hg19_v2_chr20_-_36794938_36794980	0.663094	PAX8	ENST00000453095.1|TGM2|ENSG00000198959.7|transglutaminase 2
hg19_v2_chr6_+_24126350_24126497	0.445981	PAX8	ENST00000378491.4|NRSN1|ENSG00000152954.7|neurensin 1 	ENST00000378478.1|NRSN1|ENSG00000152954.7|neurensin 1 	ENST00000378477.2|NRSN1|ENSG00000152954.7|neurensin 1
hg19_v2_chr12_+_75874460_75874549	0.419952	PAX8	ENST00000266659.3|GLIPR1|ENSG00000139278.5|GLI pathogenesis-related 1
hg19_v2_chr6_-_32784687_32784839	0.323307	PAX8	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr21_-_43786634_43786703	0.321987	PAX8	ENST00000291527.2|TFF1|ENSG00000160182.2|trefoil factor 1
hg19_v2_chr11_+_4510109_4510109	0.320956	PAX8	ENST00000307632.3|OR52K1|ENSG00000196778.2|olfactory receptor, family 52, subfamily K, member 1
hg19_v2_chr11_-_104905840_104905977	0.299085	PAX8	ENST00000526568.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000393136.4|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000531166.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000534497.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000527979.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000446369.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000353247.5|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000528974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000533400.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525825.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000436863.3|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase
hg19_v2_chr1_+_161494036_161494036	0.297902	PAX8	ENST00000309758.4|HSPA6|ENSG00000173110.6|heat shock 70kDa protein 6 (HSP70B')
hg19_v2_chr2_-_132589601_132589606	0.295755	PAX8	ENST00000437330.1|AC103564.7|ENSG00000229203.1|AC103564.7
hg19_v2_chr10_+_135340859_135341001	0.276524	PAX8	ENST00000252945.3|CYP2E1|ENSG00000130649.5|cytochrome P450, family 2, subfamily E, polypeptide 1 	ENST00000421586.1|CYP2E1|ENSG00000130649.5|cytochrome P450, family 2, subfamily E, polypeptide 1 	ENST00000418356.1|CYP2E1|ENSG00000130649.5|cytochrome P450, family 2, subfamily E, polypeptide 1
hg19_v2_chrX_-_153141302_153141399	0.256576	PAX8	ENST00000361699.4|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule 	ENST00000543994.1|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule 	ENST00000370057.3|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule 	ENST00000538883.1|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule 	ENST00000361981.3|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule
hg19_v2_chr4_+_75230853_75230871	0.255538	PAX8	ENST00000244869.2|EREG|ENSG00000124882.3|epiregulin
hg19_v2_chr19_+_35939154_35939203	0.237111	PAX8	ENST00000599180.2|FFAR2|ENSG00000126262.4|free fatty acid receptor 2
hg19_v2_chr19_-_36019123_36019253	0.236374	PAX8	ENST00000588674.1|SBSN|ENSG00000189001.6|suprabasin 	ENST00000452271.2|SBSN|ENSG00000189001.6|suprabasin 	ENST00000518157.1|SBSN|ENSG00000189001.6|suprabasin
hg19_v2_chr6_+_8652370_8652515	0.233554	PAX8	ENST00000503668.1|HULC|ENSG00000251164.1|hepatocellular carcinoma up-regulated long non-coding RNA
hg19_v2_chr6_-_134639180_134639220	0.203115	PAX8	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr11_+_64323156_64323165	0.202328	PAX8	ENST00000377585.3|SLC22A11|ENSG00000168065.11|solute carrier family 22 (organic anion/urate transporter), member 11
hg19_v2_chr1_+_41448820_41448833	0.195728	PAX8	ENST00000372616.1|CTPS1|ENSG00000171793.9|CTP synthase 1
hg19_v2_chr17_-_39216344_39216368	0.193843	PAX8	ENST00000391418.2|KRTAP2-3|ENSG00000212724.2|keratin associated protein 2-3
hg19_v2_chr20_+_4152356_4152363	0.192367	PAX8	ENST00000379460.2|SMOX|ENSG00000088826.13|spermine oxidase
hg19_v2_chr10_+_35484793_35484937	0.189898	PAX8	ENST00000488741.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000474931.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000468236.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000344351.5|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000490511.1|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr10_+_70847852_70847874	0.18264	PAX8	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr1_+_180165672_180165817	0.178535	PAX8	ENST00000443059.1|QSOX1|ENSG00000116260.12|quiescin Q6 sulfhydryl oxidase 1
hg19_v2_chr6_+_131571535_131571595	0.176538	PAX8	ENST00000474850.2|AKAP7|ENSG00000118507.11|A kinase (PRKA) anchor protein 7
hg19_v2_chr20_+_2795609_2795620	0.174631	PAX8	ENST00000554164.1|TMEM239|ENSG00000198326.8|transmembrane protein 239 	ENST00000380593.4|TMEM239|ENSG00000241690.3|CDNA FLJ26142 fis, clone TST04526; Transmembrane protein 239; Uncharacterized protein
hg19_v2_chr10_-_104597286_104597295	0.174375	PAX8	ENST00000369887.3|CYP17A1|ENSG00000148795.5|cytochrome P450, family 17, subfamily A, polypeptide 1
hg19_v2_chr17_+_9745786_9745816	0.162943	PAX8	ENST00000304773.5|GLP2R|ENSG00000065325.8|glucagon-like peptide 2 receptor
hg19_v2_chr12_+_95612006_95612042	0.158126	PAX8	ENST00000551311.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000546445.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr3_+_11178779_11178942	0.154957	PAX8	ENST00000438284.2|HRH1|ENSG00000196639.6|histamine receptor H1
hg19_v2_chr15_+_89631647_89631725	0.154182	PAX8	ENST00000569550.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565066.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2 	ENST00000565973.1|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr4_-_75695366_75695366	0.152007	PAX8	ENST00000512743.1|BTC|ENSG00000174808.7|betacellulin
hg19_v2_chr11_-_47870091_47870121	0.151944	PAX8	ENST00000526870.1|NUP160|ENSG00000030066.9|nucleoporin 160kDa
hg19_v2_chr12_+_7167980_7168040	0.151314	PAX8	ENST00000360817.5|C1S|ENSG00000182326.10|complement component 1, s subcomponent 	ENST00000402681.3|C1S|ENSG00000182326.10|complement component 1, s subcomponent
hg19_v2_chr11_+_65851443_65851457	0.146807	PAX8	ENST00000533756.1|PACS1|ENSG00000175115.7|phosphofurin acidic cluster sorting protein 1
hg19_v2_chr10_+_12391685_12391734	0.142704	PAX8	ENST00000378845.1|CAMK1D|ENSG00000183049.8|calcium/calmodulin-dependent protein kinase ID
hg19_v2_chr19_+_9361606_9361606	0.141245	PAX8	ENST00000456448.1|OR7E24|ENSG00000237521.1|olfactory receptor, family 7, subfamily E, member 24
hg19_v2_chr15_-_60683326_60683496	0.140054	PAX8	ENST00000559350.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000558986.1|ANXA2|ENSG00000182718.12|annexin A2 	ENST00000560389.1|ANXA2|ENSG00000182718.12|annexin A2
hg19_v2_chr10_+_24738355_24738380	0.138577	PAX8	ENST00000307544.6|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr5_+_148521136_148521177	0.133223	PAX8	ENST00000506113.1|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3
hg19_v2_chr6_+_30130969_30131007	0.130957	PAX8	ENST00000376694.4|TRIM15|ENSG00000204610.8|tripartite motif containing 15
hg19_v2_chr3_-_110612323_110612323	0.130886	PAX8	ENST00000383686.2|RP11-553A10.1|ENSG00000206532.2|Uncharacterized protein
hg19_v2_chr21_-_43816052_43816116	0.130284	PAX8	ENST00000398405.1|TMPRSS3|ENSG00000160183.9|transmembrane protease, serine 3
hg19_v2_chr17_-_73781567_73781629	0.128163	PAX8	ENST00000586607.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr16_+_75690093_75690122	0.127726	PAX8	ENST00000564671.2|TERF2IP|ENSG00000166848.5|telomeric repeat binding factor 2, interacting protein
hg19_v2_chrX_+_151903207_151903234	0.126099	PAX8	ENST00000370287.3|CSAG1|ENSG00000198930.8|chondrosarcoma associated gene 1
hg19_v2_chr4_+_156680153_156680242	0.123613	PAX8	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr11_-_102401469_102401488	0.119326	PAX8	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr7_+_75677354_75677459	0.116425	PAX8	ENST00000461263.2|MDH2|ENSG00000146701.7|malate dehydrogenase 2, NAD (mitochondrial) 	ENST00000315758.5|MDH2|ENSG00000146701.7|malate dehydrogenase 2, NAD (mitochondrial) 	ENST00000443006.1|MDH2|ENSG00000146701.7|malate dehydrogenase 2, NAD (mitochondrial)
hg19_v2_chr6_-_44233361_44233500	0.11614	PAX8	ENST00000275015.5|NFKBIE|ENSG00000146232.10|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
hg19_v2_chr15_+_67420441_67420606	0.116074	PAX8	ENST00000558894.1|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr17_-_72588422_72588422	0.113028	PAX8	ENST00000375352.1|CD300LD|ENSG00000204345.1|CD300 molecule-like family member d
hg19_v2_chr17_-_39646116_39646164	0.11199	PAX8	ENST00000328119.6|KRT36|ENSG00000126337.9|keratin 36
hg19_v2_chr15_+_45021183_45021189	0.110101	PAX8	ENST00000559390.1|TRIM69|ENSG00000185880.8|tripartite motif containing 69
hg19_v2_chr22_-_31324215_31324215	0.109403	PAX8	ENST00000429468.1|MORC2|ENSG00000133422.8|MORC family CW-type zinc finger 2
hg19_v2_chr1_-_214638146_214638146	0.10843	PAX8	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr3_+_130279178_130279178	0.106896	PAX8	ENST00000358511.6|COL6A6|ENSG00000206384.6|collagen, type VI, alpha 6 	ENST00000453409.2|COL6A6|ENSG00000206384.6|collagen, type VI, alpha 6
hg19_v2_chr12_-_56236711_56236730	0.105757	PAX8	ENST00000409200.3|MMP19|ENSG00000123342.11|matrix metallopeptidase 19
hg19_v2_chr2_-_175712479_175712503	0.100598	PAX8	ENST00000443238.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr6_+_142623758_142623795	0.100085	PAX8	ENST00000541199.1|GPR126|ENSG00000112414.10|G protein-coupled receptor 126 	ENST00000435011.2|GPR126|ENSG00000112414.10|G protein-coupled receptor 126
hg19_v2_chr12_-_123187890_123187911	0.0997045	PAX8	ENST00000328880.5|HCAR2|ENSG00000182782.7|hydroxycarboxylic acid receptor 2
hg19_v2_chr1_-_153514241_153514241	0.096355	PAX8	ENST00000368718.1|S100A5|ENSG00000196420.3|S100 calcium binding protein A5 	ENST00000359215.1|S100A5|ENSG00000196420.3|S100 calcium binding protein A5
hg19_v2_chr6_+_41196052_41196063	0.0953477	PAX8	ENST00000341495.2|TREML4|ENSG00000188056.7|triggering receptor expressed on myeloid cells-like 4
hg19_v2_chr10_-_21186144_21186247	0.0936072	PAX8	ENST00000377119.1|NEBL|ENSG00000078114.14|nebulette
hg19_v2_chr2_-_87248975_87248975	0.0921661	PAX8	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chr3_-_110612059_110612059	0.0905127	PAX8	ENST00000485473.1|RP11-553A10.1|ENSG00000206532.2|Uncharacterized protein
hg19_v2_chr11_-_74022658_74022704	0.0901384	PAX8	ENST00000427714.2|P4HA3|ENSG00000149380.7|prolyl 4-hydroxylase, alpha polypeptide III 	ENST00000331597.4|P4HA3|ENSG00000149380.7|prolyl 4-hydroxylase, alpha polypeptide III
hg19_v2_chr4_-_23735183_23735202	0.0886886	PAX8	ENST00000507666.1|RP11-380P13.2|ENSG00000251292.1|RP11-380P13.2
hg19_v2_chr3_-_137851220_137851236	0.0867981	PAX8	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr2_-_26864228_26864237	0.0867859	PAX8	ENST00000288861.4|CIB4|ENSG00000157884.6|calcium and integrin binding family member 4
hg19_v2_chr11_+_107461948_107462009	0.0857082	PAX8	ENST00000265840.7|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1 	ENST00000443271.2|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1
hg19_v2_chrX_-_153141434_153141509	0.0843975	PAX8	ENST00000407935.2|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule 	ENST00000439496.1|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule
hg19_v2_chr21_-_27462351_27462377	0.0831896	PAX8	ENST00000448850.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chrX_+_17653413_17653413	0.0826491	PAX8	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr8_-_101117847_101117854	0.0819004	PAX8	ENST00000523287.1|RGS22|ENSG00000132554.15|regulator of G-protein signaling 22 	ENST00000519092.1|RGS22|ENSG00000132554.15|regulator of G-protein signaling 22
hg19_v2_chr17_+_7462103_7462110	0.0815295	PAX8	ENST00000396545.4|TNFSF13|ENSG00000161955.12|tumor necrosis factor (ligand) superfamily, member 13
hg19_v2_chr8_+_31496809_31496902	0.0802938	PAX8	ENST00000518104.1|NRG1|ENSG00000157168.14|neuregulin 1 	ENST00000519301.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr21_-_44582378_44582401	0.0802849	PAX8	ENST00000433840.1|AP001631.10|ENSG00000228120.2|AP001631.10
hg19_v2_chr12_-_129308487_129308588	0.0799873	PAX8	ENST00000266771.5|SLC15A4|ENSG00000139370.6|solute carrier family 15 (oligopeptide transporter), member 4
hg19_v2_chr17_-_73266616_73266702	0.0785357	PAX8	ENST00000579194.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000581777.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing
hg19_v2_chr5_-_176943917_176943943	0.0784164	PAX8	ENST00000330503.7|DDX41|ENSG00000183258.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
hg19_v2_chr9_-_134955246_134955295	0.0783616	PAX8	ENST00000357028.2|MED27|ENSG00000160563.9|mediator complex subunit 27 	ENST00000474263.1|MED27|ENSG00000160563.9|mediator complex subunit 27 	ENST00000292035.5|MED27|ENSG00000160563.9|mediator complex subunit 27
hg19_v2_chr10_-_21435488_21435488	0.0749114	PAX8	ENST00000534331.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000529198.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000377118.4|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113
hg19_v2_chr17_+_67410832_67410871	0.0748589	PAX8	ENST00000590474.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr9_+_71944241_71944241	0.0746392	PAX8	ENST00000257515.8|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr4_-_70653673_70653688	0.0735783	PAX8	ENST00000512870.1|SULT1B1|ENSG00000173597.4|sulfotransferase family, cytosolic, 1B, member 1
hg19_v2_chr19_-_50169064_50169132	0.0717495	PAX8	ENST00000593337.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000598808.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000600453.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000593818.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000597198.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000601809.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000377139.3|IRF3|ENSG00000126456.11|interferon regulatory factor 3
hg19_v2_chr17_+_7461849_7461914	0.0701196	PAX8	ENST00000338784.4|TNFSF13|ENSG00000161955.12|tumor necrosis factor (ligand) superfamily, member 13
hg19_v2_chr2_+_173724771_173724840	0.0699962	PAX8	ENST00000538974.1|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4 	ENST00000540783.1|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr15_-_43785274_43785288	0.069993	PAX8	ENST00000413546.1|TP53BP1|ENSG00000067369.9|tumor protein p53 binding protein 1
hg19_v2_chr8_+_27168988_27169021	0.0695146	PAX8	ENST00000397501.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000338238.4|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000544172.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta
hg19_v2_chr13_+_111748183_111748203	0.0690699	PAX8	ENST00000422994.1|LINC00368|ENSG00000225870.1|long intergenic non-protein coding RNA 368
hg19_v2_chr17_-_1508379_1508458	0.0689081	PAX8	ENST00000412517.3|SLC43A2|ENSG00000167703.10|solute carrier family 43 (amino acid system L transporter), member 2
hg19_v2_chr2_-_106013400_106013438	0.0640013	PAX8	ENST00000409807.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr11_+_9482551_9482604	0.0627788	PAX8	ENST00000438144.2|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000526657.1|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000299606.2|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000534265.1|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000412390.2|ZNF143|ENSG00000166478.5|zinc finger protein 143
hg19_v2_chr2_+_231860830_231861104	0.0622201	PAX8	ENST00000424440.1|SPATA3|ENSG00000173699.11|spermatogenesis associated 3 	ENST00000452881.1|SPATA3|ENSG00000173699.11|spermatogenesis associated 3 	ENST00000433428.2|SPATA3|ENSG00000173699.11|spermatogenesis associated 3 	ENST00000455816.1|SPATA3|ENSG00000173699.11|spermatogenesis associated 3 	ENST00000440792.1|SPATA3|ENSG00000173699.11|spermatogenesis associated 3 	ENST00000423134.1|SPATA3|ENSG00000173699.11|spermatogenesis associated 3
hg19_v2_chr19_-_50168962_50169062	0.0618481	PAX8	ENST00000599223.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000593922.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000600022.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000596765.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000599144.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000596822.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000598108.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000601373.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000595034.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3 	ENST00000601291.1|IRF3|ENSG00000126456.11|interferon regulatory factor 3
hg19_v2_chr3_-_78719376_78719409	0.0606988	PAX8	ENST00000495961.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr12_-_56236690_56236706	0.0600529	PAX8	ENST00000322569.4|MMP19|ENSG00000123342.11|matrix metallopeptidase 19
hg19_v2_chr4_-_10686475_10686490	0.0596188	PAX8	ENST00000226951.6|CLNK|ENSG00000109684.10|cytokine-dependent hematopoietic cell linker
hg19_v2_chr1_-_8586084_8586100	0.0589798	PAX8	ENST00000464972.1|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr16_-_87350970_87351006	0.0571509	PAX8	ENST00000567970.1|C16orf95|ENSG00000260456.2|chromosome 16 open reading frame 95
hg19_v2_chr6_-_51952367_51952416	0.0564295	PAX8	ENST00000340994.4|PKHD1|ENSG00000170927.10|polycystic kidney and hepatic disease 1 (autosomal recessive)
hg19_v2_chr6_+_30844192_30844221	0.05639	PAX8	ENST00000502955.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000505066.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr4_+_71091786_71091797	0.0559364	PAX8	ENST00000317987.5|FDCSP|ENSG00000181617.5|follicular dendritic cell secreted protein
hg19_v2_chr9_+_131549610_131549629	0.0549514	PAX8	ENST00000223865.8|TBC1D13|ENSG00000107021.11|TBC1 domain family, member 13
hg19_v2_chr12_-_92821922_92821924	0.0548478	PAX8	ENST00000538965.1|CLLU1OS|ENSG00000205057.3|chronic lymphocytic leukemia up-regulated 1 opposite strand 	ENST00000378487.2|CLLU1OS|ENSG00000205057.3|chronic lymphocytic leukemia up-regulated 1 opposite strand
hg19_v2_chr19_+_35417939_35417963	0.0546411	PAX8	ENST00000601142.1|ZNF30|ENSG00000168661.10|zinc finger protein 30 	ENST00000426813.2|ZNF30|ENSG00000168661.10|zinc finger protein 30
hg19_v2_chr19_+_40476912_40476939	0.0543939	PAX8	ENST00000157812.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr15_+_45028520_45028560	0.0536922	PAX8	ENST00000329464.4|TRIM69|ENSG00000185880.8|tripartite motif containing 69
hg19_v2_chr15_-_43785303_43785369	0.0532568	PAX8	ENST00000382039.3|TP53BP1|ENSG00000067369.9|tumor protein p53 binding protein 1 	ENST00000450115.2|TP53BP1|ENSG00000067369.9|tumor protein p53 binding protein 1 	ENST00000382044.4|TP53BP1|ENSG00000067369.9|tumor protein p53 binding protein 1
hg19_v2_chr6_+_160542821_160542852	0.0526579	PAX8	ENST00000366963.4|SLC22A1|ENSG00000175003.8|solute carrier family 22 (organic cation transporter), member 1
hg19_v2_chr6_+_63921399_63921462	0.0521828	PAX8	ENST00000356170.3|FKBP1C|ENSG00000198225.4|FK506 binding protein 1C
hg19_v2_chr17_+_7461781_7461820	0.0521413	PAX8	ENST00000349228.4|TNFSF13|ENSG00000161955.12|tumor necrosis factor (ligand) superfamily, member 13
hg19_v2_chr2_+_114195268_114195340	0.0520596	PAX8	ENST00000259199.4|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000416503.2|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000433343.2|CBWD2|ENSG00000136682.10|COBW domain containing 2
hg19_v2_chr3_-_178969403_178969418	0.051766	PAX8	ENST00000314235.5|KCNMB3|ENSG00000171121.12|potassium large conductance calcium-activated channel, subfamily M beta member 3 	ENST00000392685.2|KCNMB3|ENSG00000171121.12|potassium large conductance calcium-activated channel, subfamily M beta member 3
hg19_v2_chr14_-_54425475_54425500	0.0514573	PAX8	ENST00000559642.1|BMP4|ENSG00000125378.11|bone morphogenetic protein 4
hg19_v2_chr2_+_120301997_120302038	0.0514419	PAX8	ENST00000602047.1|PCDP1|ENSG00000163075.8|Primary ciliary dyskinesia protein 1
hg19_v2_chr2_-_179672142_179672157	0.0512856	PAX8	ENST00000342992.6|TTN|ENSG00000155657.19|titin 	ENST00000360870.5|TTN|ENSG00000155657.19|titin 	ENST00000460472.2|TTN|ENSG00000155657.19|titin 	ENST00000589042.1|TTN|ENSG00000155657.19|titin 	ENST00000591111.1|TTN|ENSG00000155657.19|titin 	ENST00000342175.6|TTN|ENSG00000155657.19|titin 	ENST00000359218.5|TTN|ENSG00000155657.19|titin
hg19_v2_chr6_+_14117872_14118012	0.0499282	PAX8	ENST00000379153.3|CD83|ENSG00000112149.5|CD83 molecule
hg19_v2_chr1_+_116915270_116915290	0.0498486	PAX8	ENST00000418797.1|ATP1A1|ENSG00000163399.11|ATPase, Na+/K+ transporting, alpha 1 polypeptide
hg19_v2_chr17_-_8301132_8301150	0.0497614	PAX8	ENST00000399398.2|RNF222|ENSG00000189051.5|ring finger protein 222
hg19_v2_chr17_+_30771279_30771536	0.0496075	PAX8	ENST00000261712.3|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000578213.1|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000457654.2|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENST00000579451.1|PSMD11|ENSG00000108671.5|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
hg19_v2_chr8_+_124428959_124428971	0.048886	PAX8	ENST00000287387.2|WDYHV1|ENSG00000156795.2|WDYHV motif containing 1 	ENST00000523984.1|WDYHV1|ENSG00000156795.2|WDYHV motif containing 1
hg19_v2_chr16_-_31519691_31519734	0.0488816	PAX8	ENST00000567994.1|C16orf58|ENSG00000140688.12|chromosome 16 open reading frame 58 	ENST00000430477.2|C16orf58|ENSG00000140688.12|chromosome 16 open reading frame 58 	ENST00000570164.1|C16orf58|ENSG00000140688.12|chromosome 16 open reading frame 58 	ENST00000327237.2|C16orf58|ENSG00000140688.12|chromosome 16 open reading frame 58
hg19_v2_chr12_+_78224667_78224685	0.0486431	PAX8	ENST00000549464.1|NAV3|ENSG00000067798.9|neuron navigator 3
hg19_v2_chr3_-_111852128_111852152	0.0482089	PAX8	ENST00000308910.4|GCSAM|ENSG00000174500.8|germinal center-associated, signaling and motility
hg19_v2_chr4_+_154073469_154073645	0.0481966	PAX8	ENST00000441616.1|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chrX_+_23925918_23925918	0.0480039	PAX8	ENST00000379211.3|CXorf58|ENSG00000165182.6|chromosome X open reading frame 58
hg19_v2_chr10_-_5638048_5638094	0.047936	PAX8	ENST00000478294.1|RP13-463N16.6|ENSG00000242147.1|RP13-463N16.6
hg19_v2_chr11_-_62609281_62609282	0.0473469	PAX8	ENST00000525239.1|WDR74|ENSG00000133316.11|WD repeat domain 74 	ENST00000538098.2|WDR74|ENSG00000133316.11|WD repeat domain 74
hg19_v2_chr2_-_3606206_3606206	0.0469676	PAX8	ENST00000315212.3|RNASEH1|ENSG00000171865.5|ribonuclease H1
hg19_v2_chr2_+_62900986_62901019	0.0468154	PAX8	ENST00000405015.3|EHBP1|ENSG00000115504.10|EH domain binding protein 1 	ENST00000413434.1|EHBP1|ENSG00000115504.10|EH domain binding protein 1 	ENST00000426940.1|EHBP1|ENSG00000115504.10|EH domain binding protein 1 	ENST00000449820.1|EHBP1|ENSG00000115504.10|EH domain binding protein 1
hg19_v2_chr19_-_55791563_55791749	0.0461319	PAX8	ENST00000588971.1|HSPBP1|ENSG00000133265.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 	ENST00000255631.5|HSPBP1|ENSG00000133265.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 	ENST00000587551.1|HSPBP1|ENSG00000133265.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
hg19_v2_chr6_+_135502501_135502652	0.045653	PAX8	ENST00000527615.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000420123.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000525369.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000528774.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534121.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534044.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000533624.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr5_+_140027355_140027476	0.0454018	PAX8	ENST00000417647.2|IK|ENSG00000113141.11|IK cytokine, down-regulator of HLA II 	ENST00000507593.1|IK|ENSG00000113141.11|IK cytokine, down-regulator of HLA II 	ENST00000508301.1|IK|ENSG00000113141.11|IK cytokine, down-regulator of HLA II
hg19_v2_chr19_+_29097595_29097640	0.0449424	PAX8	ENST00000587961.1|AC079466.1|ENSG00000266976.1|AC079466.1
hg19_v2_chr2_+_17721230_17721255	0.0447527	PAX8	ENST00000457525.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr15_-_72523924_72524164	0.0446645	PAX8	ENST00000566809.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000567087.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000569050.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000568883.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr9_+_706842_706889	0.0436812	PAX8	ENST00000382293.3|KANK1|ENSG00000107104.14|KN motif and ankyrin repeat domains 1
hg19_v2_chr5_+_140248518_140248689	0.0430694	PAX8	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chrM_+_4431_4475	0.042283	PAX8	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr1_+_145293371_145293371	0.04218	PAX8	ENST00000342960.5|NBPF10|ENSG00000163386.16|neuroblastoma breakpoint family, member 10
hg19_v2_chr11_+_82904858_82904918	0.0421063	PAX8	ENST00000260047.6|ANKRD42|ENSG00000137494.9|ankyrin repeat domain 42
hg19_v2_chr4_+_156680143_156680152	0.0415024	PAX8	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chrX_-_153141783_153141846	0.0414865	PAX8	ENST00000458029.1|L1CAM|ENSG00000198910.8|L1 cell adhesion molecule
hg19_v2_chr17_+_5031687_5031687	0.0413513	PAX8	ENST00000250066.6|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene) 	ENST00000304328.5|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene)
hg19_v2_chr3_-_127842612_127842680	0.040939	PAX8	ENST00000417360.1|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1 	ENST00000322623.5|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1
hg19_v2_chr4_-_89951028_89951062	0.0408983	PAX8	ENST00000506913.1|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr19_+_42301079_42301090	0.0406134	PAX8	ENST00000596544.1|CEACAM3|ENSG00000170956.12|carcinoembryonic antigen-related cell adhesion molecule 3
hg19_v2_chr3_-_49158218_49158264	0.0402933	PAX8	ENST00000417901.1|USP19|ENSG00000172046.14|ubiquitin specific peptidase 19 	ENST00000306026.5|USP19|ENSG00000172046.14|ubiquitin specific peptidase 19 	ENST00000434032.2|USP19|ENSG00000172046.14|ubiquitin specific peptidase 19
hg19_v2_chr10_+_24544249_24544276	0.0383238	PAX8	ENST00000430453.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr18_-_53068782_53068902	0.0378605	PAX8	ENST00000569012.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr12_-_21556577_21556599	0.0376126	PAX8	ENST00000450590.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000453443.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2
hg19_v2_chr13_+_49684445_49684517	0.0375981	PAX8	ENST00000398316.3|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chrX_+_74493896_74493970	0.0369979	PAX8	ENST00000373383.4|UPRT|ENSG00000094841.9|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) 	ENST00000373379.1|UPRT|ENSG00000094841.9|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)
hg19_v2_chr5_+_55147205_55147334	0.0368527	PAX8	ENST00000396836.2|IL31RA|ENSG00000164509.9|interleukin 31 receptor A 	ENST00000396834.1|IL31RA|ENSG00000164509.9|interleukin 31 receptor A 	ENST00000447346.2|IL31RA|ENSG00000164509.9|interleukin 31 receptor A 	ENST00000359040.5|IL31RA|ENSG00000164509.9|interleukin 31 receptor A
hg19_v2_chr11_+_82904746_82904832	0.0366735	PAX8	ENST00000393389.3|ANKRD42|ENSG00000137494.9|ankyrin repeat domain 42 	ENST00000528722.1|ANKRD42|ENSG00000137494.9|ankyrin repeat domain 42
hg19_v2_chr2_+_171036635_171036673	0.0364789	PAX8	ENST00000484338.2|MYO3B|ENSG00000071909.14|myosin IIIB 	ENST00000334231.6|MYO3B|ENSG00000071909.14|myosin IIIB
hg19_v2_chr12_-_95044309_95044390	0.0364617	PAX8	ENST00000261226.4|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr1_+_16083098_16083119	0.0360047	PAX8	ENST00000496928.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000508310.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr4_+_166128735_166128813	0.0359176	PAX8	ENST00000226725.6|KLHL2|ENSG00000109466.9|kelch-like family member 2
hg19_v2_chr11_+_9482512_9482534	0.034886	PAX8	ENST00000396602.2|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000530463.1|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000533542.1|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000532577.1|ZNF143|ENSG00000166478.5|zinc finger protein 143 	ENST00000396597.3|ZNF143|ENSG00000166478.5|zinc finger protein 143
hg19_v2_chr1_+_16083154_16083168	0.0339636	PAX8	ENST00000375771.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr10_+_17686193_17686220	0.0329924	PAX8	ENST00000377500.1|STAM|ENSG00000136738.10|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
hg19_v2_chr2_-_79386786_79386886	0.0326734	PAX8	ENST00000393878.1|REG3A|ENSG00000172016.11|regenerating islet-derived 3 alpha 	ENST00000305165.2|REG3A|ENSG00000172016.11|regenerating islet-derived 3 alpha 	ENST00000409839.3|REG3A|ENSG00000172016.11|regenerating islet-derived 3 alpha
hg19_v2_chr19_+_54704610_54704683	0.0325516	PAX8	ENST00000302907.4|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr10_-_116418053_116418062	0.0322341	PAX8	ENST00000277895.5|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr6_+_41196077_41196088	0.0320831	PAX8	ENST00000448827.2|TREML4|ENSG00000188056.7|triggering receptor expressed on myeloid cells-like 4
hg19_v2_chr7_+_95115210_95115217	0.0312309	PAX8	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr17_+_6918093_6918139	0.0306337	PAX8	ENST00000439424.2|C17orf49|ENSG00000258315.1|chromosome 17 open reading frame 49
hg19_v2_chr6_+_135502466_135502489	0.0305955	PAX8	ENST00000367814.4|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr7_-_137686791_137686821	0.0305555	PAX8	ENST00000452463.1|CREB3L2|ENSG00000182158.10|cAMP responsive element binding protein 3-like 2 	ENST00000330387.6|CREB3L2|ENSG00000182158.10|cAMP responsive element binding protein 3-like 2 	ENST00000456390.1|CREB3L2|ENSG00000182158.10|cAMP responsive element binding protein 3-like 2
hg19_v2_chr11_+_67055986_67056054	0.0300315	PAX8	ENST00000447274.2|ANKRD13D|ENSG00000172932.10|ankyrin repeat domain 13 family, member D
hg19_v2_chr11_+_5617858_5617934	0.0300015	PAX8	ENST00000380097.3|TRIM6|ENSG00000121236.15|tripartite motif containing 6
hg19_v2_chr3_-_189840223_189840229	0.0296417	PAX8	ENST00000427335.2|LEPREL1|ENSG00000090530.5|leprecan-like 1
hg19_v2_chr7_-_144533074_144533153	0.0288674	PAX8	ENST00000360057.3|TPK1|ENSG00000196511.9|thiamin pyrophosphokinase 1 	ENST00000378099.3|TPK1|ENSG00000196511.9|thiamin pyrophosphokinase 1
hg19_v2_chr11_+_63742050_63742104	0.0286646	PAX8	ENST00000314133.3|COX8A|ENSG00000176340.3|cytochrome c oxidase subunit VIIIA (ubiquitous) 	ENST00000535431.1|AP000721.4|ENSG00000256100.1|Uncharacterized protein
hg19_v2_chr12_-_56236734_56236788	0.0278313	PAX8	ENST00000548629.1|MMP19|ENSG00000123342.11|matrix metallopeptidase 19
hg19_v2_chr4_-_168155169_168155214	0.0277054	PAX8	ENST00000534949.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 	ENST00000535728.1|SPOCK3|ENSG00000196104.6|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
hg19_v2_chr1_+_171283331_171283373	0.0273481	PAX8	ENST00000367749.3|FMO4|ENSG00000076258.5|flavin containing monooxygenase 4
hg19_v2_chr1_-_8585945_8586056	0.0271703	PAX8	ENST00000377464.1|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr6_+_36853607_36853640	0.0265259	PAX8	ENST00000480824.2|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89 	ENST00000355190.3|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89 	ENST00000373685.1|C6orf89|ENSG00000198663.12|chromosome 6 open reading frame 89
hg19_v2_chr19_+_35630926_35631009	0.0261714	PAX8	ENST00000588081.1|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1 	ENST00000589121.1|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1
hg19_v2_chr13_+_76362974_76363015	0.0257952	PAX8	ENST00000497947.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr8_+_39792474_39792474	0.0257682	PAX8	ENST00000502986.2|IDO2|ENSG00000188676.9|indoleamine 2,3-dioxygenase 2
hg19_v2_chr18_-_53068940_53068951	0.0254076	PAX8	ENST00000562638.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr1_-_85156417_85156486	0.025386	PAX8	ENST00000422026.1|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr4_-_128887069_128887144	0.0252705	PAX8	ENST00000541133.1|MFSD8|ENSG00000164073.5|major facilitator superfamily domain containing 8 	ENST00000296468.3|MFSD8|ENSG00000164073.5|major facilitator superfamily domain containing 8 	ENST00000513559.1|MFSD8|ENSG00000164073.5|major facilitator superfamily domain containing 8
hg19_v2_chr1_+_100817262_100817290	0.0250349	PAX8	ENST00000455467.1|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr2_+_85661918_85661918	0.0240598	PAX8	ENST00000340326.2|SH2D6|ENSG00000152292.12|SH2 domain containing 6
hg19_v2_chr12_-_10251576_10251599	0.0233446	PAX8	ENST00000315330.4|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr11_+_107461804_107461882	0.0233181	PAX8	ENST00000531234.1|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1
hg19_v2_chr3_+_121796697_121796750	0.0232822	PAX8	ENST00000482356.1|CD86|ENSG00000114013.11|CD86 molecule 	ENST00000393627.2|CD86|ENSG00000114013.11|CD86 molecule
hg19_v2_chr3_-_49158312_49158373	0.0231351	PAX8	ENST00000398892.3|USP19|ENSG00000172046.14|ubiquitin specific peptidase 19 	ENST00000453664.1|USP19|ENSG00000172046.14|ubiquitin specific peptidase 19 	ENST00000398888.2|USP19|ENSG00000172046.14|ubiquitin specific peptidase 19
hg19_v2_chr1_+_154300217_154300276	0.0230331	PAX8	ENST00000368489.3|ATP8B2|ENSG00000143515.12|ATPase, aminophospholipid transporter, class I, type 8B, member 2
hg19_v2_chr12_-_10251603_10251619	0.0223985	PAX8	ENST00000457018.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr17_+_1665345_1665406	0.0220097	PAX8	ENST00000576406.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000571149.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr5_-_133510456_133510499	0.0218417	PAX8	ENST00000520417.1|SKP1|ENSG00000113558.14|S-phase kinase-associated protein 1
hg19_v2_chr5_+_140235469_140235634	0.0213928	PAX8	ENST00000506939.2|PCDHA10|ENSG00000250120.2|protocadherin alpha 10 	ENST00000307360.5|PCDHA10|ENSG00000250120.2|protocadherin alpha 10
hg19_v2_chr12_-_10251539_10251560	0.0212701	PAX8	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr7_-_112430427_112430478	0.0205083	PAX8	ENST00000449743.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000441474.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000454074.1|TMEM168|ENSG00000146802.8|transmembrane protein 168 	ENST00000447395.1|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr4_+_118955500_118955612	0.0203081	PAX8	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr11_+_7618413_7618427	0.0200808	PAX8	ENST00000528883.1|PPFIBP2|ENSG00000166387.7|PTPRF interacting protein, binding protein 2 (liprin beta 2)
hg19_v2_chrY_-_20935572_20935621	0.0195083	PAX8	ENST00000382852.1|HSFY2|ENSG00000169953.11|heat shock transcription factor, Y linked 2 	ENST00000344884.4|HSFY2|ENSG00000169953.11|heat shock transcription factor, Y linked 2 	ENST00000304790.3|HSFY2|ENSG00000169953.11|heat shock transcription factor, Y linked 2
hg19_v2_chr8_+_124429006_124429076	0.0188256	PAX8	ENST00000522194.1|WDYHV1|ENSG00000156795.2|WDYHV motif containing 1 	ENST00000523356.1|WDYHV1|ENSG00000156795.2|WDYHV motif containing 1
hg19_v2_chr11_+_60609537_60609567	0.0187699	PAX8	ENST00000227520.5|CCDC86|ENSG00000110104.7|coiled-coil domain containing 86
hg19_v2_chr19_+_54704718_54704742	0.0184251	PAX8	ENST00000391752.1|RPS9|ENSG00000170889.9|ribosomal protein S9 	ENST00000402367.1|RPS9|ENSG00000170889.9|ribosomal protein S9 	ENST00000391751.3|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr1_+_160709029_160709047	0.0181396	PAX8	ENST00000444090.2|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000441662.2|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr17_-_60883993_60884014	0.017795	PAX8	ENST00000583803.1|MARCH10|ENSG00000173838.7|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase 	ENST00000456609.2|MARCH10|ENSG00000173838.7|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase
hg19_v2_chr2_-_37193606_37193633	0.017615	PAX8	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chrX_-_23926004_23926072	0.0174137	PAX8	ENST00000379226.4|APOO|ENSG00000184831.9|apolipoprotein O 	ENST00000379220.3|APOO|ENSG00000184831.9|apolipoprotein O
hg19_v2_chr1_+_367640_367640	0.0170078	PAX8	ENST00000426406.1|OR4F29|ENSG00000235249.1|olfactory receptor, family 4, subfamily F, member 29
hg19_v2_chr13_-_95131923_95131944	0.0166135	PAX8	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr17_-_67057203_67057228	0.0162672	PAX8	ENST00000340001.4|ABCA9|ENSG00000154258.12|ATP-binding cassette, sub-family A (ABC1), member 9
hg19_v2_chr12_+_53689309_53689366	0.0152366	PAX8	ENST00000351500.3|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000550846.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000334478.4|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000549759.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5
hg19_v2_chr18_-_53068911_53068935	0.0152071	PAX8	ENST00000537856.3|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chrY_+_20708557_20708606	0.0148864	PAX8	ENST00000307393.2|HSFY1|ENSG00000172468.9|heat shock transcription factor, Y-linked 1 	ENST00000309834.4|HSFY1|ENSG00000172468.9|heat shock transcription factor, Y-linked 1 	ENST00000382856.2|HSFY1|ENSG00000172468.9|heat shock transcription factor, Y-linked 1
hg19_v2_chr20_+_5931497_5931592	0.0140822	PAX8	ENST00000378886.2|MCM8|ENSG00000125885.9|minichromosome maintenance complex component 8 	ENST00000265187.4|MCM8|ENSG00000125885.9|minichromosome maintenance complex component 8
hg19_v2_chr4_-_70361579_70361600	0.0140088	PAX8	ENST00000512583.1|UGT2B4|ENSG00000156096.8|UDP glucuronosyltransferase 2 family, polypeptide B4
hg19_v2_chr1_-_25256368_25256476	0.0139453	PAX8	ENST00000308873.6|RUNX3|ENSG00000020633.14|runt-related transcription factor 3
hg19_v2_chr15_-_73925651_73925773	0.0138478	PAX8	ENST00000545878.1|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000287226.8|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000345330.4|NPTN|ENSG00000156642.12|neuroplastin
hg19_v2_chr11_+_1092184_1092208	0.0131954	PAX8	ENST00000361558.6|MUC2|ENSG00000198788.7|mucin 2, oligomeric mucus/gel-forming
hg19_v2_chr18_-_29264669_29264717	0.0131217	PAX8	ENST00000306851.5|B4GALT6|ENSG00000118276.7|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6
hg19_v2_chr12_+_113229962_113230003	0.012818	PAX8	ENST00000553114.1|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse) 	ENST00000548866.1|RPH3A|ENSG00000089169.10|rabphilin 3A homolog (mouse)
hg19_v2_chr12_+_122516626_122516645	0.0128012	PAX8	ENST00000319080.7|MLXIP|ENSG00000175727.9|MLX interacting protein
hg19_v2_chr11_+_117857063_117857121	0.0126894	PAX8	ENST00000227752.3|IL10RA|ENSG00000110324.5|interleukin 10 receptor, alpha 	ENST00000541785.1|IL10RA|ENSG00000110324.5|interleukin 10 receptor, alpha 	ENST00000545409.1|IL10RA|ENSG00000110324.5|interleukin 10 receptor, alpha
hg19_v2_chr1_-_27952741_27952753	0.0121843	PAX8	ENST00000399173.1|FGR|ENSG00000000938.8|feline Gardner-Rasheed sarcoma viral oncogene homolog
hg19_v2_chr6_+_117198400_117198441	0.0121601	PAX8	ENST00000332958.2|RFX6|ENSG00000185002.5|regulatory factor X, 6
hg19_v2_chr16_+_30772913_30773066	0.0117917	PAX8	ENST00000563909.1|RNF40|ENSG00000103549.17|ring finger protein 40, E3 ubiquitin protein ligase
hg19_v2_chr7_-_112430647_112430776	0.0114834	PAX8	ENST00000312814.6|TMEM168|ENSG00000146802.8|transmembrane protein 168
hg19_v2_chr3_-_150264272_150264428	0.0114148	PAX8	ENST00000491660.1|SERP1|ENSG00000120742.6|stress-associated endoplasmic reticulum protein 1 	ENST00000487153.1|SERP1|ENSG00000120742.6|stress-associated endoplasmic reticulum protein 1 	ENST00000239944.2|SERP1|ENSG00000120742.6|stress-associated endoplasmic reticulum protein 1
hg19_v2_chr8_-_7243080_7243080	0.0111257	PAX8	ENST00000400156.4|ZNF705G|ENSG00000215372.5|zinc finger protein 705G
hg19_v2_chr10_-_126694575_126694592	0.0108646	PAX8	ENST00000334808.6|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr1_+_44889697_44889716	0.0101135	PAX8	ENST00000443020.2|RNF220|ENSG00000187147.13|ring finger protein 220
hg19_v2_chr15_-_29745003_29745158	0.00990597	PAX8	ENST00000560082.1|FAM189A1|ENSG00000104059.4|family with sequence similarity 189, member A1
hg19_v2_chr20_-_5931109_5931212	0.00987012	PAX8	ENST00000203001.2|TRMT6|ENSG00000089195.10|tRNA methyltransferase 6 homolog (S. cerevisiae)
hg19_v2_chr7_+_6713376_6713424	0.00978318	PAX8	ENST00000399484.3|AC073343.1|ENSG00000198580.6|Uncharacterized protein  	ENST00000544825.1|AC073343.1|ENSG00000198580.6|Uncharacterized protein  	ENST00000401847.1|AC073343.1|ENSG00000198580.6|Uncharacterized protein
hg19_v2_chr19_+_52901094_52901134	0.0096168	PAX8	ENST00000391788.2|ZNF528|ENSG00000167555.9|zinc finger protein 528 	ENST00000436397.1|ZNF528|ENSG00000167555.9|zinc finger protein 528 	ENST00000391787.2|ZNF528|ENSG00000167555.9|zinc finger protein 528 	ENST00000360465.3|ZNF528|ENSG00000167555.9|zinc finger protein 528 	ENST00000494167.2|ZNF528|ENSG00000167555.9|zinc finger protein 528 	ENST00000493272.1|ZNF528|ENSG00000167555.9|zinc finger protein 528
hg19_v2_chr17_-_33760269_33760302	0.0096112	PAX8	ENST00000452764.3|SLFN12|ENSG00000172123.8|schlafen family member 12
hg19_v2_chr10_+_96443378_96443430	0.00936796	PAX8	ENST00000285979.6|CYP2C18|ENSG00000108242.8|cytochrome P450, family 2, subfamily C, polypeptide 18
hg19_v2_chr15_-_89010607_89010650	0.00933756	PAX8	ENST00000312475.4|MRPL46|ENSG00000259494.1|mitochondrial ribosomal protein L46
hg19_v2_chr1_-_27952617_27952652	0.00930675	PAX8	ENST00000457296.1|FGR|ENSG00000000938.8|feline Gardner-Rasheed sarcoma viral oncogene homolog
hg19_v2_chr11_+_20044096_20044116	0.00924223	PAX8	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr19_-_6057282_6057313	0.00915398	PAX8	ENST00000592281.1|RFX2|ENSG00000087903.8|regulatory factor X, 2 (influences HLA class II expression)
hg19_v2_chr14_+_23938891_23938953	0.00868634	PAX8	ENST00000408901.3|NGDN|ENSG00000129460.11|neuroguidin, EIF4E binding protein 	ENST00000397154.3|NGDN|ENSG00000129460.11|neuroguidin, EIF4E binding protein 	ENST00000555128.1|NGDN|ENSG00000129460.11|neuroguidin, EIF4E binding protein
hg19_v2_chr21_-_30047095_30047177	0.00849521	PAX8	ENST00000452028.1|AF131217.1|ENSG00000232855.2|AF131217.1	ENST00000433310.2|AF131217.1|ENSG00000232855.2|AF131217.1
hg19_v2_chr11_-_62457371_62457371	0.00833521	PAX8	ENST00000317449.4|LRRN4CL|ENSG00000177363.4|LRRN4 C-terminal like
hg19_v2_chr15_-_49255632_49255650	0.00810793	PAX8	ENST00000332408.4|SHC4|ENSG00000185634.7|SHC (Src homology 2 domain containing) family, member 4
hg19_v2_chr6_+_135502408_135502459	0.00792185	PAX8	ENST00000341911.5|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000442647.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000316528.8|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr6_-_6711235_6711379	0.00753154	PAX8	ENST00000432823.2|RP1-80N2.2|ENSG00000226281.2|RP1-80N2.2
hg19_v2_chr18_+_43405471_43405485	0.00718847	PAX8	ENST00000389474.3|SIGLEC15|ENSG00000197046.7|sialic acid binding Ig-like lectin 15
hg19_v2_chr13_+_31309645_31309726	0.00686592	PAX8	ENST00000380490.3|ALOX5AP|ENSG00000132965.5|arachidonate 5-lipoxygenase-activating protein
hg19_v2_chr15_+_23810853_23810864	0.00660474	PAX8	ENST00000568252.1|MKRN3|ENSG00000179455.6|makorin ring finger protein 3
hg19_v2_chr12_+_128399917_128399958	0.0061797	PAX8	ENST00000544645.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507
hg19_v2_chr16_-_18911366_18911366	0.00617768	PAX8	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr17_-_73505961_73505976	0.00552093	PAX8	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr19_+_50169216_50169285	0.00520288	PAX8	ENST00000594157.1|BCL2L12|ENSG00000126453.5|BCL2-like 12 (proline rich) 	ENST00000600947.1|BCL2L12|ENSG00000126453.5|BCL2-like 12 (proline rich) 	ENST00000598306.1|BCL2L12|ENSG00000126453.5|BCL2-like 12 (proline rich)
hg19_v2_chr4_+_2800291_2800332	0.00508577	PAX8	ENST00000504294.1|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2
hg19_v2_chr4_-_16077741_16077760	0.00484215	PAX8	ENST00000447510.2|PROM1|ENSG00000007062.7|prominin 1 	ENST00000540805.1|PROM1|ENSG00000007062.7|prominin 1 	ENST00000539194.1|PROM1|ENSG00000007062.7|prominin 1
hg19_v2_chr8_-_53322303_53322340	0.00431976	PAX8	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr7_+_140396465_140396548	0.00415456	PAX8	ENST00000476279.1|NDUFB2|ENSG00000090266.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 	ENST00000247866.4|NDUFB2|ENSG00000090266.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 	ENST00000461457.1|NDUFB2|ENSG00000090266.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 	ENST00000465506.1|NDUFB2|ENSG00000090266.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 	ENST00000204307.5|NDUFB2|ENSG00000090266.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 	ENST00000464566.1|NDUFB2|ENSG00000090266.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa
hg19_v2_chr17_+_7462031_7462086	0.00412229	PAX8	ENST00000380535.4|TNFSF13|ENSG00000161955.12|tumor necrosis factor (ligand) superfamily, member 13
hg19_v2_chr8_+_59323823_59323947	0.00410408	PAX8	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr11_-_1033062_1033209	0.00409782	PAX8	ENST00000525923.1|MUC6|ENSG00000184956.11|mucin 6, oligomeric mucus/gel-forming
hg19_v2_chr1_+_203734296_203734318	0.00372644	PAX8	ENST00000442561.2|LAX1|ENSG00000122188.8|lymphocyte transmembrane adaptor 1 	ENST00000367217.5|LAX1|ENSG00000122188.8|lymphocyte transmembrane adaptor 1
hg19_v2_chr12_-_50294033_50294044	0.00369786	PAX8	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr2_-_77749387_77749405	0.00353786	PAX8	ENST00000409884.1|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4
hg19_v2_chr5_+_69321074_69321200	0.00317438	PAX8	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr4_-_145061788_145061904	0.00316351	PAX8	ENST00000512064.1|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group) 	ENST00000512789.1|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group) 	ENST00000504786.1|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group) 	ENST00000503627.1|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group) 	ENST00000535709.1|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group) 	ENST00000283126.7|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000324022.10|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group) 	ENST00000360771.4|GYPA|ENSG00000170180.15|glycophorin A (MNS blood group)
hg19_v2_chr11_-_18063973_18063973	0.00294784	PAX8	ENST00000528338.1|TPH1|ENSG00000129167.5|tryptophan hydroxylase 1
hg19_v2_chr11_-_2170786_2170833	0.00205165	PAX8	ENST00000300632.5|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr4_+_123653882_123653965	0.00198183	PAX8	ENST00000433287.1|BBS12|ENSG00000181004.5|Bardet-Biedl syndrome 12
hg19_v2_chr15_-_35088340_35088340	0.00183518	PAX8	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chr14_-_107114267_107114277	0.00174973	PAX8	ENST00000454421.2|IGHV3-64|ENSG00000223648.2|immunoglobulin heavy variable 3-64
hg19_v2_chr1_+_100818156_100818210	0.00146738	PAX8	ENST00000336454.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr5_+_128300810_128300821	0.00129378	PAX8	ENST00000262462.4|SLC27A6|ENSG00000113396.8|solute carrier family 27 (fatty acid transporter), member 6
hg19_v2_chr12_-_53074182_53074197	0.00102829	PAX8	ENST00000252244.3|KRT1|ENSG00000167768.4|keratin 1
hg19_v2_chr17_-_67057114_67057136	0.00092423	PAX8	ENST00000370732.2|ABCA9|ENSG00000154258.12|ATP-binding cassette, sub-family A (ABC1), member 9
hg19_v2_chr12_+_128399965_128400017	0.000665929	PAX8	ENST00000540882.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507 	ENST00000542089.1|LINC00507|ENSG00000256193.1|long intergenic non-protein coding RNA 507
hg19_v2_chr19_+_18794470_18794512	0.000483395	PAX8	ENST00000321949.8|CRTC1|ENSG00000105662.11|CREB regulated transcription coactivator 1 	ENST00000338797.6|CRTC1|ENSG00000105662.11|CREB regulated transcription coactivator 1
hg19_v2_chr1_+_197382957_197382964	0.000239522	PAX8	ENST00000367397.1|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila)
