOX2	ENST00000432054.2|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr11_-_18548426_18548500	0.0113349	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr1_+_70687079_70687108	0.0112789	SOX3_SOX2	ENST00000395136.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr3_-_149688896_149688970	0.0112779	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chrY_-_15591818_15591919	0.0112608	SOX3_SOX2	ENST00000382893.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
hg19_v2_chr15_+_80215477_80215546	0.0112428	SOX3_SOX2	ENST00000542003.1|C15ORF37|ENSG00000257028.1|C15orf37 protein; Uncharacterized protein
hg19_v2_chr17_-_17740325_17740349	0.0112138	SOX3_SOX2	ENST00000338854.5|SREBF1|ENSG00000072310.12|sterol regulatory element binding transcription factor 1
hg19_v2_chr12_-_122296755_122296770	0.0111898	SOX3_SOX2	ENST00000289004.4|HPD|ENSG00000158104.7|4-hydroxyphenylpyruvate dioxygenase
hg19_v2_chr4_-_144940477_144940541	0.0111753	SOX3_SOX2	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr1_-_235292250_235292261	0.0111195	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr11_+_120081475_120081488	0.0111052	SOX3_SOX2	ENST00000328965.4|OAF|ENSG00000184232.4|OAF homolog (Drosophila)
hg19_v2_chr9_+_90112741_90112761	0.0111013	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chrX_-_119603138_119603220	0.0110836	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr6_-_160210715_160210781	0.0110779	SOX3_SOX2	ENST00000392168.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000321394.7|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr4_-_48908822_48908845	0.0109165	SOX3_SOX2	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr5_+_74062806_74062840	0.0109114	SOX3_SOX2	ENST00000296802.5|NSA2|ENSG00000164346.5|NSA2 ribosome biogenesis homolog (S. cerevisiae)
hg19_v2_chr4_-_174451370_174451387	0.0109072	SOX3_SOX2	ENST00000359562.4|HAND2|ENSG00000164107.7|heart and neural crest derivatives expressed 2
hg19_v2_chr11_+_236959_237015	0.0108762	SOX3_SOX2	ENST00000431206.2|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENST00000528906.1|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr17_+_30814707_30814814	0.0108746	SOX3_SOX2	ENST00000584792.1|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr20_+_11898507_11898565	0.0108681	SOX3_SOX2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr3_-_52002403_52002433	0.0108376	SOX3_SOX2	ENST00000490063.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000468324.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000497653.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000484633.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chrX_-_73834449_73834481	0.0108183	SOX3_SOX2	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr2_+_9346892_9346948	0.010799	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr2_+_192110199_192110254	0.0107963	SOX3_SOX2	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr8_+_21777243_21777275	0.0107654	SOX3_SOX2	ENST00000521303.1|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr6_-_31509506_31509544	0.0107434	SOX3_SOX2	ENST00000449757.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr20_+_44036620_44036658	0.010718	SOX3_SOX2	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr2_+_228336849_228336904	0.0107086	SOX3_SOX2	ENST00000409979.2|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000310078.8|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr19_+_8455077_8455083	0.0106992	SOX3_SOX2	ENST00000328024.6|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr17_+_80416050_80416235	0.0106478	SOX3_SOX2	ENST00000579198.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000390006.4|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000580296.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr1_+_32666188_32666274	0.010599	SOX3_SOX2	ENST00000421922.2|CCDC28B|ENSG00000160050.10|coiled-coil domain containing 28B
hg19_v2_chr1_+_174846570_174846584	0.0105937	SOX3_SOX2	ENST00000392064.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr12_+_133656995_133657060	0.0105782	SOX3_SOX2	ENST00000356456.5|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr1_-_17307173_17307330	0.0105765	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr12_+_104337515_104337574	0.0105749	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr12_-_104350898_104351051	0.0105749	SOX3_SOX2	ENST00000552940.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547975.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000549478.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546540.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546819.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000378090.4|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547945.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr12_-_117628253_117628308	0.0105688	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr1_+_24286287_24286326	0.0105509	SOX3_SOX2	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr18_-_61311485_61311532	0.0105507	SOX3_SOX2	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr12_-_6772249_6772297	0.0105142	SOX3_SOX2	ENST00000467678.1|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000493873.1|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000423703.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000412586.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000444704.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr4_-_87770416_87770508	0.0104976	SOX3_SOX2	ENST00000273905.6|SLC10A6|ENSG00000145283.7|solute carrier family 10 (sodium/bile acid cotransporter), member 6
hg19_v2_chr13_+_111767650_111767874	0.010479	SOX3_SOX2	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr6_+_123317116_123317260	0.0104648	SOX3_SOX2	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr7_-_32931387_32931509	0.0104425	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr3_-_64009658_64009687	0.0104364	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr3_+_15643476_15643557	0.0103845	SOX3_SOX2	ENST00000436193.1|BTD|ENSG00000169814.8|biotinidase 	ENST00000383778.4|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr19_-_35323762_35323779	0.0103756	SOX3_SOX2	ENST00000590963.1|CTC-523E23.4|ENSG00000267767.2|CTC-523E23.4
hg19_v2_chr18_-_64271316_64271334	0.0103491	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr1_-_155243235_155243307	0.0103467	SOX3_SOX2	ENST00000355560.4|CLK2|ENSG00000176444.14|CDC-like kinase 2 	ENST00000368361.4|CLK2|ENSG00000176444.14|CDC-like kinase 2
hg19_v2_chr20_-_50418947_50418964	0.0103407	SOX3_SOX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr22_-_31536480_31536593	0.010336	SOX3_SOX2	ENST00000215885.3|PLA2G3|ENSG00000100078.3|phospholipase A2, group III
hg19_v2_chr5_-_150521192_150521229	0.0103286	SOX3_SOX2	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chr20_+_62716348_62716369	0.0103025	SOX3_SOX2	ENST00000349451.3|OPRL1|ENSG00000125510.11|opiate receptor-like 1
hg19_v2_chr12_-_8815299_8815331	0.0102996	SOX3_SOX2	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr3_-_196987309_196987350	0.0102765	SOX3_SOX2	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr1_-_1334685_1334722	0.0102022	SOX3_SOX2	ENST00000400809.3|CCNL2|ENSG00000221978.7|cyclin L2 	ENST00000408918.4|CCNL2|ENSG00000221978.7|cyclin L2
hg19_v2_chr2_+_208576355_208576475	0.0101814	SOX3_SOX2	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr12_-_50294033_50294044	0.0100091	SOX3_SOX2	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr14_-_25519317_25519503	0.00999533	SOX3_SOX2	ENST00000323944.5|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr4_+_106629929_106629982	0.00995846	SOX3_SOX2	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr1_+_41174988_41175047	0.00987235	SOX3_SOX2	ENST00000372652.1|NFYC|ENSG00000066136.15|nuclear transcription factor Y, gamma
hg19_v2_chr9_+_132388423_132388484	0.00987059	SOX3_SOX2	ENST00000372483.4|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000459968.2|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000482347.1|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENST00000372481.3|NTMT1|ENSG00000148335.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1
hg19_v2_chr9_-_74525847_74525847	0.00986933	SOX3_SOX2	ENST00000377041.2|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr6_+_18387570_18387588	0.00984053	SOX3_SOX2	ENST00000259939.3|RNF144B|ENSG00000137393.8|ring finger protein 144B
hg19_v2_chr4_-_185729602_185729613	0.00982555	SOX3_SOX2	ENST00000437665.3|ACSL1|ENSG00000151726.9|acyl-CoA synthetase long-chain family member 1
hg19_v2_chr5_+_148521454_148521610	0.00981503	SOX3_SOX2	ENST00000508983.1|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3
hg19_v2_chr17_-_49124230_49124248	0.0098113	SOX3_SOX2	ENST00000510283.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000510855.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chrX_-_128657457_128657477	0.00978666	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr19_-_20150252_20150298	0.00978509	SOX3_SOX2	ENST00000595736.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000593468.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000596019.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr12_-_92539614_92539673	0.00974531	SOX3_SOX2	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr6_+_84569359_84569445	0.00973634	SOX3_SOX2	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr5_+_140248518_140248689	0.00970688	SOX3_SOX2	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr2_+_201981663_201981762	0.00970118	SOX3_SOX2	ENST00000433445.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr2_-_237150258_237150258	0.00968993	SOX3_SOX2	ENST00000330842.6|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18
hg19_v2_chr6_-_33385655_33385719	0.00968817	SOX3_SOX2	ENST00000440279.3|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli) 	ENST00000607266.1|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli)
hg19_v2_chr22_-_17640110_17640185	0.00967778	SOX3_SOX2	ENST00000399852.3|CECR5|ENSG00000069998.8|cat eye syndrome chromosome region, candidate 5 	ENST00000336737.4|CECR5|ENSG00000069998.8|cat eye syndrome chromosome region, candidate 5
hg19_v2_chrX_+_46306624_46306709	0.00967616	SOX3_SOX2	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr13_+_98795434_98795480	0.00966224	SOX3_SOX2	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr2_-_232328867_232328921	0.00961807	SOX3_SOX2	ENST00000453992.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000417652.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000454824.1|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr22_-_39151947_39151994	0.00960671	SOX3_SOX2	ENST00000216064.4|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr10_+_93683519_93683594	0.00954454	SOX3_SOX2	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr7_-_130353553_130353598	0.00950255	SOX3_SOX2	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr13_-_27334879_27334930	0.00950038	SOX3_SOX2	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr12_+_93963590_93963628	0.0094731	SOX3_SOX2	ENST00000340600.2|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr10_+_11047259_11047351	0.00942733	SOX3_SOX2	ENST00000379261.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000416382.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr2_-_224467002_224467085	0.00939944	SOX3_SOX2	ENST00000421386.1|SCG2|ENSG00000171951.4|secretogranin II 	ENST00000433889.1|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr16_-_75529273_75529293	0.00938885	SOX3_SOX2	ENST00000390664.2|CHST6|ENSG00000183196.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
hg19_v2_chr8_-_94752946_94753008	0.0093802	SOX3_SOX2	ENST00000519109.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr4_-_109090106_109090124	0.00937653	SOX3_SOX2	ENST00000379951.2|LEF1|ENSG00000138795.5|lymphoid enhancer-binding factor 1
hg19_v2_chr11_-_46141338_46141418	0.00936295	SOX3_SOX2	ENST00000529782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000532010.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000525438.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000533757.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000527782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr11_+_4673716_4673716	0.00935588	SOX3_SOX2	ENST00000530215.1|OR51E1|ENSG00000180785.8|olfactory receptor, family 51, subfamily E, member 1
hg19_v2_chr11_+_1411503_1411521	0.009313	SOX3_SOX2	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr7_-_135433460_135433499	0.00929432	SOX3_SOX2	ENST00000415751.1|FAM180A|ENSG00000189320.4|family with sequence similarity 180, member A
hg19_v2_chr8_-_6420759_6420775	0.00926048	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr4_-_10459009_10459061	0.00925177	SOX3_SOX2	ENST00000507515.1|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr16_+_89989687_89989774	0.00923302	SOX3_SOX2	ENST00000315491.7|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000555576.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000554336.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000553967.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr10_-_105845674_105845760	0.00917883	SOX3_SOX2	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr14_+_23340822_23341004	0.00916365	SOX3_SOX2	ENST00000359591.4|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr13_+_111855414_111855417	0.00915524	SOX3_SOX2	ENST00000375737.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr6_-_109777128_109777203	0.00914432	SOX3_SOX2	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr1_-_156722195_156722246	0.00914311	SOX3_SOX2	ENST00000368206.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr6_-_108582168_108582256	0.00914014	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chrX_+_107288197_107288212	0.0091116	SOX3_SOX2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr7_+_87563557_87563735	0.00910849	SOX3_SOX2	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr1_-_169555779_169555826	0.0090968	SOX3_SOX2	ENST00000367797.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor) 	ENST00000367796.3|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chr11_-_62369291_62369351	0.00909066	SOX3_SOX2	ENST00000278823.2|MTA2|ENSG00000149480.2|metastasis associated 1 family, member 2
hg19_v2_chr3_-_64009102_64009236	0.0090635	SOX3_SOX2	ENST00000478185.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000482510.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000497323.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000492933.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000295901.4|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr9_-_36401155_36401219	0.00906106	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chrX_+_101470280_101470280	0.00905478	SOX3_SOX2	ENST00000395088.2|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000330252.5|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000333110.5|TCP11X1|ENSG00000215046.4|t-complex 11 family, X-linked 1
hg19_v2_chr14_-_104029013_104029168	0.00903207	SOX3_SOX2	ENST00000299204.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000557666.1|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr3_+_50192537_50192563	0.00901311	SOX3_SOX2	ENST00000002829.3|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr12_-_25055177_25055258	0.0090085	SOX3_SOX2	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr4_-_1202611_1202644	0.00900737	SOX3_SOX2	ENST00000511679.1|SPON2|ENSG00000159674.7|spondin 2, extracellular matrix protein
hg19_v2_chr12_-_56615693_56615758	0.00898189	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr18_+_3449821_3450034	0.00896323	SOX3_SOX2	ENST00000407501.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000405385.3|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000546979.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr22_-_31688381_31688418	0.00894851	SOX3_SOX2	ENST00000487265.2|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr15_-_43398274_43398318	0.00894849	SOX3_SOX2	ENST00000382177.2|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1 	ENST00000290650.4|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1
hg19_v2_chr4_-_74088800_74088844	0.00894786	SOX3_SOX2	ENST00000509867.2|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr5_-_16742330_16742344	0.0089462	SOX3_SOX2	ENST00000505695.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000427430.2|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr9_-_130966497_130966662	0.00888591	SOX3_SOX2	ENST00000393608.1|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1 	ENST00000372948.3|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1
hg19_v2_chr16_-_48281444_48281479	0.0088815	SOX3_SOX2	ENST00000537808.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11 	ENST00000569991.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr17_-_42276574_42276742	0.00886762	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr12_-_122712038_122712081	0.00885603	SOX3_SOX2	ENST00000413918.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein 	ENST00000443649.3|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr10_+_30722866_30722969	0.00880943	SOX3_SOX2	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr6_+_134758827_134758863	0.00880014	SOX3_SOX2	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr4_-_186877502_186877563	0.00875171	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr11_+_10772534_10772573	0.00873918	SOX3_SOX2	ENST00000361367.2|CTR9|ENSG00000198730.3|CTR9, Paf1/RNA polymerase II complex component
hg19_v2_chr7_-_151330218_151330259	0.00872203	SOX3_SOX2	ENST00000476632.1|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr14_-_69619823_69619879	0.00866199	SOX3_SOX2	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr8_+_95653427_95653460	0.00860276	SOX3_SOX2	ENST00000454170.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr6_-_127664475_127664543	0.00858711	SOX3_SOX2	ENST00000474289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000534442.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000368289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000525745.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000430841.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr7_+_29186174_29186188	0.00858469	SOX3_SOX2	ENST00000439384.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr2_-_166060571_166060582	0.00856392	SOX3_SOX2	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr17_+_44803922_44803922	0.00854396	SOX3_SOX2	ENST00000465370.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr4_-_100484825_100484901	0.00852839	SOX3_SOX2	ENST00000273962.3|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000514547.1|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000455368.2|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae)
hg19_v2_chr4_+_113970772_113970885	0.00852391	SOX3_SOX2	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr6_-_112115103_112115122	0.00850901	SOX3_SOX2	ENST00000462598.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr20_+_3869423_3869486	0.00850403	SOX3_SOX2	ENST00000497424.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr17_+_73452695_73452744	0.00844912	SOX3_SOX2	ENST00000582186.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000582455.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000581252.1|KIAA0195|ENSG00000177728.10|KIAA0195 	ENST00000579208.1|KIAA0195|ENSG00000177728.10|KIAA0195
hg19_v2_chr8_+_134125727_134125747	0.00841118	SOX3_SOX2	ENST00000521107.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr12_+_69979446_69979471	0.00841054	SOX3_SOX2	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr3_+_130613001_130613078	0.00840802	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr12_-_8815477_8815490	0.00840012	SOX3_SOX2	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr13_-_107220455_107220517	0.00836043	SOX3_SOX2	ENST00000400198.3|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr16_+_32264645_32264662	0.00833158	SOX3_SOX2	ENST00000569631.1|TP53TG3D|ENSG00000205456.7|TP53 target 3D 	ENST00000354614.3|TP53TG3D|ENSG00000205456.7|TP53 target 3D
hg19_v2_chr9_-_119162885_119162885	0.00831927	SOX3_SOX2	ENST00000445861.2|PAPPA-AS1|ENSG00000256040.1|PAPPA antisense RNA 1
hg19_v2_chr3_-_49459865_49459876	0.0082852	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr2_-_180129484_180129574	0.00823823	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr6_+_10634158_10634158	0.0082357	SOX3_SOX2	ENST00000379591.3|GCNT6|ENSG00000205318.3|glucosaminyl (N-acetyl) transferase 6
hg19_v2_chr11_-_92930556_92930621	0.00818235	SOX3_SOX2	ENST00000529184.1|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr6_-_6711235_6711379	0.00815487	SOX3_SOX2	ENST00000432823.2|RP1-80N2.2|ENSG00000226281.2|RP1-80N2.2
hg19_v2_chr6_-_167040731_167040745	0.00812814	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr16_+_57653596_57653610	0.00812517	SOX3_SOX2	ENST00000568791.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000570044.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr16_+_67195592_67195762	0.0081222	SOX3_SOX2	ENST00000519378.1|FBXL8|ENSG00000135722.4|F-box and leucine-rich repeat protein 8
hg19_v2_chr11_-_71752838_71752915	0.00807192	SOX3_SOX2	ENST00000537930.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr4_-_157892167_157892228	0.00805682	SOX3_SOX2	ENST00000541126.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr14_+_100259666_100259685	0.00801751	SOX3_SOX2	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr16_+_1359511_1359804	0.00801344	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chrX_+_47093171_47093230	0.00798614	SOX3_SOX2	ENST00000377078.2|USP11|ENSG00000102226.5|ubiquitin specific peptidase 11
hg19_v2_chr2_-_232329186_232329305	0.00793973	SOX3_SOX2	ENST00000322723.4|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr15_-_60771128_60771277	0.00793709	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr8_-_108510224_108510283	0.00790916	SOX3_SOX2	ENST00000517746.1|ANGPT1|ENSG00000154188.5|angiopoietin 1 	ENST00000297450.3|ANGPT1|ENSG00000154188.5|angiopoietin 1
hg19_v2_chr4_+_159727272_159727400	0.00789591	SOX3_SOX2	ENST00000379346.3|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr18_+_7946941_7946952	0.00788749	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr10_+_72164135_72164135	0.00788463	SOX3_SOX2	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr2_+_27070964_27071027	0.00787627	SOX3_SOX2	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr19_-_42498231_42498356	0.00780322	SOX3_SOX2	ENST00000602133.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr6_+_22146851_22146883	0.00778902	SOX3_SOX2	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr10_-_14613968_14614048	0.00777874	SOX3_SOX2	ENST00000488576.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000472095.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr17_-_44270133_44270207	0.00776467	SOX3_SOX2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr9_-_130331297_130331393	0.00768301	SOX3_SOX2	ENST00000373312.3|FAM129B|ENSG00000136830.7|family with sequence similarity 129, member B
hg19_v2_chr10_-_35104185_35104267	0.00763062	SOX3_SOX2	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr2_-_27579842_27579907	0.00761232	SOX3_SOX2	ENST00000423998.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa 	ENST00000264720.3|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr2_+_179316163_179316163	0.00757913	SOX3_SOX2	ENST00000409117.3|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr3_+_50192499_50192534	0.00756749	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr15_+_63796779_63796863	0.00756213	SOX3_SOX2	ENST00000561442.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000560070.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000540797.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000380324.3|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000268049.7|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000536001.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000539772.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3
hg19_v2_chr14_+_58797974_58798011	0.00754587	SOX3_SOX2	ENST00000417477.2|ARID4A|ENSG00000032219.14|AT rich interactive domain 4A (RBP1-like)
hg19_v2_chr17_-_39681578_39681697	0.0075306	SOX3_SOX2	ENST00000593096.1|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr16_+_19222479_19222531	0.00752429	SOX3_SOX2	ENST00000568433.1|SYT17|ENSG00000103528.12|synaptotagmin XVII
hg19_v2_chr6_-_112115074_112115094	0.00751682	SOX3_SOX2	ENST00000368667.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr6_-_127664683_127664718	0.00748047	SOX3_SOX2	ENST00000528402.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454591.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr1_-_65432171_65432252	0.00747378	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr14_+_63671105_63671126	0.00746883	SOX3_SOX2	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr5_-_40835303_40835437	0.00745972	SOX3_SOX2	ENST00000509877.1|RPL37|ENSG00000145592.9|ribosomal protein L37 	ENST00000508493.1|RPL37|ENSG00000145592.9|ribosomal protein L37 	ENST00000274242.5|RPL37|ENSG00000145592.9|ribosomal protein L37
hg19_v2_chr17_-_26926005_26926070	0.00745066	SOX3_SOX2	ENST00000536674.2|SPAG5|ENSG00000076382.12|sperm associated antigen 5
hg19_v2_chr5_-_68339648_68339711	0.00743199	SOX3_SOX2	ENST00000479830.2|CTC-498J12.1|ENSG00000250237.1|CTC-498J12.1
hg19_v2_chr16_+_31191431_31191472	0.00742403	SOX3_SOX2	ENST00000254108.7|FUS|ENSG00000089280.14|fused in sarcoma 	ENST00000380244.3|FUS|ENSG00000089280.14|fused in sarcoma 	ENST00000568685.1|FUS|ENSG00000089280.14|fused in sarcoma
hg19_v2_chr19_+_46010674_46010772	0.00736627	SOX3_SOX2	ENST00000245932.6|VASP|ENSG00000125753.9|vasodilator-stimulated phosphoprotein 	ENST00000592139.1|VASP|ENSG00000125753.9|vasodilator-stimulated phosphoprotein 	ENST00000590603.1|VASP|ENSG00000125753.9|vasodilator-stimulated phosphoprotein
hg19_v2_chr7_+_134464376_134464413	0.00735329	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chrX_-_77041685_77041716	0.00730428	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr22_+_21771656_21771693	0.00727611	SOX3_SOX2	ENST00000407464.2|HIC2|ENSG00000169635.5|hypermethylated in cancer 2
hg19_v2_chr11_-_71752571_71752598	0.0072374	SOX3_SOX2	ENST00000544238.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr7_+_117120106_117120149	0.00723398	SOX3_SOX2	ENST00000426809.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr1_+_160370344_160370406	0.00722375	SOX3_SOX2	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr5_+_65222500_65222601	0.00718698	SOX3_SOX2	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr2_+_113735575_113735606	0.00715405	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr1_+_16085244_16085255	0.00713137	SOX3_SOX2	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chrX_+_51928002_51928017	0.00711819	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr20_-_34252759_34252843	0.00707219	SOX3_SOX2	ENST00000414711.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000416778.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397442.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000440240.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000412056.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000352393.4|CPNE1|ENSG00000214078.7|copine I 	ENST00000359646.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000458038.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000424458.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000420363.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000434795.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374104.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437100.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000414664.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374114.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr13_-_28545276_28545276	0.00701621	SOX3_SOX2	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr3_+_173116225_173116242	0.00699992	SOX3_SOX2	ENST00000457714.1|NLGN1|ENSG00000169760.13|neuroligin 1
hg19_v2_chr16_-_30546275_30546325	0.00695952	SOX3_SOX2	ENST00000568028.1|ZNF747|ENSG00000169955.6|zinc finger protein 747
hg19_v2_chr3_-_88108192_88108203	0.00693986	SOX3_SOX2	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr4_-_53522703_53522757	0.00691818	SOX3_SOX2	ENST00000508499.1|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr19_+_19779619_19779670	0.0069043	SOX3_SOX2	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr11_+_125034640_125034655	0.00687946	SOX3_SOX2	ENST00000542175.1|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr4_-_113558079_113558145	0.00687768	SOX3_SOX2	ENST00000445203.2|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr8_-_116673894_116673913	0.0068509	SOX3_SOX2	ENST00000395713.2|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr2_+_74710194_74710217	0.00683242	SOX3_SOX2	ENST00000410003.1|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31 	ENST00000442235.2|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31 	ENST00000233623.5|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31
hg19_v2_chr19_-_7553889_7553929	0.00674643	SOX3_SOX2	ENST00000221480.1|PEX11G|ENSG00000104883.3|peroxisomal biogenesis factor 11 gamma
hg19_v2_chrX_+_101478829_101478939	0.00672155	SOX3_SOX2	ENST00000372763.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000372758.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2
hg19_v2_chr19_+_11649532_11649674	0.00669786	SOX3_SOX2	ENST00000252456.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000592923.1|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000535659.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle
hg19_v2_chr20_-_43977055_43977073	0.00666461	SOX3_SOX2	ENST00000372733.3|SDC4|ENSG00000124145.5|syndecan 4 	ENST00000537976.1|SDC4|ENSG00000124145.5|syndecan 4
hg19_v2_chr3_+_156008809_156008839	0.00666102	SOX3_SOX2	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chrX_-_71792477_71792720	0.00663891	SOX3_SOX2	ENST00000421523.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000415409.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373559.4|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373556.3|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373560.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373583.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000429103.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373571.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373554.1|HDAC8|ENSG00000147099.15|histone deacetylase 8
hg19_v2_chr14_-_104028595_104028677	0.00658528	SOX3_SOX2	ENST00000337322.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000445922.2|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr7_-_150924121_150924332	0.00654714	SOX3_SOX2	ENST00000441774.1|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000222388.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000287844.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2
hg19_v2_chr3_+_36421826_36421844	0.00654195	SOX3_SOX2	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr18_-_7117813_7117843	0.00651068	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr3_+_44626446_44626477	0.0064559	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr2_-_188430478_188430496	0.0064319	SOX3_SOX2	ENST00000421427.1|TFPI|ENSG00000003436.10|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
hg19_v2_chr12_-_57522813_57522883	0.006413	SOX3_SOX2	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr5_+_121647924_121647940	0.00641035	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr9_+_2622085_2622174	0.00639862	SOX3_SOX2	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr19_+_35606692_35606769	0.00639388	SOX3_SOX2	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr12_-_89919220_89919392	0.00635679	SOX3_SOX2	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr16_+_75033210_75033288	0.00631064	SOX3_SOX2	ENST00000566250.1|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase 	ENST00000567962.1|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr6_-_130536774_130536792	0.00624507	SOX3_SOX2	ENST00000532763.1|SAMD3|ENSG00000164483.12|sterile alpha motif domain containing 3
hg19_v2_chr4_-_143227088_143227105	0.00618283	SOX3_SOX2	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr22_+_25595817_25595840	0.00616017	SOX3_SOX2	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr22_+_44568825_44568837	0.00614257	SOX3_SOX2	ENST00000422871.1|PARVG|ENSG00000138964.12|parvin, gamma
hg19_v2_chr7_+_116593292_116593409	0.00613091	SOX3_SOX2	ENST00000393446.2|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000265437.5|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393451.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr7_-_27142290_27142430	0.00611175	SOX3_SOX2	ENST00000222718.5|HOXA2|ENSG00000105996.5|homeobox A2
hg19_v2_chrX_+_84499081_84499115	0.00608388	SOX3_SOX2	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr3_+_38307313_38307397	0.00607541	SOX3_SOX2	ENST00000450935.2|SLC22A13|ENSG00000172940.7|solute carrier family 22 (organic anion/urate transporter), member 13
hg19_v2_chr4_-_88141755_88141791	0.00607528	SOX3_SOX2	ENST00000273963.5|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr19_-_47349395_47349412	0.00604425	SOX3_SOX2	ENST00000597020.1|AP2S1|ENSG00000042753.7|adaptor-related protein complex 2, sigma 1 subunit
hg19_v2_chr14_+_72052983_72053003	0.00603949	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr6_+_123100853_123100904	0.00594594	SOX3_SOX2	ENST00000356535.4|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr19_+_21264943_21264965	0.00589777	SOX3_SOX2	ENST00000597424.1|ZNF714|ENSG00000160352.11|zinc finger protein 714
hg19_v2_chr15_+_96904487_96904487	0.0058743	SOX3_SOX2	ENST00000600790.1|AC087477.1|ENSG00000268484.1|Uncharacterized protein
hg19_v2_chr12_+_133613878_133613924	0.00586584	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr11_+_63753883_63753929	0.00584358	SOX3_SOX2	ENST00000538426.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1 	ENST00000543004.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr2_-_54197915_54197977	0.00582771	SOX3_SOX2	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr1_+_156119466_156119514	0.00581008	SOX3_SOX2	ENST00000414683.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr3_-_50649192_50649262	0.00578617	SOX3_SOX2	ENST00000443053.2|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein 	ENST00000348721.3|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein
hg19_v2_chr16_-_66519747_66519747	0.00577694	SOX3_SOX2	ENST00000544589.1|AC132186.1|ENSG00000247270.2|CDNA FLJ27243 fis, clone SYN08134; Uncharacterized protein
hg19_v2_chr9_+_134269439_134269506	0.00576001	SOX3_SOX2	ENST00000405995.1|PRRC2B|ENSG00000130723.13|proline-rich coiled-coil 2B
hg19_v2_chr17_+_80416609_80416751	0.0057314	SOX3_SOX2	ENST00000577410.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr1_-_145589424_145589471	0.00572729	SOX3_SOX2	ENST00000334513.5|NUDT17|ENSG00000186364.7|nudix (nucleoside diphosphate linked moiety X)-type motif 17
hg19_v2_chr19_-_12992244_12992272	0.00572253	SOX3_SOX2	ENST00000538460.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chr11_-_82997371_82997416	0.00571403	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr1_-_212004090_212004168	0.00567486	SOX3_SOX2	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr13_-_114843416_114843438	0.00565815	SOX3_SOX2	ENST00000389544.4|RASA3|ENSG00000185989.9|RAS p21 protein activator 3
hg19_v2_chr4_+_184365841_184365861	0.00564747	SOX3_SOX2	ENST00000510928.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr17_-_71258491_71258491	0.00554137	SOX3_SOX2	ENST00000397671.1|CPSF4L|ENSG00000187959.5|cleavage and polyadenylation specific factor 4-like
hg19_v2_chr17_-_7145106_7145172	0.00552105	SOX3_SOX2	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr9_-_35111570_35111600	0.00551409	SOX3_SOX2	ENST00000378561.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B 	ENST00000603301.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr11_-_47206965_47206974	0.00551191	SOX3_SOX2	ENST00000525725.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3
hg19_v2_chr2_+_223536428_223536505	0.00546772	SOX3_SOX2	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr9_+_15422702_15422883	0.00546024	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr7_+_5938351_5938379	0.00545043	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr1_-_113247543_113247770	0.00540688	SOX3_SOX2	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chr17_-_30668887_30668971	0.00538896	SOX3_SOX2	ENST00000581747.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000583334.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000580558.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr6_-_111136299_111136352	0.00534294	SOX3_SOX2	ENST00000457688.1|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr7_-_14942944_14942997	0.00534151	SOX3_SOX2	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr4_+_114214125_114214151	0.00532384	SOX3_SOX2	ENST00000509550.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr12_-_9913489_9913506	0.00530222	SOX3_SOX2	ENST00000228434.3|CD69|ENSG00000110848.4|CD69 molecule 	ENST00000536709.1|CD69|ENSG00000110848.4|CD69 molecule
hg19_v2_chr5_+_172386517_172386523	0.00529768	SOX3_SOX2	ENST00000519522.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr14_-_64971893_64971931	0.00521933	SOX3_SOX2	ENST00000555220.1|ZBTB25|ENSG00000089775.7|zinc finger and BTB domain containing 25
hg19_v2_chr12_-_10251539_10251560	0.00521377	SOX3_SOX2	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr11_-_125351481_125351529	0.00516204	SOX3_SOX2	ENST00000577924.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr6_-_52774464_52774499	0.0050896	SOX3_SOX2	ENST00000370968.1|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3 	ENST00000211122.3|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3
hg19_v2_chr1_-_151431674_151431691	0.00508904	SOX3_SOX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr5_-_176900610_176900742	0.00508403	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr17_-_79520135_79520166	0.00506582	SOX3_SOX2	ENST00000541246.1|C17orf70|ENSG00000185504.12|chromosome 17 open reading frame 70 	ENST00000544302.1|C17orf70|ENSG00000185504.12|chromosome 17 open reading frame 70
hg19_v2_chr13_-_39612176_39612258	0.00503982	SOX3_SOX2	ENST00000352251.3|PROSER1|ENSG00000120685.15|proline and serine rich 1 	ENST00000350125.3|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr6_+_135502501_135502652	0.00503083	SOX3_SOX2	ENST00000527615.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000420123.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000525369.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000528774.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534121.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534044.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000533624.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr14_-_31676674_31676707	0.00502285	SOX3_SOX2	ENST00000399332.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1 	ENST00000556224.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr18_+_28956740_28956846	0.00500104	SOX3_SOX2	ENST00000308128.4|DSG4|ENSG00000175065.7|desmoglein 4 	ENST00000359747.4|DSG4|ENSG00000175065.7|desmoglein 4
hg19_v2_chr4_+_154074217_154074270	0.00499236	SOX3_SOX2	ENST00000437508.2|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr22_+_42372970_42372994	0.00496131	SOX3_SOX2	ENST00000291236.11|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr12_-_122985494_122985543	0.00495327	SOX3_SOX2	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr19_+_18263928_18264072	0.00493479	SOX3_SOX2	ENST00000222254.8|PIK3R2|ENSG00000105647.10|phosphoinositide-3-kinase, regulatory subunit 2 (beta)
hg19_v2_chr3_+_19189946_19190079	0.0049242	SOX3_SOX2	ENST00000328405.2|KCNH8|ENSG00000183960.4|potassium voltage-gated channel, subfamily H (eag-related), member 8
hg19_v2_chrX_-_51812268_51812368	0.00488561	SOX3_SOX2	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr5_-_130868688_130868736	0.00484425	SOX3_SOX2	ENST00000504575.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000513227.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6
hg19_v2_chr3_-_93781750_93781831	0.00483612	SOX3_SOX2	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr5_-_124084493_124084524	0.00479377	SOX3_SOX2	ENST00000509799.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr15_-_101792137_101792159	0.0047793	SOX3_SOX2	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr1_+_61330931_61331017	0.0047683	SOX3_SOX2	ENST00000371191.1|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr8_-_18744528_18744585	0.00475832	SOX3_SOX2	ENST00000523619.1|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr10_-_49482907_49482941	0.00472551	SOX3_SOX2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr11_+_125034586_125034604	0.00470279	SOX3_SOX2	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr12_+_51818749_51818901	0.00469233	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr19_+_30719410_30719461	0.00466437	SOX3_SOX2	ENST00000585628.1|ZNF536|ENSG00000198597.4|zinc finger protein 536 	ENST00000591488.1|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr6_+_20403997_20404034	0.00464961	SOX3_SOX2	ENST00000535432.1|E2F3|ENSG00000112242.10|E2F transcription factor 3
hg19_v2_chr3_+_9958758_9958848	0.0045467	SOX3_SOX2	ENST00000383812.4|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000438091.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000295981.3|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000436503.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000403601.3|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000416074.2|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000455057.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C
hg19_v2_chr9_+_115249100_115249358	0.004536	SOX3_SOX2	ENST00000337530.6|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000374244.3|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000536272.1|KIAA1958|ENSG00000165185.10|KIAA1958
hg19_v2_chr3_-_57583052_57583079	0.00447077	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr1_+_151739131_151739177	0.00447036	SOX3_SOX2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr15_-_70388943_70389220	0.00446166	SOX3_SOX2	ENST00000559048.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000560939.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000440567.3|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000557907.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558379.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000451782.2|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000559929.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr1_+_90460661_90460745	0.00434723	SOX3_SOX2	ENST00000340281.4|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000361911.5|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000370447.3|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000455342.2|ZNF326|ENSG00000162664.12|zinc finger protein 326
hg19_v2_chr4_-_90757364_90757396	0.0043372	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr12_-_118498911_118498924	0.00431367	SOX3_SOX2	ENST00000544233.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr19_+_1105110_1105259	0.00431192	SOX3_SOX2	ENST00000587648.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chr14_-_23904861_23904927	0.00430079	SOX3_SOX2	ENST00000355349.3|MYH7|ENSG00000092054.12|myosin, heavy chain 7, cardiac muscle, beta
hg19_v2_chr2_-_37551846_37551952	0.00428101	SOX3_SOX2	ENST00000443187.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr1_+_172389821_172389833	0.00426217	SOX3_SOX2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr2_+_30569506_30569525	0.00424918	SOX3_SOX2	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr3_+_123813543_123813587	0.00421735	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr2_-_201828356_201828412	0.0042048	SOX3_SOX2	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr17_-_39661947_39661969	0.00420344	SOX3_SOX2	ENST00000590425.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr19_-_20150301_20150321	0.00419125	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr1_-_23670817_23670829	0.00410828	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr1_+_54411995_54412063	0.00410143	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chrX_-_101726732_101726732	0.00409104	SOX3_SOX2	ENST00000457521.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000412230.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000453326.2|TCP11X2|ENSG00000215029.4|t-complex 11 family, X-linked 2
hg19_v2_chr7_+_29186192_29186222	0.00407942	SOX3_SOX2	ENST00000539406.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr2_-_97535708_97535843	0.00406647	SOX3_SOX2	ENST00000305476.5|SEMA4C|ENSG00000168758.6|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
hg19_v2_chr9_+_101705893_101705921	0.00406431	SOX3_SOX2	ENST00000375001.3|COL15A1|ENSG00000204291.6|collagen, type XV, alpha 1
hg19_v2_chr1_-_89357179_89357301	0.0040534	SOX3_SOX2	ENST00000448623.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000418217.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000370500.5|GTF2B|ENSG00000137947.7|general transcription factor IIB
hg19_v2_chr19_+_44100544_44100581	0.00396172	SOX3_SOX2	ENST00000391965.2|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000525771.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr10_+_70939983_70940044	0.00395242	SOX3_SOX2	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr16_+_21623958_21624021	0.00393498	SOX3_SOX2	ENST00000568826.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr10_-_46167722_46167926	0.00390873	SOX3_SOX2	ENST00000374366.3|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000344646.5|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chr6_-_146057144_146057164	0.00390378	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chr19_+_58095501_58095628	0.00389797	SOX3_SOX2	ENST00000536878.2|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597850.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597219.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000598689.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000599456.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000307468.4|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1
hg19_v2_chr3_+_23851928_23851951	0.00386694	SOX3_SOX2	ENST00000467766.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1 	ENST00000424381.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr4_-_120549163_120549220	0.00380331	SOX3_SOX2	ENST00000394439.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific 	ENST00000420633.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr12_-_45307711_45307922	0.00380214	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr15_+_41136734_41136873	0.00375986	SOX3_SOX2	ENST00000568580.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr12_-_76953284_76953341	0.00375123	SOX3_SOX2	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr7_+_35840542_35840671	0.00373703	SOX3_SOX2	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr18_+_56532053_56532095	0.00372737	SOX3_SOX2	ENST00000592452.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr8_+_98656336_98656535	0.00369481	SOX3_SOX2	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr17_+_16284399_16284416	0.00368074	SOX3_SOX2	ENST00000535788.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr9_+_140032842_140032842	0.00365958	SOX3_SOX2	ENST00000371561.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1 	ENST00000315048.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1
hg19_v2_chr22_-_45404819_45404874	0.00365046	SOX3_SOX2	ENST00000447824.3|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000404079.2|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000420689.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000403565.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B
hg19_v2_chr1_-_202113805_202113883	0.00361628	SOX3_SOX2	ENST00000272217.2|ARL8A|ENSG00000143862.3|ADP-ribosylation factor-like 8A
hg19_v2_chr1_-_173174681_173174702	0.00356288	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr13_+_51483814_51483935	0.00355094	SOX3_SOX2	ENST00000336617.3|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B 	ENST00000422660.1|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B
hg19_v2_chr14_+_101123580_101123695	0.00354574	SOX3_SOX2	ENST00000556697.1|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523 	ENST00000360899.2|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523 	ENST00000553623.1|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523
hg19_v2_chr9_-_115774453_115774507	0.00354321	SOX3_SOX2	ENST00000427548.1|ZNF883|ENSG00000228623.2|zinc finger protein 883
hg19_v2_chr19_+_52298399_52298445	0.00352825	SOX3_SOX2	ENST00000339223.4|FPR3|ENSG00000187474.4|formyl peptide receptor 3
hg19_v2_chr15_-_81202118_81202118	0.00352535	SOX3_SOX2	ENST00000560560.1|RP11-351M8.1|ENSG00000259649.1|Uncharacterized protein
hg19_v2_chr1_-_53793584_53793719	0.00349314	SOX3_SOX2	ENST00000354412.3|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000347547.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000306052.6|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chrX_-_114252193_114252207	0.00345539	SOX3_SOX2	ENST00000243213.1|IL13RA2|ENSG00000123496.3|interleukin 13 receptor, alpha 2
hg19_v2_chr20_+_3870024_3870072	0.00345504	SOX3_SOX2	ENST00000610179.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr9_+_130026756_130026871	0.00342625	SOX3_SOX2	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr17_-_41623691_41623715	0.00337505	SOX3_SOX2	ENST00000545954.1|ETV4|ENSG00000175832.8|ets variant 4
hg19_v2_chr17_+_8213590_8213603	0.00334687	SOX3_SOX2	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr8_+_133787586_133787673	0.00330013	SOX3_SOX2	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr3_-_170744498_170744542	0.00329041	SOX3_SOX2	ENST00000382808.4|SLC2A2|ENSG00000163581.9|solute carrier family 2 (facilitated glucose transporter), member 2 	ENST00000314251.3|SLC2A2|ENSG00000163581.9|solute carrier family 2 (facilitated glucose transporter), member 2
hg19_v2_chr3_+_111260954_111260977	0.0032608	SOX3_SOX2	ENST00000283285.5|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr7_+_95401877_95401948	0.00325109	SOX3_SOX2	ENST00000524053.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000324972.6|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000537881.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000437599.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000359388.4|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000413338.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chr22_-_39151463_39151639	0.00325014	SOX3_SOX2	ENST00000405510.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000433561.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr13_+_98795505_98795522	0.00323735	SOX3_SOX2	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr19_+_9732156_9732223	0.00322583	SOX3_SOX2	ENST00000586614.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000587536.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000591056.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000592851.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82
hg19_v2_chr7_+_2671568_2671606	0.00315196	SOX3_SOX2	ENST00000258796.7|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr5_+_66300464_66300505	0.00314906	SOX3_SOX2	ENST00000436277.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr7_-_5463175_5463195	0.00314469	SOX3_SOX2	ENST00000399537.4|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18 	ENST00000430969.1|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18
hg19_v2_chr17_+_31255023_31255089	0.00313219	SOX3_SOX2	ENST00000395149.2|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000261713.4|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr9_-_23825956_23826063	0.00311549	SOX3_SOX2	ENST00000397312.2|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr11_-_6341724_6341762	0.00308157	SOX3_SOX2	ENST00000530979.1|PRKCDBP|ENSG00000170955.9|protein kinase C, delta binding protein
hg19_v2_chr13_+_113656047_113656068	0.00305236	SOX3_SOX2	ENST00000375597.4|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr19_+_10765003_10765058	0.00304084	SOX3_SOX2	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr12_+_19358228_19358259	0.00297172	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr1_-_156265438_156265485	0.00296511	SOX3_SOX2	ENST00000362007.1|C1orf85|ENSG00000198715.7|chromosome 1 open reading frame 85
hg19_v2_chr13_-_31040060_31040102	0.00294246	SOX3_SOX2	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr16_+_72459838_72459857	0.00285048	SOX3_SOX2	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr18_-_29340827_29340845	0.0028408	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr7_+_12727250_12727265	0.0028349	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr3_-_197025447_197025533	0.00282017	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr8_-_101965559_101965570	0.0028157	SOX3_SOX2	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr14_-_45603657_45603732	0.0028	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chr4_+_55524085_55524110	0.00278103	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr16_-_787728_787761	0.00277868	SOX3_SOX2	ENST00000567403.1|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like 	ENST00000562421.1|NARFL|ENSG00000103245.9|nuclear prelamin A recognition factor-like
hg19_v2_chrX_+_153626708_153626730	0.00274446	SOX3_SOX2	ENST00000436473.1|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000344746.4|RPL10|ENSG00000147403.12|ribosomal protein L10 	ENST00000458500.1|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr19_+_52839490_52839508	0.00270959	SOX3_SOX2	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr19_-_42348692_42348771	0.00267624	SOX3_SOX2	ENST00000330743.3|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4 	ENST00000601246.1|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4
hg19_v2_chr1_-_156828810_156828914	0.00266682	SOX3_SOX2	ENST00000368195.3|INSRR|ENSG00000027644.4|insulin receptor-related receptor
hg19_v2_chr8_+_144295067_144295131	0.0026534	SOX3_SOX2	ENST00000330824.2|GPIHBP1|ENSG00000182851.2|glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
hg19_v2_chr10_-_97175444_97175481	0.00263927	SOX3_SOX2	ENST00000486141.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr1_+_17516275_17516284	0.00263914	SOX3_SOX2	ENST00000412427.1|RP11-380J14.1|ENSG00000204362.5|RP11-380J14.1
hg19_v2_chr14_+_91591873_91591888	0.00261128	SOX3_SOX2	ENST00000521064.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr6_-_11232891_11232915	0.00257458	SOX3_SOX2	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr7_+_95115210_95115217	0.00255115	SOX3_SOX2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr18_-_3874752_3874767	0.00253509	SOX3_SOX2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr11_-_18813353_18813389	0.00252971	SOX3_SOX2	ENST00000358540.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396171.4|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396167.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
hg19_v2_chr11_-_123525289_123525341	0.00251119	SOX3_SOX2	ENST00000392770.2|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000299333.3|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000530277.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr2_+_226265364_226265364	0.00248606	SOX3_SOX2	ENST00000272907.6|NYAP2|ENSG00000144460.10|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
hg19_v2_chr20_+_39765581_39765646	0.00248465	SOX3_SOX2	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr7_+_141408153_141408153	0.0024844	SOX3_SOX2	ENST00000397541.2|WEE2|ENSG00000214102.3|WEE1 homolog 2 (S. pombe)
hg19_v2_chr19_+_50354393_50354422	0.00245859	SOX3_SOX2	ENST00000391842.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr10_+_23217006_23217018	0.00245543	SOX3_SOX2	ENST00000376528.4|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000447081.1|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr4_-_57687847_57687911	0.00243128	SOX3_SOX2	ENST00000504762.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000248701.4|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000506738.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)
hg19_v2_chr3_+_130612803_130612877	0.00242667	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr3_-_114343768_114343822	0.00241938	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr3_-_56950407_56950499	0.00240651	SOX3_SOX2	ENST00000496106.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr12_+_133614062_133614117	0.00237109	SOX3_SOX2	ENST00000540031.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000536123.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr13_-_95131923_95131944	0.00236552	SOX3_SOX2	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr4_+_159727222_159727266	0.0023396	SOX3_SOX2	ENST00000512986.1|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr3_+_54157480_54157547	0.00233299	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr17_-_39661849_39661871	0.00227987	SOX3_SOX2	ENST00000246635.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000336861.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587544.1|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587435.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr7_+_87257701_87257770	0.00227899	SOX3_SOX2	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr15_+_25200108_25200161	0.00226626	SOX3_SOX2	ENST00000577949.1|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000338094.6|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000579070.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000577565.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000338327.4|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein
hg19_v2_chr8_+_21777159_21777221	0.00226504	SOX3_SOX2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr14_-_68000442_68000456	0.00225367	SOX3_SOX2	ENST00000554278.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr1_+_89990378_89990429	0.00225029	SOX3_SOX2	ENST00000449440.1|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr13_-_60737898_60737910	0.00224339	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chrX_-_153599578_153599656	0.00223712	SOX3_SOX2	ENST00000360319.4|FLNA|ENSG00000196924.10|filamin A, alpha 	ENST00000344736.4|FLNA|ENSG00000196924.10|filamin A, alpha
hg19_v2_chr6_-_2962331_2962391	0.00222493	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr11_-_85397167_85397320	0.00222353	SOX3_SOX2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr8_+_42196000_42196021	0.00221554	SOX3_SOX2	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr7_-_107443652_107443675	0.00219208	SOX3_SOX2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr2_-_239148599_239148765	0.00218052	SOX3_SOX2	ENST00000409182.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409002.3|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000450098.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409356.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409160.3|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409574.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000272937.5|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6
hg19_v2_chr16_-_18887627_18887627	0.00217332	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr7_-_148725544_148725630	0.00217198	SOX3_SOX2	ENST00000413966.1|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr12_-_46663734_46663851	0.00216885	SOX3_SOX2	ENST00000550173.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr1_-_167883353_167883453	0.0021001	SOX3_SOX2	ENST00000545172.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr17_+_15602891_15603091	0.00208557	SOX3_SOX2	ENST00000421016.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000593105.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580259.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583566.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000472486.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000395894.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000581529.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000579694.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580393.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000585194.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583031.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000464847.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr1_-_157108266_157108347	0.00206808	SOX3_SOX2	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr1_-_23670752_23670803	0.00204781	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr14_-_50999307_50999367	0.00203249	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr6_+_34857019_34857117	0.0020009	SOX3_SOX2	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr17_-_56406117_56406165	0.00198815	SOX3_SOX2	ENST00000268893.6|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1 	ENST00000355701.3|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1
hg19_v2_chr5_-_140700322_140700358	0.00198497	SOX3_SOX2	ENST00000313368.5|TAF7|ENSG00000178913.5|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
hg19_v2_chrX_+_51927919_51927991	0.00197556	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr6_+_134274354_134274371	0.00197234	SOX3_SOX2	ENST00000367869.1|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr12_-_99548270_99548295	0.00196122	SOX3_SOX2	ENST00000546568.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000332712.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000546960.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr4_+_159690218_159690290	0.00196116	SOX3_SOX2	ENST00000264433.6|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr11_-_125366018_125366076	0.00194785	SOX3_SOX2	ENST00000527534.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr1_+_202789394_202789394	0.00194578	SOX3_SOX2	ENST00000330493.5|RP11-480I12.4|ENSG00000184774.6|Putative inactive alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515
hg19_v2_chr17_+_16284104_16284245	0.00194527	SOX3_SOX2	ENST00000577958.1|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000302182.3|UBB|ENSG00000170315.9|ubiquitin B 	ENST00000577640.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr8_-_145688231_145688261	0.00192988	SOX3_SOX2	ENST00000530374.1|CYHR1|ENSG00000187954.8|cysteine/histidine-rich 1
hg19_v2_chr15_-_50647370_50647405	0.00190449	SOX3_SOX2	ENST00000558970.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000396464.3|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000560825.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr7_-_47621229_47621307	0.00186146	SOX3_SOX2	ENST00000434451.1|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr5_-_110062384_110062450	0.00181891	SOX3_SOX2	ENST00000429839.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr6_-_127664736_127664773	0.00180552	SOX3_SOX2	ENST00000368291.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000309620.9|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454859.3|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr1_-_230513367_230513391	0.00179217	SOX3_SOX2	ENST00000321327.2|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5 	ENST00000525115.1|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5
hg19_v2_chr7_+_101459263_101459310	0.00178866	SOX3_SOX2	ENST00000292538.4|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000393824.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000547394.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000360264.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000425244.2|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chr4_+_126315091_126315091	0.00172631	SOX3_SOX2	ENST00000335110.5|FAT4|ENSG00000196159.7|FAT atypical cadherin 4
hg19_v2_chr15_+_93447675_93447703	0.00169641	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr8_-_38386175_38386180	0.00168346	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr9_-_130517522_130517583	0.0016693	SOX3_SOX2	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr7_+_44836276_44836283	0.0016338	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr20_-_48184638_48184694	0.00162778	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr4_+_184365744_184365797	0.00161111	SOX3_SOX2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr4_+_4388805_4388855	0.00160219	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr7_+_6144514_6144614	0.00154746	SOX3_SOX2	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chr4_-_175443943_175444049	0.00151212	SOX3_SOX2	ENST00000296522.6|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr1_-_1711508_1711521	0.0015082	SOX3_SOX2	ENST00000378625.1|NADK|ENSG00000008130.11|NAD kinase
hg19_v2_chr1_+_89990431_89990493	0.00148592	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr1_+_161129240_161129250	0.00146262	SOX3_SOX2	ENST00000492950.1|USP21|ENSG00000143258.11|ubiquitin specific peptidase 21
hg19_v2_chr14_+_93799556_93799577	0.00144292	SOX3_SOX2	ENST00000256339.4|UNC79|ENSG00000133958.9|unc-79 homolog (C. elegans)
hg19_v2_chr12_-_22063787_22063912	0.00141472	SOX3_SOX2	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr1_-_9953295_9953320	0.00141373	SOX3_SOX2	ENST00000377258.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr13_+_32605437_32605473	0.00140209	SOX3_SOX2	ENST00000380250.3|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr11_-_94227029_94227074	0.001373	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr3_+_50192457_50192498	0.00134799	SOX3_SOX2	ENST00000414301.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 	ENST00000450338.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr4_-_186733363_186733392	0.00134782	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr9_+_109625378_109625458	0.00133708	SOX3_SOX2	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr12_-_62997214_62997214	0.00132335	SOX3_SOX2	ENST00000408887.2|C12orf61|ENSG00000221949.2|chromosome 12 open reading frame 61
hg19_v2_chr13_-_103053946_103054124	0.00131628	SOX3_SOX2	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr4_-_90756769_90756846	0.00126736	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr7_+_87563458_87563489	0.00124969	SOX3_SOX2	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr10_+_70480963_70481010	0.00124067	SOX3_SOX2	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr4_-_20985632_20985664	0.00117711	SOX3_SOX2	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr15_+_52043758_52043809	0.0011666	SOX3_SOX2	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr12_-_117628333_117628339	0.00115043	SOX3_SOX2	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr3_+_111260980_111261016	0.00113432	SOX3_SOX2	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr10_+_127371798_127371862	0.00113357	SOX3_SOX2	ENST00000596068.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000607914.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000415305.2|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000449693.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3
hg19_v2_chr1_-_115300579_115300590	0.00113041	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr1_-_205053645_205053645	0.00109507	SOX3_SOX2	ENST00000367167.3|TMEM81|ENSG00000174529.6|transmembrane protein 81
hg19_v2_chr11_-_2906979_2907111	0.0010862	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr11_-_71753188_71753200	0.00103444	SOX3_SOX2	ENST00000543009.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr11_+_45943169_45943198	0.000955717	SOX3_SOX2	ENST00000529052.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B 	ENST00000531526.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B
hg19_v2_chrX_+_21958814_21958864	0.000948341	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr6_+_56911476_56911524	0.00092459	SOX3_SOX2	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr3_-_49058479_49058491	0.000892153	SOX3_SOX2	ENST00000440857.1|DALRD3|ENSG00000178149.12|DALR anticodon binding domain containing 3
hg19_v2_chr17_+_2240916_2240989	0.0008838	SOX3_SOX2	ENST00000574563.1|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr7_-_142583506_142583510	0.000853001	SOX3_SOX2	ENST00000359396.3|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr6_+_151042224_151042241	0.000850304	SOX3_SOX2	ENST00000358517.2|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
hg19_v2_chr11_-_2162468_2162497	0.000821251	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr9_-_36400213_36400296	0.000784883	SOX3_SOX2	ENST00000259605.6|RNF38|ENSG00000137075.13|ring finger protein 38 	ENST00000353739.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr4_+_54243862_54243874	0.000756543	SOX3_SOX2	ENST00000306932.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr5_-_16936340_16936418	0.000740041	SOX3_SOX2	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr17_-_33521412_33521412	0.000727711	SOX3_SOX2	ENST00000297307.5|SLC35G3|ENSG00000164729.6|solute carrier family 35, member G3
hg19_v2_chr6_+_160183492_160183523	0.000698031	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr7_-_135433534_135433594	0.000681864	SOX3_SOX2	ENST00000338588.3|FAM180A|ENSG00000189320.4|family with sequence similarity 180, member A
hg19_v2_chr5_-_41261540_41261575	0.000678647	SOX3_SOX2	ENST00000263413.3|C6|ENSG00000039537.9|complement component 6
hg19_v2_chr1_+_235492300_235492344	0.000639829	SOX3_SOX2	ENST00000476121.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000497327.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr11_+_64058820_64058881	0.000579006	SOX3_SOX2	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr15_-_57210769_57210803	0.000559065	SOX3_SOX2	ENST00000559000.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr9_+_123884038_123884096	0.000545634	SOX3_SOX2	ENST00000373847.1|CNTRL|ENSG00000119397.12|centriolin
hg19_v2_chr6_-_128222103_128222226	0.000506781	SOX3_SOX2	ENST00000434358.1|THEMIS|ENSG00000172673.6|thymocyte selection associated 	ENST00000543064.1|THEMIS|ENSG00000172673.6|thymocyte selection associated 	ENST00000368248.2|THEMIS|ENSG00000172673.6|thymocyte selection associated
hg19_v2_chr1_+_54411715_54411760	0.000462141	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr1_+_25757376_25757411	0.000447348	SOX3_SOX2	ENST00000399766.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000399763.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000374343.4|TMEM57|ENSG00000204178.5|transmembrane protein 57
hg19_v2_chr9_+_125703282_125703337	0.000445911	SOX3_SOX2	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr16_+_24741013_24741058	0.000408507	SOX3_SOX2	ENST00000315183.7|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A 	ENST00000395799.3|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A
hg19_v2_chr4_-_157892498_157892546	0.000391847	SOX3_SOX2	ENST00000502773.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr6_-_41040268_41040353	0.00036233	SOX3_SOX2	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr12_+_120907622_120907696	0.000352221	SOX3_SOX2	ENST00000392509.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549649.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548342.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr8_+_62747349_62747515	0.000351898	SOX3_SOX2	ENST00000517953.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1	ENST00000520097.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1	ENST00000519766.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1
hg19_v2_chr15_-_86338134_86338261	0.000329187	SOX3_SOX2	ENST00000337975.5|KLHL25|ENSG00000183655.11|kelch-like family member 25
hg19_v2_chr1_-_184006829_184006911	0.000289447	SOX3_SOX2	ENST00000361927.4|COLGALT2|ENSG00000198756.6|collagen beta(1-O)galactosyltransferase 2
hg19_v2_chr15_-_86338100_86338132	0.00025309	SOX3_SOX2	ENST00000536947.1|KLHL25|ENSG00000183655.11|kelch-like family member 25
hg19_v2_chr2_-_197791441_197791525	0.000245794	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr13_+_25946201_25946215	0.000241394	SOX3_SOX2	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr2_-_74570520_74570547	0.000234057	SOX3_SOX2	ENST00000394019.2|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000346834.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000359484.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000423644.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000377634.4|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5 	ENST00000436454.1|SLC4A5|ENSG00000188687.11|solute carrier family 4 (sodium bicarbonate cotransporter), member 5
hg19_v2_chrX_+_16737718_16737778	0.000221408	SOX3_SOX2	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr10_+_72972281_72972336	0.000170713	SOX3_SOX2	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr10_-_73848764_73848795	0.000168535	SOX3_SOX2	ENST00000317376.4|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 	ENST00000412663.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr1_+_28285973_28285973	0.000156494	SOX3_SOX2	ENST00000373884.5|XKR8|ENSG00000158156.7|XK, Kell blood group complex subunit-related family, member 8
hg19_v2_chr12_+_112204691_112204781	0.000142844	SOX3_SOX2	ENST00000416293.3|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial) 	ENST00000261733.2|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial)
hg19_v2_chr17_+_4046462_4046550	0.000134666	SOX3_SOX2	ENST00000577075.2|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000575251.1|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000301391.3|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2
hg19_v2_chr17_+_2240775_2240812	0.000115728	SOX3_SOX2	ENST00000268989.3|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2 	ENST00000426855.2|SGSM2|ENSG00000141258.8|small G protein signaling modulator 2
hg19_v2_chr10_-_73848531_73848564	0.000112369	SOX3_SOX2	ENST00000373109.2|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr1_+_31886653_31886721	9.1939e-05	SOX3_SOX2	ENST00000536384.1|SERINC2|ENSG00000168528.7|serine incorporator 2
hg19_v2_chr17_+_34640031_34640034	9.15167e-05	SOX3_SOX2	ENST00000339270.6|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2 	ENST00000482104.1|CCL4L2|ENSG00000197262.8|chemokine (C-C motif) ligand 4-like 2
hg19_v2_chr1_-_11024258_11024258	7.02507e-05	SOX3_SOX2	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr5_-_110062349_110062380	2.37993e-05	SOX3_SOX2	ENST00000511883.2|TMEM232|ENSG00000186952.10|transmembrane protein 232 	ENST00000455884.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr21_+_43934633_43934657	9.33944e-06	SOX3_SOX2	ENST00000398343.2|SLC37A1|ENSG00000160190.9|solute carrier family 37 (glucose-6-phosphate transporter), member 1
