hg19_v2_chr8_+_86999516_86999552	0.772239	OTX2_CRX	ENST00000521564.1|ATP6V0D2|ENSG00000147614.3|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2
hg19_v2_chr17_-_4689649_4689693	0.764382	OTX2_CRX	ENST00000441199.2|VMO1|ENSG00000182853.7|vitelline membrane outer layer 1 homolog (chicken) 	ENST00000416307.2|VMO1|ENSG00000182853.7|vitelline membrane outer layer 1 homolog (chicken)
hg19_v2_chr6_+_130339710_130339745	0.700481	OTX2_CRX	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr1_+_207277632_207277676	0.605903	OTX2_CRX	ENST00000421786.1|C4BPA|ENSG00000123838.6|complement component 4 binding protein, alpha
hg19_v2_chr17_+_4643337_4643345	0.605687	OTX2_CRX	ENST00000592813.1|ZMYND15|ENSG00000141497.9|zinc finger, MYND-type containing 15
hg19_v2_chr14_-_95236551_95236576	0.578585	OTX2_CRX	ENST00000238558.3|GSC|ENSG00000133937.3|goosecoid homeobox
hg19_v2_chr17_-_4643161_4643241	0.53313	OTX2_CRX	ENST00000574412.1|CXCL16|ENSG00000161921.10|chemokine (C-X-C motif) ligand 16
hg19_v2_chr14_-_22005062_22005082	0.526487	OTX2_CRX	ENST00000317492.5|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr15_+_44092784_44092823	0.514204	OTX2_CRX	ENST00000458412.1|HYPK|ENSG00000242028.1|huntingtin interacting protein K
hg19_v2_chr6_+_34433844_34433921	0.51174	OTX2_CRX	ENST00000244458.2|PACSIN1|ENSG00000124507.6|protein kinase C and casein kinase substrate in neurons 1 	ENST00000374043.2|PACSIN1|ENSG00000124507.6|protein kinase C and casein kinase substrate in neurons 1
hg19_v2_chr7_-_100171270_100171270	0.447546	OTX2_CRX	ENST00000538735.1|SAP25|ENSG00000205307.6|Sin3A-associated protein, 25kDa
hg19_v2_chr17_-_4689727_4689745	0.441501	OTX2_CRX	ENST00000328739.5|VMO1|ENSG00000182853.7|vitelline membrane outer layer 1 homolog (chicken) 	ENST00000354194.4|VMO1|ENSG00000182853.7|vitelline membrane outer layer 1 homolog (chicken)
hg19_v2_chr19_-_55866104_55866182	0.439562	OTX2_CRX	ENST00000326529.4|COX6B2|ENSG00000160471.8|cytochrome c oxidase subunit VIb polypeptide 2 (testis)
hg19_v2_chr5_+_63461642_63461722	0.434728	OTX2_CRX	ENST00000296615.6|RNF180|ENSG00000164197.7|ring finger protein 180 	ENST00000381081.2|RNF180|ENSG00000164197.7|ring finger protein 180 	ENST00000389100.4|RNF180|ENSG00000164197.7|ring finger protein 180
hg19_v2_chr16_-_58004992_58005021	0.417051	OTX2_CRX	ENST00000564448.1|CNGB1|ENSG00000070729.9|cyclic nucleotide gated channel beta 1 	ENST00000251102.8|CNGB1|ENSG00000070729.9|cyclic nucleotide gated channel beta 1 	ENST00000311183.4|CNGB1|ENSG00000070729.9|cyclic nucleotide gated channel beta 1
hg19_v2_chr17_-_4643114_4643144	0.406646	OTX2_CRX	ENST00000293778.6|CXCL16|ENSG00000161921.10|chemokine (C-X-C motif) ligand 16
hg19_v2_chr19_-_55866061_55866103	0.395788	OTX2_CRX	ENST00000588572.2|COX6B2|ENSG00000160471.8|cytochrome c oxidase subunit VIb polypeptide 2 (testis) 	ENST00000593184.1|COX6B2|ENSG00000160471.8|cytochrome c oxidase subunit VIb polypeptide 2 (testis) 	ENST00000589467.1|COX6B2|ENSG00000160471.8|cytochrome c oxidase subunit VIb polypeptide 2 (testis)
hg19_v2_chr7_+_73868220_73868300	0.384578	OTX2_CRX	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr3_-_54962100_54962107	0.382721	OTX2_CRX	ENST00000273286.5|LRTM1|ENSG00000144771.7|leucine-rich repeats and transmembrane domains 1
hg19_v2_chr17_-_48207115_48207152	0.363571	OTX2_CRX	ENST00000511964.1|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14
hg19_v2_chr1_+_180875711_180875787	0.362987	OTX2_CRX	ENST00000434447.1|RP11-46A10.2|ENSG00000225857.1|RP11-46A10.2
hg19_v2_chr13_-_31191642_31191749	0.349683	OTX2_CRX	ENST00000405805.1|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr3_+_111393659_111393769	0.349404	OTX2_CRX	ENST00000477665.1|PLCXD2|ENSG00000240891.2|phosphatidylinositol-specific phospholipase C, X domain containing 2
hg19_v2_chr17_+_4643300_4643329	0.34875	OTX2_CRX	ENST00000433935.1|ZMYND15|ENSG00000141497.9|zinc finger, MYND-type containing 15
hg19_v2_chr5_+_138209688_138209727	0.34667	OTX2_CRX	ENST00000518381.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chrM_+_8366_8398	0.340347	OTX2_CRX	ENST00000361851.1|MT-ATP8|ENSG00000228253.1|mitochondrially encoded ATP synthase 8
hg19_v2_chr16_-_31076332_31076409	0.334077	OTX2_CRX	ENST00000539836.3|ZNF668|ENSG00000167394.8|zinc finger protein 668 	ENST00000535577.1|ZNF668|ENSG00000167394.8|zinc finger protein 668 	ENST00000442862.2|ZNF668|ENSG00000167394.8|zinc finger protein 668
hg19_v2_chr12_+_85673868_85673885	0.328302	OTX2_CRX	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr17_+_68100989_68101026	0.310341	OTX2_CRX	ENST00000585558.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392670.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr16_-_31076273_31076290	0.308406	OTX2_CRX	ENST00000426488.2|ZNF668|ENSG00000167394.8|zinc finger protein 668
hg19_v2_chr3_-_149095652_149095652	0.288576	OTX2_CRX	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr12_+_78224667_78224685	0.272875	OTX2_CRX	ENST00000549464.1|NAV3|ENSG00000067798.9|neuron navigator 3
hg19_v2_chr1_+_200863949_200864004	0.267209	OTX2_CRX	ENST00000413687.2|C1orf106|ENSG00000163362.6|chromosome 1 open reading frame 106
hg19_v2_chr15_+_96869165_96869183	0.26111	OTX2_CRX	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr19_+_48325097_48325211	0.258343	OTX2_CRX	ENST00000221996.7|CRX|ENSG00000105392.11|cone-rod homeobox 	ENST00000539067.1|CRX|ENSG00000105392.11|cone-rod homeobox
hg19_v2_chr5_-_41510656_41510713	0.253202	OTX2_CRX	ENST00000377801.3|PLCXD3|ENSG00000182836.5|phosphatidylinositol-specific phospholipase C, X domain containing 3
hg19_v2_chrX_-_21676442_21676453	0.245615	OTX2_CRX	ENST00000379499.2|KLHL34|ENSG00000185915.4|kelch-like family member 34
hg19_v2_chr8_+_54764346_54764460	0.235531	OTX2_CRX	ENST00000297313.3|RGS20|ENSG00000147509.9|regulator of G-protein signaling 20 	ENST00000344277.6|RGS20|ENSG00000147509.9|regulator of G-protein signaling 20
hg19_v2_chr7_-_17500294_17500304	0.217026	OTX2_CRX	ENST00000439046.1|AC019117.2|ENSG00000236039.1|AC019117.2
hg19_v2_chr19_-_55865908_55866059	0.216783	OTX2_CRX	ENST00000590900.1|COX6B2|ENSG00000160471.8|cytochrome c oxidase subunit VIb polypeptide 2 (testis)
hg19_v2_chr17_-_48207157_48207246	0.209672	OTX2_CRX	ENST00000330175.4|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14 	ENST00000503131.1|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14
hg19_v2_chr1_-_150208498_150208509	0.204965	OTX2_CRX	ENST00000314136.8|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr16_+_21623392_21623423	0.203678	OTX2_CRX	ENST00000562961.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr1_+_164528616_164528660	0.202485	OTX2_CRX	ENST00000340699.3|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr3_+_129247479_129247493	0.18983	OTX2_CRX	ENST00000296271.3|RHO|ENSG00000163914.4|rhodopsin
hg19_v2_chr6_-_33297013_33297063	0.188716	OTX2_CRX	ENST00000453407.1|DAXX|ENSG00000204209.6|death-domain associated protein
hg19_v2_chr3_-_186262166_186262240	0.183144	OTX2_CRX	ENST00000307944.5|CRYGS|ENSG00000213139.3|crystallin, gamma S
hg19_v2_chr9_+_103204553_103204560	0.182647	OTX2_CRX	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough 	ENST00000334943.6|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr13_+_73632897_73632930	0.181073	OTX2_CRX	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr7_-_128415844_128415849	0.181063	OTX2_CRX	ENST00000249389.2|OPN1SW|ENSG00000128617.2|opsin 1 (cone pigments), short-wave-sensitive
hg19_v2_chr10_-_126716459_126716571	0.179554	OTX2_CRX	ENST00000309035.6|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr9_-_13279563_13279584	0.178705	OTX2_CRX	ENST00000541718.1|MPDZ|ENSG00000107186.12|multiple PDZ domain protein
hg19_v2_chrX_+_129473859_129473904	0.177806	OTX2_CRX	ENST00000424447.1|SLC25A14|ENSG00000102078.11|solute carrier family 25 (mitochondrial carrier, brain), member 14
hg19_v2_chr4_-_102268708_102268743	0.176884	OTX2_CRX	ENST00000525819.1|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr14_-_67981870_67981913	0.174357	OTX2_CRX	ENST00000555994.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr13_-_52027134_52027343	0.165924	OTX2_CRX	ENST00000311234.4|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000425000.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000463928.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000442263.3|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000398119.2|INTS6|ENSG00000102786.10|integrator complex subunit 6
hg19_v2_chr5_-_41510725_41510738	0.156038	OTX2_CRX	ENST00000328457.3|PLCXD3|ENSG00000182836.5|phosphatidylinositol-specific phospholipase C, X domain containing 3
hg19_v2_chr21_-_34915123_34915145	0.155805	OTX2_CRX	ENST00000438059.1|GART|ENSG00000159131.12|phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
hg19_v2_chr8_-_42360015_42360146	0.151144	OTX2_CRX	ENST00000522707.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr12_-_13248598_13248630	0.147885	OTX2_CRX	ENST00000337630.6|GSG1|ENSG00000111305.14|germ cell associated 1 	ENST00000545699.1|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr14_-_67981916_67982021	0.145145	OTX2_CRX	ENST00000357461.2|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr15_-_27184664_27184686	0.145025	OTX2_CRX	ENST00000541819.2|GABRB3|ENSG00000166206.9|gamma-aminobutyric acid (GABA) A receptor, beta 3
hg19_v2_chr4_-_15661474_15661499	0.143297	OTX2_CRX	ENST00000509314.1|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000503196.1|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr22_-_38480100_38480159	0.14216	OTX2_CRX	ENST00000427592.1|SLC16A8|ENSG00000100156.6|solute carrier family 16 (monocarboxylate transporter), member 8
hg19_v2_chr9_-_131486367_131486413	0.13709	OTX2_CRX	ENST00000372663.4|ZDHHC12|ENSG00000160446.14|zinc finger, DHHC-type containing 12 	ENST00000406904.2|ZDHHC12|ENSG00000160446.14|zinc finger, DHHC-type containing 12 	ENST00000452105.1|ZDHHC12|ENSG00000160446.14|zinc finger, DHHC-type containing 12 	ENST00000372672.2|ZDHHC12|ENSG00000160446.14|zinc finger, DHHC-type containing 12 	ENST00000372667.5|ZDHHC12|ENSG00000160446.14|zinc finger, DHHC-type containing 12
hg19_v2_chr1_-_150208412_150208467	0.136992	OTX2_CRX	ENST00000532744.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369114.5|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369115.2|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369116.4|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr19_-_59066452_59066496	0.134101	OTX2_CRX	ENST00000312547.2|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr9_-_13279589_13279629	0.132127	OTX2_CRX	ENST00000319217.7|MPDZ|ENSG00000107186.12|multiple PDZ domain protein
hg19_v2_chr7_-_83824449_83824496	0.129947	OTX2_CRX	ENST00000420047.1|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr6_-_170599561_170599561	0.129764	OTX2_CRX	ENST00000366756.3|DLL1|ENSG00000198719.7|delta-like 1 (Drosophila)
hg19_v2_chr19_-_44123734_44123796	0.129388	OTX2_CRX	ENST00000598676.1|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr11_-_111794446_111794471	0.128836	OTX2_CRX	ENST00000527950.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr14_-_36789783_36789860	0.128014	OTX2_CRX	ENST00000605579.1|MBIP|ENSG00000151332.14|MAP3K12 binding inhibitory protein 1 	ENST00000604336.1|MBIP|ENSG00000151332.14|MAP3K12 binding inhibitory protein 1 	ENST00000359527.7|MBIP|ENSG00000151332.14|MAP3K12 binding inhibitory protein 1 	ENST00000603139.1|MBIP|ENSG00000151332.14|MAP3K12 binding inhibitory protein 1 	ENST00000318473.7|MBIP|ENSG00000151332.14|MAP3K12 binding inhibitory protein 1
hg19_v2_chr9_-_39288092_39288300	0.127741	OTX2_CRX	ENST00000323947.7|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3 	ENST00000297668.6|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3 	ENST00000377656.2|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3 	ENST00000377659.1|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3
hg19_v2_chr2_-_230787879_230787955	0.127421	OTX2_CRX	ENST00000435716.1|TRIP12|ENSG00000153827.9|thyroid hormone receptor interactor 12
hg19_v2_chr2_-_119605253_119605264	0.126171	OTX2_CRX	ENST00000295206.6|EN1|ENSG00000163064.6|engrailed homeobox 1
hg19_v2_chr11_-_75017734_75017755	0.122895	OTX2_CRX	ENST00000532525.1|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr12_+_58138800_58138860	0.122663	OTX2_CRX	ENST00000547992.1|TSPAN31|ENSG00000135452.5|tetraspanin 31 	ENST00000552816.1|TSPAN31|ENSG00000135452.5|tetraspanin 31 	ENST00000547472.1|TSPAN31|ENSG00000135452.5|tetraspanin 31
hg19_v2_chr9_+_82188077_82188177	0.122381	OTX2_CRX	ENST00000425506.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr3_-_50649192_50649262	0.122088	OTX2_CRX	ENST00000443053.2|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein 	ENST00000348721.3|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein
hg19_v2_chr12_+_133757995_133758114	0.119727	OTX2_CRX	ENST00000536435.2|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000228289.5|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000541211.2|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000500625.3|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000539248.2|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000542711.2|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000536899.2|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000542986.2|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000537565.1|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000541975.2|ZNF268|ENSG00000090612.16|zinc finger protein 268
hg19_v2_chr7_-_17598506_17598533	0.117186	OTX2_CRX	ENST00000451792.1|AC017060.1|ENSG00000226598.1|AC017060.1
hg19_v2_chr6_+_54173227_54173371	0.116552	OTX2_CRX	ENST00000259782.4|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen 	ENST00000370864.3|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen
hg19_v2_chr4_+_187813673_187813706	0.115992	OTX2_CRX	ENST00000606881.1|RP11-11N5.3|ENSG00000272218.1|RP11-11N5.3
hg19_v2_chr14_-_58894332_58894380	0.114687	OTX2_CRX	ENST00000395159.2|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr7_+_73868439_73868450	0.11384	OTX2_CRX	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr11_+_72975578_72975584	0.113103	OTX2_CRX	ENST00000393592.2|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr22_-_30867973_30868036	0.112515	OTX2_CRX	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr1_+_11751748_11751798	0.112437	OTX2_CRX	ENST00000294485.5|DRAXIN|ENSG00000162490.6|dorsal inhibitory axon guidance protein
hg19_v2_chr2_-_61765315_61765422	0.112264	OTX2_CRX	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr4_+_129730947_129730999	0.111904	OTX2_CRX	ENST00000452328.2|PHF17|ENSG00000077684.11|jade family PHD finger 1 	ENST00000504089.1|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chr3_-_98241358_98241489	0.110985	OTX2_CRX	ENST00000503004.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000506575.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000513452.1|CLDND1|ENSG00000080822.12|claudin domain containing 1 	ENST00000515620.1|CLDND1|ENSG00000080822.12|claudin domain containing 1
hg19_v2_chr15_+_43885252_43885294	0.110593	OTX2_CRX	ENST00000453782.1|CKMT1B|ENSG00000237289.5|creatine kinase, mitochondrial 1B 	ENST00000300283.6|CKMT1B|ENSG00000237289.5|creatine kinase, mitochondrial 1B 	ENST00000437924.1|CKMT1B|ENSG00000237289.5|creatine kinase, mitochondrial 1B 	ENST00000450086.2|CKMT1B|ENSG00000237289.5|creatine kinase, mitochondrial 1B
hg19_v2_chr2_+_55746722_55746740	0.11045	OTX2_CRX	ENST00000339012.3|CCDC104|ENSG00000163001.7|coiled-coil domain containing 104
hg19_v2_chr5_+_173316341_173316363	0.109623	OTX2_CRX	ENST00000520867.1|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4 	ENST00000334035.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chr1_-_150208363_150208386	0.108328	OTX2_CRX	ENST00000436748.2|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr12_-_52604607_52604639	0.107622	OTX2_CRX	ENST00000551894.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80 	ENST00000553017.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80
hg19_v2_chr4_+_129730839_129730904	0.107532	OTX2_CRX	ENST00000511647.1|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chr14_-_83262540_83262572	0.107066	OTX2_CRX	ENST00000554451.1|RP11-11K13.1|ENSG00000258683.1|RP11-11K13.1
hg19_v2_chrM_+_10758_10771	0.106034	OTX2_CRX	ENST00000361381.2|MT-ND4|ENSG00000198886.2|mitochondrially encoded NADH dehydrogenase 4
hg19_v2_chr14_-_101034407_101034487	0.104086	OTX2_CRX	ENST00000443071.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated 	ENST00000557378.1|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr12_+_58138664_58138789	0.103449	OTX2_CRX	ENST00000257910.3|TSPAN31|ENSG00000135452.5|tetraspanin 31
hg19_v2_chr15_+_43985084_43985098	0.1028	OTX2_CRX	ENST00000434505.1|CKMT1A|ENSG00000223572.5|creatine kinase, mitochondrial 1A 	ENST00000411750.1|CKMT1A|ENSG00000223572.5|creatine kinase, mitochondrial 1A
hg19_v2_chr2_-_121223697_121223697	0.102776	OTX2_CRX	ENST00000593290.1|FLJ14816|ENSG00000268194.1|long intergenic non-protein coding RNA 1101
hg19_v2_chr2_-_14541060_14541087	0.101745	OTX2_CRX	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr5_-_149324306_149324362	0.100872	OTX2_CRX	ENST00000255266.5|PDE6A|ENSG00000132915.6|phosphodiesterase 6A, cGMP-specific, rod, alpha
hg19_v2_chr9_-_95244781_95244796	0.100117	OTX2_CRX	ENST00000375544.3|ASPN|ENSG00000106819.7|asporin 	ENST00000375543.1|ASPN|ENSG00000106819.7|asporin 	ENST00000395538.3|ASPN|ENSG00000106819.7|asporin 	ENST00000450139.2|ASPN|ENSG00000106819.7|asporin
hg19_v2_chr1_-_53608249_53608288	0.0998893	OTX2_CRX	ENST00000371494.4|SLC1A7|ENSG00000162383.7|solute carrier family 1 (glutamate transporter), member 7
hg19_v2_chr6_-_35480640_35480653	0.0998341	OTX2_CRX	ENST00000428978.1|TULP1|ENSG00000112041.8|tubby like protein 1 	ENST00000322263.4|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr19_+_2476116_2476146	0.0990465	OTX2_CRX	ENST00000215631.4|GADD45B|ENSG00000099860.4|growth arrest and DNA-damage-inducible, beta 	ENST00000587345.1|GADD45B|ENSG00000099860.4|growth arrest and DNA-damage-inducible, beta
hg19_v2_chrX_+_123095860_123095888	0.0983056	OTX2_CRX	ENST00000428941.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr10_-_62761188_62761212	0.0978622	OTX2_CRX	ENST00000357917.4|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr19_-_44124019_44124030	0.0967595	OTX2_CRX	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr9_-_127358087_127358170	0.0955988	OTX2_CRX	ENST00000475178.1|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chrM_+_9207_9255	0.0951988	OTX2_CRX	ENST00000362079.2|MT-CO3|ENSG00000198938.2|mitochondrially encoded cytochrome c oxidase III
hg19_v2_chr9_+_17135016_17135063	0.0949515	OTX2_CRX	ENST00000425824.1|CNTLN|ENSG00000044459.10|centlein, centrosomal protein 	ENST00000262360.5|CNTLN|ENSG00000044459.10|centlein, centrosomal protein 	ENST00000380641.4|CNTLN|ENSG00000044459.10|centlein, centrosomal protein
hg19_v2_chr11_+_72975524_72975557	0.0931985	OTX2_CRX	ENST00000540342.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6 	ENST00000542092.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr14_-_57197224_57197273	0.0924182	OTX2_CRX	ENST00000554597.1|RP11-1085N6.3|ENSG00000259133.1|Uncharacterized protein  	ENST00000556696.1|RP11-1085N6.3|ENSG00000259133.1|Uncharacterized protein
hg19_v2_chr4_-_102268628_102268693	0.0916827	OTX2_CRX	ENST00000323055.6|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000512215.1|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000394854.3|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr3_-_9291063_9291136	0.0911486	OTX2_CRX	ENST00000383836.3|SRGAP3|ENSG00000196220.11|SLIT-ROBO Rho GTPase activating protein 3
hg19_v2_chr4_+_110769258_110769358	0.0905153	OTX2_CRX	ENST00000594814.1|LRIT3|ENSG00000183423.7|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
hg19_v2_chr7_+_28452130_28452154	0.089256	OTX2_CRX	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chrX_+_123095890_123095944	0.0887068	OTX2_CRX	ENST00000435215.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr19_-_3479086_3479118	0.0870594	OTX2_CRX	ENST00000587847.1|C19orf77|ENSG00000095932.5|chromosome 19 open reading frame 77
hg19_v2_chrM_+_8527_8546	0.0860194	OTX2_CRX	ENST00000361899.2|MT-ATP6|ENSG00000198899.2|mitochondrially encoded ATP synthase 6
hg19_v2_chr1_-_26633480_26633502	0.0855609	OTX2_CRX	ENST00000450041.1|UBXN11|ENSG00000158062.16|UBX domain protein 11
hg19_v2_chr13_+_31191920_31192005	0.0849482	OTX2_CRX	ENST00000255304.4|USPL1|ENSG00000132952.7|ubiquitin specific peptidase like 1
hg19_v2_chr9_+_17134980_17134994	0.0838776	OTX2_CRX	ENST00000380647.3|CNTLN|ENSG00000044459.10|centlein, centrosomal protein
hg19_v2_chr1_-_150208320_150208338	0.0836461	OTX2_CRX	ENST00000534220.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr11_-_111783595_111783651	0.0828208	OTX2_CRX	ENST00000528628.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr12_-_86650077_86650095	0.081488	OTX2_CRX	ENST00000552808.2|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENST00000547225.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr4_-_100485183_100485202	0.081388	OTX2_CRX	ENST00000394876.2|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae)
hg19_v2_chr15_+_58430368_58430401	0.0795326	OTX2_CRX	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr11_-_118436606_118436664	0.0791514	OTX2_CRX	ENST00000530872.1|IFT46|ENSG00000118096.3|intraflagellar transport 46 homolog (Chlamydomonas)
hg19_v2_chr2_+_66662249_66662267	0.0788788	OTX2_CRX	ENST00000560281.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr4_+_129730779_129730826	0.0773622	OTX2_CRX	ENST00000226319.6|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chr1_-_224033596_224033697	0.0768818	OTX2_CRX	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr11_+_111788738_111788757	0.0765363	OTX2_CRX	ENST00000529342.1|C11orf52|ENSG00000149300.5|chromosome 11 open reading frame 52
hg19_v2_chr6_+_100054606_100054606	0.076268	OTX2_CRX	ENST00000369215.4|PRDM13|ENSG00000112238.11|PR domain containing 13
hg19_v2_chr6_-_31697563_31697598	0.0747697	OTX2_CRX	ENST00000375789.2|DDAH2|ENSG00000213722.4|dimethylarginine dimethylaminohydrolase 2 	ENST00000416410.1|DDAH2|ENSG00000213722.4|dimethylarginine dimethylaminohydrolase 2
hg19_v2_chr3_+_111393501_111393538	0.0747662	OTX2_CRX	ENST00000393934.3|PLCXD2|ENSG00000240891.2|phosphatidylinositol-specific phospholipase C, X domain containing 2
hg19_v2_chr3_+_63953415_63953430	0.0742236	OTX2_CRX	ENST00000484332.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr11_-_36619771_36619793	0.0740217	OTX2_CRX	ENST00000311485.3|RAG2|ENSG00000175097.3|recombination activating gene 2 	ENST00000527033.1|RAG2|ENSG00000175097.3|recombination activating gene 2 	ENST00000532616.1|RAG2|ENSG00000175097.3|recombination activating gene 2
hg19_v2_chrX_-_6146876_6146924	0.0740195	OTX2_CRX	ENST00000381095.3|NLGN4X|ENSG00000146938.10|neuroligin 4, X-linked
hg19_v2_chr3_-_48229846_48229918	0.0719717	OTX2_CRX	ENST00000302506.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000351231.3|CDC25A|ENSG00000164045.7|cell division cycle 25A 	ENST00000437972.1|CDC25A|ENSG00000164045.7|cell division cycle 25A
hg19_v2_chr2_+_120770645_120770669	0.0717425	OTX2_CRX	ENST00000443902.2|EPB41L5|ENSG00000115109.9|erythrocyte membrane protein band 4.1 like 5
hg19_v2_chr1_-_151965048_151965062	0.0707383	OTX2_CRX	ENST00000368809.1|S100A10|ENSG00000197747.4|S100 calcium binding protein A10
hg19_v2_chr2_+_170366203_170366225	0.0705786	OTX2_CRX	ENST00000284669.1|KLHL41|ENSG00000239474.2|kelch-like family member 41
hg19_v2_chr10_-_48390973_48391010	0.0705135	OTX2_CRX	ENST00000224600.4|RBP3|ENSG00000107618.4|retinol binding protein 3, interstitial
hg19_v2_chr2_-_188312971_188312987	0.0699627	OTX2_CRX	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr18_-_21891460_21891506	0.0698586	OTX2_CRX	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chr12_-_110937351_110937445	0.069823	OTX2_CRX	ENST00000552130.2|VPS29|ENSG00000111237.14|vacuolar protein sorting 29 homolog (S. cerevisiae)
hg19_v2_chr5_-_95768973_95768987	0.0684477	OTX2_CRX	ENST00000311106.3|PCSK1|ENSG00000175426.6|proprotein convertase subtilisin/kexin type 1
hg19_v2_chr3_-_149388682_149388700	0.0683077	OTX2_CRX	ENST00000475579.1|WWTR1|ENSG00000018408.10|WW domain containing transcription regulator 1
hg19_v2_chr19_-_10121144_10121155	0.0679494	OTX2_CRX	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr17_-_46692287_46692317	0.0651564	OTX2_CRX	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr10_+_129785536_129785551	0.063885	OTX2_CRX	ENST00000419012.2|PTPRE|ENSG00000132334.12|protein tyrosine phosphatase, receptor type, E
hg19_v2_chr11_+_72975559_72975565	0.063232	OTX2_CRX	ENST00000349767.2|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr7_+_73868120_73868216	0.0615049	OTX2_CRX	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr5_-_36301984_36302010	0.0607663	OTX2_CRX	ENST00000502994.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000515759.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000296604.3|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like
hg19_v2_chr2_-_55237484_55237585	0.0602987	OTX2_CRX	ENST00000394609.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr21_+_17443521_17443553	0.0599756	OTX2_CRX	ENST00000456342.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr19_+_40877583_40877699	0.059661	OTX2_CRX	ENST00000596470.1|PLD3|ENSG00000105223.14|phospholipase D family, member 3
hg19_v2_chr10_-_105845674_105845760	0.0596313	OTX2_CRX	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr6_-_31697255_31697308	0.059406	OTX2_CRX	ENST00000436437.1|DDAH2|ENSG00000213722.4|dimethylarginine dimethylaminohydrolase 2
hg19_v2_chr4_-_100485143_100485182	0.0586743	OTX2_CRX	ENST00000394877.3|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae)
hg19_v2_chr1_+_180897269_180897295	0.0583008	OTX2_CRX	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr8_+_42873548_42873567	0.0571144	OTX2_CRX	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chr10_-_74114714_74114988	0.0562928	OTX2_CRX	ENST00000338820.3|DNAJB12|ENSG00000148719.10|DnaJ (Hsp40) homolog, subfamily B, member 12 	ENST00000394903.2|DNAJB12|ENSG00000148719.10|DnaJ (Hsp40) homolog, subfamily B, member 12 	ENST00000444643.2|DNAJB12|ENSG00000148719.10|DnaJ (Hsp40) homolog, subfamily B, member 12
hg19_v2_chr19_+_11457175_11457224	0.0558414	OTX2_CRX	ENST00000458408.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000586451.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000588592.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159
hg19_v2_chr14_-_71107921_71108085	0.0551769	OTX2_CRX	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr14_-_22005197_22005261	0.0549078	OTX2_CRX	ENST00000541965.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr22_-_41258074_41258130	0.0546078	OTX2_CRX	ENST00000307221.4|DNAJB7|ENSG00000172404.4|DnaJ (Hsp40) homolog, subfamily B, member 7
hg19_v2_chr1_-_117664317_117664414	0.0543362	OTX2_CRX	ENST00000256649.4|TRIM45|ENSG00000134253.5|tripartite motif containing 45 	ENST00000369464.3|TRIM45|ENSG00000134253.5|tripartite motif containing 45 	ENST00000485032.1|TRIM45|ENSG00000134253.5|tripartite motif containing 45
hg19_v2_chr12_+_6949964_6950138	0.0532508	OTX2_CRX	ENST00000541978.1|GNB3|ENSG00000111664.6|guanine nucleotide binding protein (G protein), beta polypeptide 3 	ENST00000435982.2|GNB3|ENSG00000111664.6|guanine nucleotide binding protein (G protein), beta polypeptide 3
hg19_v2_chr17_-_43209862_43209896	0.052884	OTX2_CRX	ENST00000322765.5|PLCD3|ENSG00000161714.7|phospholipase C, delta 3
hg19_v2_chr18_-_35145593_35145614	0.0528489	OTX2_CRX	ENST00000334919.5|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000591282.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000588597.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4
hg19_v2_chr11_+_20044096_20044116	0.0528433	OTX2_CRX	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr14_-_22005343_22005364	0.0526262	OTX2_CRX	ENST00000327430.3|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr1_-_11751665_11751707	0.0525505	OTX2_CRX	ENST00000376667.3|MAD2L2|ENSG00000116670.10|MAD2 mitotic arrest deficient-like 2 (yeast) 	ENST00000235310.3|MAD2L2|ENSG00000116670.10|MAD2 mitotic arrest deficient-like 2 (yeast)
hg19_v2_chr5_+_50679506_50679506	0.05249	OTX2_CRX	ENST00000511384.1|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chrX_+_123097014_123097033	0.0520132	OTX2_CRX	ENST00000394478.1|STAG2|ENSG00000101972.14|stromal antigen 2
hg19_v2_chr1_-_241799232_241799232	0.051016	OTX2_CRX	ENST00000366553.1|CHML|ENSG00000203668.1|choroideremia-like (Rab escort protein 2)
hg19_v2_chr1_+_18957500_18957623	0.0505084	OTX2_CRX	ENST00000375375.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr11_-_118436707_118436791	0.0504831	OTX2_CRX	ENST00000264020.2|IFT46|ENSG00000118096.3|intraflagellar transport 46 homolog (Chlamydomonas) 	ENST00000264021.3|IFT46|ENSG00000118096.3|intraflagellar transport 46 homolog (Chlamydomonas)
hg19_v2_chr10_-_116418053_116418062	0.0503612	OTX2_CRX	ENST00000277895.5|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr10_+_95372289_95372345	0.0490582	OTX2_CRX	ENST00000371447.3|PDE6C|ENSG00000095464.9|phosphodiesterase 6C, cGMP-specific, cone, alpha prime
hg19_v2_chr6_+_31554826_31554894	0.0485002	OTX2_CRX	ENST00000376089.2|LST1|ENSG00000204482.6|leukocyte specific transcript 1 	ENST00000396112.2|LST1|ENSG00000204482.6|leukocyte specific transcript 1
hg19_v2_chr7_-_111424462_111424496	0.0477553	OTX2_CRX	ENST00000437129.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr10_+_95848824_95848852	0.0469141	OTX2_CRX	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr10_+_118349920_118349937	0.0463725	OTX2_CRX	ENST00000531984.1|PNLIPRP1|ENSG00000187021.10|pancreatic lipase-related protein 1
hg19_v2_chr8_+_104892639_104892652	0.046024	OTX2_CRX	ENST00000436393.2|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr14_-_36789865_36789886	0.0459941	OTX2_CRX	ENST00000416007.4|MBIP|ENSG00000151332.14|MAP3K12 binding inhibitory protein 1
hg19_v2_chr5_+_115358088_115358088	0.0457454	OTX2_CRX	ENST00000600981.3|CTD-2287O16.3|ENSG00000268714.3|CTD-2287O16.3
hg19_v2_chr1_+_171939240_171939292	0.0455112	OTX2_CRX	ENST00000523513.1|DNM3|ENSG00000197959.9|dynamin 3
hg19_v2_chr10_+_124895472_124895508	0.045151	OTX2_CRX	ENST00000357878.5|HMX3|ENSG00000188620.9|H6 family homeobox 3
hg19_v2_chr9_-_8857776_8857878	0.045042	OTX2_CRX	ENST00000481079.1|PTPRD|ENSG00000153707.11|protein tyrosine phosphatase, receptor type, D
hg19_v2_chr18_-_35145689_35145718	0.0441167	OTX2_CRX	ENST00000591287.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000601019.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000601392.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4
hg19_v2_chr17_-_39661849_39661871	0.0431232	OTX2_CRX	ENST00000246635.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000336861.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587544.1|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587435.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr10_-_105845536_105845581	0.042162	OTX2_CRX	ENST00000393211.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr19_+_18208603_18208614	0.0414472	OTX2_CRX	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr16_-_325910_325953	0.040514	OTX2_CRX	ENST00000359740.5|RGS11|ENSG00000076344.11|regulator of G-protein signaling 11 	ENST00000316163.5|RGS11|ENSG00000076344.11|regulator of G-protein signaling 11 	ENST00000431291.2|RGS11|ENSG00000076344.11|regulator of G-protein signaling 11 	ENST00000397770.3|RGS11|ENSG00000076344.11|regulator of G-protein signaling 11 	ENST00000397768.3|RGS11|ENSG00000076344.11|regulator of G-protein signaling 11
hg19_v2_chr12_-_21487829_21487856	0.0396213	OTX2_CRX	ENST00000445053.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000452078.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000458504.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000422327.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000421294.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2
hg19_v2_chr17_-_39661947_39661969	0.0383361	OTX2_CRX	ENST00000590425.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr21_+_17443434_17443515	0.0380507	OTX2_CRX	ENST00000400178.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr9_+_18474098_18474160	0.0380037	OTX2_CRX	ENST00000327883.7|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1 	ENST00000431052.2|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1 	ENST00000380570.4|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chr4_+_129731074_129731186	0.0377548	OTX2_CRX	ENST00000512960.1|PHF17|ENSG00000077684.11|jade family PHD finger 1 	ENST00000503785.1|PHF17|ENSG00000077684.11|jade family PHD finger 1 	ENST00000514740.1|PHF17|ENSG00000077684.11|jade family PHD finger 1
hg19_v2_chrY_+_16634483_16634632	0.0374132	OTX2_CRX	ENST00000382872.1|NLGN4Y|ENSG00000165246.8|neuroligin 4, Y-linked
hg19_v2_chr4_-_74088800_74088844	0.0369099	OTX2_CRX	ENST00000509867.2|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr4_-_153601136_153601317	0.0364489	OTX2_CRX	ENST00000504064.1|TMEM154|ENSG00000170006.7|transmembrane protein 154 	ENST00000304385.3|TMEM154|ENSG00000170006.7|transmembrane protein 154
hg19_v2_chr1_-_94586651_94586733	0.0357043	OTX2_CRX	ENST00000535735.1|ABCA4|ENSG00000198691.7|ATP-binding cassette, sub-family A (ABC1), member 4 	ENST00000370225.3|ABCA4|ENSG00000198691.7|ATP-binding cassette, sub-family A (ABC1), member 4
hg19_v2_chr5_-_77072085_77072139	0.034897	OTX2_CRX	ENST00000518338.2|TBCA|ENSG00000171530.9|tubulin folding cofactor A 	ENST00000520039.1|TBCA|ENSG00000171530.9|tubulin folding cofactor A 	ENST00000306388.6|TBCA|ENSG00000171530.9|tubulin folding cofactor A 	ENST00000520361.1|TBCA|ENSG00000171530.9|tubulin folding cofactor A
hg19_v2_chr1_+_17248418_17248445	0.0326864	OTX2_CRX	ENST00000375541.5|CROCC|ENSG00000058453.12|ciliary rootlet coiled-coil, rootletin
hg19_v2_chr21_+_34915337_34915397	0.0318772	OTX2_CRX	ENST00000290239.6|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000381692.2|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000300278.4|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000381679.4|SON|ENSG00000159140.13|SON DNA binding protein
hg19_v2_chr8_-_80993010_80993073	0.0309795	OTX2_CRX	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr10_+_129785574_129785608	0.0307688	OTX2_CRX	ENST00000430713.2|PTPRE|ENSG00000132334.12|protein tyrosine phosphatase, receptor type, E 	ENST00000471218.1|PTPRE|ENSG00000132334.12|protein tyrosine phosphatase, receptor type, E
hg19_v2_chr15_+_58430567_58430589	0.0305983	OTX2_CRX	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr1_-_13452656_13452656	0.0299243	OTX2_CRX	ENST00000376132.3|PRAMEF13|ENSG00000204495.3|PRAME family member 13
hg19_v2_chr14_+_88471468_88471500	0.029776	OTX2_CRX	ENST00000267549.3|GPR65|ENSG00000140030.4|G protein-coupled receptor 65
hg19_v2_chr15_-_52483566_52483575	0.0292391	OTX2_CRX	ENST00000261837.7|GNB5|ENSG00000069966.14|guanine nucleotide binding protein (G protein), beta 5
hg19_v2_chr15_+_63050785_63050810	0.0288802	OTX2_CRX	ENST00000472902.1|TLN2|ENSG00000171914.10|talin 2
hg19_v2_chr6_-_30658745_30658786	0.0274155	OTX2_CRX	ENST00000376420.5|NRM|ENSG00000137404.10|nurim (nuclear envelope membrane protein) 	ENST00000376421.5|NRM|ENSG00000137404.10|nurim (nuclear envelope membrane protein)
hg19_v2_chr3_+_49058444_49058618	0.0271084	OTX2_CRX	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chrX_+_100646190_100646266	0.0267731	OTX2_CRX	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr8_+_65492756_65492814	0.0266605	OTX2_CRX	ENST00000321870.1|BHLHE22|ENSG00000180828.1|basic helix-loop-helix family, member e22
hg19_v2_chr6_+_155537771_155537868	0.0261024	OTX2_CRX	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr1_+_66999268_66999313	0.0250783	OTX2_CRX	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr20_+_4702548_4702565	0.0246116	OTX2_CRX	ENST00000305817.2|PRND|ENSG00000171864.4|prion protein 2 (dublet)
hg19_v2_chr22_-_43398442_43398488	0.024464	OTX2_CRX	ENST00000422336.1|PACSIN2|ENSG00000100266.13|protein kinase C and casein kinase substrate in neurons 2
hg19_v2_chr6_-_88411911_88411928	0.0242261	OTX2_CRX	ENST00000257787.5|AKIRIN2|ENSG00000135334.8|akirin 2
hg19_v2_chr10_-_99030395_99030434	0.0229407	OTX2_CRX	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr2_+_66662690_66662711	0.0228026	OTX2_CRX	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr2_-_70780572_70780622	0.0204365	OTX2_CRX	ENST00000450929.1|TGFA|ENSG00000163235.11|transforming growth factor, alpha
hg19_v2_chr9_+_18474204_18474231	0.0203174	OTX2_CRX	ENST00000276935.6|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chrX_+_69509927_69509970	0.0199705	OTX2_CRX	ENST00000374403.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr5_-_33984741_33984780	0.0192537	OTX2_CRX	ENST00000382102.3|SLC45A2|ENSG00000164175.10|solute carrier family 45, member 2 	ENST00000509381.1|SLC45A2|ENSG00000164175.10|solute carrier family 45, member 2 	ENST00000342059.3|SLC45A2|ENSG00000164175.10|solute carrier family 45, member 2 	ENST00000345083.5|SLC45A2|ENSG00000164175.10|solute carrier family 45, member 2
hg19_v2_chr16_+_8715536_8715572	0.0184137	OTX2_CRX	ENST00000563958.1|METTL22|ENSG00000067365.10|methyltransferase like 22 	ENST00000381920.3|METTL22|ENSG00000067365.10|methyltransferase like 22 	ENST00000564554.1|METTL22|ENSG00000067365.10|methyltransferase like 22
hg19_v2_chr9_+_18474163_18474202	0.0183182	OTX2_CRX	ENST00000380566.4|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chr19_-_42931567_42931581	0.0180074	OTX2_CRX	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr20_-_34330129_34330234	0.0179739	OTX2_CRX	ENST00000397370.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000528062.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000407261.4|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000374038.3|RBM39|ENSG00000131051.16|RNA binding motif protein 39 	ENST00000361162.6|RBM39|ENSG00000131051.16|RNA binding motif protein 39
hg19_v2_chr13_-_95131923_95131944	0.016967	OTX2_CRX	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr11_+_124735282_124735332	0.0168599	OTX2_CRX	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr18_-_35145728_35145817	0.0160444	OTX2_CRX	ENST00000361795.5|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000603232.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4
hg19_v2_chr1_+_244816237_244816357	0.0159952	OTX2_CRX	ENST00000302550.11|DESI2|ENSG00000121644.14|desumoylating isopeptidase 2
hg19_v2_chr8_+_92261516_92261555	0.0156676	OTX2_CRX	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr2_+_219472488_219472534	0.0147727	OTX2_CRX	ENST00000450993.2|PLCD4|ENSG00000115556.9|phospholipase C, delta 4
hg19_v2_chr12_-_67197760_67198052	0.0146419	OTX2_CRX	ENST00000539540.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000540433.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000541947.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538373.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr2_+_128175997_128176020	0.0142162	OTX2_CRX	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr20_-_49308048_49308084	0.0135305	OTX2_CRX	ENST00000327979.2|FAM65C|ENSG00000042062.7|family with sequence similarity 65, member C
hg19_v2_chr5_-_41794313_41794482	0.0128953	OTX2_CRX	ENST00000512084.1|OXCT1|ENSG00000083720.8|3-oxoacid CoA transferase 1
hg19_v2_chr12_-_14849470_14849540	0.0128762	OTX2_CRX	ENST00000261170.3|GUCY2C|ENSG00000070019.3|guanylate cyclase 2C (heat stable enterotoxin receptor)
hg19_v2_chr17_-_36499693_36499844	0.0124184	OTX2_CRX	ENST00000342292.4|GPR179|ENSG00000188888.7|G protein-coupled receptor 179
hg19_v2_chr9_-_28670283_28670283	0.0122576	OTX2_CRX	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chr15_+_93443419_93443580	0.0122159	OTX2_CRX	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr15_-_35047166_35047204	0.0108258	OTX2_CRX	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr4_+_96012614_96012642	0.0102583	OTX2_CRX	ENST00000264568.4|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr1_-_53608289_53608315	0.0101168	OTX2_CRX	ENST00000371491.4|SLC1A7|ENSG00000162383.7|solute carrier family 1 (glutamate transporter), member 7
hg19_v2_chr3_-_49058479_49058491	0.0085296	OTX2_CRX	ENST00000440857.1|DALRD3|ENSG00000178149.12|DALR anticodon binding domain containing 3
hg19_v2_chr10_-_76868866_76868891	0.00843745	OTX2_CRX	ENST00000607487.1|DUSP13|ENSG00000079393.16|dual specificity phosphatase 13
hg19_v2_chr9_+_34992846_34992869	0.00792688	OTX2_CRX	ENST00000443266.1|DNAJB5|ENSG00000137094.10|DnaJ (Hsp40) homolog, subfamily B, member 5
hg19_v2_chr1_-_150208291_150208309	0.00786623	OTX2_CRX	ENST00000533654.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr15_-_34610962_34611039	0.00719697	OTX2_CRX	ENST00000290209.5|SLC12A6|ENSG00000140199.7|solute carrier family 12 (potassium/chloride transporter), member 6
hg19_v2_chr17_-_71640227_71640228	0.00682891	OTX2_CRX	ENST00000388726.3|SDK2|ENSG00000069188.12|sidekick cell adhesion molecule 2 	ENST00000392650.3|SDK2|ENSG00000069188.12|sidekick cell adhesion molecule 2
hg19_v2_chr11_-_71752100_71752192	0.00640891	OTX2_CRX	ENST00000542977.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chrX_+_17653413_17653413	0.0061879	OTX2_CRX	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr12_-_21556577_21556599	0.00594992	OTX2_CRX	ENST00000450590.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000453443.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2
hg19_v2_chr5_-_33984786_33984835	0.00524273	OTX2_CRX	ENST00000296589.4|SLC45A2|ENSG00000164175.10|solute carrier family 45, member 2
hg19_v2_chr19_+_50183032_50183150	0.00480759	OTX2_CRX	ENST00000527412.1|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chrX_+_69509870_69509908	0.00470131	OTX2_CRX	ENST00000374388.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr1_+_202431859_202431871	0.00464287	OTX2_CRX	ENST00000391959.3|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000367270.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr5_+_50678921_50678921	0.00449697	OTX2_CRX	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr19_+_46001697_46001865	0.00440704	OTX2_CRX	ENST00000451287.2|PPM1N|ENSG00000213889.6|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) 	ENST00000324688.4|PPM1N|ENSG00000213889.6|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
hg19_v2_chr18_+_616672_616681	0.00423487	OTX2_CRX	ENST00000338387.7|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr13_-_79980315_79980403	0.00288235	OTX2_CRX	ENST00000438737.2|RBM26|ENSG00000139746.11|RNA binding motif protein 26
hg19_v2_chr14_+_92789498_92789537	0.00258419	OTX2_CRX	ENST00000531433.1|SLC24A4|ENSG00000140090.13|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
hg19_v2_chr17_-_9808887_9808938	0.00208964	OTX2_CRX	ENST00000226193.5|RCVRN|ENSG00000109047.7|recoverin
hg19_v2_chr1_-_39395165_39395198	0.00201194	OTX2_CRX	ENST00000372985.3|RHBDL2|ENSG00000158315.6|rhomboid, veinlet-like 2 (Drosophila)
hg19_v2_chr19_+_39989580_39989608	0.00192803	OTX2_CRX	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr2_-_175711133_175711158	0.00145087	OTX2_CRX	ENST00000409597.1|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000413882.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr6_-_154568815_154568826	0.00134841	OTX2_CRX	ENST00000519344.1|IPCEF1|ENSG00000074706.9|interaction protein for cytohesin exchange factors 1
hg19_v2_chr12_-_16758304_16758322	0.00118546	OTX2_CRX	ENST00000320122.6|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr15_+_96904487_96904487	0.000683396	OTX2_CRX	ENST00000600790.1|AC087477.1|ENSG00000268484.1|Uncharacterized protein
hg19_v2_chr9_-_130966497_130966662	0.000290114	OTX2_CRX	ENST00000393608.1|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1 	ENST00000372948.3|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1
