hg19_v2_chr15_+_41245160_41245347	0.888942	MSX2	ENST00000444189.2|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli) 	ENST00000446533.3|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli)
hg19_v2_chr17_+_74261413_74261452	0.54409	MSX2	ENST00000587913.1|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr17_-_43045439_43045439	0.504784	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr1_-_228613026_228613065	0.410115	MSX2	ENST00000366696.1|HIST3H3|ENSG00000168148.3|histone cluster 3, H3
hg19_v2_chr7_+_100209979_100210053	0.357295	MSX2	ENST00000493970.1|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000379527.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr15_+_80351910_80351955	0.350037	MSX2	ENST00000261749.6|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000561060.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr17_+_74261277_74261292	0.343219	MSX2	ENST00000327490.6|UBALD2|ENSG00000185262.7|UBA-like domain containing 2
hg19_v2_chr19_+_4007644_4007699	0.338938	MSX2	ENST00000262971.2|PIAS4|ENSG00000105229.2|protein inhibitor of activated STAT, 4
hg19_v2_chr12_-_10022735_10022735	0.338913	MSX2	ENST00000228438.2|CLEC2B|ENSG00000110852.4|C-type lectin domain family 2, member B
hg19_v2_chr7_+_100210133_100210214	0.332407	MSX2	ENST00000393950.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000424091.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr7_+_130794846_130794873	0.327548	MSX2	ENST00000421797.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr7_+_100209725_100209824	0.321889	MSX2	ENST00000223054.4|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr18_+_39535239_39535383	0.318005	MSX2	ENST00000585528.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr12_+_52695617_52695649	0.312625	MSX2	ENST00000293525.5|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr22_+_46476192_46476222	0.292925	MSX2	ENST00000443490.1|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr7_-_100183742_100183781	0.276942	MSX2	ENST00000310300.6|LRCH4|ENSG00000077454.11|leucine-rich repeats and calponin homology (CH) domain containing 4
hg19_v2_chr20_+_54967663_54967740	0.269224	MSX2	ENST00000452950.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
hg19_v2_chr22_-_30960876_30960901	0.251597	MSX2	ENST00000401975.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000428682.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000423299.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr12_-_9102224_9102331	0.231786	MSX2	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr3_-_48672859_48672926	0.231074	MSX2	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chr3_+_113251143_113251263	0.212405	MSX2	ENST00000264852.4|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1 	ENST00000393830.3|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1
hg19_v2_chr14_-_95236551_95236576	0.201612	MSX2	ENST00000238558.3|GSC|ENSG00000133937.3|goosecoid homeobox
hg19_v2_chr11_+_17298543_17298588	0.196549	MSX2	ENST00000533926.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr7_+_130794878_130794899	0.191239	MSX2	ENST00000416992.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr4_-_171012844_171012850	0.187217	MSX2	ENST00000502392.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase
hg19_v2_chr20_+_54967409_54967501	0.181796	MSX2	ENST00000415828.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000217109.4|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000428552.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
hg19_v2_chr19_+_42817450_42817493	0.17718	MSX2	ENST00000301204.3|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr16_-_18923035_18923035	0.174705	MSX2	ENST00000563836.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr9_+_34646624_34646649	0.173951	MSX2	ENST00000450095.2|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase 	ENST00000556278.1|GALT|ENSG00000258728.1|Uncharacterized protein
hg19_v2_chr1_-_68698222_68698266	0.171662	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr6_-_167040731_167040745	0.169924	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_-_94050668_94050724	0.167669	MSX2	ENST00000539242.1|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr19_+_42817527_42817546	0.164788	MSX2	ENST00000598766.1|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr17_+_12569472_12569506	0.164454	MSX2	ENST00000343344.4|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr20_+_49126881_49126936	0.158723	MSX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr1_-_36916066_36916092	0.153579	MSX2	ENST00000315643.9|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr16_-_29934558_29934641	0.149384	MSX2	ENST00000568995.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13 	ENST00000566413.1|KCTD13|ENSG00000174943.5|potassium channel tetramerization domain containing 13
hg19_v2_chr1_-_68698197_68698214	0.148952	MSX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr19_+_46236509_46236509	0.14844	MSX2	ENST00000457052.2|AC074212.3|ENSG00000237452.2|Uncharacterized protein
hg19_v2_chrX_-_48931648_48931730	0.147464	MSX2	ENST00000376386.3|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2 	ENST00000376390.4|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2
hg19_v2_chr14_-_88200641_88200643	0.140926	MSX2	ENST00000556168.1|RP11-1152H15.1|ENSG00000258807.1|RP11-1152H15.1
hg19_v2_chr5_+_31532373_31532479	0.138127	MSX2	ENST00000325366.9|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000355907.3|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000507818.2|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22
hg19_v2_chr11_+_17298255_17298296	0.136979	MSX2	ENST00000531172.1|NUCB2|ENSG00000070081.11|nucleobindin 2 	ENST00000533738.2|NUCB2|ENSG00000070081.11|nucleobindin 2 	ENST00000323688.6|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr11_+_17298522_17298531	0.136017	MSX2	ENST00000529313.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr10_-_28571015_28571067	0.131182	MSX2	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr6_+_34204642_34204664	0.129921	MSX2	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr17_+_12569306_12569344	0.126647	MSX2	ENST00000425538.1|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr8_+_9413410_9413451	0.125721	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr1_-_47779762_47779827	0.124166	MSX2	ENST00000371877.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000360380.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000337817.5|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000447475.2|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus
hg19_v2_chr9_+_74729511_74729525	0.123663	MSX2	ENST00000545168.1|GDA|ENSG00000119125.12|guanine deaminase
hg19_v2_chr12_+_64798826_64798936	0.122584	MSX2	ENST00000540203.1|XPOT|ENSG00000184575.7|exportin, tRNA
hg19_v2_chr3_-_11685345_11685432	0.1218	MSX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chrX_+_70752945_70752973	0.117954	MSX2	ENST00000373701.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr8_+_92261516_92261555	0.117915	MSX2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr18_+_63273310_63273326	0.117863	MSX2	ENST00000579862.1|RP11-775G23.1|ENSG00000265217.1|RP11-775G23.1
hg19_v2_chr11_+_17298297_17298341	0.116956	MSX2	ENST00000529010.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr6_-_167040693_167040725	0.11042	MSX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr9_-_4666421_4666492	0.100777	MSX2	ENST00000381895.5|SPATA6L|ENSG00000106686.12|spermatogenesis associated 6-like
hg19_v2_chr1_-_8877692_8877732	0.0961592	MSX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr1_-_190446759_190446774	0.0913928	MSX2	ENST00000367462.3|BRINP3|ENSG00000162670.8|bone morphogenetic protein/retinoic acid inducible neural-specific 3
hg19_v2_chr12_+_54718904_54718936	0.0900928	MSX2	ENST00000262061.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549043.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552218.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000553231.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552362.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000455864.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000416254.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549116.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000551779.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr12_+_117099342_117099387	0.0900174	MSX2	ENST00000546835.1|RP11-497G19.1|ENSG00000257883.1|RP11-497G19.1
hg19_v2_chr3_+_129247479_129247493	0.0892303	MSX2	ENST00000296271.3|RHO|ENSG00000163914.4|rhodopsin
hg19_v2_chr2_-_200335983_200335994	0.0867261	MSX2	ENST00000457245.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr1_-_151431909_151431987	0.0816161	MSX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr18_+_39535152_39535232	0.0815511	MSX2	ENST00000262039.4|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000398870.3|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000586545.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr21_-_22175341_22175434	0.0787568	MSX2	ENST00000416768.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000452561.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000419299.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320 	ENST00000437238.1|LINC00320|ENSG00000224924.2|long intergenic non-protein coding RNA 320
hg19_v2_chrX_-_15332665_15332693	0.0780533	MSX2	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chr7_-_56174161_56174269	0.0762667	MSX2	ENST00000395422.3|CHCHD2|ENSG00000106153.12|coiled-coil-helix-coiled-coil-helix domain containing 2
hg19_v2_chr11_-_121986923_121986923	0.0761497	MSX2	ENST00000560104.1|BLID|ENSG00000259571.1|BH3-like motif containing, cell death inducer
hg19_v2_chr14_+_65381079_65381212	0.0757706	MSX2	ENST00000549115.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000607599.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000548752.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000359118.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000552002.2|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551947.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000551093.1|CHURC1|ENSG00000258289.3|churchill domain containing 1 	ENST00000542227.1|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000447296.2|FNTB|ENSG00000257365.3|farnesyltransferase, CAAX box, beta 	ENST00000549987.1|CHURC1-FNTB|ENSG00000125954.8|CHURC1-FNTB readthrough
hg19_v2_chr17_-_9929581_9929626	0.0747236	MSX2	ENST00000437099.2|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000396115.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr4_+_71587669_71587752	0.0740753	MSX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr1_+_44115814_44115849	0.0733089	MSX2	ENST00000372396.3|KDM4A|ENSG00000066135.8|lysine (K)-specific demethylase 4A
hg19_v2_chr7_+_134331550_134331593	0.072929	MSX2	ENST00000344924.3|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000418040.1|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000393132.2|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase
hg19_v2_chr14_+_32798462_32798539	0.0715695	MSX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr17_-_80250663_80250695	0.0706446	MSX2	ENST00000581489.1|RP13-516M14.4|ENSG00000265692.1|RP13-516M14.4
hg19_v2_chr1_+_11714914_11714976	0.068668	MSX2	ENST00000425796.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376770.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376768.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000251547.5|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376760.1|FBXO44|ENSG00000132879.9|F-box protein 44 	ENST00000376762.4|FBXO44|ENSG00000132879.9|F-box protein 44
hg19_v2_chr6_+_53948328_53948338	0.0644429	MSX2	ENST00000370876.2|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr1_-_151431674_151431691	0.0644398	MSX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr1_-_232651312_232651312	0.0643005	MSX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr20_-_50419055_50419066	0.0535343	MSX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr2_-_55646957_55647027	0.0529371	MSX2	ENST00000263630.8|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr13_-_103389159_103389159	0.0529016	MSX2	ENST00000322527.2|CCDC168|ENSG00000175820.2|coiled-coil domain containing 168
hg19_v2_chr11_+_33061543_33061585	0.0526401	MSX2	ENST00000432887.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000528898.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000531632.2|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1
hg19_v2_chr11_+_108535752_108535841	0.0518537	MSX2	ENST00000322536.3|DDX10|ENSG00000178105.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
hg19_v2_chr17_-_12920907_12920987	0.0516948	MSX2	ENST00000609757.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000581499.2|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000580504.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2
hg19_v2_chr10_-_56561022_56561051	0.0511903	MSX2	ENST00000373965.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000414778.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395438.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000409834.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395445.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395446.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395442.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395440.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395432.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000361849.3|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395433.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000320301.6|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395430.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000437009.1|PCDH15|ENSG00000150275.13|protocadherin-related 15
hg19_v2_chr7_-_99716914_99716936	0.0492117	MSX2	ENST00000431404.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr9_+_34646651_34646689	0.048216	MSX2	ENST00000378842.3|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase
hg19_v2_chr2_-_55647057_55647082	0.0476906	MSX2	ENST00000436346.1|CCDC88A|ENSG00000115355.11|coiled-coil domain containing 88A
hg19_v2_chr11_-_124981475_124981659	0.0473577	MSX2	ENST00000532156.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000532407.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000279968.4|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527766.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529583.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000524373.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527271.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000526175.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529609.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000533273.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000531909.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529530.1|TMEM218|ENSG00000150433.5|transmembrane protein 218
hg19_v2_chr20_+_30467600_30467641	0.0473446	MSX2	ENST00000375934.4|TTLL9|ENSG00000131044.12|tubulin tyrosine ligase-like family, member 9 	ENST00000375922.4|TTLL9|ENSG00000131044.12|tubulin tyrosine ligase-like family, member 9
hg19_v2_chr1_-_158173659_158173674	0.047257	MSX2	ENST00000415019.1|RP11-404O13.5|ENSG00000176320.2|RP11-404O13.5
hg19_v2_chr3_-_141747950_141748004	0.0470886	MSX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr1_+_175036966_175036994	0.0459134	MSX2	ENST00000239462.4|TNN|ENSG00000120332.11|tenascin N
hg19_v2_chr8_+_1993152_1993168	0.043087	MSX2	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr12_-_95397442_95397546	0.0426815	MSX2	ENST00000547157.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000547986.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000327772.2|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
hg19_v2_chr10_-_99205607_99205779	0.0421313	MSX2	ENST00000477692.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000485122.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370886.5|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370885.4|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370902.3|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370884.5|EXOSC1|ENSG00000171311.8|exosome component 1
hg19_v2_chr7_-_99716952_99717021	0.0413192	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr11_+_67250490_67250527	0.0405192	MSX2	ENST00000528641.2|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein 	ENST00000279146.3|AIP|ENSG00000110711.5|aryl hydrocarbon receptor interacting protein
hg19_v2_chr11_+_17298342_17298378	0.0388953	MSX2	ENST00000530964.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr11_+_101918153_101918198	0.0371905	MSX2	ENST00000434758.2|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000526781.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70 	ENST00000534360.1|C11orf70|ENSG00000137691.8|chromosome 11 open reading frame 70
hg19_v2_chr1_-_36915880_36916004	0.0347408	MSX2	ENST00000445843.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr7_-_2883928_2883993	0.0327077	MSX2	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr19_-_19249255_19249322	0.0324046	MSX2	ENST00000587583.2|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000450333.2|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000587096.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000162044.9|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000592369.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000587915.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A
hg19_v2_chr1_+_151735431_151735446	0.0319105	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr3_-_120003941_120004083	0.0316205	MSX2	ENST00000464295.1|GPR156|ENSG00000175697.6|G protein-coupled receptor 156
hg19_v2_chr7_-_2883650_2883775	0.0278275	MSX2	ENST00000544127.1|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr8_+_1993173_1993199	0.027382	MSX2	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr7_-_99716940_99716943	0.0254885	MSX2	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_-_21377383_21377395	0.0246531	MSX2	ENST00000374935.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr14_-_23504337_23504369	0.0240904	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr6_-_116833500_116833511	0.0234924	MSX2	ENST00000356128.4|TRAPPC3L|ENSG00000173626.5|trafficking protein particle complex 3-like
hg19_v2_chr5_+_140557371_140557371	0.02284	MSX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chrX_+_70752917_70752933	0.0225996	MSX2	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr22_+_17956618_17956637	0.0205325	MSX2	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr11_+_108535849_108535863	0.0187524	MSX2	ENST00000526794.1|DDX10|ENSG00000178105.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
hg19_v2_chr8_-_117886612_117886673	0.013147	MSX2	ENST00000520992.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr1_-_151762943_151763012	0.00849857	MSX2	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr5_-_31532238_31532303	0.00816504	MSX2	ENST00000507438.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr1_+_244515930_244515950	0.00672015	MSX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr1_+_202317815_202317854	0.00657314	MSX2	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr20_-_50418947_50418964	0.00527046	MSX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr7_-_99717463_99717483	0.00263804	MSX2	ENST00000437822.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr1_-_151431647_151431669	0.0019989	MSX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr17_-_46716647_46716665	0.000650175	MSX2	ENST00000608940.1|RP11-357H14.17|ENSG00000272763.1|RP11-357H14.17
hg19_v2_chrX_-_21676442_21676453	0.000622258	MSX2	ENST00000379499.2|KLHL34|ENSG00000185915.4|kelch-like family member 34
