hg19_v2_chr4_-_89442940_89442940	1.22951	HOXD4	ENST00000527353.1|PIGY|ENSG00000255072.1|phosphatidylinositol glycan anchor biosynthesis, class Y
hg19_v2_chr2_+_179318295_179318295	1.04883	HOXD4	ENST00000442710.1|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr17_-_64225508_64225539	0.952297	HOXD4	ENST00000205948.6|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr4_+_155484103_155484147	0.929508	HOXD4	ENST00000302068.4|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr4_+_155484155_155484178	0.871436	HOXD4	ENST00000509493.1|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr5_+_31193847_31193887	0.735089	HOXD4	ENST00000514738.1|CDH6|ENSG00000113361.8|cadherin 6, type 2, K-cadherin (fetal kidney) 	ENST00000265071.2|CDH6|ENSG00000113361.8|cadherin 6, type 2, K-cadherin (fetal kidney)
hg19_v2_chr3_+_142342228_142342236	0.598301	HOXD4	ENST00000337777.3|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr3_-_195310802_195310818	0.573958	HOXD4	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr13_-_54706954_54707048	0.416974	HOXD4	ENST00000606706.1|LINC00458|ENSG00000234787.3|long intergenic non-protein coding RNA 458 	ENST00000607494.1|LINC00458|ENSG00000234787.3|long intergenic non-protein coding RNA 458 	ENST00000427299.2|LINC00458|ENSG00000234787.3|long intergenic non-protein coding RNA 458 	ENST00000423442.2|LINC00458|ENSG00000234787.3|long intergenic non-protein coding RNA 458 	ENST00000451744.1|LINC00458|ENSG00000234787.3|long intergenic non-protein coding RNA 458
hg19_v2_chr13_+_37581115_37581115	0.398241	HOXD4	ENST00000481013.1|EXOSC8|ENSG00000120699.8|exosome component 8
hg19_v2_chr4_-_76944621_76944671	0.368832	HOXD4	ENST00000306602.1|CXCL10|ENSG00000169245.4|chemokine (C-X-C motif) ligand 10
hg19_v2_chr7_+_77428066_77428132	0.365695	HOXD4	ENST00000422959.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000307305.8|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000424760.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr9_+_97562440_97562463	0.328766	HOXD4	ENST00000395357.2|C9orf3|ENSG00000148120.10|chromosome 9 open reading frame 3
hg19_v2_chr7_+_16793160_16793160	0.326128	HOXD4	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr8_-_102803163_102803211	0.323195	HOXD4	ENST00000523645.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000520346.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000220931.6|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522448.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522951.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000522252.1|NCALD|ENSG00000104490.13|neurocalcin delta 	ENST00000519098.1|NCALD|ENSG00000104490.13|neurocalcin delta
hg19_v2_chr2_+_33701684_33701702	0.32188	HOXD4	ENST00000442390.1|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chrX_+_56590002_56590072	0.320131	HOXD4	ENST00000338222.5|UBQLN2|ENSG00000188021.7|ubiquilin 2
hg19_v2_chr5_+_68860949_68860949	0.319888	HOXD4	ENST00000507595.1|GTF2H2C|ENSG00000183474.11|general transcription factor IIH, polypeptide 2C
hg19_v2_chr5_+_111755280_111755280	0.318599	HOXD4	ENST00000600409.1|EPB41L4A-AS2|ENSG00000268358.1|EPB41L4A antisense RNA 2 (head to head)
hg19_v2_chr5_-_111754948_111755013	0.297215	HOXD4	ENST00000261486.5|EPB41L4A|ENSG00000129595.8|erythrocyte membrane protein band 4.1 like 4A
hg19_v2_chr6_+_130339710_130339745	0.296877	HOXD4	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr15_-_55700457_55700520	0.293806	HOXD4	ENST00000442196.3|CCPG1|ENSG00000260916.1|cell cycle progression 1 	ENST00000563171.1|CCPG1|ENSG00000260916.1|cell cycle progression 1 	ENST00000425574.3|CCPG1|ENSG00000260916.1|cell cycle progression 1
hg19_v2_chr13_+_110958124_110958159	0.273498	HOXD4	ENST00000400163.2|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chr16_-_3350614_3350614	0.272134	HOXD4	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr5_+_95066823_95066879	0.260352	HOXD4	ENST00000506817.1|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3 	ENST00000379982.3|RHOBTB3|ENSG00000164292.8|Rho-related BTB domain containing 3
hg19_v2_chr15_+_36887069_36887101	0.248639	HOXD4	ENST00000566807.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000567389.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41 	ENST00000562877.1|C15orf41|ENSG00000186073.7|chromosome 15 open reading frame 41
hg19_v2_chr2_+_179317994_179317994	0.239263	HOXD4	ENST00000375129.4|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr4_-_130014729_130014777	0.233874	HOXD4	ENST00000281142.5|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1 	ENST00000434680.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1
hg19_v2_chr1_+_186798073_186798147	0.23174	HOXD4	ENST00000367466.3|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent) 	ENST00000442353.2|PLA2G4A|ENSG00000116711.8|phospholipase A2, group IVA (cytosolic, calcium-dependent)
hg19_v2_chr7_-_104909435_104909535	0.229143	HOXD4	ENST00000357311.3|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr4_-_105416039_105416065	0.226027	HOXD4	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr2_+_190541153_190541177	0.222226	HOXD4	ENST00000313581.4|ANKAR|ENSG00000151687.10|ankyrin and armadillo repeat containing 	ENST00000438402.2|ANKAR|ENSG00000151687.10|ankyrin and armadillo repeat containing 	ENST00000431575.2|ANKAR|ENSG00000151687.10|ankyrin and armadillo repeat containing 	ENST00000281412.6|ANKAR|ENSG00000151687.10|ankyrin and armadillo repeat containing
hg19_v2_chr8_+_42873548_42873567	0.21871	HOXD4	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chr7_+_77428149_77428220	0.218246	HOXD4	ENST00000415251.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000275575.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr12_-_39734783_39734860	0.216846	HOXD4	ENST00000552961.1|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chr2_-_160473114_160473203	0.215412	HOXD4	ENST00000392783.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr8_-_27941380_27941403	0.208968	HOXD4	ENST00000413272.2|NUGGC|ENSG00000189233.7|nuclear GTPase, germinal center associated 	ENST00000341513.6|NUGGC|ENSG00000189233.7|nuclear GTPase, germinal center associated
hg19_v2_chr17_+_9479944_9479965	0.206426	HOXD4	ENST00000396219.3|WDR16|ENSG00000166596.10|WD repeat domain 16 	ENST00000352665.5|WDR16|ENSG00000166596.10|WD repeat domain 16
hg19_v2_chr4_+_169753156_169753192	0.205918	HOXD4	ENST00000393726.3|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000507735.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr9_+_130026756_130026871	0.205153	HOXD4	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr18_-_21891460_21891506	0.203205	HOXD4	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chrX_+_77166172_77166261	0.201243	HOXD4	ENST00000343533.5|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000350425.4|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000341514.6|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide
hg19_v2_chr3_-_149095652_149095652	0.197055	HOXD4	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr15_-_55700522_55700708	0.19036	HOXD4	ENST00000564092.1|CCPG1|ENSG00000260916.1|cell cycle progression 1 	ENST00000310958.6|CCPG1|ENSG00000260916.1|cell cycle progression 1
hg19_v2_chr7_+_135611542_135611542	0.189351	HOXD4	ENST00000416501.1|AC015987.2|ENSG00000236338.1|AC015987.2
hg19_v2_chr15_-_54025300_54025380	0.189165	HOXD4	ENST00000559418.1|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr12_-_94673956_94673956	0.186227	HOXD4	ENST00000551941.1|RP11-1105G2.3|ENSG00000258365.1|Uncharacterized protein
hg19_v2_chr4_+_169418195_169418217	0.182602	HOXD4	ENST00000261509.6|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000335742.7|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr20_-_45980621_45980649	0.180011	HOXD4	ENST00000446894.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr1_-_101360331_101360373	0.177099	HOXD4	ENST00000416479.1|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2 	ENST00000370113.3|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2
hg19_v2_chr2_-_225434538_225434545	0.171102	HOXD4	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr8_-_42396185_42396197	0.169348	HOXD4	ENST00000518717.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr15_+_93443419_93443580	0.168472	HOXD4	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr3_-_11623804_11623865	0.168064	HOXD4	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr1_-_101360374_101360419	0.16769	HOXD4	ENST00000535414.1|EXTL2|ENSG00000162694.9|exostosin-like glycosyltransferase 2
hg19_v2_chr2_+_158114051_158114110	0.160939	HOXD4	ENST00000259056.4|GALNT5|ENSG00000136542.4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
hg19_v2_chr13_+_20207782_20207841	0.158577	HOXD4	ENST00000414242.2|MPHOSPH8|ENSG00000196199.9|M-phase phosphoprotein 8 	ENST00000361479.5|MPHOSPH8|ENSG00000196199.9|M-phase phosphoprotein 8
hg19_v2_chr6_-_36515177_36515270	0.156037	HOXD4	ENST00000229812.7|STK38|ENSG00000112079.8|serine/threonine kinase 38
hg19_v2_chr5_-_54988448_54988545	0.152491	HOXD4	ENST00000503817.1|SLC38A9|ENSG00000177058.7|solute carrier family 38, member 9 	ENST00000512595.1|SLC38A9|ENSG00000177058.7|solute carrier family 38, member 9
hg19_v2_chr16_-_15736953_15737025	0.150014	HOXD4	ENST00000548025.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000551742.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000602337.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000344181.3|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000396368.3|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr2_+_170440844_170440897	0.149321	HOXD4	ENST00000260970.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000433207.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000409714.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000462903.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G)
hg19_v2_chr6_-_136847099_136847124	0.145591	HOXD4	ENST00000438100.2|MAP7|ENSG00000135525.14|microtubule-associated protein 7
hg19_v2_chr16_+_87636474_87636533	0.143348	HOXD4	ENST00000284262.2|JPH3|ENSG00000154118.8|junctophilin 3
hg19_v2_chr2_+_187371440_187371567	0.142102	HOXD4	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr4_+_124571409_124571447	0.136822	HOXD4	ENST00000514823.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000511919.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091 	ENST00000508111.1|RP11-93L9.1|ENSG00000249464.1|long intergenic non-protein coding RNA 1091
hg19_v2_chr14_+_61449076_61449109	0.134966	HOXD4	ENST00000526105.1|SLC38A6|ENSG00000139974.11|solute carrier family 38, member 6
hg19_v2_chr4_-_152149033_152149182	0.133886	HOXD4	ENST00000514152.1|SH3D19|ENSG00000109686.12|SH3 domain containing 19
hg19_v2_chr21_-_40984704_40984748	0.131652	HOXD4	ENST00000329618.6|C21orf88|ENSG00000184809.8|chromosome 21 open reading frame 88
hg19_v2_chr6_-_32157947_32157992	0.123374	HOXD4	ENST00000375050.4|PBX2|ENSG00000204304.7|pre-B-cell leukemia homeobox 2
hg19_v2_chr1_-_87379785_87379830	0.122001	HOXD4	ENST00000401030.3|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA. 	ENST00000370554.1|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA.
hg19_v2_chr1_-_87380002_87380098	0.121981	HOXD4	ENST00000331835.5|SEP15|ENSG00000183291.11|Homo sapiens 15 kDa selenoprotein (SEP15), transcript variant 2, mRNA.
hg19_v2_chr12_-_112279694_112279710	0.120124	HOXD4	ENST00000443596.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1 	ENST00000442119.1|MAPKAPK5-AS1|ENSG00000234608.3|MAPKAPK5 antisense RNA 1
hg19_v2_chr11_+_12766583_12766592	0.120112	HOXD4	ENST00000361985.2|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr13_+_73629107_73629148	0.117592	HOXD4	ENST00000539231.1|KLF5|ENSG00000102554.9|Kruppel-like factor 5 (intestinal)
hg19_v2_chr3_+_97483572_97483644	0.117424	HOXD4	ENST00000335979.2|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6 	ENST00000394206.1|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6
hg19_v2_chr17_+_59489112_59489112	0.117389	HOXD4	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chr17_-_29624343_29624429	0.115957	HOXD4	ENST00000247271.4|OMG|ENSG00000126861.4|oligodendrocyte myelin glycoprotein
hg19_v2_chr9_-_128246769_128246780	0.115083	HOXD4	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr10_-_14372870_14372944	0.113547	HOXD4	ENST00000357447.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chr20_+_18447771_18447771	0.11323	HOXD4	ENST00000377603.4|POLR3F|ENSG00000132664.7|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
hg19_v2_chr10_+_86184676_86184714	0.113014	HOXD4	ENST00000543283.1|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2
hg19_v2_chr22_-_29107919_29108032	0.108942	HOXD4	ENST00000434810.1|CHEK2|ENSG00000183765.16|checkpoint kinase 2 	ENST00000456369.1|CHEK2|ENSG00000183765.16|checkpoint kinase 2
hg19_v2_chr14_+_99947715_99947791	0.108572	HOXD4	ENST00000389879.5|CCNK|ENSG00000090061.13|cyclin K 	ENST00000557441.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555049.1|CCNK|ENSG00000090061.13|cyclin K 	ENST00000555842.1|CCNK|ENSG00000090061.13|cyclin K
hg19_v2_chr7_-_77427676_77427897	0.10755	HOXD4	ENST00000257663.3|TMEM60|ENSG00000135211.5|transmembrane protein 60
hg19_v2_chr15_-_65809991_65810037	0.0978309	HOXD4	ENST00000559526.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000358939.4|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000560665.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000321118.7|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000339244.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8 	ENST00000300141.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr10_+_95848824_95848852	0.0963502	HOXD4	ENST00000371385.3|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1 	ENST00000371375.1|PLCE1|ENSG00000138193.10|phospholipase C, epsilon 1
hg19_v2_chr11_-_31531121_31531192	0.0942982	HOXD4	ENST00000532287.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000526776.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000534812.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000529749.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000278200.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000530023.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 	ENST00000533642.1|IMMP1L|ENSG00000148950.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
hg19_v2_chr12_+_16109519_16109568	0.0904004	HOXD4	ENST00000526530.1|DERA|ENSG00000023697.8|deoxyribose-phosphate aldolase (putative)
hg19_v2_chr4_-_130014705_130014728	0.089068	HOXD4	ENST00000503401.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1
hg19_v2_chr1_+_203444887_203444975	0.0887884	HOXD4	ENST00000343110.2|PRELP|ENSG00000188783.5|proline/arginine-rich end leucine-rich repeat protein
hg19_v2_chrX_+_37850026_37850070	0.0882436	HOXD4	ENST00000341016.3|CXorf27|ENSG00000187516.5|chromosome X open reading frame 27
hg19_v2_chr4_-_130014532_130014590	0.0835398	HOXD4	ENST00000506368.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1 	ENST00000439369.2|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1 	ENST00000503215.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1
hg19_v2_chr14_+_90863327_90863356	0.0832137	HOXD4	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr2_-_99279928_99279942	0.0823669	HOXD4	ENST00000414521.2|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr3_-_4508925_4508965	0.0821901	HOXD4	ENST00000534863.1|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000383843.5|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000458465.2|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000405420.2|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1 	ENST00000272902.5|SUMF1|ENSG00000144455.9|sulfatase modifying factor 1
hg19_v2_chrX_+_70752917_70752933	0.0821479	HOXD4	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr19_+_30433110_30433214	0.0803652	HOXD4	ENST00000542441.2|URI1|ENSG00000105176.13|URI1, prefoldin-like chaperone 	ENST00000392271.1|URI1|ENSG00000105176.13|URI1, prefoldin-like chaperone
hg19_v2_chr6_-_53013620_53013644	0.0802076	HOXD4	ENST00000259803.7|GCM1|ENSG00000137270.10|glial cells missing homolog 1 (Drosophila)
hg19_v2_chr8_-_42698433_42698486	0.0797142	HOXD4	ENST00000345117.2|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1 	ENST00000254250.3|THAP1|ENSG00000131931.4|THAP domain containing, apoptosis associated protein 1
hg19_v2_chr5_-_179499108_179499147	0.0793895	HOXD4	ENST00000521389.1|RNF130|ENSG00000113269.9|ring finger protein 130
hg19_v2_chr18_+_32556892_32557026	0.0781584	HOXD4	ENST00000591734.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000413393.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000589180.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2 	ENST00000587359.1|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr16_+_84801852_84801877	0.0773826	HOXD4	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr14_+_62164340_62164443	0.0767477	HOXD4	ENST00000557538.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 	ENST00000539097.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
hg19_v2_chr19_+_50016610_50016658	0.0752542	HOXD4	ENST00000596975.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr11_-_102714534_102714534	0.0747001	HOXD4	ENST00000299855.5|MMP3|ENSG00000149968.7|matrix metallopeptidase 3 (stromelysin 1, progelatinase)
hg19_v2_chr8_+_107738343_107738413	0.0687792	HOXD4	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr3_-_178103144_178103205	0.0654034	HOXD4	ENST00000417383.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000418585.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000411727.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000439810.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1
hg19_v2_chr4_-_130014609_130014701	0.0651405	HOXD4	ENST00000511426.1|SCLT1|ENSG00000151466.7|sodium channel and clathrin linker 1
hg19_v2_chrX_+_37865804_37865842	0.0638374	HOXD4	ENST00000297875.2|SYTL5|ENSG00000147041.7|synaptotagmin-like 5 	ENST00000357972.5|SYTL5|ENSG00000147041.7|synaptotagmin-like 5
hg19_v2_chr5_+_141346385_141346437	0.0632205	HOXD4	ENST00000513019.1|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000356143.1|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr5_+_59783941_59784066	0.0620668	HOXD4	ENST00000506884.1|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding) 	ENST00000504876.2|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v2_chr1_+_201617450_201617465	0.060212	HOXD4	ENST00000295624.6|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367297.4|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367300.3|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr3_+_69812877_69812962	0.0585409	HOXD4	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr3_+_158787041_158787074	0.0571688	HOXD4	ENST00000471575.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000476809.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000485419.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr17_+_47448102_47448102	0.0557275	HOXD4	ENST00000576461.1|RP11-81K2.1|ENSG00000262039.1|Uncharacterized protein
hg19_v2_chr6_+_142468361_142468382	0.0521588	HOXD4	ENST00000367630.4|VTA1|ENSG00000009844.11|vesicle (multivesicular body) trafficking 1
hg19_v2_chr1_-_151762900_151762910	0.0499604	HOXD4	ENST00000440583.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr1_-_231560790_231560790	0.0496242	HOXD4	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr2_-_159237472_159237472	0.0477006	HOXD4	ENST00000409187.1|CCDC148|ENSG00000153237.13|coiled-coil domain containing 148
hg19_v2_chr2_-_27579842_27579907	0.0474271	HOXD4	ENST00000423998.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa 	ENST00000264720.3|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr2_-_31361543_31361592	0.0433895	HOXD4	ENST00000349752.5|GALNT14|ENSG00000158089.10|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
hg19_v2_chr10_+_13652047_13652047	0.0430133	HOXD4	ENST00000601460.1|RP11-295P9.3|ENSG00000239665.4|Uncharacterized protein
hg19_v2_chr5_-_179499086_179499105	0.0424272	HOXD4	ENST00000261947.4|RNF130|ENSG00000113269.9|ring finger protein 130
hg19_v2_chr7_+_112063192_112063237	0.0407838	HOXD4	ENST00000005558.4|IFRD1|ENSG00000006652.9|interferon-related developmental regulator 1
hg19_v2_chr21_+_35736302_35736323	0.0393003	HOXD4	ENST00000290310.3|KCNE2|ENSG00000159197.3|potassium voltage-gated channel, Isk-related family, member 2
hg19_v2_chr16_+_24549014_24549082	0.0390393	HOXD4	ENST00000564314.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6 	ENST00000567686.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr5_+_67586465_67586534	0.0387221	HOXD4	ENST00000336483.5|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr4_-_39979576_39979588	0.0376172	HOXD4	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr5_+_66300446_66300463	0.0359659	HOXD4	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr8_+_24151553_24151590	0.0353448	HOXD4	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr16_-_29910853_29910903	0.0351774	HOXD4	ENST00000308713.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr12_-_86650077_86650095	0.0334858	HOXD4	ENST00000552808.2|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENST00000547225.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr18_-_61311485_61311532	0.031216	HOXD4	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr13_+_51913819_51913838	0.0297271	HOXD4	ENST00000419898.2|SERPINE3|ENSG00000253309.2|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3
hg19_v2_chr4_-_143227088_143227105	0.0293418	HOXD4	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr7_-_22233442_22233527	0.028756	HOXD4	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr20_+_5931497_5931592	0.0286306	HOXD4	ENST00000378886.2|MCM8|ENSG00000125885.9|minichromosome maintenance complex component 8 	ENST00000265187.4|MCM8|ENSG00000125885.9|minichromosome maintenance complex component 8
hg19_v2_chr1_+_84630645_84630652	0.0280493	HOXD4	ENST00000394839.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr12_+_21168630_21168630	0.0273028	HOXD4	ENST00000421593.2|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr2_-_208030295_208030332	0.0259521	HOXD4	ENST00000458272.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr1_+_170115142_170115142	0.0257353	HOXD4	ENST00000439373.2|METTL11B|ENSG00000203740.3|methyltransferase like 11B
hg19_v2_chr20_+_32150140_32150230	0.0247037	HOXD4	ENST00000344201.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000346541.3|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397800.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000397798.2|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2 	ENST00000492345.1|CBFA2T2|ENSG00000078699.17|core-binding factor, runt domain, alpha subunit 2; translocated to, 2
hg19_v2_chr4_-_46996424_46996424	0.024315	HOXD4	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr1_+_144146808_144146812	0.0242602	HOXD4	ENST00000369190.5|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000412624.2|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8 	ENST00000369365.3|NBPF8|ENSG00000162825.12|neuroblastoma breakpoint family, member 8
hg19_v2_chr10_-_61899124_61899158	0.0239167	HOXD4	ENST00000373815.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr6_-_44281043_44281091	0.0236342	HOXD4	ENST00000244571.4|AARS2|ENSG00000124608.4|alanyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr17_+_39382900_39382907	0.0233175	HOXD4	ENST00000377721.3|KRTAP9-2|ENSG00000239886.2|keratin associated protein 9-2 	ENST00000455970.2|KRTAP9-2|ENSG00000239886.2|keratin associated protein 9-2
hg19_v2_chr2_+_234590556_234590584	0.0223901	HOXD4	ENST00000373426.3|UGT1A7|ENSG00000244122.2|UDP glucuronosyltransferase 1 family, polypeptide A7
hg19_v2_chr11_-_36310958_36310999	0.0220315	HOXD4	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr4_-_153601136_153601317	0.0217855	HOXD4	ENST00000504064.1|TMEM154|ENSG00000170006.7|transmembrane protein 154 	ENST00000304385.3|TMEM154|ENSG00000170006.7|transmembrane protein 154
hg19_v2_chr1_+_87380299_87380475	0.0215041	HOXD4	ENST00000370551.4|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1 	ENST00000370550.5|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1
hg19_v2_chr5_-_150727111_150727151	0.0193284	HOXD4	ENST00000335244.4|SLC36A2|ENSG00000186335.4|solute carrier family 36 (proton/amino acid symporter), member 2 	ENST00000521967.1|SLC36A2|ENSG00000186335.4|solute carrier family 36 (proton/amino acid symporter), member 2
hg19_v2_chr22_+_23248512_23248512	0.0186926	HOXD4	ENST00000390325.2|IGLC3|ENSG00000211679.2|immunoglobulin lambda constant 3 (Kern-Oz+ marker)
hg19_v2_chr15_-_64386120_64386217	0.0164901	HOXD4	ENST00000300030.3|FAM96A|ENSG00000166797.6|family with sequence similarity 96, member A
hg19_v2_chr18_-_74839891_74839921	0.0155779	HOXD4	ENST00000581878.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr2_+_224822121_224822190	0.0151651	HOXD4	ENST00000258383.3|MRPL44|ENSG00000135900.3|mitochondrial ribosomal protein L44
hg19_v2_chr5_-_110848189_110848240	0.0146329	HOXD4	ENST00000296632.3|STARD4|ENSG00000164211.8|StAR-related lipid transfer (START) domain containing 4 	ENST00000512160.1|STARD4|ENSG00000164211.8|StAR-related lipid transfer (START) domain containing 4 	ENST00000509887.1|STARD4|ENSG00000164211.8|StAR-related lipid transfer (START) domain containing 4
hg19_v2_chr18_+_22040593_22040616	0.0141778	HOXD4	ENST00000256906.4|HRH4|ENSG00000134489.6|histamine receptor H4
hg19_v2_chr5_+_66300464_66300505	0.0114299	HOXD4	ENST00000436277.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr11_+_112041253_112041253	0.010274	HOXD4	ENST00000532612.1|AP002884.3|ENSG00000272790.1|AP002884.3
hg19_v2_chr6_-_76072719_76072770	0.0100588	HOXD4	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr5_+_179921344_179921423	0.00967267	HOXD4	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr3_-_149293990_149294039	0.00962797	HOXD4	ENST00000472417.1|WWTR1|ENSG00000018408.10|WW domain containing transcription regulator 1
hg19_v2_chrX_+_139791917_139791938	0.00617338	HOXD4	ENST00000607004.1|LINC00632|ENSG00000203930.6|long intergenic non-protein coding RNA 632 	ENST00000370535.3|LINC00632|ENSG00000203930.6|long intergenic non-protein coding RNA 632
hg19_v2_chr14_-_24911868_24911902	0.00526122	HOXD4	ENST00000554698.1|SDR39U1|ENSG00000100445.12|short chain dehydrogenase/reductase family 39U, member 1
hg19_v2_chr11_-_77790865_77790934	0.0050271	HOXD4	ENST00000534029.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000525085.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000527806.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000528251.1|NDUFC2-KCTD14|ENSG00000259112.1|NDUFC2-KCTD14 readthrough 	ENST00000528164.1|NDUFC2|ENSG00000151366.8|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 	ENST00000530054.1|NDUFC2-KCTD14|ENSG00000259112.1|NDUFC2-KCTD14 readthrough
hg19_v2_chr5_+_157158205_157158205	0.00239539	HOXD4	ENST00000231198.7|THG1L|ENSG00000113272.9|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
hg19_v2_chr8_-_124279627_124279627	0.00238786	HOXD4	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr9_+_273038_273076	0.00147808	HOXD4	ENST00000487230.1|DOCK8|ENSG00000107099.11|dedicator of cytokinesis 8 	ENST00000469391.1|DOCK8|ENSG00000107099.11|dedicator of cytokinesis 8
hg19_v2_chr2_+_12246664_12246710	0.00140983	HOXD4	ENST00000449986.1|AC096559.1|ENSG00000224184.1|AC096559.1
hg19_v2_chr2_-_183291741_183291771	0.000251319	HOXD4	ENST00000351439.5|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent 	ENST00000409365.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
