hg19_v2_chr6_+_26020672_26020718	0.48045	MSX1	ENST00000357647.3|HIST1H3A|ENSG00000198366.5|histone cluster 1, H3a
hg19_v2_chr10_-_101380121_101380235	0.337755	MSX1	ENST00000370495.4|SLC25A28|ENSG00000155287.6|solute carrier family 25 (mitochondrial iron transporter), member 28
hg19_v2_chr5_-_119669160_119669197	0.322601	MSX1	ENST00000514240.1|CTC-552D5.1|ENSG00000251293.1|CTC-552D5.1
hg19_v2_chr2_-_158345341_158345449	0.287003	MSX1	ENST00000435117.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein
hg19_v2_chr5_+_121465207_121465216	0.286908	MSX1	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr22_-_32766972_32766996	0.256239	MSX1	ENST00000382084.4|RFPL3S|ENSG00000205853.6|RFPL3 antisense 	ENST00000382086.2|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr6_+_28249299_28249319	0.236798	MSX1	ENST00000405948.2|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr1_+_158985457_158985468	0.236201	MSX1	ENST00000567661.1|IFI16|ENSG00000163565.14|interferon, gamma-inducible protein 16 	ENST00000474473.1|IFI16|ENSG00000163565.14|interferon, gamma-inducible protein 16
hg19_v2_chr5_+_175490540_175490540	0.233644	MSX1	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr4_+_169013666_169013697	0.227303	MSX1	ENST00000359299.3|ANXA10|ENSG00000109511.6|annexin A10
hg19_v2_chr6_+_28249332_28249391	0.226916	MSX1	ENST00000259883.3|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chrX_+_1710484_1710537	0.225833	MSX1	ENST00000313871.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A 	ENST00000381261.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A
hg19_v2_chr14_-_73997901_73997916	0.210317	MSX1	ENST00000557603.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4 	ENST00000556455.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4
hg19_v2_chr22_+_51176624_51176663	0.192329	MSX1	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr16_+_28985542_28985642	0.186134	MSX1	ENST00000567771.1|SPNS1|ENSG00000169682.13|spinster homolog 1 (Drosophila) 	ENST00000568388.1|SPNS1|ENSG00000169682.13|spinster homolog 1 (Drosophila)
hg19_v2_chr21_+_33671264_33671283	0.17869	MSX1	ENST00000339944.4|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr20_+_56964169_56964182	0.168848	MSX1	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr6_+_147981838_147981873	0.166684	MSX1	ENST00000427015.1|RP11-307P5.1|ENSG00000227681.1|RP11-307P5.1	ENST00000432506.1|RP11-307P5.1|ENSG00000227681.1|RP11-307P5.1
hg19_v2_chr19_+_18303992_18304039	0.164562	MSX1	ENST00000599612.2|MPV17L2|ENSG00000254858.5|MPV17 mitochondrial membrane protein-like 2
hg19_v2_chr18_+_61637159_61637483	0.160542	MSX1	ENST00000397985.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000353706.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000542677.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000397988.3|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000448851.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8
hg19_v2_chr19_+_3762645_3762690	0.159377	MSX1	ENST00000330133.4|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr12_-_10541575_10541616	0.149449	MSX1	ENST00000540818.1|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr12_+_27623565_27623565	0.149109	MSX1	ENST00000535986.1|SMCO2|ENSG00000165935.5|single-pass membrane protein with coiled-coil domains 2
hg19_v2_chr14_+_52327350_52327371	0.14407	MSX1	ENST00000555472.1|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2 	ENST00000556766.1|GNG2|ENSG00000186469.4|guanine nucleotide binding protein (G protein), gamma 2
hg19_v2_chr22_-_32767017_32767063	0.141207	MSX1	ENST00000400234.1|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr6_-_32784687_32784839	0.141141	MSX1	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr21_+_33671160_33671172	0.136448	MSX1	ENST00000303645.5|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr11_+_60681346_60681431	0.134424	MSX1	ENST00000227525.3|TMEM109|ENSG00000110108.5|transmembrane protein 109
hg19_v2_chr19_+_3762703_3762719	0.133894	MSX1	ENST00000589174.1|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr15_-_99548775_99548792	0.132251	MSX1	ENST00000378919.6|PGPEP1L|ENSG00000183571.9|pyroglutamyl-peptidase I-like
hg19_v2_chr5_-_137475071_137475122	0.132186	MSX1	ENST00000265191.2|NME5|ENSG00000112981.3|NME/NM23 family member 5
hg19_v2_chr13_-_52733980_52734002	0.127937	MSX1	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr7_+_138818490_138818541	0.125041	MSX1	ENST00000430935.1|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000495038.1|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000474035.2|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000478836.2|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000464848.1|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26 	ENST00000343187.4|TTC26|ENSG00000105948.9|tetratricopeptide repeat domain 26
hg19_v2_chr3_-_47555167_47555251	0.124417	MSX1	ENST00000296149.4|ELP6|ENSG00000163832.11|elongator acetyltransferase complex subunit 6
hg19_v2_chr1_+_8021954_8022038	0.120438	MSX1	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr8_-_25281747_25281779	0.117792	MSX1	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr2_-_158345462_158345480	0.115903	MSX1	ENST00000439355.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein 	ENST00000540637.1|CYTIP|ENSG00000115165.5|cytohesin 1 interacting protein
hg19_v2_chr14_+_55595960_55595978	0.114391	MSX1	ENST00000554715.1|LGALS3|ENSG00000131981.11|lectin, galactoside-binding, soluble, 3
hg19_v2_chr1_+_74701062_74701099	0.112771	MSX1	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr5_-_147162078_147162106	0.112722	MSX1	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr11_-_128894053_128894123	0.109978	MSX1	ENST00000392657.3|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chr2_+_196313239_196313256	0.108959	MSX1	ENST00000413290.1|AC064834.1|ENSG00000224099.1|AC064834.1
hg19_v2_chr18_+_29598335_29598428	0.106913	MSX1	ENST00000217740.3|RNF125|ENSG00000101695.4|ring finger protein 125, E3 ubiquitin protein ligase
hg19_v2_chrX_+_23928500_23928500	0.105805	MSX1	ENST00000435707.1|CXorf58|ENSG00000165182.6|chromosome X open reading frame 58
hg19_v2_chr12_+_9066472_9066492	0.104665	MSX1	ENST00000538657.1|PHC1|ENSG00000111752.6|polyhomeotic homolog 1 (Drosophila)
hg19_v2_chr8_+_1993152_1993168	0.104174	MSX1	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr5_-_177207634_177207677	0.1033	MSX1	ENST00000513554.1|FAM153A|ENSG00000170074.15|family with sequence similarity 153, member A 	ENST00000440605.3|FAM153A|ENSG00000170074.15|family with sequence similarity 153, member A
hg19_v2_chr1_-_209792111_209792143	0.100608	MSX1	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr16_+_69345243_69345312	0.0962588	MSX1	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr8_+_30244580_30244749	0.096222	MSX1	ENST00000523115.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing 	ENST00000519647.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing
hg19_v2_chr5_+_121647386_121647464	0.0930927	MSX1	ENST00000542191.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000506272.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000508681.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000509154.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr11_-_56238014_56238014	0.0921402	MSX1	ENST00000312240.2|OR5M3|ENSG00000174937.2|olfactory receptor, family 5, subfamily M, member 3
hg19_v2_chr16_-_66584059_66584315	0.0916431	MSX1	ENST00000417693.3|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000544898.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000569718.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000527284.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000299697.7|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000451102.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr4_+_146539415_146539415	0.0904889	MSX1	ENST00000281317.5|MMAA|ENSG00000151611.9|methylmalonic aciduria (cobalamin deficiency) cblA type
hg19_v2_chr8_+_1993173_1993199	0.0874117	MSX1	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr20_+_5731083_5731100	0.0864518	MSX1	ENST00000445603.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000442185.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr13_-_45048386_45048415	0.0847583	MSX1	ENST00000472477.1|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr15_-_76304731_76304785	0.0846363	MSX1	ENST00000394907.3|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr10_+_97709725_97709725	0.0827103	MSX1	ENST00000472454.2|RP11-248J23.6|ENSG00000269948.1|Protein LOC100652732
hg19_v2_chr20_+_56964253_56964369	0.081452	MSX1	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr5_-_11588907_11588967	0.0800402	MSX1	ENST00000513598.1|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2 	ENST00000503622.1|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2
hg19_v2_chr17_-_47786375_47786400	0.0781105	MSX1	ENST00000511657.1|SLC35B1|ENSG00000121073.9|solute carrier family 35, member B1
hg19_v2_chr18_-_70532906_70532934	0.0780856	MSX1	ENST00000299430.2|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1 	ENST00000397929.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr9_+_44868935_44868935	0.0773684	MSX1	ENST00000448436.2|RP11-160N1.10|ENSG00000204814.5|RP11-160N1.10
hg19_v2_chr14_+_50291993_50291993	0.0766926	MSX1	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr1_+_76540386_76540445	0.0756471	MSX1	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr17_-_48785216_48785291	0.0737604	MSX1	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr1_-_19426149_19426221	0.0732691	MSX1	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr16_-_71518504_71518542	0.0718297	MSX1	ENST00000565100.2|ZNF19|ENSG00000157429.11|zinc finger protein 19
hg19_v2_chr12_-_52604607_52604639	0.071555	MSX1	ENST00000551894.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80 	ENST00000553017.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80
hg19_v2_chr6_-_32557610_32557630	0.0711758	MSX1	ENST00000360004.5|HLA-DRB1|ENSG00000196126.6|major histocompatibility complex, class II, DR beta 1
hg19_v2_chr8_+_28748765_28748833	0.0704096	MSX1	ENST00000355231.5|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr21_+_17792672_17792775	0.07004	MSX1	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr11_-_85376121_85376181	0.0697893	MSX1	ENST00000527447.1|CREBZF|ENSG00000137504.9|CREB/ATF bZIP transcription factor
hg19_v2_chr6_-_109777128_109777203	0.0691233	MSX1	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr3_-_21792838_21792927	0.0686855	MSX1	ENST00000281523.2|ZNF385D|ENSG00000151789.5|zinc finger protein 385D
hg19_v2_chr19_-_53757941_53758088	0.0683352	MSX1	ENST00000594517.1|ZNF677|ENSG00000197928.6|zinc finger protein 677 	ENST00000601413.1|ZNF677|ENSG00000197928.6|zinc finger protein 677 	ENST00000594681.1|ZNF677|ENSG00000197928.6|zinc finger protein 677
hg19_v2_chr6_-_109776901_109776994	0.068239	MSX1	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr15_+_79166065_79166163	0.0681341	MSX1	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr7_+_99425633_99425739	0.0662371	MSX1	ENST00000354829.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000421837.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000417625.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000342499.4|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000444905.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000415413.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000312017.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000222382.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43
hg19_v2_chr21_+_43619796_43619811	0.0651159	MSX1	ENST00000398457.2|ABCG1|ENSG00000160179.14|ATP-binding cassette, sub-family G (WHITE), member 1
hg19_v2_chr11_+_12132117_12132160	0.0638167	MSX1	ENST00000256194.4|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2
hg19_v2_chr4_-_120243545_120243562	0.0629914	MSX1	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr2_+_242498135_242498136	0.0624215	MSX1	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr2_+_168675182_168675182	0.0616269	MSX1	ENST00000305861.1|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr6_-_150212029_150212170	0.0615608	MSX1	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr21_+_39668478_39668496	0.061305	MSX1	ENST00000398927.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr7_+_107220899_107220915	0.0611173	MSX1	ENST00000379117.2|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29 	ENST00000473124.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr11_+_61197508_61197545	0.0609363	MSX1	ENST00000541135.1|RP11-286N22.8|ENSG00000256591.1|Uncharacterized protein  	ENST00000301761.2|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2
hg19_v2_chr1_-_35450897_35450954	0.0604871	MSX1	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr14_-_101295407_101295537	0.0590366	MSX1	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr5_+_150404904_150404928	0.0585673	MSX1	ENST00000521632.1|GPX3|ENSG00000211445.7|glutathione peroxidase 3 (plasma)
hg19_v2_chr5_-_138739739_138739793	0.0585553	MSX1	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr7_+_141408153_141408153	0.0568235	MSX1	ENST00000397541.2|WEE2|ENSG00000214102.3|WEE1 homolog 2 (S. pombe)
hg19_v2_chr19_-_39805976_39805976	0.0561735	MSX1	ENST00000248668.4|LRFN1|ENSG00000128011.4|leucine rich repeat and fibronectin type III domain containing 1
hg19_v2_chr3_-_180397256_180397301	0.0561454	MSX1	ENST00000442201.2|CCDC39|ENSG00000145075.7|coiled-coil domain containing 39
hg19_v2_chr16_-_66584015_66584035	0.0554079	MSX1	ENST00000545043.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr14_+_55595762_55595782	0.0544709	MSX1	ENST00000254301.9|LGALS3|ENSG00000131981.11|lectin, galactoside-binding, soluble, 3
hg19_v2_chr10_-_74283694_74283749	0.0540135	MSX1	ENST00000398763.4|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000418483.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000489666.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1
hg19_v2_chr9_-_23779367_23779378	0.0534963	MSX1	ENST00000440102.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr10_+_13141585_13141603	0.0534495	MSX1	ENST00000378764.2|OPTN|ENSG00000123240.12|optineurin
hg19_v2_chr18_-_3874247_3874262	0.0534257	MSX1	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr16_+_21689835_21689835	0.0505552	MSX1	ENST00000286149.4|OTOA|ENSG00000155719.12|otoancorin 	ENST00000388958.3|OTOA|ENSG00000155719.12|otoancorin
hg19_v2_chr1_+_44514040_44514064	0.0502016	MSX1	ENST00000431800.1|RP5-1198O20.4|ENSG00000230615.2|RP5-1198O20.4	ENST00000437643.1|RP5-1198O20.4|ENSG00000230615.2|RP5-1198O20.4
hg19_v2_chr8_+_117963190_117963224	0.0490274	MSX1	ENST00000427715.2|SLC30A8|ENSG00000164756.8|solute carrier family 30 (zinc transporter), member 8
hg19_v2_chr8_+_24241789_24241802	0.0486004	MSX1	ENST00000256412.4|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1 	ENST00000538205.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr9_-_128246769_128246780	0.0483421	MSX1	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr1_+_224370873_224370968	0.0472792	MSX1	ENST00000323699.4|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1 	ENST00000391877.3|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1
hg19_v2_chr5_+_140762268_140762467	0.0467501	MSX1	ENST00000518325.1|PCDHGA7|ENSG00000253537.1|protocadherin gamma subfamily A, 7
hg19_v2_chr17_-_42441204_42441243	0.0464893	MSX1	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr13_+_49551020_49551097	0.046461	MSX1	ENST00000541916.1|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr8_+_24241969_24241999	0.046068	MSX1	ENST00000522298.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr2_-_77749446_77749465	0.0450574	MSX1	ENST00000409911.1|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4
hg19_v2_chr2_-_77749336_77749350	0.0425895	MSX1	ENST00000409282.1|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4
hg19_v2_chr2_-_77749387_77749405	0.0410521	MSX1	ENST00000409884.1|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4
hg19_v2_chr17_-_30228678_30228784	0.0408853	MSX1	ENST00000261708.4|UTP6|ENSG00000108651.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr16_-_66583994_66584010	0.040479	MSX1	ENST00000564917.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr10_+_135204338_135204338	0.0394656	MSX1	ENST00000468317.2|RP11-108K14.8|ENSG00000254536.1|Mitochondrial GTPase 1
hg19_v2_chr2_-_77749474_77749518	0.0388518	MSX1	ENST00000409093.1|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4 	ENST00000409088.3|LRRTM4|ENSG00000176204.9|leucine rich repeat transmembrane neuronal 4
hg19_v2_chr9_+_79074068_79074150	0.0366702	MSX1	ENST00000444201.2|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2 	ENST00000376730.4|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2
hg19_v2_chr1_+_84630574_84630602	0.0363645	MSX1	ENST00000413538.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta 	ENST00000417530.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr2_-_31361543_31361592	0.0346324	MSX1	ENST00000349752.5|GALNT14|ENSG00000158089.10|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
hg19_v2_chr14_+_101295638_101295752	0.0340877	MSX1	ENST00000523671.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr1_-_109935819_109935979	0.0334838	MSX1	ENST00000538502.1|SORT1|ENSG00000134243.7|sortilin 1
hg19_v2_chr12_+_14561422_14561431	0.033002	MSX1	ENST00000541056.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr3_+_171561127_171561306	0.0327313	MSX1	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr8_-_99057742_99057818	0.0301819	MSX1	ENST00000521291.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000396070.2|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000523172.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000287038.3|RPL30|ENSG00000156482.6|ribosomal protein L30
hg19_v2_chr10_-_29923893_29923907	0.0283955	MSX1	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr13_+_103459704_103459704	0.0279185	MSX1	ENST00000602836.1|BIVM-ERCC5|ENSG00000270181.1|BIVM-ERCC5 readthrough
hg19_v2_chr12_+_105380073_105380122	0.0273253	MSX1	ENST00000552951.1|C12orf45|ENSG00000151131.5|chromosome 12 open reading frame 45 	ENST00000280749.5|C12orf45|ENSG00000151131.5|chromosome 12 open reading frame 45
hg19_v2_chr1_+_111415757_111415779	0.0272277	MSX1	ENST00000429072.2|CD53|ENSG00000143119.8|CD53 molecule 	ENST00000271324.5|CD53|ENSG00000143119.8|CD53 molecule
hg19_v2_chr5_+_140220769_140220907	0.0270124	MSX1	ENST00000531613.1|PCDHA8|ENSG00000204962.4|protocadherin alpha 8 	ENST00000378123.3|PCDHA8|ENSG00000204962.4|protocadherin alpha 8
hg19_v2_chr11_+_92085262_92085262	0.0268167	MSX1	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr15_+_51669444_51669479	0.0265056	MSX1	ENST00000396399.2|GLDN|ENSG00000186417.9|gliomedin
hg19_v2_chr20_+_34129770_34129879	0.0257676	MSX1	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr19_+_55043977_55044008	0.0251376	MSX1	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr6_-_31830655_31830683	0.0247903	MSX1	ENST00000375631.4|NEU1|ENSG00000204386.6|sialidase 1 (lysosomal sialidase)
hg19_v2_chr1_+_46805832_46805874	0.02312	MSX1	ENST00000474844.1|NSUN4|ENSG00000117481.6|NOP2/Sun domain family, member 4
hg19_v2_chr7_-_20256965_20257034	0.0231178	MSX1	ENST00000400331.5|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1 	ENST00000332878.4|MACC1|ENSG00000183742.8|metastasis associated in colon cancer 1
hg19_v2_chr15_-_42500351_42500523	0.0230629	MSX1	ENST00000348544.4|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae) 	ENST00000318006.5|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae)
hg19_v2_chr6_-_76072719_76072770	0.0221521	MSX1	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr20_+_5731027_5731055	0.0220276	MSX1	ENST00000378979.4|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000303142.6|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr18_-_3874271_3874337	0.0204018	MSX1	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr22_+_41697520_41697613	0.0193657	MSX1	ENST00000352645.4|ZC3H7B|ENSG00000100403.10|zinc finger CCCH-type containing 7B
hg19_v2_chr10_+_13142225_13142246	0.0176615	MSX1	ENST00000378747.3|OPTN|ENSG00000123240.12|optineurin
hg19_v2_chr7_+_23338819_23338973	0.0174642	MSX1	ENST00000466681.1|MALSU1|ENSG00000156928.4|mitochondrial assembly of ribosomal large subunit 1
hg19_v2_chr9_+_133539981_133539981	0.0172005	MSX1	ENST00000253008.2|PRDM12|ENSG00000130711.3|PR domain containing 12
hg19_v2_chr2_+_32502952_32503025	0.0156946	MSX1	ENST00000238831.4|YIPF4|ENSG00000119820.6|Yip1 domain family, member 4
hg19_v2_chr2_-_109605663_109605828	0.0152946	MSX1	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
hg19_v2_chr17_-_8113542_8113572	0.0146869	MSX1	ENST00000578549.1|AURKB|ENSG00000178999.8|aurora kinase B 	ENST00000535053.1|AURKB|ENSG00000178999.8|aurora kinase B 	ENST00000582368.1|AURKB|ENSG00000178999.8|aurora kinase B
hg19_v2_chr8_-_121824374_121824391	0.0133886	MSX1	ENST00000517992.1|SNTB1|ENSG00000172164.9|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
hg19_v2_chr14_+_101293687_101293748	0.0127818	MSX1	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr9_+_115913222_115913266	0.0125411	MSX1	ENST00000259392.3|SLC31A2|ENSG00000136867.6|solute carrier family 31 (copper transporter), member 2
hg19_v2_chr14_+_31046959_31046972	0.0108578	MSX1	ENST00000547532.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase 	ENST00000555429.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase
hg19_v2_chr12_+_122688090_122688284	0.0108368	MSX1	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr11_+_61197572_61197620	0.0105103	MSX1	ENST00000542074.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000534878.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000537782.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000543265.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2
hg19_v2_chr1_-_20503917_20503917	0.00748651	MSX1	ENST00000429261.2|PLA2G2C|ENSG00000187980.6|phospholipase A2, group IIC
hg19_v2_chr11_-_66964638_66964638	0.00635831	MSX1	ENST00000444002.2|AP001885.1|ENSG00000179038.7|AP001885.1
hg19_v2_chr2_+_7073174_7073194	0.00533601	MSX1	ENST00000416587.1|RNF144A|ENSG00000151692.10|ring finger protein 144A
hg19_v2_chr14_+_68086515_68086595	0.00529111	MSX1	ENST00000261783.3|ARG2|ENSG00000081181.3|arginase 2
hg19_v2_chr16_-_66583701_66583783	0.00365936	MSX1	ENST00000527800.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000525974.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000563369.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr2_-_145278475_145278621	0.00357159	MSX1	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr10_+_32873190_32873190	0.00346318	MSX1	ENST00000375025.4|C10orf68|ENSG00000150076.18|Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant 5, mRNA.
hg19_v2_chr10_-_32667660_32667735	0.00321927	MSX1	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr12_+_106751436_106751539	0.00279969	MSX1	ENST00000228347.4|POLR3B|ENSG00000013503.5|polymerase (RNA) III (DNA directed) polypeptide B
hg19_v2_chr10_-_61899124_61899158	0.00267699	MSX1	ENST00000373815.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chrX_+_134654540_134654591	0.00261213	MSX1	ENST00000370752.4|DDX26B|ENSG00000165359.10|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
hg19_v2_chr3_+_114012819_114012833	0.00220463	MSX1	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr19_-_20150014_20150085	0.00207056	MSX1	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr7_+_2636522_2636546	0.000672712	MSX1	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr6_+_131958436_131958525	0.000276723	MSX1	ENST00000357639.3|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000543135.1|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000427148.2|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000358229.5|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3
