hg19_v2_chrX_-_11129229_11129273	0.164289	LHX2	ENST00000608176.1|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1	ENST00000433747.2|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1	ENST00000608576.1|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1	ENST00000608916.1|RP11-120D5.1|ENSG00000234129.3|RP11-120D5.1
hg19_v2_chr15_-_42565023_42565070	0.156316	LHX2	ENST00000566474.1|TMEM87A|ENSG00000103978.11|transmembrane protein 87A
hg19_v2_chr2_-_55237484_55237585	0.140201	LHX2	ENST00000394609.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr14_+_56078695_56078784	0.135896	LHX2	ENST00000416613.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr12_-_25348007_25348101	0.133343	LHX2	ENST00000354189.5|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1 	ENST00000545133.1|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1 	ENST00000554347.1|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1 	ENST00000395987.3|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1 	ENST00000320267.9|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1 	ENST00000395990.2|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1 	ENST00000537577.1|CASC1|ENSG00000118307.14|cancer susceptibility candidate 1
hg19_v2_chr9_-_77643307_77643366	0.127166	LHX2	ENST00000376834.3|C9orf41|ENSG00000156017.8|chromosome 9 open reading frame 41 	ENST00000376830.3|C9orf41|ENSG00000156017.8|chromosome 9 open reading frame 41
hg19_v2_chrX_+_18725758_18725784	0.116855	LHX2	ENST00000472826.1|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1 	ENST00000544635.1|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1 	ENST00000496075.2|PPEF1|ENSG00000086717.14|protein phosphatase, EF-hand calcium binding domain 1
hg19_v2_chr2_+_200472779_200472816	0.111498	LHX2	ENST00000427045.1|AC093590.1|ENSG00000238217.1|AC093590.1	ENST00000419243.1|AC093590.1|ENSG00000238217.1|AC093590.1
hg19_v2_chr8_-_109260897_109260994	0.110839	LHX2	ENST00000521297.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000519030.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000521440.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000518345.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000519627.1|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E 	ENST00000220849.5|EIF3E|ENSG00000104408.5|eukaryotic translation initiation factor 3, subunit E
hg19_v2_chr4_-_105416039_105416065	0.106601	LHX2	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chrY_+_15418467_15418467	0.104842	LHX2	ENST00000595988.1|AC010877.1|ENSG00000269291.1|Uncharacterized protein
hg19_v2_chr10_+_95326416_95326454	0.0996201	LHX2	ENST00000371481.4|FFAR4|ENSG00000186188.6|free fatty acid receptor 4 	ENST00000371483.4|FFAR4|ENSG00000186188.6|free fatty acid receptor 4 	ENST00000604414.1|FFAR4|ENSG00000186188.6|free fatty acid receptor 4
hg19_v2_chr12_+_94071129_94071175	0.097447	LHX2	ENST00000552983.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000332896.3|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000552033.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000548483.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr12_-_10978957_10978957	0.0969971	LHX2	ENST00000240619.2|TAS2R10|ENSG00000121318.2|taste receptor, type 2, member 10
hg19_v2_chr12_+_41136144_41136158	0.0946642	LHX2	ENST00000548005.1|CNTN1|ENSG00000018236.10|contactin 1 	ENST00000552248.1|CNTN1|ENSG00000018236.10|contactin 1
hg19_v2_chr2_-_55276320_55276334	0.0936351	LHX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr3_+_38017264_38017388	0.0853932	LHX2	ENST00000436654.1|CTDSPL|ENSG00000144677.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
hg19_v2_chr6_-_26043885_26043947	0.084912	LHX2	ENST00000357905.2|HIST1H2BB|ENSG00000196226.2|histone cluster 1, H2bb
hg19_v2_chr6_+_26199737_26199754	0.0835226	LHX2	ENST00000359985.1|HIST1H2BF|ENSG00000197846.3|histone cluster 1, H2bf
hg19_v2_chr21_-_27423339_27423352	0.0827852	LHX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr20_+_31870927_31870969	0.0816007	LHX2	ENST00000253354.1|BPIFB1|ENSG00000125999.6|BPI fold containing family B, member 1
hg19_v2_chr5_-_133702761_133702793	0.0806342	LHX2	ENST00000521118.1|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3 	ENST00000265334.4|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3 	ENST00000435211.1|CDKL3|ENSG00000006837.7|cyclin-dependent kinase-like 3
hg19_v2_chr7_+_37960163_37960291	0.0793564	LHX2	ENST00000199448.4|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000559325.1|EPDR1|ENSG00000086289.7|ependymin related 1 	ENST00000423717.1|EPDR1|ENSG00000086289.7|ependymin related 1
hg19_v2_chr4_-_57253587_57253670	0.0790459	LHX2	ENST00000513376.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000602986.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000434343.2|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000451613.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000205214.6|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase 	ENST00000502617.1|AASDH|ENSG00000157426.9|aminoadipate-semialdehyde dehydrogenase
hg19_v2_chr9_+_108320392_108320444	0.0759482	LHX2	ENST00000602661.1|FKTN|ENSG00000106692.9|fukutin 	ENST00000223528.2|FKTN|ENSG00000106692.9|fukutin 	ENST00000448551.2|FKTN|ENSG00000106692.9|fukutin 	ENST00000540160.1|FKTN|ENSG00000106692.9|fukutin
hg19_v2_chr17_-_57229155_57229198	0.0755594	LHX2	ENST00000584089.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr7_-_103848405_103848495	0.0751955	LHX2	ENST00000447452.2|ORC5|ENSG00000164815.6|origin recognition complex, subunit 5 	ENST00000545943.1|ORC5|ENSG00000164815.6|origin recognition complex, subunit 5 	ENST00000297431.4|ORC5|ENSG00000164815.6|origin recognition complex, subunit 5
hg19_v2_chr7_-_151217166_151217206	0.0736158	LHX2	ENST00000496004.1|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr5_-_150473127_150473157	0.0729119	LHX2	ENST00000521001.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr3_+_49977894_49977934	0.0713865	LHX2	ENST00000433811.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr1_-_232651312_232651312	0.0699854	LHX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr2_+_179318295_179318295	0.0698493	LHX2	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr15_-_72521017_72521045	0.0695079	LHX2	ENST00000561609.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr7_-_54826869_54826880	0.0625735	LHX2	ENST00000450622.1|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr12_-_118797475_118797527	0.0614987	LHX2	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr10_-_37891859_37891859	0.0597705	LHX2	ENST00000544824.1|MTRNR2L7|ENSG00000256892.1|MT-RNR2-like 7
hg19_v2_chr12_+_64173583_64173664	0.0597039	LHX2	ENST00000261234.6|TMEM5|ENSG00000118600.7|transmembrane protein 5
hg19_v2_chr16_+_53412368_53412387	0.0583051	LHX2	ENST00000565189.1|RP11-44F14.2|ENSG00000261804.1|RP11-44F14.2
hg19_v2_chr3_-_145940214_145940228	0.0557365	LHX2	ENST00000481701.1|PLSCR4|ENSG00000114698.10|phospholipid scramblase 4
hg19_v2_chr15_+_69854027_69854062	0.0553435	LHX2	ENST00000498938.2|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr16_-_66864806_66864900	0.054479	LHX2	ENST00000566336.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000394074.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000563185.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000359087.4|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000379463.2|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000565535.1|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1 	ENST00000290810.3|NAE1|ENSG00000159593.10|NEDD8 activating enzyme E1 subunit 1
hg19_v2_chr5_-_159546396_159546470	0.0534248	LHX2	ENST00000523662.1|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000456329.3|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000307063.7|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A
hg19_v2_chr6_-_26199471_26199494	0.0531689	LHX2	ENST00000341023.1|HIST1H2AD|ENSG00000196866.2|histone cluster 1, H2ad
hg19_v2_chr7_-_5998714_5998714	0.0529077	LHX2	ENST00000539903.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr3_-_129513259_129513392	0.0527692	LHX2	ENST00000329333.5|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr2_+_102953608_102953727	0.0523359	LHX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr7_-_54826920_54826939	0.051758	LHX2	ENST00000395535.3|SEC61G|ENSG00000132432.9|Sec61 gamma subunit 	ENST00000352861.4|SEC61G|ENSG00000132432.9|Sec61 gamma subunit
hg19_v2_chr2_-_55496174_55496334	0.0514991	LHX2	ENST00000417363.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000412530.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000394600.3|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000366137.2|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2 	ENST00000420637.1|MTIF2|ENSG00000085760.10|mitochondrial translational initiation factor 2
hg19_v2_chr21_-_35014027_35014066	0.0478458	LHX2	ENST00000399442.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000413017.2|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000445393.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000417979.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000426935.1|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000381540.3|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000361534.2|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1 	ENST00000381554.3|CRYZL1|ENSG00000205758.7|crystallin, zeta (quinone reductase)-like 1
hg19_v2_chr4_+_128554081_128554121	0.0475066	LHX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr17_-_62499334_62499553	0.046369	LHX2	ENST00000579996.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr8_+_22424551_22424585	0.043939	LHX2	ENST00000523348.1|SORBS3|ENSG00000120896.9|sorbin and SH3 domain containing 3
hg19_v2_chr7_-_65113280_65113280	0.0414773	LHX2	ENST00000593865.1|AC104057.1|ENSG00000269558.1|Protein LOC100996407
hg19_v2_chr8_-_82373809_82373815	0.0408598	LHX2	ENST00000379071.2|FABP9|ENSG00000205186.2|fatty acid binding protein 9, testis
hg19_v2_chr5_+_180682720_180682720	0.0396573	LHX2	ENST00000599439.1|AC008443.1|ENSG00000268397.1|CDNA: FLJ23158 fis, clone LNG09623; Uncharacterized protein
hg19_v2_chr10_-_90712520_90712536	0.0393844	LHX2	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr18_+_32556892_32557026	0.0390667	LHX2	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr4_+_15471489_15471637	0.0386711	LHX2	ENST00000424120.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000413206.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000438599.2|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000511544.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000512702.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000507954.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000515124.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000503292.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A 	ENST00000503658.1|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr2_-_10587897_10587926	0.0386252	LHX2	ENST00000405333.1|ODC1|ENSG00000115758.8|ornithine decarboxylase 1 	ENST00000443218.1|ODC1|ENSG00000115758.8|ornithine decarboxylase 1
hg19_v2_chr5_+_118668846_118668885	0.0384672	LHX2	ENST00000513374.1|TNFAIP8|ENSG00000145779.7|tumor necrosis factor, alpha-induced protein 8
hg19_v2_chr6_+_125524785_125524861	0.0383326	LHX2	ENST00000392482.2|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chrX_-_20074895_20074954	0.0381272	LHX2	ENST00000543767.1|MAP7D2|ENSG00000184368.11|MAP7 domain containing 2
hg19_v2_chr14_-_34420259_34420291	0.0376819	LHX2	ENST00000250457.3|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3 	ENST00000547327.2|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3
hg19_v2_chr17_-_39216344_39216368	0.0375142	LHX2	ENST00000391418.2|KRTAP2-3|ENSG00000212724.2|keratin associated protein 2-3
hg19_v2_chr2_+_179317994_179317994	0.0372699	LHX2	ENST00000375129.4|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr1_-_153518270_153518361	0.0368787	LHX2	ENST00000354332.4|S100A4|ENSG00000196154.7|S100 calcium binding protein A4 	ENST00000368716.4|S100A4|ENSG00000196154.7|S100 calcium binding protein A4
hg19_v2_chr8_+_76452097_76452126	0.0364036	LHX2	ENST00000396423.2|HNF4G|ENSG00000164749.7|hepatocyte nuclear factor 4, gamma
hg19_v2_chr12_-_118796910_118796943	0.0362333	LHX2	ENST00000541186.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000539872.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr11_-_62323702_62323738	0.0361807	LHX2	ENST00000530285.1|AHNAK|ENSG00000124942.9|AHNAK nucleoprotein
hg19_v2_chr7_+_99717230_99717321	0.0361487	LHX2	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr10_-_116286656_116286693	0.0357479	LHX2	ENST00000428430.1|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000369266.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000392952.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr12_+_122688090_122688284	0.0356614	LHX2	ENST00000324189.4|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 	ENST00000546192.1|B3GNT4|ENSG00000176383.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
hg19_v2_chr3_+_119187785_119187863	0.0353572	LHX2	ENST00000295588.4|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1 	ENST00000476573.1|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1
hg19_v2_chr2_+_74648848_74648894	0.0341402	LHX2	ENST00000409791.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000426787.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000348227.4|WDR54|ENSG00000005448.12|WD repeat domain 54
hg19_v2_chr14_-_51027838_51027851	0.0338081	LHX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr17_+_48823975_48824003	0.0335049	LHX2	ENST00000513969.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae) 	ENST00000503728.1|LUC7L3|ENSG00000108848.11|LUC7-like 3 (S. cerevisiae)
hg19_v2_chr12_-_49245916_49245932	0.0334592	LHX2	ENST00000552512.1|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 	ENST00000551468.1|DDX23|ENSG00000174243.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
hg19_v2_chr3_-_131221771_131221789	0.032896	LHX2	ENST00000510154.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000507669.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3
hg19_v2_chr5_+_68860949_68860949	0.0328175	LHX2	ENST00000507595.1|GTF2H2C|ENSG00000183474.11|general transcription factor IIH, polypeptide 2C
hg19_v2_chr21_+_34619079_34619079	0.0327887	LHX2	ENST00000433395.2|AP000295.9|ENSG00000249624.4|AP000295.9
hg19_v2_chr6_+_112408768_112408894	0.0313796	LHX2	ENST00000368656.2|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B 	ENST00000604268.1|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B
hg19_v2_chr6_+_105404899_105404931	0.0305846	LHX2	ENST00000345080.4|LIN28B|ENSG00000187772.6|lin-28 homolog B (C. elegans)
hg19_v2_chr1_+_219347203_219347233	0.030519	LHX2	ENST00000366927.3|LYPLAL1|ENSG00000143353.7|lysophospholipase-like 1
hg19_v2_chr6_-_76072719_76072770	0.0297092	LHX2	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr20_+_43029911_43029941	0.0283759	LHX2	ENST00000443598.2|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000316099.4|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha 	ENST00000415691.2|HNF4A|ENSG00000101076.12|hepatocyte nuclear factor 4, alpha
hg19_v2_chr16_+_23652700_23652713	0.0281787	LHX2	ENST00000300087.2|DCTN5|ENSG00000166847.5|dynactin 5 (p25)
hg19_v2_chr1_+_95616933_95616933	0.0276131	LHX2	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr1_-_168464875_168464884	0.0262991	LHX2	ENST00000422253.1|RP5-968D22.3|ENSG00000237658.1|RP5-968D22.3
hg19_v2_chr3_-_149095652_149095652	0.0258437	LHX2	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr3_+_62936098_62936146	0.0252037	LHX2	ENST00000475886.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465684.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465262.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000468072.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698
hg19_v2_chr16_-_23652570_23652663	0.0247515	LHX2	ENST00000261584.4|PALB2|ENSG00000083093.5|partner and localizer of BRCA2
hg19_v2_chr14_-_23395623_23395665	0.0239485	LHX2	ENST00000556043.1|PRMT5|ENSG00000100462.11|protein arginine methyltransferase 5
hg19_v2_chr13_+_24844979_24844994	0.023841	LHX2	ENST00000454083.1|SPATA13|ENSG00000182957.11|spermatogenesis associated 13
hg19_v2_chr6_-_131291572_131291623	0.0237178	LHX2	ENST00000529208.1|EPB41L2|ENSG00000079819.12|erythrocyte membrane protein band 4.1-like 2
hg19_v2_chr13_+_78315466_78315519	0.0234609	LHX2	ENST00000314070.5|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1 	ENST00000462234.1|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr6_+_30848557_30848645	0.0232154	LHX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr4_+_70894130_70894188	0.0230365	LHX2	ENST00000526767.1|HTN3|ENSG00000205649.3|histatin 3 	ENST00000530128.1|HTN3|ENSG00000205649.3|histatin 3 	ENST00000381057.3|HTN3|ENSG00000205649.3|histatin 3
hg19_v2_chr14_-_78083112_78083140	0.02194	LHX2	ENST00000216484.2|SPTLC2|ENSG00000100596.2|serine palmitoyltransferase, long chain base subunit 2
hg19_v2_chr16_+_88636875_88636886	0.021932	LHX2	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chrX_+_105937068_105937091	0.0218908	LHX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr8_-_19459993_19460011	0.0216798	LHX2	ENST00000454498.2|CSGALNACT1|ENSG00000147408.10|chondroitin sulfate N-acetylgalactosaminyltransferase 1 	ENST00000520003.1|CSGALNACT1|ENSG00000147408.10|chondroitin sulfate N-acetylgalactosaminyltransferase 1
hg19_v2_chr7_-_112758589_112758619	0.0216	LHX2	ENST00000413744.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998 	ENST00000439551.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998 	ENST00000441359.1|LINC00998|ENSG00000214194.4|long intergenic non-protein coding RNA 998
hg19_v2_chr10_-_61900762_61900779	0.0205648	LHX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr3_-_98619999_98620015	0.0201532	LHX2	ENST00000449482.1|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr4_-_109541539_109541585	0.0201107	LHX2	ENST00000509984.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000507248.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head) 	ENST00000506795.1|RPL34-AS1|ENSG00000234492.4|RPL34 antisense RNA 1 (head to head)
hg19_v2_chr1_+_160709055_160709074	0.0200129	LHX2	ENST00000368043.3|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000368042.3|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000458602.2|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000458104.2|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr2_-_175712270_175712316	0.0199244	LHX2	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr1_+_244515930_244515950	0.0198856	LHX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr13_+_73632897_73632930	0.0198619	LHX2	ENST00000377687.4|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr1_+_62439037_62439047	0.0194389	LHX2	ENST00000545929.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr11_+_113258495_113258513	0.0192577	LHX2	ENST00000303941.3|ANKK1|ENSG00000170209.4|ankyrin repeat and kinase domain containing 1
hg19_v2_chr21_+_35014706_35014767	0.0189236	LHX2	ENST00000399353.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000444491.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381318.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr9_+_21440440_21440440	0.0189211	LHX2	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr19_-_30199516_30199555	0.0183095	LHX2	ENST00000591243.1|C19orf12|ENSG00000131943.13|chromosome 19 open reading frame 12
hg19_v2_chr21_+_35014783_35014816	0.0182644	LHX2	ENST00000381291.4|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000381285.4|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399367.3|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399352.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399355.2|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein) 	ENST00000399349.1|ITSN1|ENSG00000205726.9|intersectin 1 (SH3 domain protein)
hg19_v2_chr6_-_26027480_26027522	0.0177914	LHX2	ENST00000377364.3|HIST1H4B|ENSG00000124529.3|histone cluster 1, H4b
hg19_v2_chrX_+_11129388_11129485	0.0170277	LHX2	ENST00000321143.4|HCCS|ENSG00000004961.10|holocytochrome c synthase 	ENST00000380763.3|HCCS|ENSG00000004961.10|holocytochrome c synthase 	ENST00000380762.4|HCCS|ENSG00000004961.10|holocytochrome c synthase
hg19_v2_chr6_+_123038689_123038707	0.0169946	LHX2	ENST00000354275.2|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta 	ENST00000368446.1|PKIB|ENSG00000135549.10|protein kinase (cAMP-dependent, catalytic) inhibitor beta
hg19_v2_chr6_+_3259148_3259294	0.0166427	LHX2	ENST00000419065.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000473000.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000451246.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4 	ENST00000454610.2|PSMG4|ENSG00000180822.7|proteasome (prosome, macropain) assembly chaperone 4
hg19_v2_chr4_-_153332886_153333030	0.0164088	LHX2	ENST00000603841.1|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr19_+_42212501_42212521	0.016324	LHX2	ENST00000398599.4|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5
hg19_v2_chr5_+_98109322_98109350	0.0157907	LHX2	ENST00000513185.1|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr14_-_68159152_68159200	0.0156835	LHX2	ENST00000554035.1|RDH11|ENSG00000072042.8|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
hg19_v2_chr16_+_4606347_4606491	0.0154056	LHX2	ENST00000444310.4|C16orf96|ENSG00000205832.7|chromosome 16 open reading frame 96
hg19_v2_chr2_+_12454437_12454450	0.0147626	LHX2	ENST00000412606.1|AC096559.1|ENSG00000224184.1|AC096559.1
hg19_v2_chr19_+_42212526_42212576	0.0142333	LHX2	ENST00000598976.1|CEA|ENSG00000267881.1|Uncharacterized protein  	ENST00000221992.6|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5 	ENST00000405816.1|CEACAM5|ENSG00000105388.10|carcinoembryonic antigen-related cell adhesion molecule 5 	ENST00000435837.2|CEA|ENSG00000267881.1|Uncharacterized protein
hg19_v2_chr10_-_69597828_69597854	0.0133529	LHX2	ENST00000339758.7|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr11_-_104972158_104972190	0.0125661	LHX2	ENST00000598974.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000593315.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000594519.1|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000415981.2|CASP1|ENSG00000137752.18|caspase 1, apoptosis-related cysteine peptidase 	ENST00000525374.1|CARD16|ENSG00000204397.3|caspase recruitment domain family, member 16 	ENST00000375707.1|CARD17|ENSG00000255221.2|caspase recruitment domain family, member 17
hg19_v2_chr13_+_19756173_19756185	0.0124702	LHX2	ENST00000382988.2|RP11-408E5.4|ENSG00000121388.4|RP11-408E5.4
hg19_v2_chr16_+_333152_333180	0.0119771	LHX2	ENST00000219406.6|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2 	ENST00000404312.1|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2 	ENST00000456379.1|PDIA2|ENSG00000185615.11|protein disulfide isomerase family A, member 2
hg19_v2_chr9_-_98268883_98268947	0.0115803	LHX2	ENST00000551630.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000548420.1|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr12_+_27932803_27932953	0.0106748	LHX2	ENST00000381271.2|KLHL42|ENSG00000087448.5|kelch-like family member 42
hg19_v2_chr2_+_120436733_120436759	0.0100417	LHX2	ENST00000401466.1|TMEM177|ENSG00000144120.8|transmembrane protein 177 	ENST00000424086.1|TMEM177|ENSG00000144120.8|transmembrane protein 177 	ENST00000272521.6|TMEM177|ENSG00000144120.8|transmembrane protein 177
hg19_v2_chr3_+_73110810_73110810	0.00971449	LHX2	ENST00000533473.1|EBLN2|ENSG00000255423.1|endogenous Bornavirus-like nucleoprotein 2
hg19_v2_chr4_+_147096837_147096912	0.0087738	LHX2	ENST00000296581.5|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000502781.1|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr3_-_160823040_160823151	0.0084343	LHX2	ENST00000484127.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000492353.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000473142.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000468268.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000460353.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000320474.4|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000392781.2|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
hg19_v2_chr17_+_17082842_17082884	0.00791509	LHX2	ENST00000579361.1|MPRIP|ENSG00000133030.15|myosin phosphatase Rho interacting protein
hg19_v2_chr18_+_3466248_3466312	0.00672474	LHX2	ENST00000581029.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000581442.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000579007.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4
hg19_v2_chr9_-_139137648_139137687	0.00636588	LHX2	ENST00000358701.5|QSOX2|ENSG00000165661.11|quiescin Q6 sulfhydryl oxidase 2
hg19_v2_chr9_-_125240235_125240235	0.00633503	LHX2	ENST00000259357.2|OR1J1|ENSG00000136834.2|olfactory receptor, family 1, subfamily J, member 1
hg19_v2_chr12_-_118796971_118796986	0.00529571	LHX2	ENST00000542902.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr2_+_68962014_68962095	0.00437891	LHX2	ENST00000467265.1|ARHGAP25|ENSG00000163219.7|Rho GTPase activating protein 25
hg19_v2_chr2_+_109204909_109204928	0.00435208	LHX2	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr1_+_84630574_84630602	0.00403003	LHX2	ENST00000413538.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta 	ENST00000417530.1|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr8_+_28748765_28748833	0.00396567	LHX2	ENST00000355231.5|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr20_+_57464200_57464215	0.00363548	LHX2	ENST00000604005.1|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr13_+_33160553_33160564	0.00336379	LHX2	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr11_+_24518723_24518757	0.00323891	LHX2	ENST00000336930.6|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000529015.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000533227.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2
hg19_v2_chr3_+_57882024_57882045	0.00312358	LHX2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr2_+_234627424_234627444	0.00288021	LHX2	ENST00000373409.3|UGT1A4|ENSG00000244474.1|UDP glucuronosyltransferase 1 family, polypeptide A4
hg19_v2_chr15_-_72563585_72563628	0.00275019	LHX2	ENST00000287196.9|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6 	ENST00000260376.7|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6
hg19_v2_chr16_+_31271274_31271315	0.00217147	LHX2	ENST00000287497.8|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit) 	ENST00000544665.3|ITGAM|ENSG00000169896.12|integrin, alpha M (complement component 3 receptor 3 subunit)
hg19_v2_chr5_+_137722255_137722269	0.0021187	LHX2	ENST00000542866.1|KDM3B|ENSG00000120733.9|lysine (K)-specific demethylase 3B
hg19_v2_chr4_+_153021899_153021970	0.00163083	LHX2	ENST00000509332.1|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1	ENST00000504144.1|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1	ENST00000499452.2|RP11-18H21.1|ENSG00000245954.2|RP11-18H21.1
hg19_v2_chr2_+_173686303_173686325	0.00152267	LHX2	ENST00000397087.3|RAPGEF4|ENSG00000091428.13|Rap guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr1_+_160709076_160709094	0.00146431	LHX2	ENST00000359331.4|SLAMF7|ENSG00000026751.12|SLAM family member 7 	ENST00000495334.1|SLAMF7|ENSG00000026751.12|SLAM family member 7
hg19_v2_chr11_-_31531121_31531192	0.00134516	LHX2	ENST00000532287.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000526776.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000534812.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000529749.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000278200.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000530023.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000533642.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr11_+_31391381_31391426	0.0012036	LHX2	ENST00000465995.1|DNAJC24|ENSG00000170946.10|DnaJ (Hsp40) homolog, subfamily C, member 24 	ENST00000536040.1|DNAJC24|ENSG00000170946.10|DnaJ (Hsp40) homolog, subfamily C, member 24
hg19_v2_chr14_+_100532771_100532783	0.00110771	LHX2	ENST00000557153.1|EVL|ENSG00000196405.8|Enah/Vasp-like
hg19_v2_chr3_-_131221790_131221835	0.00099457	LHX2	ENST00000512877.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000264995.3|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000511168.1|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3 	ENST00000425847.2|MRPL3|ENSG00000114686.4|mitochondrial ribosomal protein L3
hg19_v2_chr20_+_56964169_56964182	0.000976655	LHX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr4_-_89951028_89951062	0.000573238	LHX2	ENST00000506913.1|FAM13A|ENSG00000138640.10|family with sequence similarity 13, member A
hg19_v2_chr4_-_159956333_159956366	0.000482854	LHX2	ENST00000434826.2|C4orf45|ENSG00000164123.6|chromosome 4 open reading frame 45
hg19_v2_chr1_+_145883868_145883868	0.000145898	LHX2	ENST00000447947.2|GPR89C|ENSG00000196644.8|G protein-coupled receptor 89C
