hg19_v2_chr22_-_50970919_50971009	1.35711	GLI3	ENST00000329363.4|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000437588.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr22_-_50970566_50970644	1.13617	GLI3	ENST00000405135.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000401779.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr12_+_113354341_113354422	1.0632	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr18_+_21529811_21529857	1.01826	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr1_+_183155373_183155423	0.978176	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr17_+_41158742_41158822	0.918068	GLI3	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr1_+_28206150_28206242	0.895072	GLI3	ENST00000456990.1|THEMIS2|ENSG00000130775.11|thymocyte selection associated family member 2
hg19_v2_chr6_-_169563013_169563043	0.813239	GLI3	ENST00000439703.1|RP11-417E7.1|ENSG00000223485.1|RP11-417E7.1
hg19_v2_chr22_-_24622080_24622080	0.789766	GLI3	ENST00000425408.1|GGT5|ENSG00000099998.13|gamma-glutamyltransferase 5
hg19_v2_chr19_-_35981358_35981433	0.774288	GLI3	ENST00000484218.2|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein 	ENST00000338897.3|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein
hg19_v2_chr14_+_94577074_94577161	0.758312	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr8_-_57905812_57905919	0.733494	GLI3	ENST00000517461.1|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chr19_+_49713991_49714040	0.726626	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.11|transient receptor potential cation channel, subfamily M, member 4
hg19_v2_chr19_+_35521616_35521647	0.725237	GLI3	ENST00000595652.1|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr20_-_62199427_62199427	0.721885	GLI3	ENST00000427522.2|HELZ2|ENSG00000130589.12|helicase with zinc finger 2, transcriptional coactivator
hg19_v2_chr19_+_35521572_35521588	0.70475	GLI3	ENST00000262631.5|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr6_-_29648887_29648944	0.687569	GLI3	ENST00000376883.1|ZFP57|ENSG00000204644.5|ZFP57 zinc finger protein
hg19_v2_chr5_+_150157444_150157508	0.631185	GLI3	ENST00000526627.1|SMIM3|ENSG00000256235.1|small integral membrane protein 3
hg19_v2_chr22_+_31489344_31489371	0.627983	GLI3	ENST00000404574.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr11_+_64053311_64053387	0.621183	GLI3	ENST00000540370.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr5_+_113769205_113769227	0.608296	GLI3	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr10_-_112255945_112256004	0.5896	GLI3	ENST00000609514.1|RP11-525A16.4|ENSG00000273143.1|RP11-525A16.4	ENST00000607952.1|RP11-525A16.4|ENSG00000273143.1|RP11-525A16.4
hg19_v2_chr18_+_70536215_70536275	0.589522	GLI3	ENST00000578967.1|RP11-676J15.1|ENSG00000263958.1|RP11-676J15.1
hg19_v2_chr6_-_32784687_32784839	0.582021	GLI3	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr11_+_5712234_5712264	0.570347	GLI3	ENST00000414641.1|TRIM22|ENSG00000132274.11|tripartite motif containing 22
hg19_v2_chr12_-_54779511_54779577	0.561445	GLI3	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr15_+_67430339_67430366	0.560347	GLI3	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr20_-_61885826_61885892	0.554366	GLI3	ENST00000370316.3|NKAIN4|ENSG00000101198.10|Na+/K+ transporting ATPase interacting 4
hg19_v2_chr1_+_11724167_11724197	0.545174	GLI3	ENST00000376753.4|FBXO6|ENSG00000116663.6|F-box protein 6
hg19_v2_chr16_-_89268070_89268100	0.543742	GLI3	ENST00000562855.2|SLC22A31|ENSG00000259803.2|solute carrier family 22, member 31
hg19_v2_chr5_-_176827631_176827637	0.537962	GLI3	ENST00000358571.2|PFN3|ENSG00000196570.2|profilin 3
hg19_v2_chr20_+_62327996_62328021	0.520173	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr3_-_169482840_169482855	0.517148	GLI3	ENST00000602385.1|TERC|ENSG00000270141.2|telomerase RNA component
hg19_v2_chr3_-_43663519_43663560	0.507796	GLI3	ENST00000427171.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000292246.3|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr21_-_33984456_33984726	0.503782	GLI3	ENST00000431216.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000553001.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000440966.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr3_+_15469058_15469141	0.50078	GLI3	ENST00000432764.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chr6_-_33756867_33756950	0.494456	GLI3	ENST00000293760.5|LEMD2|ENSG00000161904.7|LEM domain containing 2
hg19_v2_chr1_+_36554470_36554519	0.487693	GLI3	ENST00000373178.4|ADPRHL2|ENSG00000116863.10|ADP-ribosylhydrolase like 2
hg19_v2_chr22_-_50970506_50970561	0.48569	GLI3	ENST00000428989.2|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000403326.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr11_-_627143_627187	0.475127	GLI3	ENST00000176195.3|SCT|ENSG00000070031.3|secretin
hg19_v2_chr1_-_228353112_228353213	0.466975	GLI3	ENST00000366713.1|IBA57-AS1|ENSG00000203684.5|IBA57 antisense RNA 1 (head to head)
hg19_v2_chr5_-_150460914_150460997	0.463487	GLI3	ENST00000389378.2|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr6_-_26027480_26027522	0.459115	GLI3	ENST00000377364.3|HIST1H4B|ENSG00000124529.3|histone cluster 1, H4b
hg19_v2_chrX_-_52260355_52260363	0.451194	GLI3	ENST00000375602.1|XAGE1A|ENSG00000204379.6|X antigen family, member 1A 	ENST00000399800.3|XAGE1A|ENSG00000204379.6|X antigen family, member 1A
hg19_v2_chr2_+_131862872_131862885	0.449515	GLI3	ENST00000439822.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr17_+_18647326_18647388	0.448481	GLI3	ENST00000395667.1|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000395665.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000308799.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000301938.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10
hg19_v2_chr11_-_61646054_61646115	0.443938	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr19_+_41117770_41117817	0.440193	GLI3	ENST00000601032.1|LTBP4|ENSG00000090006.13|latent transforming growth factor beta binding protein 4
hg19_v2_chr10_-_18948208_18948219	0.432813	GLI3	ENST00000607346.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr16_+_56691838_56691862	0.428171	GLI3	ENST00000394501.2|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr20_+_43343517_43343580	0.426361	GLI3	ENST00000372865.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr7_+_45928079_45928096	0.423284	GLI3	ENST00000468955.1|IGFBP1|ENSG00000146678.5|insulin-like growth factor binding protein 1
hg19_v2_chr3_-_48672859_48672926	0.420966	GLI3	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chrX_+_52511761_52511769	0.419297	GLI3	ENST00000399795.3|XAGE1C|ENSG00000183461.12|X antigen family, member 1C 	ENST00000375589.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr15_+_90728145_90728213	0.414977	GLI3	ENST00000561085.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000379122.3|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000332496.6|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr5_+_150157860_150157883	0.413599	GLI3	ENST00000600109.1|AC010441.1|ENSG00000269636.1|AC010441.1
hg19_v2_chr12_+_111843749_111843763	0.409353	GLI3	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr1_-_47697387_47697457	0.408071	GLI3	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chr17_-_54991395_54991453	0.405685	GLI3	ENST00000316881.4|TRIM25|ENSG00000121060.10|tripartite motif containing 25
hg19_v2_chr17_+_73750699_73750793	0.404745	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr2_+_201936458_201936467	0.402596	GLI3	ENST00000237889.4|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
hg19_v2_chr22_+_31488433_31488454	0.401909	GLI3	ENST00000455608.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr19_+_35521699_35521725	0.390798	GLI3	ENST00000415950.3|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr3_-_176914998_176915021	0.390561	GLI3	ENST00000431421.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000422066.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000413084.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr6_+_31465849_31465863	0.390551	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr18_+_21594384_21594539	0.38944	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chr5_-_172755056_172755219	0.38558	GLI3	ENST00000520648.1|STC2|ENSG00000113739.6|stanniocalcin 2
hg19_v2_chr19_+_39989535_39989562	0.38466	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr2_+_228736335_228736397	0.38047	GLI3	ENST00000440997.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1 	ENST00000545118.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr17_-_34122596_34122711	0.374344	GLI3	ENST00000250144.8|MMP28|ENSG00000129270.11|matrix metallopeptidase 28
hg19_v2_chr11_-_111649074_111649123	0.372863	GLI3	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr7_-_41742697_41742714	0.372594	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr9_+_137533615_137533660	0.371515	GLI3	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr15_+_74287035_74287117	0.371446	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr20_-_23731893_23731920	0.370853	GLI3	ENST00000398402.1|CST1|ENSG00000170373.4|cystatin SN
hg19_v2_chr19_+_29493486_29493499	0.370274	GLI3	ENST00000589821.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2
hg19_v2_chr19_+_44084696_44084790	0.366271	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr19_+_45417504_45417589	0.365712	GLI3	ENST00000588750.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000588802.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr5_-_150460539_150460640	0.361784	GLI3	ENST00000520931.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000520695.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000521591.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000518977.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr3_-_43663389_43663511	0.359932	GLI3	ENST00000444344.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000456438.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000350459.4|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000396091.3|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000451430.2|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000428472.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000414522.2|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr8_-_145642267_145642279	0.35813	GLI3	ENST00000301305.3|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr9_+_134000948_134001043	0.357236	GLI3	ENST00000359428.5|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000411637.2|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000451030.1|NUP214|ENSG00000126883.12|nucleoporin 214kDa
hg19_v2_chr17_-_76921459_76921478	0.356472	GLI3	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr9_-_21368075_21368075	0.355725	GLI3	ENST00000449498.1|IFNA13|ENSG00000233816.2|interferon, alpha 13
hg19_v2_chr9_-_98079965_98080008	0.353385	GLI3	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr2_+_10560147_10560201	0.353151	GLI3	ENST00000422133.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr5_+_12574944_12574973	0.347529	GLI3	ENST00000505877.1|CT49|ENSG00000248131.1|cancer/testis antigen 49 (non-protein coding) 	ENST00000513051.1|CT49|ENSG00000248131.1|cancer/testis antigen 49 (non-protein coding) 	ENST00000505196.1|CT49|ENSG00000248131.1|cancer/testis antigen 49 (non-protein coding)
hg19_v2_chr19_-_19051993_19052073	0.345661	GLI3	ENST00000594794.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000355887.6|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000392351.3|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila) 	ENST00000596482.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr19_+_45418067_45418126	0.345504	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr16_+_77233294_77233341	0.344834	GLI3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr7_+_76101379_76101379	0.342279	GLI3	ENST00000429179.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila)
hg19_v2_chr4_-_177713788_177713881	0.341963	GLI3	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr17_+_40118805_40118900	0.341683	GLI3	ENST00000591072.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000587679.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000393888.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000441615.2|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr17_+_50939459_50939481	0.338734	GLI3	ENST00000412360.1|AC102948.2|ENSG00000226364.1|Uncharacterized protein
hg19_v2_chr2_-_136875712_136875735	0.338499	GLI3	ENST00000241393.3|CXCR4|ENSG00000121966.6|chemokine (C-X-C motif) receptor 4
hg19_v2_chr19_+_35532612_35532676	0.337192	GLI3	ENST00000600390.1|HPN|ENSG00000105707.9|hepsin 	ENST00000597419.1|HPN|ENSG00000105707.9|hepsin
hg19_v2_chr6_+_31465892_31465937	0.336135	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr22_-_50964849_50964903	0.331472	GLI3	ENST00000543927.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein 	ENST00000423348.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein
hg19_v2_chr12_-_132690573_132690704	0.328601	GLI3	ENST00000397325.2|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000538356.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr19_+_39989580_39989608	0.327517	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr1_+_155278625_155278745	0.325599	GLI3	ENST00000368356.4|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase 	ENST00000356657.6|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr16_+_56691606_56691719	0.3254	GLI3	ENST00000334350.6|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr12_-_54813229_54813273	0.325301	GLI3	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr7_-_100034060_100034188	0.318998	GLI3	ENST00000292330.2|PPP1R35|ENSG00000160813.2|protein phosphatase 1, regulatory subunit 35
hg19_v2_chr8_-_40200903_40200921	0.318954	GLI3	ENST00000522486.1|CTA-392C11.1|ENSG00000253802.1|CTA-392C11.1
hg19_v2_chr19_+_676385_676403	0.317755	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr6_-_30684898_30684957	0.317537	GLI3	ENST00000422266.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1 	ENST00000416571.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr1_+_155278539_155278559	0.316402	GLI3	ENST00000447866.1|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr11_-_64646086_64646191	0.316352	GLI3	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr11_+_123301012_123301058	0.313762	GLI3	ENST00000533341.1|AP000783.1|ENSG00000254667.1|Uncharacterized protein
hg19_v2_chr3_+_184081137_184081155	0.313195	GLI3	ENST00000443489.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr17_+_40118759_40118772	0.312223	GLI3	ENST00000393892.3|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr7_+_2443202_2443260	0.311336	GLI3	ENST00000258711.6|CHST12|ENSG00000136213.7|carbohydrate (chondroitin 4) sulfotransferase 12
hg19_v2_chr17_+_7210898_7210918	0.309319	GLI3	ENST00000572815.1|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr17_+_32582293_32582312	0.308362	GLI3	ENST00000580907.1|CCL2|ENSG00000108691.5|chemokine (C-C motif) ligand 2 	ENST00000225831.4|CCL2|ENSG00000108691.5|chemokine (C-C motif) ligand 2
hg19_v2_chr19_-_10213335_10213472	0.307568	GLI3	ENST00000592641.1|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6 	ENST00000253109.4|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6
hg19_v2_chr14_+_29236269_29236287	0.305576	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr19_+_35629702_35629742	0.304753	GLI3	ENST00000351325.4|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1
hg19_v2_chr22_-_20255212_20255212	0.302208	GLI3	ENST00000416372.1|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr1_+_104615595_104615645	0.301907	GLI3	ENST00000418362.1|RP11-364B6.1|ENSG00000215869.3|RP11-364B6.1
hg19_v2_chr16_-_68057770_68057770	0.301697	GLI3	ENST00000332395.5|DDX28|ENSG00000182810.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
hg19_v2_chr17_-_73851285_73851501	0.301612	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr1_-_160990886_160990921	0.301358	GLI3	ENST00000537746.1|F11R|ENSG00000158769.13|F11 receptor
hg19_v2_chr10_-_77161004_77161176	0.299352	GLI3	ENST00000418818.2|RP11-399K21.11|ENSG00000270087.1|RP11-399K21.11
hg19_v2_chr1_-_153585539_153585559	0.296938	GLI3	ENST00000368706.4|S100A16|ENSG00000188643.6|S100 calcium binding protein A16
hg19_v2_chr11_+_46403303_46403316	0.295872	GLI3	ENST00000407067.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395565.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr3_+_11314099_11314122	0.294369	GLI3	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr19_-_54693401_54693491	0.29316	GLI3	ENST00000338624.6|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr15_-_101817492_101817519	0.293128	GLI3	ENST00000528346.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000531964.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr3_-_192635943_192635955	0.290456	GLI3	ENST00000392452.2|MB21D2|ENSG00000180611.6|Mab-21 domain containing 2
hg19_v2_chr9_+_136223414_136223474	0.28953	GLI3	ENST00000371964.4|SURF2|ENSG00000148291.5|surfeit 2
hg19_v2_chr20_+_43343476_43343487	0.288614	GLI3	ENST00000372868.2|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr11_-_104817919_104817919	0.288272	GLI3	ENST00000533252.1|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr11_+_69061594_69061635	0.286205	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr18_+_3451646_3451722	0.285619	GLI3	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chrX_-_48271344_48271344	0.283252	GLI3	ENST00000376884.2|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B 	ENST00000396928.1|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B
hg19_v2_chr1_+_180165672_180165817	0.282185	GLI3	ENST00000443059.1|QSOX1|ENSG00000116260.12|quiescin Q6 sulfhydryl oxidase 1
hg19_v2_chr6_-_31324943_31324965	0.280981	GLI3	ENST00000412585.2|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B 	ENST00000434333.1|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B
hg19_v2_chr16_+_3115611_3115813	0.280307	GLI3	ENST00000530890.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000444393.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000533097.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000008180.9|IL32|ENSG00000008517.12|interleukin 32 	ENST00000396890.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525228.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548652.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525377.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000530538.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000549213.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552936.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548476.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552664.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552356.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000551513.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000382213.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548246.1|IL32|ENSG00000008517.12|interleukin 32
hg19_v2_chr1_-_28559502_28559570	0.278264	GLI3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr19_-_55895966_55895966	0.278116	GLI3	ENST00000444469.3|TMEM238|ENSG00000233493.3|transmembrane protein 238
hg19_v2_chr19_-_54618650_54618688	0.277703	GLI3	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr19_+_4198072_4198137	0.276794	GLI3	ENST00000262970.5|ANKRD24|ENSG00000089847.8|ankyrin repeat domain 24
hg19_v2_chr11_-_65150103_65150148	0.274769	GLI3	ENST00000294187.6|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000398802.1|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000360662.3|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000377152.2|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45 	ENST00000530936.1|SLC25A45|ENSG00000162241.8|solute carrier family 25, member 45
hg19_v2_chr19_+_45417921_45417970	0.273157	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr19_-_11616645_11616738	0.272572	GLI3	ENST00000293771.5|ZNF653|ENSG00000161914.5|zinc finger protein 653
hg19_v2_chr16_+_27325202_27325313	0.270547	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr5_-_180237445_180237462	0.267814	GLI3	ENST00000393340.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr19_-_42931567_42931581	0.26642	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr14_+_101292445_101292485	0.265482	GLI3	ENST00000429159.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000520714.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000522771.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000424076.3|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000423456.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000521404.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000556736.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000451743.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000398518.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000554639.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000452120.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000519709.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000412736.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr19_+_7599597_7599642	0.264958	GLI3	ENST00000414982.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000450331.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr1_+_150522222_150522315	0.26484	GLI3	ENST00000369039.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr17_-_76899275_76899302	0.263889	GLI3	ENST00000322630.2|DDC8|ENSG00000178404.5|Protein DDC8 homolog  	ENST00000586713.1|DDC8|ENSG00000178404.5|Protein DDC8 homolog
hg19_v2_chr19_+_7599128_7599150	0.263105	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chrX_+_51928002_51928017	0.262305	GLI3	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr7_-_99680171_99680204	0.262218	GLI3	ENST00000428683.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr19_-_16653226_16653275	0.258575	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr16_+_58033450_58033483	0.257395	GLI3	ENST00000561743.1|USB1|ENSG00000103005.7|U6 snRNA biogenesis 1
hg19_v2_chr1_-_212873267_212873332	0.256601	GLI3	ENST00000243440.1|BATF3|ENSG00000123685.4|basic leucine zipper transcription factor, ATF-like 3
hg19_v2_chr19_-_59070239_59070359	0.2559	GLI3	ENST00000595957.1|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M 	ENST00000253023.3|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M
hg19_v2_chr11_+_114168085_114168222	0.255211	GLI3	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chrX_-_51812268_51812368	0.254764	GLI3	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr14_+_101295948_101296031	0.253967	GLI3	ENST00000452514.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr3_-_88108212_88108223	0.253135	GLI3	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr12_-_120687948_120687971	0.253062	GLI3	ENST00000458477.2|PXN|ENSG00000089159.11|paxillin
hg19_v2_chr11_+_89867681_89867697	0.252699	GLI3	ENST00000534061.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr5_+_175490540_175490540	0.252153	GLI3	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr2_-_233877912_233877982	0.251244	GLI3	ENST00000264051.3|NGEF|ENSG00000066248.10|neuronal guanine nucleotide exchange factor
hg19_v2_chr16_+_57844549_57844549	0.250842	GLI3	ENST00000564282.1|CTD-2600O9.1|ENSG00000187185.3|uncharacterized protein LOC388282
hg19_v2_chr17_+_81037473_81037567	0.250202	GLI3	ENST00000320095.7|METRNL|ENSG00000176845.8|meteorin, glial cell differentiation regulator-like
hg19_v2_chr20_+_43343886_43344020	0.249715	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr10_-_97050777_97050806	0.249105	GLI3	ENST00000329399.6|PDLIM1|ENSG00000107438.4|PDZ and LIM domain 1
hg19_v2_chr1_+_154947126_154947147	0.249087	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr15_+_74287118_74287144	0.249086	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr5_+_175487692_175487692	0.248188	GLI3	ENST00000510151.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr20_-_30310656_30310685	0.247692	GLI3	ENST00000376055.4|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr19_-_39832563_39832623	0.247243	GLI3	ENST00000599274.1|CTC-246B18.10|ENSG00000269246.1|CTC-246B18.10
hg19_v2_chr16_+_1730338_1730369	0.246472	GLI3	ENST00000566691.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000382710.4|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like
hg19_v2_chr20_+_49348081_49348096	0.245057	GLI3	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr1_+_150122034_150122170	0.244763	GLI3	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr8_-_82024290_82024310	0.244449	GLI3	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr19_-_12886327_12886434	0.243563	GLI3	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr15_-_43212996_43213013	0.242455	GLI3	ENST00000567840.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr19_+_58790314_58790358	0.242191	GLI3	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr7_-_108097144_108097175	0.241937	GLI3	ENST00000418239.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr8_+_145218673_145218673	0.240973	GLI3	ENST00000326134.5|MROH1|ENSG00000179832.13|maestro heat-like repeat family member 1
hg19_v2_chr1_-_11918988_11919013	0.240511	GLI3	ENST00000376468.3|NPPB|ENSG00000120937.8|natriuretic peptide B
hg19_v2_chr16_+_88704978_88705001	0.240486	GLI3	ENST00000244241.4|IL17C|ENSG00000124391.4|interleukin 17C
hg19_v2_chr11_+_1092184_1092208	0.240077	GLI3	ENST00000361558.6|MUC2|ENSG00000198788.7|mucin 2, oligomeric mucus/gel-forming
hg19_v2_chr16_-_88717482_88717560	0.23997	GLI3	ENST00000261623.3|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chrX_+_1734051_1734068	0.239801	GLI3	ENST00000381229.4|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase 	ENST00000381233.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr1_-_31661000_31661000	0.238996	GLI3	ENST00000263693.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000398657.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1 	ENST00000526106.1|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr21_-_33985127_33985191	0.238036	GLI3	ENST00000290155.3|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr20_-_30310693_30310719	0.237769	GLI3	ENST00000307677.4|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420653.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr17_-_6554747_6554802	0.237195	GLI3	ENST00000574128.1|MED31|ENSG00000108590.6|mediator complex subunit 31
hg19_v2_chr19_+_1103936_1104007	0.236716	GLI3	ENST00000354171.8|GPX4|ENSG00000167468.12|glutathione peroxidase 4 	ENST00000589115.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chr17_+_6554971_6554995	0.235926	GLI3	ENST00000391428.2|C17orf100|ENSG00000212734.4|chromosome 17 open reading frame 100
hg19_v2_chr19_-_54619006_54619055	0.234867	GLI3	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr6_-_159420780_159420872	0.234816	GLI3	ENST00000449822.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr12_+_52695617_52695649	0.234584	GLI3	ENST00000293525.5|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr6_+_35704804_35704813	0.232268	GLI3	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chrX_+_52511925_52511925	0.231078	GLI3	ENST00000375588.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr16_+_84209539_84209585	0.229971	GLI3	ENST00000569735.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr8_+_21899898_21899937	0.229802	GLI3	ENST00000518533.1|FGF17|ENSG00000158815.6|fibroblast growth factor 17 	ENST00000359441.3|FGF17|ENSG00000158815.6|fibroblast growth factor 17
hg19_v2_chr19_+_45204630_45204630	0.229648	GLI3	ENST00000405314.2|CEACAM16|ENSG00000213892.6|carcinoembryonic antigen-related cell adhesion molecule 16
hg19_v2_chr15_+_41913690_41913753	0.228832	GLI3	ENST00000563576.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein
hg19_v2_chr12_-_54778471_54778528	0.22706	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000394313.2|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000547210.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr10_-_134145321_134145369	0.226632	GLI3	ENST00000368625.4|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368619.3|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000456004.1|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368620.2|STK32C|ENSG00000165752.12|serine/threonine kinase 32C
hg19_v2_chr12_-_10542617_10542647	0.225947	GLI3	ENST00000240618.6|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr17_-_80231557_80231607	0.22484	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr1_-_229569834_229569849	0.223587	GLI3	ENST00000366684.3|ACTA1|ENSG00000143632.10|actin, alpha 1, skeletal muscle 	ENST00000366683.2|ACTA1|ENSG00000143632.10|actin, alpha 1, skeletal muscle
hg19_v2_chrX_-_9001351_9001351	0.221902	GLI3	ENST00000362066.3|FAM9B|ENSG00000177138.11|family with sequence similarity 9, member B
hg19_v2_chr12_-_54778444_54778457	0.221679	GLI3	ENST00000551771.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr19_-_4454081_4454090	0.221422	GLI3	ENST00000591919.1|UBXN6|ENSG00000167671.7|UBX domain protein 6
hg19_v2_chr7_-_96339132_96339166	0.22127	GLI3	ENST00000413065.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1
hg19_v2_chr8_-_40200877_40200902	0.220827	GLI3	ENST00000521030.1|CTA-392C11.1|ENSG00000253802.1|CTA-392C11.1
hg19_v2_chr19_+_18699599_18699623	0.220639	GLI3	ENST00000450195.2|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chrX_+_51927919_51927991	0.220144	GLI3	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr15_-_65067773_65067796	0.220138	GLI3	ENST00000300069.4|RBPMS2|ENSG00000166831.4|RNA binding protein with multiple splicing 2
hg19_v2_chr11_+_89867803_89867906	0.219596	GLI3	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr19_+_18699535_18699591	0.219133	GLI3	ENST00000358607.6|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chrX_-_48693955_48694035	0.21876	GLI3	ENST00000218230.5|PCSK1N|ENSG00000102109.7|proprotein convertase subtilisin/kexin type 1 inhibitor
hg19_v2_chr2_+_131769256_131769328	0.218248	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr6_+_35704855_35704874	0.217812	GLI3	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr19_+_48281842_48281853	0.217374	GLI3	ENST00000509570.2|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr5_-_157002775_157002790	0.216601	GLI3	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr16_-_17564738_17564834	0.215071	GLI3	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr1_-_47082495_47082563	0.212328	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chr12_-_57030115_57030177	0.212115	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr16_-_18430593_18430593	0.212107	GLI3	ENST00000525596.1|NPIPA8|ENSG00000214940.4|nuclear pore complex interacting protein family, member A8
hg19_v2_chr8_-_145642203_145642235	0.211582	GLI3	ENST00000526658.1|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr1_-_1310530_1310603	0.210437	GLI3	ENST00000338370.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000321751.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000378853.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr12_+_57984965_57985059	0.209963	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr22_-_46373004_46373016	0.209759	GLI3	ENST00000339464.4|WNT7B|ENSG00000188064.5|wingless-type MMTV integration site family, member 7B
hg19_v2_chr10_-_77161533_77161590	0.208527	GLI3	ENST00000535216.1|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr16_-_4465886_4465906	0.207136	GLI3	ENST00000539968.1|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr19_+_11350278_11350302	0.207059	GLI3	ENST00000252453.8|C19orf80|ENSG00000130173.9|chromosome 19 open reading frame 80
hg19_v2_chr21_-_33984865_33984883	0.205844	GLI3	ENST00000458138.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr16_-_18801582_18801630	0.205524	GLI3	ENST00000565420.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr22_+_45559722_45559881	0.205369	GLI3	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr11_+_1889880_1889903	0.204862	GLI3	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr19_+_49999631_49999711	0.204435	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr3_-_128840604_128840993	0.204363	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr14_+_93118813_93118870	0.204019	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.11|Ras and Rab interactor 3
hg19_v2_chr10_-_135171510_135171544	0.203588	GLI3	ENST00000278025.4|FUOM|ENSG00000148803.7|fucose mutarotase 	ENST00000368552.3|FUOM|ENSG00000148803.7|fucose mutarotase
hg19_v2_chrX_+_48542168_48542241	0.203163	GLI3	ENST00000376701.4|WAS|ENSG00000015285.6|Wiskott-Aldrich syndrome
hg19_v2_chr1_+_40420802_40420836	0.203009	GLI3	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr16_+_2014941_2014964	0.202984	GLI3	ENST00000531523.1|SNHG9|ENSG00000255198.3|small nucleolar RNA host gene 9 (non-protein coding)
hg19_v2_chr6_+_133135580_133135711	0.20288	GLI3	ENST00000230050.3|RPS12|ENSG00000112306.7|ribosomal protein S12
hg19_v2_chr9_-_131872928_131873088	0.202513	GLI3	ENST00000455830.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000393384.3|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000318080.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase
hg19_v2_chr2_+_131862900_131862926	0.202043	GLI3	ENST00000438882.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000538982.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000404460.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr10_-_7661623_7661637	0.201599	GLI3	ENST00000298441.6|ITIH5|ENSG00000123243.10|inter-alpha-trypsin inhibitor heavy chain family, member 5
hg19_v2_chr17_-_7761172_7761209	0.200745	GLI3	ENST00000333775.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575771.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_+_48281803_48281829	0.200607	GLI3	ENST00000601048.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr15_-_42343388_42343388	0.200261	GLI3	ENST00000399518.3|PLA2G4E|ENSG00000188089.9|phospholipase A2, group IVE
hg19_v2_chr22_+_39436862_39436924	0.199614	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr10_+_52751010_52751118	0.199187	GLI3	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr8_-_94928861_94928910	0.198644	GLI3	ENST00000607097.1|MIR378D2|ENSG00000264448.2|microRNA 378d-2
hg19_v2_chr17_+_7184986_7185076	0.198564	GLI3	ENST00000317370.8|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4 	ENST00000571308.1|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4
hg19_v2_chr19_+_45349630_45349783	0.198489	GLI3	ENST00000252483.5|PVRL2|ENSG00000130202.5|poliovirus receptor-related 2 (herpesvirus entry mediator B)
hg19_v2_chr16_+_31044812_31044931	0.198242	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr11_-_134094420_134094447	0.198114	GLI3	ENST00000526422.1|NCAPD3|ENSG00000151503.8|non-SMC condensin II complex, subunit D3 	ENST00000525485.1|NCAPD3|ENSG00000151503.8|non-SMC condensin II complex, subunit D3
hg19_v2_chr6_-_4135825_4135836	0.196946	GLI3	ENST00000380118.3|ECI2|ENSG00000198721.8|enoyl-CoA delta isomerase 2 	ENST00000413766.2|ECI2|ENSG00000198721.8|enoyl-CoA delta isomerase 2 	ENST00000361538.2|ECI2|ENSG00000198721.8|enoyl-CoA delta isomerase 2
hg19_v2_chr1_+_39456895_39456986	0.196414	GLI3	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr9_-_34381511_34381529	0.196137	GLI3	ENST00000379124.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr12_-_125002827_125002855	0.195433	GLI3	ENST00000420698.1|NCOR2|ENSG00000196498.9|nuclear receptor corepressor 2
hg19_v2_chr1_-_31845914_31845931	0.195225	GLI3	ENST00000373713.2|FABP3|ENSG00000121769.3|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)
hg19_v2_chr11_-_3078616_3078667	0.195085	GLI3	ENST00000401769.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000278224.9|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000397114.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000380525.4|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase
hg19_v2_chr18_-_31803435_31803515	0.194962	GLI3	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr5_+_173416162_173416187	0.19495	GLI3	ENST00000340147.6|C5orf47|ENSG00000185056.9|chromosome 5 open reading frame 47
hg19_v2_chr17_+_18996287_18996287	0.193998	GLI3	ENST00000399091.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000443876.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000428928.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042
hg19_v2_chr17_-_6554877_6554954	0.193968	GLI3	ENST00000225728.3|MED31|ENSG00000108590.6|mediator complex subunit 31 	ENST00000575197.1|MED31|ENSG00000108590.6|mediator complex subunit 31
hg19_v2_chr19_-_16653325_16653358	0.193832	GLI3	ENST00000546361.2|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr12_-_132690337_132690347	0.193695	GLI3	ENST00000541995.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000542942.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr11_-_61658853_61658932	0.19304	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr1_-_36863481_36863527	0.192521	GLI3	ENST00000315732.2|LSM10|ENSG00000181817.5|LSM10, U7 small nuclear RNA associated
hg19_v2_chr14_+_103592636_103592664	0.192465	GLI3	ENST00000333007.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr20_-_62258394_62258464	0.192388	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr11_+_122709200_122709215	0.191934	GLI3	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chr19_-_33793430_33793470	0.191242	GLI3	ENST00000498907.2|CEBPA|ENSG00000245848.2|CCAAT/enhancer binding protein (C/EBP), alpha
hg19_v2_chr17_-_7761256_7761397	0.190673	GLI3	ENST00000575208.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_-_53324884_53324922	0.190475	GLI3	ENST00000457749.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000414252.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000391783.2|ZNF28|ENSG00000198538.6|zinc finger protein 28
hg19_v2_chr19_-_50381606_50381716	0.1889	GLI3	ENST00000391830.1|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich)
hg19_v2_chr15_-_41120896_41120922	0.188533	GLI3	ENST00000299174.5|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D 	ENST00000427255.2|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D
hg19_v2_chr20_+_49411543_49411635	0.188131	GLI3	ENST00000609336.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4 	ENST00000445038.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4
hg19_v2_chr2_+_220379052_220379131	0.187909	GLI3	ENST00000347842.3|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4 	ENST00000358078.4|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4
hg19_v2_chr6_-_25832254_25832287	0.187849	GLI3	ENST00000476801.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000244527.4|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1 	ENST00000427328.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr1_+_154947148_154947175	0.187479	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chrX_-_53254358_53254406	0.187293	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr12_-_45270077_45270143	0.187274	GLI3	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr3_+_49591881_49591940	0.18675	GLI3	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr5_-_157002749_157002768	0.186185	GLI3	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr8_-_122653630_122653661	0.186113	GLI3	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr9_+_21440440_21440440	0.186072	GLI3	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr7_-_155089251_155089375	0.185701	GLI3	ENST00000609974.1|AC144652.1|ENSG00000273117.1|AC144652.1
hg19_v2_chr1_+_44440575_44440646	0.184903	GLI3	ENST00000532642.1|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000236067.4|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000471859.2|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
hg19_v2_chr9_+_95362539_95362672	0.184385	GLI3	ENST00000375579.3|CENPP|ENSG00000188312.9|centromere protein P
hg19_v2_chr1_-_153433120_153433177	0.183843	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr19_+_51152702_51152702	0.183701	GLI3	ENST00000425202.1|C19orf81|ENSG00000235034.2|chromosome 19 open reading frame 81
hg19_v2_chr1_+_92414952_92414991	0.183164	GLI3	ENST00000449584.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000427104.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000355011.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000448194.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000426141.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000450792.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000548992.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000552654.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000457265.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr16_+_67918708_67918820	0.183056	GLI3	ENST00000339176.3|NRN1L|ENSG00000188038.3|neuritin 1-like 	ENST00000576758.1|NRN1L|ENSG00000188038.3|neuritin 1-like
hg19_v2_chr9_+_34458771_34458850	0.183034	GLI3	ENST00000437363.1|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1 	ENST00000242317.4|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1
hg19_v2_chr5_+_167956121_167956121	0.182594	GLI3	ENST00000338333.4|FBLL1|ENSG00000188573.7|fibrillarin-like 1
hg19_v2_chr19_+_48281928_48281939	0.182383	GLI3	ENST00000593892.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr9_+_112542572_112542590	0.182324	GLI3	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr7_-_6570817_6570859	0.182204	GLI3	ENST00000435185.1|GRID2IP|ENSG00000215045.4|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein
hg19_v2_chr1_+_26605618_26605667	0.181945	GLI3	ENST00000270792.5|SH3BGRL3|ENSG00000142669.9|SH3 domain binding glutamic acid-rich protein like 3
hg19_v2_chr17_-_15522826_15522826	0.18176	GLI3	ENST00000395906.3|CDRT1|ENSG00000241322.4|CMT1A duplicated region transcript 1
hg19_v2_chr17_-_34808047_34808104	0.180838	GLI3	ENST00000592614.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000591542.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000400684.4|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000330458.7|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000341264.6|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000592987.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G
hg19_v2_chr11_-_73309112_73309221	0.180126	GLI3	ENST00000450446.2|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr1_-_95285764_95285837	0.179792	GLI3	ENST00000414374.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000421997.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000418366.2|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000452922.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr16_-_2059797_2059837	0.179747	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr6_+_31371337_31371449	0.179298	GLI3	ENST00000449934.2|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A 	ENST00000421350.1|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A
hg19_v2_chr16_+_84209738_84209748	0.178706	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr19_+_29493456_29493477	0.17823	GLI3	ENST00000591143.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2	ENST00000592653.1|CTD-2081K17.2|ENSG00000267014.1|CTD-2081K17.2
hg19_v2_chr1_+_155293702_155293729	0.177246	GLI3	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr3_+_141496990_141496990	0.177053	GLI3	ENST00000264952.2|GRK7|ENSG00000114124.2|G protein-coupled receptor kinase 7
hg19_v2_chr19_+_36602104_36602105	0.176512	GLI3	ENST00000585332.1|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3 	ENST00000262637.4|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3
hg19_v2_chr1_+_150521876_150521901	0.176114	GLI3	ENST00000369041.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4 	ENST00000538795.1|AL356356.1|ENSG00000225996.2|Protein LOC100996516  	ENST00000271643.4|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr2_+_235903480_235903488	0.175605	GLI3	ENST00000454947.1|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr6_-_20212630_20212726	0.175516	GLI3	ENST00000324607.7|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1 	ENST00000541730.1|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1 	ENST00000536798.1|MBOAT1|ENSG00000172197.9|membrane bound O-acyltransferase domain containing 1
hg19_v2_chr1_+_3388181_3388194	0.175473	GLI3	ENST00000418137.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16 	ENST00000413250.2|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chr16_-_18801643_18801705	0.175446	GLI3	ENST00000322989.4|RPS15A|ENSG00000134419.11|ribosomal protein S15a 	ENST00000563390.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr6_+_99282570_99282591	0.174544	GLI3	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr1_+_8021954_8022038	0.174398	GLI3	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr1_+_15479054_15479073	0.173782	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr2_+_65215604_65215625	0.17371	GLI3	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr1_-_209792111_209792143	0.173154	GLI3	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr15_-_101817616_101817710	0.172969	GLI3	ENST00000526049.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000398226.3|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000537379.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr11_+_46402297_46402306	0.172764	GLI3	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr11_-_74442430_74442481	0.172169	GLI3	ENST00000376332.3|CHRDL2|ENSG00000054938.11|chordin-like 2
hg19_v2_chr8_+_124194875_124194921	0.172147	GLI3	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr12_-_125348448_125348472	0.17187	GLI3	ENST00000339570.5|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr19_+_45417812_45417869	0.171857	GLI3	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr2_-_74779744_74779774	0.171263	GLI3	ENST00000409249.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr16_+_56691911_56691929	0.17122	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr22_-_50708781_50708852	0.170865	GLI3	ENST00000449719.2|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11 	ENST00000330651.6|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11
hg19_v2_chr17_-_202579_202633	0.170578	GLI3	ENST00000577079.1|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000331302.7|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000536489.2|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains)
hg19_v2_chr8_-_42065187_42065242	0.170415	GLI3	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr6_+_35436167_35436194	0.170288	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr19_+_677885_677942	0.170153	GLI3	ENST00000591552.2|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr16_-_1031259_1031327	0.170091	GLI3	ENST00000563837.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000570014.1|LMF1|ENSG00000103227.14|lipase maturation factor 1 	ENST00000563863.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000565069.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2
hg19_v2_chr19_+_35491174_35491242	0.170091	GLI3	ENST00000317991.5|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000504615.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr6_-_167040731_167040745	0.16937	GLI3	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chrX_+_48242863_48242939	0.168628	GLI3	ENST00000376886.2|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4 	ENST00000375517.3|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4
hg19_v2_chrX_+_1733876_1733894	0.168569	GLI3	ENST00000381241.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr10_-_49701686_49701697	0.168309	GLI3	ENST00000417247.2|ARHGAP22|ENSG00000128805.10|Rho GTPase activating protein 22
hg19_v2_chr16_+_16043406_16043434	0.168267	GLI3	ENST00000399410.3|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000399408.2|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000346370.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000351154.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000345148.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000349029.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
hg19_v2_chr8_+_22435762_22435792	0.168043	GLI3	ENST00000456545.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr3_+_101568349_101568365	0.167639	GLI3	ENST00000326151.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 	ENST00000326172.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
hg19_v2_chr9_+_135037334_135037450	0.167501	GLI3	ENST00000393229.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000360670.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000393228.4|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000372179.3|NTNG2|ENSG00000196358.6|netrin G2
hg19_v2_chrX_+_19362011_19362122	0.166862	GLI3	ENST00000379806.5|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000545074.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000540249.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000423505.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000417819.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000422285.2|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000355808.5|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000379805.3|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1
hg19_v2_chr19_-_49121054_49121145	0.166398	GLI3	ENST00000546623.1|RPL18|ENSG00000063177.8|ribosomal protein L18 	ENST00000084795.5|RPL18|ENSG00000063177.8|ribosomal protein L18
hg19_v2_chr5_+_218356_218453	0.164982	GLI3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr14_-_91976874_91976905	0.164965	GLI3	ENST00000557018.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr1_+_6845384_6845494	0.164677	GLI3	ENST00000303635.7|CAMTA1|ENSG00000171735.14|calmodulin binding transcription activator 1
hg19_v2_chr6_-_109776901_109776994	0.164092	GLI3	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr21_+_47268058_47268079	0.163958	GLI3	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr4_-_46391367_46391436	0.163824	GLI3	ENST00000503806.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000356504.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000514090.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000506961.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr11_-_407103_407195	0.163677	GLI3	ENST00000526395.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chr18_+_77623668_77623668	0.16342	GLI3	ENST00000316249.3|KCNG2|ENSG00000178342.4|potassium voltage-gated channel, subfamily G, member 2
hg19_v2_chr1_+_152178320_152178334	0.163363	GLI3	ENST00000429352.1|RP11-107M16.2|ENSG00000236427.1|RP11-107M16.2
hg19_v2_chr17_+_26989109_26989248	0.163278	GLI3	ENST00000314616.6|SUPT6H|ENSG00000109111.10|suppressor of Ty 6 homolog (S. cerevisiae) 	ENST00000347486.4|SUPT6H|ENSG00000109111.10|suppressor of Ty 6 homolog (S. cerevisiae)
hg19_v2_chr6_-_46620522_46620560	0.162765	GLI3	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr19_+_35491330_35491373	0.162432	GLI3	ENST00000411896.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000424536.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr16_+_29984962_29984962	0.161866	GLI3	ENST00000308893.4|TAOK2|ENSG00000149930.13|TAO kinase 2
hg19_v2_chr16_+_2564254_2564305	0.161741	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr22_+_51176624_51176663	0.16168	GLI3	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr17_+_62503073_62503143	0.161517	GLI3	ENST00000580188.1|CEP95|ENSG00000258890.2|centrosomal protein 95kDa 	ENST00000581056.1|CEP95|ENSG00000258890.2|centrosomal protein 95kDa
hg19_v2_chr8_-_145980808_145980922	0.160739	GLI3	ENST00000525191.1|ZNF251|ENSG00000198169.4|zinc finger protein 251
hg19_v2_chr1_+_44679370_44679513	0.160688	GLI3	ENST00000372290.4|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1
hg19_v2_chr11_-_62341445_62341499	0.15956	GLI3	ENST00000329251.4|EEF1G|ENSG00000254772.5|eukaryotic translation elongation factor 1 gamma
hg19_v2_chr10_-_135116364_135116485	0.159372	GLI3	ENST00000252936.3|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2 	ENST00000543663.1|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2
hg19_v2_chr12_-_8814669_8814767	0.159002	GLI3	ENST00000535411.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000540087.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr11_-_119252359_119252421	0.158824	GLI3	ENST00000455332.2|USP2|ENSG00000036672.11|ubiquitin specific peptidase 2
hg19_v2_chrX_-_153775426_153775469	0.158751	GLI3	ENST00000393562.2|G6PD|ENSG00000160211.11|glucose-6-phosphate dehydrogenase
hg19_v2_chr12_-_125348329_125348419	0.158669	GLI3	ENST00000546215.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000415380.2|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000261693.6|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000376788.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000545493.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr3_-_53080644_53080670	0.158056	GLI3	ENST00000497586.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr16_+_16425734_16425734	0.157673	GLI3	ENST00000381497.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr19_+_37464063_37464127	0.156911	GLI3	ENST00000586353.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000433993.1|ZNF568|ENSG00000198453.8|zinc finger protein 568 	ENST00000592567.1|ZNF568|ENSG00000198453.8|zinc finger protein 568
hg19_v2_chr2_+_220283091_220283108	0.156874	GLI3	ENST00000373960.3|DES|ENSG00000175084.7|desmin
hg19_v2_chr5_+_52083730_52083821	0.155871	GLI3	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr11_+_117070904_117070971	0.155517	GLI3	ENST00000529792.1|TAGLN|ENSG00000149591.12|transgelin
hg19_v2_chr12_+_120933859_120933899	0.154646	GLI3	ENST00000242577.6|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548214.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000392508.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr6_-_150212029_150212170	0.154541	GLI3	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr19_+_41281282_41281363	0.154515	GLI3	ENST00000263369.3|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr19_+_1905365_1905417	0.154182	GLI3	ENST00000329478.2|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3 	ENST00000409472.1|SCAMP4|ENSG00000227500.5|secretory carrier membrane protein 4 	ENST00000602400.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr12_+_57984943_57984964	0.154121	GLI3	ENST00000422156.3|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr6_-_35480705_35480718	0.153936	GLI3	ENST00000229771.6|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr19_-_58090240_58090295	0.15375	GLI3	ENST00000196489.3|ZNF416|ENSG00000083817.8|zinc finger protein 416
hg19_v2_chr5_-_58571935_58571951	0.15325	GLI3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr20_+_3776371_3776506	0.153009	GLI3	ENST00000245960.5|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr19_+_21688366_21688432	0.152543	GLI3	ENST00000358491.4|ZNF429|ENSG00000197013.5|zinc finger protein 429 	ENST00000597078.1|ZNF429|ENSG00000197013.5|zinc finger protein 429
hg19_v2_chr12_-_54582655_54582780	0.152388	GLI3	ENST00000504338.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514685.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000504797.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000513838.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000505128.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000337581.3|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000503306.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000243112.5|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514196.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000506169.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000507904.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000508394.2|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1
hg19_v2_chr2_+_201981663_201981762	0.152363	GLI3	ENST00000433445.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr17_+_7487146_7487211	0.152314	GLI3	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr4_-_6675550_6675580	0.151948	GLI3	ENST00000513179.1|RP11-539L10.3|ENSG00000251580.1|RP11-539L10.3	ENST00000515205.1|RP11-539L10.3|ENSG00000251580.1|RP11-539L10.3
hg19_v2_chr19_-_44285401_44285446	0.15169	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr19_+_48281946_48281974	0.151655	GLI3	ENST00000595615.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr19_-_21512144_21512191	0.151569	GLI3	ENST00000602023.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr19_+_35759968_35760042	0.151306	GLI3	ENST00000222305.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000595068.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000379134.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000594064.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000598058.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting
hg19_v2_chr3_-_127872625_127872757	0.151235	GLI3	ENST00000464873.1|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1
hg19_v2_chr6_-_109777128_109777203	0.150988	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr13_-_52733980_52734002	0.150781	GLI3	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr19_-_29218538_29218684	0.150351	GLI3	ENST00000592347.1|AC005307.3|ENSG00000267243.1|AC005307.3	ENST00000586528.1|AC005307.3|ENSG00000267243.1|AC005307.3
hg19_v2_chr19_+_45147098_45147223	0.1502	GLI3	ENST00000425690.3|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000344956.4|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000403059.4|PVR|ENSG00000073008.10|poliovirus receptor
hg19_v2_chr2_-_74726710_74726843	0.149888	GLI3	ENST00000377566.4|LBX2|ENSG00000179528.11|ladybird homeobox 2
hg19_v2_chr10_+_114206956_114207040	0.149852	GLI3	ENST00000432306.1|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A 	ENST00000393077.2|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A
hg19_v2_chr3_-_52739670_52739730	0.149801	GLI3	ENST00000497953.1|GLT8D1|ENSG00000016864.12|glycosyltransferase 8 domain containing 1
hg19_v2_chr11_-_535515_535592	0.149617	GLI3	ENST00000311189.7|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000451590.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000417302.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog
hg19_v2_chr14_-_61124977_61125037	0.149453	GLI3	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr7_-_92465868_92465922	0.149433	GLI3	ENST00000424848.2|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr1_+_44679113_44679152	0.1494	GLI3	ENST00000361745.6|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000446292.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000440641.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000436069.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000437511.1|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1
hg19_v2_chr21_-_31311818_31312013	0.148876	GLI3	ENST00000535441.1|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000309434.7|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000327783.4|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000389124.2|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000389125.3|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000399913.1|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1
hg19_v2_chr11_+_57435441_57435628	0.148688	GLI3	ENST00000528177.1|ZDHHC5|ENSG00000156599.6|zinc finger, DHHC-type containing 5
hg19_v2_chr19_-_4717835_4717900	0.148374	GLI3	ENST00000599248.1|DPP9|ENSG00000142002.12|dipeptidyl-peptidase 9
hg19_v2_chr12_-_10321754_10321781	0.147771	GLI3	ENST00000539518.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1
hg19_v2_chr19_+_36208877_36208921	0.147731	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr5_-_28809356_28809397	0.147584	GLI3	ENST00000504398.1|CTD-2134P3.1|ENSG00000250453.1|CTD-2134P3.1
hg19_v2_chr19_+_10217364_10217409	0.147536	GLI3	ENST00000430370.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr13_-_46756351_46756459	0.147349	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr5_-_180236811_180236880	0.146823	GLI3	ENST00000446023.2|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr21_-_45079341_45079400	0.146589	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chr7_+_63774321_63774408	0.146354	GLI3	ENST00000423484.2|ZNF736|ENSG00000234444.5|zinc finger protein 736
hg19_v2_chr20_-_6103666_6103737	0.14559	GLI3	ENST00000536936.1|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr8_+_133931648_133931685	0.145531	GLI3	ENST00000519178.1|TG|ENSG00000042832.7|thyroglobulin 	ENST00000542445.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chrX_+_135229600_135229624	0.145323	GLI3	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr19_-_13213954_13214021	0.145237	GLI3	ENST00000590974.1|LYL1|ENSG00000104903.4|lymphoblastic leukemia derived sequence 1
hg19_v2_chr19_+_54619125_54619189	0.144954	GLI3	ENST00000445811.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000419967.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000445124.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000447810.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31
hg19_v2_chr8_-_61880248_61880334	0.144671	GLI3	ENST00000525556.1|AC022182.3|ENSG00000254802.1|AC022182.3
hg19_v2_chr19_+_4153598_4153665	0.144653	GLI3	ENST00000078445.2|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000252587.3|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000595923.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000602257.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3 	ENST00000602147.1|CREB3L3|ENSG00000060566.9|cAMP responsive element binding protein 3-like 3
hg19_v2_chr19_+_41816053_41816178	0.144644	GLI3	ENST00000269967.3|CCDC97|ENSG00000142039.3|coiled-coil domain containing 97
hg19_v2_chr16_+_88493879_88493879	0.144349	GLI3	ENST00000565624.1|ZNF469|ENSG00000225614.2|zinc finger protein 469 	ENST00000437464.1|ZNF469|ENSG00000225614.2|zinc finger protein 469
hg19_v2_chr16_-_2059748_2059777	0.144323	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr17_-_7760779_7760896	0.14415	GLI3	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr16_+_3508096_3508130	0.144105	GLI3	ENST00000577013.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000570819.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit
hg19_v2_chr15_+_27516674_27516709	0.143706	GLI3	ENST00000554696.1|GABRG3|ENSG00000182256.8|gamma-aminobutyric acid (GABA) A receptor, gamma 3
hg19_v2_chr1_+_24117627_24117659	0.143693	GLI3	ENST00000400061.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr16_+_28834303_28834467	0.143676	GLI3	ENST00000340394.8|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000325215.6|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000395547.2|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000336783.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000382686.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000564304.1|ATXN2L|ENSG00000168488.14|ataxin 2-like
hg19_v2_chr17_-_42031300_42031313	0.143651	GLI3	ENST00000592796.1|PYY|ENSG00000131096.6|peptide YY
hg19_v2_chr22_-_50700140_50700254	0.143503	GLI3	ENST00000215659.8|MAPK12|ENSG00000188130.9|mitogen-activated protein kinase 12
hg19_v2_chr11_-_64511789_64512061	0.143243	GLI3	ENST00000419843.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394430.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr19_+_44037334_44037365	0.143187	GLI3	ENST00000314228.5|ZNF575|ENSG00000176472.6|zinc finger protein 575
hg19_v2_chr15_+_45544426_45544451	0.14303	GLI3	ENST00000347644.3|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2 	ENST00000560438.1|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2
hg19_v2_chr3_-_176914963_176914980	0.142464	GLI3	ENST00000450267.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000431674.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr9_+_112542591_112542769	0.142438	GLI3	ENST00000483909.1|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000314527.4|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000413420.1|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000302798.7|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000555236.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000510514.5|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr12_-_6798523_6798548	0.142369	GLI3	ENST00000319770.3|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr11_+_68228186_68228281	0.142361	GLI3	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr9_+_4839762_4839779	0.14235	GLI3	ENST00000448872.2|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000441844.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr17_-_34757039_34757050	0.142282	GLI3	ENST00000455054.2|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000308078.7|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr12_-_6798616_6798684	0.141774	GLI3	ENST00000355772.4|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000417772.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396801.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396799.2|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr11_+_76493294_76493332	0.141669	GLI3	ENST00000533752.1|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr18_+_3448455_3448497	0.141637	GLI3	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chrX_+_46940254_46940264	0.14101	GLI3	ENST00000336169.3|RGN|ENSG00000130988.8|regucalcin
hg19_v2_chr16_-_4466622_4466665	0.140898	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chrX_+_106449862_106449880	0.140636	GLI3	ENST00000372453.3|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3 	ENST00000535523.1|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3
hg19_v2_chr5_-_168727713_168727755	0.140517	GLI3	ENST00000404867.3|SLIT3|ENSG00000184347.10|slit homolog 3 (Drosophila)
hg19_v2_chr19_-_39226045_39226071	0.140461	GLI3	ENST00000597987.1|CAPN12|ENSG00000182472.4|calpain 12 	ENST00000595177.1|CAPN12|ENSG00000182472.4|calpain 12
hg19_v2_chr11_-_117103208_117103288	0.140227	GLI3	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr22_+_44427230_44427253	0.1397	GLI3	ENST00000444029.1|PARVB|ENSG00000188677.10|parvin, beta
hg19_v2_chr2_+_217363793_217363823	0.139696	GLI3	ENST00000456586.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000598925.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000427280.2|RPL37A|ENSG00000197756.5|ribosomal protein L37a
hg19_v2_chr7_-_96339167_96339203	0.139314	GLI3	ENST00000444799.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1 	ENST00000417009.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1 	ENST00000248566.2|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1
hg19_v2_chr3_+_47844399_47844457	0.138808	GLI3	ENST00000446256.2|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30 	ENST00000445061.1|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr1_+_36789335_36789335	0.138618	GLI3	ENST00000373137.2|RP11-268J15.5|ENSG00000116883.8|RP11-268J15.5
hg19_v2_chrX_-_153707545_153707596	0.138413	GLI3	ENST00000357360.4|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr1_-_1310870_1310920	0.138298	GLI3	ENST00000338338.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chrX_-_108976449_108976501	0.138188	GLI3	ENST00000469857.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr16_+_57702099_57702202	0.137811	GLI3	ENST00000333493.4|GPR97|ENSG00000182885.12|G protein-coupled receptor 97 	ENST00000327655.6|GPR97|ENSG00000182885.12|G protein-coupled receptor 97
hg19_v2_chr3_-_59035673_59035810	0.137541	GLI3	ENST00000491845.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000472469.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000471288.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000295966.7|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67
hg19_v2_chrX_-_48056199_48056233	0.137255	GLI3	ENST00000311798.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5 	ENST00000347757.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5
hg19_v2_chr17_+_79981144_79981202	0.137197	GLI3	ENST00000306688.3|LRRC45|ENSG00000169683.3|leucine rich repeat containing 45
hg19_v2_chr2_+_235860690_235860720	0.136718	GLI3	ENST00000416021.1|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr19_+_40697514_40697651	0.136625	GLI3	ENST00000253055.3|MAP3K10|ENSG00000130758.3|mitogen-activated protein kinase kinase kinase 10
hg19_v2_chrX_+_135229559_135229576	0.136401	GLI3	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr19_-_19754404_19754478	0.136331	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr5_-_180242534_180242567	0.136019	GLI3	ENST00000333055.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 	ENST00000513431.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr8_+_23104130_23104184	0.135949	GLI3	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr15_+_75498355_75498390	0.135711	GLI3	ENST00000567617.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr9_-_123676827_123676865	0.135553	GLI3	ENST00000546084.1|TRAF1|ENSG00000056558.6|TNF receptor-associated factor 1
hg19_v2_chr16_+_27324983_27324996	0.135437	GLI3	ENST00000566117.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr2_-_197458323_197458416	0.135211	GLI3	ENST00000452031.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr14_-_74959978_74959992	0.134913	GLI3	ENST00000541064.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr22_+_24951949_24951980	0.134832	GLI3	ENST00000402849.1|SNRPD3|ENSG00000100028.7|small nuclear ribonucleoprotein D3 polypeptide 18kDa
hg19_v2_chrX_+_55026763_55026831	0.134716	GLI3	ENST00000374987.3|APEX2|ENSG00000169188.4|APEX nuclease (apurinic/apyrimidinic endonuclease) 2
hg19_v2_chr20_+_48552908_48552949	0.134511	GLI3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr17_+_80193644_80193654	0.134484	GLI3	ENST00000582946.1|SLC16A3|ENSG00000141526.10|solute carrier family 16 (monocarboxylate transporter), member 3
hg19_v2_chr22_+_39760130_39760175	0.134398	GLI3	ENST00000381535.4|SYNGR1|ENSG00000100321.10|synaptogyrin 1
hg19_v2_chrX_-_108976410_108976445	0.134222	GLI3	ENST00000504980.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chrX_+_149531524_149531572	0.134091	GLI3	ENST00000370401.2|MAMLD1|ENSG00000013619.9|mastermind-like domain containing 1
hg19_v2_chr15_-_65809625_65809676	0.133883	GLI3	ENST00000560436.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr17_-_1029866_1029912	0.13335	GLI3	ENST00000570525.1|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr17_+_40440094_40440190	0.133221	GLI3	ENST00000546010.2|STAT5A|ENSG00000126561.12|signal transducer and activator of transcription 5A
hg19_v2_chr4_-_170948361_170948375	0.133188	GLI3	ENST00000393702.3|MFAP3L|ENSG00000198948.7|microfibrillar-associated protein 3-like
hg19_v2_chr1_-_47407136_47407154	0.133111	GLI3	ENST00000462347.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000371905.1|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11 	ENST00000310638.4|CYP4A11|ENSG00000187048.8|cytochrome P450, family 4, subfamily A, polypeptide 11
hg19_v2_chr11_+_66025938_66026016	0.132994	GLI3	ENST00000394066.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr21_+_45905448_45905460	0.132769	GLI3	ENST00000449713.1|AP001065.15|ENSG00000228709.1|AP001065.15
hg19_v2_chr7_+_44084262_44084332	0.132229	GLI3	ENST00000456905.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000440166.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000452943.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000468694.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000494774.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000490734.2|DBNL|ENSG00000136279.14|drebrin-like
hg19_v2_chr19_-_11494975_11495003	0.132148	GLI3	ENST00000222139.6|EPOR|ENSG00000187266.9|erythropoietin receptor 	ENST00000592375.2|EPOR|ENSG00000187266.9|erythropoietin receptor
hg19_v2_chrX_+_55246771_55246793	0.131529	GLI3	ENST00000289619.5|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated) 	ENST00000374955.3|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated)
hg19_v2_chr8_+_31497271_31497285	0.131184	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr10_-_77161650_77161664	0.131072	GLI3	ENST00000372524.4|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr9_+_131873227_131873243	0.13089	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr21_+_34804479_34804626	0.130797	GLI3	ENST00000421802.1|IFNGR2|ENSG00000159128.10|interferon gamma receptor 2 (interferon gamma transducer 1)
hg19_v2_chr14_-_102976091_102976133	0.130657	GLI3	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr19_+_40476912_40476939	0.130462	GLI3	ENST00000157812.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr11_+_64085560_64085736	0.130402	GLI3	ENST00000265462.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000352435.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000347941.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5
hg19_v2_chr2_+_11273179_11273261	0.13032	GLI3	ENST00000381585.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50 	ENST00000405022.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50
hg19_v2_chrX_+_151999511_151999561	0.130238	GLI3	ENST00000370274.3|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000440023.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000432467.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like
hg19_v2_chr3_+_127872265_127872344	0.129797	GLI3	ENST00000254730.6|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific 	ENST00000483457.1|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific
hg19_v2_chr19_-_3606590_3606658	0.129744	GLI3	ENST00000411851.3|TBXA2R|ENSG00000006638.7|thromboxane A2 receptor
hg19_v2_chr17_+_36283971_36284016	0.129721	GLI3	ENST00000327454.6|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F 	ENST00000378174.5|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F
hg19_v2_chr2_+_119981384_119981446	0.129514	GLI3	ENST00000393108.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000354888.5|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000450943.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393110.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393106.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000409811.1|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase 	ENST00000393107.2|STEAP3|ENSG00000115107.15|STEAP family member 3, metalloreductase
hg19_v2_chr9_-_127952032_127952098	0.128941	GLI3	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr2_-_224702740_224702761	0.128922	GLI3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr14_-_50778872_50778928	0.128766	GLI3	ENST00000555610.1|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase 	ENST00000261699.4|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase
hg19_v2_chr1_+_155178481_155178493	0.128629	GLI3	ENST00000368376.3|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr11_-_64511575_64511650	0.128369	GLI3	ENST00000431822.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000377486.3|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394432.3|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr21_-_46964306_46964332	0.128192	GLI3	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr19_+_40477062_40477112	0.127977	GLI3	ENST00000455878.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr21_-_35288284_35288284	0.127969	GLI3	ENST00000290299.2|ATP5O|ENSG00000241837.2|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
hg19_v2_chr15_-_101084547_101084618	0.127876	GLI3	ENST00000394113.1|CERS3|ENSG00000154227.9|ceramide synthase 3
hg19_v2_chr11_-_3013482_3013493	0.127677	GLI3	ENST00000529361.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000528968.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000534372.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000531291.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000526842.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4
hg19_v2_chr11_-_64085533_64085558	0.127575	GLI3	ENST00000544844.1|TRMT112|ENSG00000173113.2|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
hg19_v2_chr17_-_4090402_4090406	0.127539	GLI3	ENST00000574736.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr14_-_101295407_101295537	0.127114	GLI3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr20_-_36793663_36793735	0.127057	GLI3	ENST00000536701.1|TGM2|ENSG00000198959.7|transglutaminase 2 	ENST00000536724.1|TGM2|ENSG00000198959.7|transglutaminase 2
hg19_v2_chr22_+_20008595_20008644	0.126717	GLI3	ENST00000398042.2|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000450664.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000327374.4|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila) 	ENST00000432883.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila)
hg19_v2_chr14_+_75761099_75761114	0.126379	GLI3	ENST00000561000.1|RP11-293M10.5|ENSG00000259687.1|RP11-293M10.5	ENST00000558575.1|RP11-293M10.5|ENSG00000259687.1|RP11-293M10.5
hg19_v2_chr22_+_20193905_20193930	0.12601	GLI3	ENST00000609602.1|LINC00896|ENSG00000236499.2|long intergenic non-protein coding RNA 896
hg19_v2_chr4_-_159592996_159593059	0.125819	GLI3	ENST00000508457.1|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr19_-_38746979_38747050	0.125697	GLI3	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr6_+_170151708_170151762	0.12532	GLI3	ENST00000592367.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000590711.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000366772.2|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000592745.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000392095.4|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000366773.3|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000586341.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000418781.3|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000588437.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation
hg19_v2_chr11_+_576494_576521	0.12527	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr8_-_67525473_67525518	0.125151	GLI3	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr17_-_73149921_73149971	0.124973	GLI3	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr22_+_38349724_38349734	0.124865	GLI3	ENST00000470701.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr12_-_52887034_52887049	0.12469	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr2_+_228736321_228736332	0.124628	GLI3	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr17_-_18161870_18162084	0.124518	GLI3	ENST00000579294.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000545457.2|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000379450.4|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000578558.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila)
hg19_v2_chr18_+_59992527_59992555	0.12446	GLI3	ENST00000586569.1|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr12_-_118490403_118490414	0.124394	GLI3	ENST00000535496.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr12_-_108991778_108991800	0.124389	GLI3	ENST00000549447.1|TMEM119|ENSG00000183160.8|transmembrane protein 119
hg19_v2_chr19_-_59066452_59066496	0.123893	GLI3	ENST00000312547.2|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr3_-_38178527_38178632	0.123573	GLI3	ENST00000544624.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000444607.2|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000450296.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1
hg19_v2_chr7_+_143078652_143078754	0.123342	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr17_-_7137582_7137637	0.123297	GLI3	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr6_-_34073743_34073761	0.123109	GLI3	ENST00000609222.1|GRM4|ENSG00000124493.9|glutamate receptor, metabotropic 4
hg19_v2_chr1_-_226111929_226112026	0.123037	GLI3	ENST00000343818.6|PYCR2|ENSG00000143811.12|pyrroline-5-carboxylate reductase family, member 2 	ENST00000432920.2|RP4-559A3.7|ENSG00000255835.1|Uncharacterized protein
hg19_v2_chr1_-_16678914_16678989	0.123017	GLI3	ENST00000375592.3|FBXO42|ENSG00000037637.6|F-box protein 42
hg19_v2_chr9_-_113800705_113800781	0.122823	GLI3	ENST00000441240.1|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr1_-_13840483_13840543	0.122678	GLI3	ENST00000376085.3|LRRC38|ENSG00000162494.5|leucine rich repeat containing 38
hg19_v2_chr19_-_375970_375996	0.122571	GLI3	ENST00000346878.2|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr17_-_62502639_62502849	0.122246	GLI3	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr19_-_10024496_10024529	0.122072	GLI3	ENST00000593091.1|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr19_+_17448348_17448406	0.122015	GLI3	ENST00000324894.8|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000358792.7|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000600625.1|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial)
hg19_v2_chr17_+_8339340_8339412	0.121866	GLI3	ENST00000580012.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr2_-_47382442_47382517	0.121866	GLI3	ENST00000445927.2|C2orf61|ENSG00000239605.4|chromosome 2 open reading frame 61
hg19_v2_chr1_+_11994715_11994833	0.121651	GLI3	ENST00000449038.1|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000376369.3|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000429000.2|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000196061.4|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
hg19_v2_chr7_-_100860851_100860954	0.121405	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chr5_+_175976324_175976392	0.121384	GLI3	ENST00000261944.5|CDHR2|ENSG00000074276.6|cadherin-related family member 2
hg19_v2_chr17_-_13505219_13505299	0.12136	GLI3	ENST00000284110.1|HS3ST3A1|ENSG00000153976.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
hg19_v2_chr16_-_75285380_75285580	0.121314	GLI3	ENST00000393420.6|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000162330.5|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr12_+_6308881_6309041	0.121294	GLI3	ENST00000382518.1|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000536586.1|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr1_+_22138758_22138856	0.121249	GLI3	ENST00000344642.2|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2 	ENST00000543870.1|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2
hg19_v2_chrX_-_11308598_11308610	0.121134	GLI3	ENST00000380717.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr15_+_41186609_41186636	0.12103	GLI3	ENST00000220509.5|VPS18|ENSG00000104142.6|vacuolar protein sorting 18 homolog (S. cerevisiae)
hg19_v2_chrX_+_37545012_37545064	0.120687	GLI3	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr12_+_12509990_12510042	0.120674	GLI3	ENST00000542728.1|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr17_+_78193443_78193498	0.120624	GLI3	ENST00000577155.1|SLC26A11|ENSG00000181045.10|solute carrier family 26 (anion exchanger), member 11
hg19_v2_chr19_-_376011_376031	0.120552	GLI3	ENST00000342640.4|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr11_+_64053005_64053171	0.12015	GLI3	ENST00000538032.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr7_+_916183_916204	0.120135	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr6_-_133084564_133084578	0.120038	GLI3	ENST00000532012.1|VNN2|ENSG00000112303.9|vanin 2
hg19_v2_chr17_+_46184911_46184951	0.11996	GLI3	ENST00000580219.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000452859.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000393405.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000439357.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000359238.2|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr17_+_73084038_73084081	0.119931	GLI3	ENST00000578376.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000329783.4|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr2_-_201936302_201936416	0.119486	GLI3	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr6_-_30685214_30685230	0.119251	GLI3	ENST00000425072.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr13_-_24007815_24007872	0.118865	GLI3	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr4_-_48908822_48908845	0.118808	GLI3	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr7_-_112726393_112726567	0.118483	GLI3	ENST00000449591.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000449735.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000438062.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000424100.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr1_+_36621529_36621585	0.118373	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr14_+_50291993_50291993	0.118299	GLI3	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr11_+_1892102_1892126	0.118194	GLI3	ENST00000417766.1|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr15_-_44092295_44092423	0.117851	GLI3	ENST00000249714.3|SERINC4|ENSG00000184716.9|serine incorporator 4 	ENST00000299969.6|SERINC4|ENSG00000184716.9|serine incorporator 4 	ENST00000319327.6|SERINC4|ENSG00000184716.9|serine incorporator 4
hg19_v2_chr5_-_180076580_180076605	0.117839	GLI3	ENST00000502649.1|FLT4|ENSG00000037280.11|fms-related tyrosine kinase 4
hg19_v2_chr2_+_70314579_70314590	0.117811	GLI3	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr20_+_44637526_44637554	0.117697	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr11_-_47198380_47198448	0.117688	GLI3	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr18_+_59992514_59992525	0.117474	GLI3	ENST00000269485.7|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr1_+_11866207_11866268	0.117356	GLI3	ENST00000312413.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000346436.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr16_+_30064411_30064428	0.117247	GLI3	ENST00000338110.5|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr5_-_850676_850720	0.117245	GLI3	ENST00000424784.2|ZDHHC11|ENSG00000188818.8|zinc finger, DHHC-type containing 11
hg19_v2_chr10_+_104404644_104404726	0.117243	GLI3	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr19_+_7598890_7599090	0.117231	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr12_-_82153087_82153138	0.117102	GLI3	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr12_+_7055767_7055804	0.116893	GLI3	ENST00000447931.2|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6
hg19_v2_chr1_-_29508321_29508444	0.11686	GLI3	ENST00000546138.1|SRSF4|ENSG00000116350.11|serine/arginine-rich splicing factor 4
hg19_v2_chr22_+_41258250_41258269	0.116837	GLI3	ENST00000544094.1|XPNPEP3|ENSG00000196236.8|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
hg19_v2_chr18_-_70534745_70534810	0.116766	GLI3	ENST00000583169.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr5_+_179159813_179159851	0.116701	GLI3	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr7_+_119913688_119913728	0.116696	GLI3	ENST00000331113.4|KCND2|ENSG00000184408.5|potassium voltage-gated channel, Shal-related subfamily, member 2
hg19_v2_chr17_-_34592032_34592032	0.116643	GLI3	ENST00000457979.3|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr3_+_138067314_138067428	0.116508	GLI3	ENST00000423968.2|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr21_-_33984888_33984903	0.116041	GLI3	ENST00000382549.4|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59 	ENST00000540881.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr15_-_72523454_72523684	0.115928	GLI3	ENST00000565154.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000565184.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000389093.3|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000449901.2|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000335181.5|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000319622.6|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr19_-_48389651_48389656	0.115592	GLI3	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr7_-_994302_994333	0.115314	GLI3	ENST00000265846.5|ADAP1|ENSG00000105963.9|ArfGAP with dual PH domains 1
hg19_v2_chr7_+_100860949_100860983	0.115032	GLI3	ENST00000305105.2|ZNHIT1|ENSG00000106400.7|zinc finger, HIT-type containing 1
hg19_v2_chr17_-_36348610_36348666	0.114918	GLI3	ENST00000339023.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3 	ENST00000354664.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr1_+_15479021_15479053	0.114624	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr14_+_101295638_101295752	0.114591	GLI3	ENST00000523671.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr22_+_20008678_20008689	0.114089	GLI3	ENST00000434168.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila)
hg19_v2_chr15_-_26108355_26108417	0.113711	GLI3	ENST00000356865.6|ATP10A|ENSG00000206190.7|ATPase, class V, type 10A
hg19_v2_chr1_+_201857798_201857836	0.113639	GLI3	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr11_+_64009072_64009220	0.113431	GLI3	ENST00000535135.1|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa 	ENST00000394540.3|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa
hg19_v2_chr13_-_30948036_30948064	0.112985	GLI3	ENST00000447147.1|LINC00426|ENSG00000238121.1|long intergenic non-protein coding RNA 426 	ENST00000444319.1|LINC00426|ENSG00000238121.1|long intergenic non-protein coding RNA 426
hg19_v2_chr12_+_6977258_6977319	0.112948	GLI3	ENST00000488464.2|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000535434.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000493987.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1
hg19_v2_chr7_-_6066183_6066222	0.112887	GLI3	ENST00000422786.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1
hg19_v2_chr16_+_725650_725716	0.112885	GLI3	ENST00000352681.3|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila) 	ENST00000561556.1|RHBDL1|ENSG00000103269.9|rhomboid, veinlet-like 1 (Drosophila)
hg19_v2_chr9_-_34381536_34381602	0.112695	GLI3	ENST00000379126.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379127.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379133.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr19_+_42811093_42811109	0.112692	GLI3	ENST00000595750.1|PRR19|ENSG00000188368.5|proline rich 19
hg19_v2_chr11_+_18477369_18477431	0.112675	GLI3	ENST00000396213.3|LDHAL6A|ENSG00000166800.5|lactate dehydrogenase A-like 6A 	ENST00000280706.2|LDHAL6A|ENSG00000166800.5|lactate dehydrogenase A-like 6A
hg19_v2_chr11_+_18230727_18230755	0.112592	GLI3	ENST00000527059.1|RP11-113D6.10|ENSG00000189332.4|Putative mitochondrial carrier protein LOC494141
hg19_v2_chr12_-_48276710_48276725	0.112412	GLI3	ENST00000550314.1|VDR|ENSG00000111424.6|vitamin D (1,25- dihydroxyvitamin D3) receptor
hg19_v2_chr16_+_68679193_68679253	0.112367	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr17_-_17942473_17942523	0.112154	GLI3	ENST00000585101.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000474627.3|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000444058.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2
hg19_v2_chr2_-_197458271_197458319	0.111636	GLI3	ENST00000427457.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr1_+_167691191_167691389	0.111451	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr6_-_16761678_16761721	0.111258	GLI3	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr11_+_66025167_66025190	0.11097	GLI3	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr20_+_36888551_36888662	0.110896	GLI3	ENST00000418004.1|BPI|ENSG00000101425.8|bactericidal/permeability-increasing protein 	ENST00000451435.1|BPI|ENSG00000101425.8|bactericidal/permeability-increasing protein
hg19_v2_chr17_-_30186328_30186356	0.110891	GLI3	ENST00000302362.6|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr3_-_195538728_195538754	0.110835	GLI3	ENST00000349607.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated 	ENST00000346145.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chrX_+_17755563_17755618	0.110477	GLI3	ENST00000380045.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380041.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380043.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000398080.1|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila)
hg19_v2_chr1_+_243419306_243419422	0.110392	GLI3	ENST00000355875.4|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000391846.1|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000366541.3|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000343783.6|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8
hg19_v2_chr12_-_122751002_122751068	0.110212	GLI3	ENST00000267199.4|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr1_-_206671061_206671061	0.110157	GLI3	ENST00000367119.1|C1orf147|ENSG00000162888.4|chromosome 1 open reading frame 147
hg19_v2_chr21_-_36260980_36261011	0.110117	GLI3	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr1_+_13910194_13910339	0.110091	GLI3	ENST00000376057.4|PDPN|ENSG00000162493.12|podoplanin 	ENST00000510906.1|PDPN|ENSG00000162493.12|podoplanin
hg19_v2_chr11_-_414948_415017	0.109925	GLI3	ENST00000530494.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528209.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000431843.2|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528058.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chrX_+_51149767_51149829	0.109867	GLI3	ENST00000342995.2|CXorf67|ENSG00000187690.2|chromosome X open reading frame 67
hg19_v2_chr16_+_57702210_57702233	0.109862	GLI3	ENST00000450388.3|GPR97|ENSG00000182885.12|G protein-coupled receptor 97
hg19_v2_chr17_-_27278445_27278624	0.109779	GLI3	ENST00000268756.3|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584685.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr19_-_42573650_42573726	0.109463	GLI3	ENST00000593562.1|GRIK5|ENSG00000105737.5|glutamate receptor, ionotropic, kainate 5
hg19_v2_chr10_+_73079000_73079024	0.109351	GLI3	ENST00000373189.5|SLC29A3|ENSG00000198246.7|solute carrier family 29 (equilibrative nucleoside transporter), member 3
hg19_v2_chr2_+_171673072_171673225	0.10927	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr5_+_150226085_150226085	0.109227	GLI3	ENST00000522154.1|IRGM|ENSG00000237693.4|immunity-related GTPase family, M
hg19_v2_chr1_+_87170277_87170315	0.109071	GLI3	ENST00000535010.1|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr11_+_118958689_118958710	0.108984	GLI3	ENST00000535253.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000392841.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase
hg19_v2_chr16_+_30064444_30064528	0.108876	GLI3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr1_+_10490127_10490159	0.108875	GLI3	ENST00000602787.1|APITD1|ENSG00000175279.17|apoptosis-inducing, TAF9-like domain 1 	ENST00000602296.1|APITD1|ENSG00000175279.17|apoptosis-inducing, TAF9-like domain 1 	ENST00000400900.2|APITD1-CORT|ENSG00000251503.3|APITD1-CORT readthrough
hg19_v2_chr9_-_139334247_139334302	0.108605	GLI3	ENST00000371712.3|INPP5E|ENSG00000148384.11|inositol polyphosphate-5-phosphatase, 72 kDa
hg19_v2_chr1_-_155942086_155942145	0.108591	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr17_-_39203519_39203568	0.108418	GLI3	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr17_+_7253667_7253740	0.108221	GLI3	ENST00000570504.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 	ENST00000574499.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
hg19_v2_chr10_+_134145614_134145724	0.108206	GLI3	ENST00000368615.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000392638.2|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000344079.5|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000356571.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000368614.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr3_-_48130707_48130789	0.107952	GLI3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr19_+_58978463_58978476	0.107944	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chr7_-_128045984_128046026	0.107497	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr6_-_2903514_2903552	0.10721	GLI3	ENST00000380698.4|SERPINB9|ENSG00000170542.5|serpin peptidase inhibitor, clade B (ovalbumin), member 9
hg19_v2_chr19_-_59066327_59066389	0.106952	GLI3	ENST00000596708.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000601220.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000597848.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr17_-_26876350_26876417	0.106849	GLI3	ENST00000470125.1|UNC119|ENSG00000109103.7|unc-119 homolog (C. elegans)
hg19_v2_chr7_-_73668692_73668774	0.10662	GLI3	ENST00000352131.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa 	ENST00000055077.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa
hg19_v2_chr1_+_44399466_44399518	0.106616	GLI3	ENST00000498139.2|ARTN|ENSG00000117407.12|artemin 	ENST00000491846.1|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr17_+_73089382_73089451	0.106383	GLI3	ENST00000538213.2|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000584118.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr7_+_149412094_149412148	0.106319	GLI3	ENST00000255992.10|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1 	ENST00000319551.8|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chr3_+_101818088_101818088	0.106134	GLI3	ENST00000491959.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr19_+_44085189_44085189	0.105868	GLI3	ENST00000562365.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr22_-_31885514_31885573	0.105752	GLI3	ENST00000397525.1|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1
hg19_v2_chr9_-_34637718_34637791	0.105745	GLI3	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chr1_-_115053781_115053853	0.105503	GLI3	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr17_-_30185971_30186093	0.10546	GLI3	ENST00000378634.2|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr17_-_78120936_78120992	0.105344	GLI3	ENST00000576547.1|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3 	ENST00000269349.3|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3
hg19_v2_chr16_-_5116025_5116111	0.105247	GLI3	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr19_+_18283959_18283993	0.105102	GLI3	ENST00000597802.2|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr16_-_21452040_21452040	0.105081	GLI3	ENST00000521589.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr3_-_10332416_10332446	0.105054	GLI3	ENST00000450603.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449554.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr7_+_149411860_149411892	0.105047	GLI3	ENST00000486744.1|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chr19_+_10217270_10217321	0.104927	GLI3	ENST00000446223.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr1_+_92414928_92414944	0.104857	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr16_-_68269971_68270059	0.104748	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr2_-_47382414_47382431	0.104735	GLI3	ENST00000294947.2|C2orf61|ENSG00000239605.4|chromosome 2 open reading frame 61
hg19_v2_chr9_+_130860583_130860742	0.104557	GLI3	ENST00000373064.5|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v2_chr8_-_36636676_36636688	0.104479	GLI3	ENST00000524132.1|RP11-962G15.1|ENSG00000253363.1|RP11-962G15.1	ENST00000519451.1|RP11-962G15.1|ENSG00000253363.1|RP11-962G15.1
hg19_v2_chr6_-_133084580_133084605	0.104337	GLI3	ENST00000525270.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000530536.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000524919.1|VNN2|ENSG00000112303.9|vanin 2
hg19_v2_chr9_+_131873842_131873967	0.104278	GLI3	ENST00000417728.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr19_-_45926739_45926863	0.10424	GLI3	ENST00000589381.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000591636.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000013807.5|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000592023.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
hg19_v2_chr3_-_52273098_52273276	0.104107	GLI3	ENST00000499914.2|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2 	ENST00000597542.1|TLR9|ENSG00000239732.2|toll-like receptor 9 	ENST00000305533.5|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2
hg19_v2_chr17_+_8339189_8339285	0.104055	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr2_-_43823093_43823113	0.104053	GLI3	ENST00000405006.4|THADA|ENSG00000115970.14|thyroid adenoma associated
hg19_v2_chr12_+_31226779_31226834	0.103523	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr16_+_68678739_68678833	0.10349	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr11_-_110968081_110968109	0.103336	GLI3	ENST00000603154.1|RP11-89C3.4|ENSG00000271584.1|RP11-89C3.4
hg19_v2_chr7_+_47694842_47694842	0.103263	GLI3	ENST00000408988.2|C7orf65|ENSG00000221845.2|chromosome 7 open reading frame 65
hg19_v2_chr9_-_139258235_139258245	0.10313	GLI3	ENST00000371738.3|DNLZ|ENSG00000213221.4|DNL-type zinc finger
hg19_v2_chr10_+_52750930_52750950	0.103093	GLI3	ENST00000401604.2|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr16_+_2079501_2079528	0.103055	GLI3	ENST00000563587.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr7_-_2883928_2883993	0.102843	GLI3	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr15_+_45938079_45938105	0.102801	GLI3	ENST00000561493.1|SQRDL|ENSG00000137767.9|sulfide quinone reductase-like (yeast)
hg19_v2_chr19_-_17185848_17186010	0.102706	GLI3	ENST00000593360.1|HAUS8|ENSG00000131351.10|HAUS augmin-like complex, subunit 8
hg19_v2_chr8_+_94752349_94752349	0.102162	GLI3	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chr3_+_128598433_128598511	0.102039	GLI3	ENST00000308982.7|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9 	ENST00000514336.1|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9
hg19_v2_chr4_+_74735102_74735121	0.101875	GLI3	ENST00000395761.3|CXCL1|ENSG00000163739.4|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
hg19_v2_chr19_-_2739992_2740027	0.101857	GLI3	ENST00000545664.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000589363.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000455372.2|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3
hg19_v2_chr19_-_19281054_19281098	0.101683	GLI3	ENST00000424583.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000410050.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409224.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409447.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B
hg19_v2_chr2_-_208031542_208031595	0.101597	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr17_-_17494972_17495037	0.101521	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr11_-_506739_506821	0.101511	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr11_+_64052692_64052747	0.10151	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr1_-_32264250_32264354	0.101322	GLI3	ENST00000528579.1|SPOCD1|ENSG00000134668.8|SPOC domain containing 1
hg19_v2_chr11_-_128457446_128457461	0.101136	GLI3	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr2_+_201936707_201936753	0.100992	GLI3	ENST00000433898.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 	ENST00000454214.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
hg19_v2_chr1_+_21766588_21766637	0.100947	GLI3	ENST00000454000.2|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318220.6|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318249.5|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3
hg19_v2_chr10_-_27444143_27444195	0.10084	GLI3	ENST00000477432.1|YME1L1|ENSG00000136758.14|YME1-like 1 ATPase
hg19_v2_chr11_-_65629497_65629528	0.100553	GLI3	ENST00000532134.1|CFL1|ENSG00000172757.8|cofilin 1 (non-muscle)
hg19_v2_chr9_+_6758109_6758131	0.100521	GLI3	ENST00000536108.1|KDM4C|ENSG00000107077.13|lysine (K)-specific demethylase 4C
hg19_v2_chr14_-_106845789_106845851	0.100374	GLI3	ENST00000390617.2|IGHV3-35|ENSG00000211957.2|immunoglobulin heavy variable 3-35 (non-functional)
hg19_v2_chr3_-_107596910_107596940	0.100275	GLI3	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chrX_+_49160148_49160148	0.100195	GLI3	ENST00000407599.3|GAGE10|ENSG00000215274.5|G antigen 10
hg19_v2_chr19_+_36142147_36142211	0.100038	GLI3	ENST00000590618.1|COX6B1|ENSG00000126267.4|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)
hg19_v2_chr12_-_12509929_12510001	0.0999621	GLI3	ENST00000381800.2|LOH12CR2|ENSG00000205791.2|loss of heterozygosity, 12, chromosomal region 2 (non-protein coding)
hg19_v2_chr17_+_61473104_61473104	0.0998213	GLI3	ENST00000583016.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr1_-_245134273_245134390	0.0993631	GLI3	ENST00000607453.1|RP11-156E8.1|ENSG00000272195.1|Uncharacterized protein
hg19_v2_chr12_+_130646999_130647019	0.0992222	GLI3	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr11_-_65640198_65640281	0.0989847	GLI3	ENST00000528176.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr22_-_23922410_23922446	0.0989492	GLI3	ENST00000249053.3|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr9_-_130639997_130640022	0.0989405	GLI3	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr3_+_32993065_32993074	0.0989394	GLI3	ENST00000330953.5|CCR4|ENSG00000183813.6|chemokine (C-C motif) receptor 4
hg19_v2_chr19_-_40596767_40596825	0.0986042	GLI3	ENST00000599972.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000450241.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000595687.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A
hg19_v2_chr5_-_180668605_180668649	0.0985667	GLI3	ENST00000504128.1|GNB2L1|ENSG00000204628.7|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
hg19_v2_chrX_+_134166333_134166371	0.0985592	GLI3	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr17_-_21117902_21117937	0.098496	GLI3	ENST00000317635.5|TMEM11|ENSG00000178307.5|transmembrane protein 11
hg19_v2_chr22_-_28197486_28197544	0.0984336	GLI3	ENST00000302326.4|MN1|ENSG00000169184.5|meningioma (disrupted in balanced translocation) 1
hg19_v2_chrX_-_15332665_15332693	0.0981799	GLI3	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chr1_-_139379_139379	0.0980938	GLI3	ENST00000423372.3|AL627309.1|ENSG00000237683.5|Uncharacterized protein
hg19_v2_chr12_+_50017327_50017403	0.097915	GLI3	ENST00000261897.1|PRPF40B|ENSG00000110844.9|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
hg19_v2_chr10_-_79398127_79398156	0.0978239	GLI3	ENST00000372443.1|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr1_+_155178518_155178600	0.0977827	GLI3	ENST00000316721.4|MTX1|ENSG00000173171.10|metaxin 1
hg19_v2_chr17_-_79995553_79995608	0.0977505	GLI3	ENST00000581584.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000577712.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000582900.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000579155.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000306869.2|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase
hg19_v2_chr1_-_205782304_205782332	0.0975999	GLI3	ENST00000367137.3|SLC41A1|ENSG00000133065.6|solute carrier family 41 (magnesium transporter), member 1
hg19_v2_chr17_-_2207062_2207116	0.0975883	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr10_+_50887683_50887735	0.0975523	GLI3	ENST00000374113.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374111.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374112.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000535836.1|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53
hg19_v2_chrX_-_47489244_47489364	0.097376	GLI3	ENST00000469388.1|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000396992.3|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000377005.2|CFP|ENSG00000126759.8|complement factor properdin
hg19_v2_chr4_+_40194570_40194608	0.0972514	GLI3	ENST00000507851.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr3_-_176915036_176915047	0.0971601	GLI3	ENST00000427349.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000352800.5|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr2_-_27545921_27545981	0.0970288	GLI3	ENST00000402310.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405983.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000403262.2|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000428910.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000402722.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000399052.4|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000380044.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405076.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein
hg19_v2_chr11_-_65667884_65667895	0.096895	GLI3	ENST00000448083.2|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000531493.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000532401.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1
hg19_v2_chrX_+_49020121_49020334	0.0968817	GLI3	ENST00000415364.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked 	ENST00000376338.3|MAGIX|ENSG00000017621.11|MAGI family member, X-linked 	ENST00000425285.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr22_+_24990746_24990781	0.0968187	GLI3	ENST00000456869.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000411974.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr10_+_79626633_79626633	0.0966332	GLI3	ENST00000372387.1|AL391421.1|ENSG00000204049.1|Uncharacterized protein; cDNA FLJ43696 fis, clone TBAES2007964
hg19_v2_chr17_+_75450146_75450170	0.0962143	GLI3	ENST00000585929.1|SEPT9|ENSG00000184640.13|septin 9 	ENST00000590917.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr22_-_23922448_23922495	0.0960747	GLI3	ENST00000438703.1|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1 	ENST00000330377.2|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr3_+_183894566_183894669	0.0960225	GLI3	ENST00000439647.1|AP2M1|ENSG00000161203.9|adaptor-related protein complex 2, mu 1 subunit
hg19_v2_chr1_-_41487383_41487402	0.0958673	GLI3	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr21_+_45148735_45148791	0.0957152	GLI3	ENST00000327574.4|PDXK|ENSG00000160209.14|pyridoxal (pyridoxine, vitamin B6) kinase
hg19_v2_chr12_-_45270151_45270162	0.0957128	GLI3	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr6_+_27356497_27356557	0.0955156	GLI3	ENST00000244576.4|ZNF391|ENSG00000124613.4|zinc finger protein 391
hg19_v2_chr7_+_104581389_104581653	0.0952192	GLI3	ENST00000415513.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2	ENST00000417026.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2
hg19_v2_chr22_-_18256742_18256782	0.0946556	GLI3	ENST00000317361.7|BID|ENSG00000015475.14|BH3 interacting domain death agonist
hg19_v2_chr14_-_51561784_51561854	0.094617	GLI3	ENST00000360392.4|TRIM9|ENSG00000100505.9|tripartite motif containing 9
hg19_v2_chr7_-_24797032_24797162	0.094451	GLI3	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr1_+_63788730_63788730	0.0943952	GLI3	ENST00000371116.2|FOXD3|ENSG00000187140.4|forkhead box D3
hg19_v2_chr17_+_40714092_40714205	0.094384	GLI3	ENST00000420359.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000449624.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585811.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585909.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000586771.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000421097.2|COASY|ENSG00000068120.10|CoA synthase 	ENST00000591779.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587858.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587214.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587157.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000590958.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000393818.2|COASY|ENSG00000068120.10|CoA synthase
hg19_v2_chr20_+_61147651_61147666	0.0943679	GLI3	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr3_-_10334585_10334601	0.0942714	GLI3	ENST00000430179.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449238.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000437422.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000287656.7|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000457360.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000439975.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000446937.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr20_-_44420507_44420547	0.0940571	GLI3	ENST00000243938.4|WFDC3|ENSG00000124116.14|WAP four-disulfide core domain 3
hg19_v2_chr3_+_187930429_187930477	0.0939611	GLI3	ENST00000420410.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr19_-_2740036_2740150	0.0939113	GLI3	ENST00000586572.1|AC006538.4|ENSG00000267001.1|Uncharacterized protein  	ENST00000269740.4|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3
hg19_v2_chr12_-_6798025_6798102	0.0939017	GLI3	ENST00000542351.1|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000538829.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr15_+_49462397_49462430	0.0936913	GLI3	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr2_+_201170770_201170882	0.0934616	GLI3	ENST00000409988.3|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409385.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr6_+_17102489_17102489	0.093363	GLI3	ENST00000536551.1|STMND1|ENSG00000230873.4|stathmin domain containing 1
hg19_v2_chr1_-_110283138_110283138	0.0932708	GLI3	ENST00000256594.3|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr12_+_120031264_120031264	0.0932556	GLI3	ENST00000426426.1|TMEM233|ENSG00000224982.2|transmembrane protein 233
hg19_v2_chrX_-_19504642_19504642	0.0930676	GLI3	ENST00000469203.2|MAP3K15|ENSG00000180815.10|mitogen-activated protein kinase kinase kinase 15
hg19_v2_chr2_-_220435963_220436210	0.092925	GLI3	ENST00000373876.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000404537.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000603926.1|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000373873.4|OBSL1|ENSG00000124006.10|obscurin-like 1 	ENST00000289656.3|OBSL1|ENSG00000124006.10|obscurin-like 1
hg19_v2_chr22_-_30783356_30783415	0.0926789	GLI3	ENST00000382363.3|RNF215|ENSG00000099999.10|ring finger protein 215
hg19_v2_chr2_+_159825143_159825190	0.0922914	GLI3	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr18_+_52385068_52385114	0.0920253	GLI3	ENST00000586570.1|RAB27B|ENSG00000041353.5|RAB27B, member RAS oncogene family
hg19_v2_chrX_-_7895479_7895491	0.0918778	GLI3	ENST00000381042.4|PNPLA4|ENSG00000006757.7|patatin-like phospholipase domain containing 4
hg19_v2_chr19_-_40324255_40324296	0.0916998	GLI3	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr19_+_10216899_10217095	0.0915269	GLI3	ENST00000428358.1|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000253107.7|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000556468.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000393793.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr14_+_72052983_72053003	0.0914389	GLI3	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr17_+_66509019_66509074	0.0913888	GLI3	ENST00000585981.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha 	ENST00000589480.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha 	ENST00000585815.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chrX_+_115567767_115567790	0.0911218	GLI3	ENST00000371900.4|SLC6A14|ENSG00000087916.7|solute carrier family 6 (amino acid transporter), member 14
hg19_v2_chr17_+_5031687_5031687	0.0907475	GLI3	ENST00000250066.6|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene) 	ENST00000304328.5|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene)
hg19_v2_chr16_+_89894875_89894907	0.0904376	GLI3	ENST00000393062.2|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr1_+_44399347_44399444	0.0904083	GLI3	ENST00000477048.1|ARTN|ENSG00000117407.12|artemin 	ENST00000471394.2|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr9_+_126118449_126118539	0.0901946	GLI3	ENST00000359999.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila) 	ENST00000373631.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila)
hg19_v2_chr8_-_123139423_123139544	0.0901222	GLI3	ENST00000523792.1|RP11-398G24.2|ENSG00000254303.1|RP11-398G24.2
hg19_v2_chr16_-_75299845_75299883	0.0899417	GLI3	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr17_+_77030267_77030391	0.0899206	GLI3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr8_-_130587237_130587250	0.0898713	GLI3	ENST00000520048.1|CCDC26|ENSG00000229140.4|coiled-coil domain containing 26
hg19_v2_chr9_+_6758024_6758100	0.0897126	GLI3	ENST00000442236.2|KDM4C|ENSG00000107077.13|lysine (K)-specific demethylase 4C
hg19_v2_chr17_-_48785216_48785291	0.089528	GLI3	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr16_+_86612112_86612123	0.0882414	GLI3	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chr7_-_45026159_45026188	0.0881978	GLI3	ENST00000584327.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000438705.3|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chrX_-_134156502_134156577	0.0880168	GLI3	ENST00000391440.1|FAM127C|ENSG00000212747.3|family with sequence similarity 127, member C
hg19_v2_chr20_+_55043647_55043751	0.0879047	GLI3	ENST00000023939.4|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000395881.3|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000357348.5|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000449062.1|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1 	ENST00000435342.2|RTFDC1|ENSG00000022277.8|replication termination factor 2 domain containing 1
hg19_v2_chr16_+_84224740_84224746	0.0876085	GLI3	ENST00000268624.3|ADAD2|ENSG00000140955.6|adenosine deaminase domain containing 2
hg19_v2_chr6_+_34204642_34204664	0.0874138	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr16_+_67381263_67381284	0.0873499	GLI3	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr3_-_25824353_25824400	0.0871252	GLI3	ENST00000427041.1|NGLY1|ENSG00000151092.12|N-glycanase 1
hg19_v2_chr8_-_145652336_145652378	0.0868855	GLI3	ENST00000529182.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000526054.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr1_+_11866270_11866317	0.08685	GLI3	ENST00000376497.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376487.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376496.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr3_-_53925863_53926015	0.0867725	GLI3	ENST00000541726.1|SELK|ENSG00000113811.6|Selenoprotein K  	ENST00000495461.1|SELK|ENSG00000113811.6|Selenoprotein K
hg19_v2_chr12_-_31158902_31158938	0.0867013	GLI3	ENST00000544329.1|RP11-551L14.4|ENSG00000226472.3|RP11-551L14.4	ENST00000418254.2|RP11-551L14.4|ENSG00000226472.3|RP11-551L14.4	ENST00000222396.5|RP11-551L14.4|ENSG00000226472.3|RP11-551L14.4
hg19_v2_chr20_+_35974532_35974557	0.0864232	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chr4_-_48908737_48908799	0.0864143	GLI3	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr16_+_2880157_2880210	0.0861052	GLI3	ENST00000382280.3|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr22_+_39353527_39353623	0.0860808	GLI3	ENST00000249116.2|APOBEC3A|ENSG00000128383.8|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
hg19_v2_chr14_+_101293687_101293748	0.0858416	GLI3	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chrX_-_52683950_52683950	0.0853623	GLI3	ENST00000298181.5|SSX7|ENSG00000187754.8|synovial sarcoma, X breakpoint 7
hg19_v2_chr1_-_40254482_40254550	0.0853133	GLI3	ENST00000397360.2|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b 	ENST00000372827.3|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b
hg19_v2_chr11_+_117103333_117103419	0.0851642	GLI3	ENST00000534428.1|RNF214|ENSG00000167257.6|ring finger protein 214
hg19_v2_chr6_-_29600832_29600982	0.0850721	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr1_+_15480197_15480285	0.0847388	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr12_-_53171128_53171131	0.0847198	GLI3	ENST00000332411.2|KRT76|ENSG00000185069.2|keratin 76
hg19_v2_chr6_+_43457317_43457360	0.0846483	GLI3	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr6_+_170151887_170151902	0.084622	GLI3	ENST00000588451.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation
hg19_v2_chr16_+_88923494_88923576	0.0845935	GLI3	ENST00000567895.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000301021.3|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000565504.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000567312.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000568583.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000561840.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like
hg19_v2_chr17_+_79071365_79071401	0.0843594	GLI3	ENST00000576756.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2
hg19_v2_chr22_+_38349670_38349723	0.0842334	GLI3	ENST00000442738.2|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000460648.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000407936.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000488684.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000492213.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000606538.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000405557.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr15_-_90892669_90892669	0.0842324	GLI3	ENST00000412799.2|GABARAPL3|ENSG00000238244.2|GABA(A) receptors associated protein like 3, pseudogene
hg19_v2_chr16_-_18470696_18470696	0.0841024	GLI3	ENST00000427999.2|RP11-1212A22.4|ENSG00000233024.3|LOC339047 protein; Nuclear pore complex-interacting protein family member A3; Nuclear pore complex-interacting protein family member A5; Protein PKD1P1
hg19_v2_chr9_+_131218336_131218366	0.0837154	GLI3	ENST00000372814.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr11_-_59436453_59436530	0.0832534	GLI3	ENST00000300146.9|PATL1|ENSG00000166889.13|protein associated with topoisomerase II homolog 1 (yeast)
hg19_v2_chr21_+_45879814_45879814	0.0831827	GLI3	ENST00000596691.1|LRRC3DN|ENSG00000269430.1|LRRC3 downstream neighbor (non-protein coding)
hg19_v2_chr9_+_131873591_131873622	0.0830675	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr2_+_102928009_102928033	0.0830616	GLI3	ENST00000404917.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000447231.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr1_+_207669573_207669606	0.0829519	GLI3	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr3_+_100328433_100328459	0.0828801	GLI3	ENST00000273352.3|GPR128|ENSG00000144820.3|G protein-coupled receptor 128
hg19_v2_chr1_+_240255166_240255197	0.0828431	GLI3	ENST00000319653.9|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr1_+_25664408_25664408	0.0826695	GLI3	ENST00000374358.4|TMEM50A|ENSG00000183726.6|transmembrane protein 50A
hg19_v2_chr1_-_11865982_11866005	0.0825646	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr11_+_124735282_124735332	0.0824452	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr17_-_73905899_73905899	0.0823261	GLI3	ENST00000409963.3|MRPL38|ENSG00000204316.8|mitochondrial ribosomal protein L38
hg19_v2_chr19_+_49496782_49496873	0.0821453	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chr3_+_128997798_128997851	0.081873	GLI3	ENST00000502878.2|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000389735.3|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000509551.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific 	ENST00000511665.1|HMCES|ENSG00000183624.9|5-hydroxymethylcytosine (hmC) binding, ES cell-specific
hg19_v2_chr1_+_247670415_247670426	0.0816384	GLI3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr1_+_104197912_104197912	0.0814605	GLI3	ENST00000430659.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr8_-_135708787_135708805	0.0811754	GLI3	ENST00000520356.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520727.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520214.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000518191.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000429442.2|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing
hg19_v2_chr1_+_202995611_202995680	0.0811349	GLI3	ENST00000367240.2|PPFIA4|ENSG00000143847.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
hg19_v2_chr3_-_187009646_187009778	0.0810352	GLI3	ENST00000296280.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392470.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000169293.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000439271.1|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392472.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392475.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
hg19_v2_chr16_-_88717423_88717469	0.0809621	GLI3	ENST00000568278.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000569359.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000567174.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr1_-_209741018_209741127	0.0809375	GLI3	ENST00000424696.2|RP1-272L16.1|ENSG00000224260.2|RP1-272L16.1
hg19_v2_chr20_+_60698180_60698208	0.0805023	GLI3	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr12_+_122326630_122326646	0.0802158	GLI3	ENST00000541212.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000340175.5|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr1_-_31902614_31902614	0.0801967	GLI3	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr12_+_123464607_123464873	0.0801726	GLI3	ENST00000543566.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000315580.5|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000542099.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000392435.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000413381.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000426960.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000453766.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4
hg19_v2_chr17_+_76374714_76374759	0.0800959	GLI3	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr1_+_220701740_220701899	0.0799695	GLI3	ENST00000366917.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr17_+_17942594_17942606	0.0798798	GLI3	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr8_+_145133493_145133551	0.079872	GLI3	ENST00000316052.5|EXOSC4|ENSG00000178896.6|exosome component 4 	ENST00000525936.1|EXOSC4|ENSG00000178896.6|exosome component 4
hg19_v2_chr14_+_61788429_61788501	0.079697	GLI3	ENST00000332981.5|PRKCH|ENSG00000027075.9|protein kinase C, eta
hg19_v2_chr20_+_34894247_34894279	0.0795325	GLI3	ENST00000373913.3|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chr12_+_57854274_57854274	0.0793762	GLI3	ENST00000528432.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr9_+_109694914_109694927	0.0793098	GLI3	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr14_-_74959994_74960020	0.0793013	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr17_-_1419878_1419912	0.0789226	GLI3	ENST00000449479.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000477910.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000542125.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000575172.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr2_-_180726232_180726275	0.0789216	GLI3	ENST00000410066.1|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr5_-_146833222_146833261	0.078775	GLI3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr15_+_42867857_42867884	0.0787176	GLI3	ENST00000290607.7|STARD9|ENSG00000159433.7|StAR-related lipid transfer (START) domain containing 9
hg19_v2_chr22_+_46663861_46663886	0.0786558	GLI3	ENST00000381031.3|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38 	ENST00000445282.2|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38
hg19_v2_chr11_+_46403194_46403242	0.0786135	GLI3	ENST00000395569.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395566.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr9_-_134406565_134406608	0.0786053	GLI3	ENST00000372210.3|UCK1|ENSG00000130717.8|uridine-cytidine kinase 1 	ENST00000372211.3|UCK1|ENSG00000130717.8|uridine-cytidine kinase 1
hg19_v2_chr17_+_75123947_75123964	0.0782856	GLI3	ENST00000586429.1|SEC14L1|ENSG00000129657.10|SEC14-like 1 (S. cerevisiae)
hg19_v2_chr19_+_35417939_35417963	0.0782622	GLI3	ENST00000601142.1|ZNF30|ENSG00000168661.10|zinc finger protein 30 	ENST00000426813.2|ZNF30|ENSG00000168661.10|zinc finger protein 30
hg19_v2_chr11_+_64216546_64216546	0.077902	GLI3	ENST00000316124.2|AP003774.4|ENSG00000181908.4|HCG1652096, isoform CRA_a; Uncharacterized protein; cDNA FLJ37045 fis, clone BRACE2012185
hg19_v2_chr7_+_142960505_142960553	0.0776745	GLI3	ENST00000409500.3|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1 	ENST00000443571.2|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1 	ENST00000358406.5|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1 	ENST00000479303.1|GSTK1|ENSG00000197448.9|glutathione S-transferase kappa 1
hg19_v2_chr21_-_28215332_28215347	0.0775715	GLI3	ENST00000517777.1|ADAMTS1|ENSG00000154734.10|ADAM metallopeptidase with thrombospondin type 1 motif, 1
hg19_v2_chr16_-_70729496_70729555	0.0771775	GLI3	ENST00000567648.1|VAC14|ENSG00000103043.10|Vac14 homolog (S. cerevisiae)
hg19_v2_chr10_+_27444268_27444301	0.0771363	GLI3	ENST00000375940.4|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like 	ENST00000342386.6|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like
hg19_v2_chr16_-_22012419_22012452	0.0771109	GLI3	ENST00000537222.2|PDZD9|ENSG00000155714.9|PDZ domain containing 9 	ENST00000424898.2|PDZD9|ENSG00000155714.9|PDZ domain containing 9 	ENST00000286143.6|PDZD9|ENSG00000155714.9|PDZ domain containing 9
hg19_v2_chr11_+_120973375_120973375	0.0770986	GLI3	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr14_+_78870030_78870098	0.0770255	GLI3	ENST00000553631.1|NRXN3|ENSG00000021645.13|neurexin 3 	ENST00000554719.1|NRXN3|ENSG00000021645.13|neurexin 3
hg19_v2_chr20_-_6104191_6104228	0.0769086	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr7_-_91808845_91808845	0.07681	GLI3	ENST00000343318.5|LRRD1|ENSG00000240720.3|leucine-rich repeats and death domain containing 1
hg19_v2_chr14_-_36990061_36990154	0.0766557	GLI3	ENST00000546983.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr17_+_72270380_72270420	0.076637	GLI3	ENST00000582036.1|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2 	ENST00000307504.5|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2
hg19_v2_chr19_-_2090131_2090175	0.0766328	GLI3	ENST00000591326.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr10_-_79398250_79398353	0.0766083	GLI3	ENST00000286627.5|KCNMA1|ENSG00000156113.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
hg19_v2_chr8_-_29120604_29120633	0.0764241	GLI3	ENST00000521515.1|KIF13B|ENSG00000197892.8|kinesin family member 13B
hg19_v2_chr17_+_61554413_61554434	0.0762892	GLI3	ENST00000538928.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000290866.4|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000428043.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme
hg19_v2_chr2_-_68694390_68694434	0.0762145	GLI3	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chrX_-_52736211_52736239	0.0761942	GLI3	ENST00000336777.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2 	ENST00000337502.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2
hg19_v2_chr5_-_9546180_9546195	0.0759344	GLI3	ENST00000382496.5|SEMA5A|ENSG00000112902.7|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
hg19_v2_chr19_+_17638059_17638113	0.0753022	GLI3	ENST00000599164.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C 	ENST00000449408.2|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C 	ENST00000600871.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C 	ENST00000599124.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C
hg19_v2_chr16_+_9185450_9185516	0.0752819	GLI3	ENST00000327827.7|C16orf72|ENSG00000182831.7|chromosome 16 open reading frame 72
hg19_v2_chr17_+_7531281_7531320	0.075218	GLI3	ENST00000575729.1|SHBG|ENSG00000129214.10|sex hormone-binding globulin 	ENST00000340624.5|SHBG|ENSG00000129214.10|sex hormone-binding globulin
hg19_v2_chr4_-_159593179_159593220	0.0752063	GLI3	ENST00000379205.4|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr9_+_87285539_87285575	0.0750815	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr16_-_2318373_2318414	0.0748137	GLI3	ENST00000566458.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000320225.5|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr17_-_7145106_7145172	0.0745736	GLI3	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr1_+_204839959_204839996	0.074565	GLI3	ENST00000404076.1|NFASC|ENSG00000163531.11|neurofascin
hg19_v2_chr10_-_81965307_81965351	0.0743649	GLI3	ENST00000537102.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000372231.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000438331.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000422982.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000360615.4|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000265447.4|ANXA11|ENSG00000122359.13|annexin A11
hg19_v2_chr1_+_3385085_3385108	0.0743331	GLI3	ENST00000445297.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chr2_-_95787738_95787763	0.0741692	GLI3	ENST00000272418.2|MRPS5|ENSG00000144029.7|mitochondrial ribosomal protein S5
hg19_v2_chr15_-_43212836_43212991	0.0740575	GLI3	ENST00000566931.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000564431.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000567274.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr3_+_11314072_11314098	0.0739172	GLI3	ENST00000444619.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr19_+_44100632_44100683	0.0737292	GLI3	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr14_+_21423611_21423665	0.0735154	GLI3	ENST00000304625.2|RNASE2|ENSG00000169385.2|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)
hg19_v2_chr11_-_46615498_46615675	0.0734828	GLI3	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr6_-_3752222_3752260	0.0733859	GLI3	ENST00000380283.4|PXDC1|ENSG00000168994.9|PX domain containing 1
hg19_v2_chr1_+_167691185_167691188	0.0733183	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr10_-_72648541_72648541	0.0732526	GLI3	ENST00000299299.3|PCBD1|ENSG00000166228.4|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha
hg19_v2_chr1_-_35450897_35450954	0.0732386	GLI3	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr16_-_88923285_88923388	0.0732338	GLI3	ENST00000542788.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000569433.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000268695.5|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000568311.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase
hg19_v2_chr3_-_38992052_38992052	0.0731124	GLI3	ENST00000302328.3|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000450244.1|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000444237.2|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit
hg19_v2_chr22_+_20905422_20905577	0.0729697	GLI3	ENST00000424287.1|MED15|ENSG00000099917.13|mediator complex subunit 15 	ENST00000423862.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr19_+_35820064_35820115	0.0728567	GLI3	ENST00000341773.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600131.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000270311.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000595780.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000597916.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000593867.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600424.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000599811.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000536635.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000085219.5|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000544992.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000419549.2|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chrX_+_15525426_15525441	0.0727375	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr1_+_209941942_209941964	0.0724858	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr11_-_46142615_46142729	0.0724849	GLI3	ENST00000529734.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000323180.6|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr15_+_31658349_31658358	0.0722776	GLI3	ENST00000558844.1|KLF13|ENSG00000169926.5|Kruppel-like factor 13
hg19_v2_chr12_+_48166978_48167047	0.0721126	GLI3	ENST00000442218.2|SLC48A1|ENSG00000211584.9|solute carrier family 48 (heme transporter), member 1
hg19_v2_chr21_-_27107283_27107338	0.0717232	GLI3	ENST00000284971.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400099.1|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr10_-_116164450_116164515	0.0716389	GLI3	ENST00000369271.3|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chrX_-_40506766_40506824	0.0715833	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000440784.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000327877.5|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378426.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378418.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38
hg19_v2_chr20_-_50722183_50722217	0.0714103	GLI3	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr16_-_55867146_55867249	0.0712004	GLI3	ENST00000422046.2|CES1|ENSG00000198848.8|carboxylesterase 1
hg19_v2_chr22_+_21213771_21213788	0.0711807	GLI3	ENST00000439214.1|SNAP29|ENSG00000099940.7|synaptosomal-associated protein, 29kDa
hg19_v2_chr19_-_55549624_55549639	0.0709998	GLI3	ENST00000417454.1|GP6|ENSG00000088053.7|glycoprotein VI (platelet) 	ENST00000310373.3|GP6|ENSG00000088053.7|glycoprotein VI (platelet) 	ENST00000333884.2|GP6|ENSG00000088053.7|glycoprotein VI (platelet)
hg19_v2_chr19_+_41281416_41281452	0.0709749	GLI3	ENST00000597140.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr12_+_120933904_120933923	0.070949	GLI3	ENST00000550178.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000550845.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549989.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000552870.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr21_-_46340884_46341048	0.0707125	GLI3	ENST00000302347.5|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000517819.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr5_+_80597419_80597448	0.0707032	GLI3	ENST00000254037.2|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9 	ENST00000407610.3|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9 	ENST00000380199.5|ZCCHC9|ENSG00000131732.7|zinc finger, CCHC domain containing 9
hg19_v2_chr19_-_2096478_2096672	0.0702583	GLI3	ENST00000591236.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A 	ENST00000589902.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr20_+_3776936_3776964	0.0702109	GLI3	ENST00000439880.2|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr1_-_1051736_1051754	0.06948	GLI3	ENST00000448924.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000294576.5|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000437760.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000462097.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000475119.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr1_-_228604544_228604568	0.0694406	GLI3	ENST00000457345.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr17_-_80009209_80009449	0.0693463	GLI3	ENST00000429557.3|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 	ENST00000578356.1|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chrX_-_134186144_134186228	0.0693194	GLI3	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr17_-_79633590_79633678	0.0692454	GLI3	ENST00000374741.3|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1 	ENST00000571503.1|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1
hg19_v2_chr12_-_10766184_10766222	0.0691125	GLI3	ENST00000539554.1|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000381881.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000320756.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila)
hg19_v2_chr7_-_2595337_2595361	0.0691072	GLI3	ENST00000340611.4|BRAT1|ENSG00000106009.11|BRCA1-associated ATM activator 1
hg19_v2_chr2_-_85839146_85839198	0.0690892	GLI3	ENST00000306336.5|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68 	ENST00000409734.3|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68
hg19_v2_chr1_+_9005917_9005946	0.0690745	GLI3	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr16_+_89988259_89988354	0.0690601	GLI3	ENST00000554444.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000556565.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr19_+_17186577_17186637	0.0690308	GLI3	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chr16_+_4526341_4526460	0.0689872	GLI3	ENST00000458134.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000219700.6|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000575120.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000572812.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000574466.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000576827.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000570445.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr1_-_104239302_104239302	0.0689543	GLI3	ENST00000446703.1|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr22_+_40742512_40742543	0.0686615	GLI3	ENST00000454266.2|ADSL|ENSG00000239900.7|adenylosuccinate lyase 	ENST00000342312.6|ADSL|ENSG00000239900.7|adenylosuccinate lyase
hg19_v2_chr12_-_117537240_117537274	0.0685837	GLI3	ENST00000392545.4|TESC|ENSG00000088992.13|tescalcin 	ENST00000541210.1|TESC|ENSG00000088992.13|tescalcin 	ENST00000335209.7|TESC|ENSG00000088992.13|tescalcin
hg19_v2_chr22_+_46663895_46663937	0.0684179	GLI3	ENST00000421359.1|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38
hg19_v2_chr1_+_2043086_2043109	0.0683885	GLI3	ENST00000470986.1|PRKCZ|ENSG00000067606.11|protein kinase C, zeta
hg19_v2_chr2_+_264913_264964	0.0682611	GLI3	ENST00000439645.2|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000405233.1|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr12_-_50101165_50101259	0.0681517	GLI3	ENST00000352151.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000335154.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000293590.5|FMNL3|ENSG00000161791.9|formin-like 3
hg19_v2_chr12_-_118541743_118541777	0.0681303	GLI3	ENST00000359236.5|VSIG10|ENSG00000176834.9|V-set and immunoglobulin domain containing 10
hg19_v2_chr11_+_1093318_1093345	0.0680676	GLI3	ENST00000333592.6|MUC2|ENSG00000198788.7|mucin 2, oligomeric mucus/gel-forming
hg19_v2_chr1_+_1550795_1550927	0.0680566	GLI3	ENST00000520777.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000357210.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000360522.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000378710.3|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000355826.5|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000518681.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000505820.2|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr11_-_1629693_1629693	0.0679697	GLI3	ENST00000399685.1|KRTAP5-3|ENSG00000196224.7|keratin associated protein 5-3
hg19_v2_chr6_+_24775641_24775710	0.067882	GLI3	ENST00000378054.2|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor 	ENST00000476555.1|GMNN|ENSG00000112312.5|geminin, DNA replication inhibitor
hg19_v2_chr14_+_104689918_104689951	0.0678757	GLI3	ENST00000553757.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2	ENST00000556528.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2	ENST00000555282.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2
hg19_v2_chr19_-_49552006_49552006	0.0678491	GLI3	ENST00000391869.3|CGB1|ENSG00000267631.3|chorionic gonadotropin, beta polypeptide 1
hg19_v2_chr16_+_89894911_89894955	0.0678424	GLI3	ENST00000378247.3|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2 	ENST00000563972.1|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr12_+_1800179_1800250	0.0678131	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr7_+_1126461_1126512	0.0677372	GLI3	ENST00000297469.3|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr22_+_31892373_31892556	0.0675554	GLI3	ENST00000443011.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400289.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000444859.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400288.2|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr4_-_185395672_185395734	0.0674366	GLI3	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr11_+_10477733_10477831	0.0674114	GLI3	ENST00000528723.1|AMPD3|ENSG00000133805.11|adenosine monophosphate deaminase 3
hg19_v2_chr17_-_7760457_7760587	0.0670593	GLI3	ENST00000576384.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_+_55795493_55795534	0.0668823	GLI3	ENST00000309383.1|BRSK1|ENSG00000160469.12|BR serine/threonine kinase 1
hg19_v2_chr19_-_16284286_16284336	0.0666632	GLI3	ENST00000379859.3|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3 	ENST00000269878.4|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3
hg19_v2_chr12_+_122326662_122326768	0.0665204	GLI3	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr17_-_7307358_7307456	0.0664543	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chr22_+_31892261_31892278	0.0664096	GLI3	ENST00000432498.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000540643.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000443326.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000414585.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr1_-_110155671_110155685	0.0661699	GLI3	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chrX_-_11369656_11369801	0.0661507	GLI3	ENST00000413512.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr19_-_54693146_54693249	0.0655033	GLI3	ENST00000414665.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7 	ENST00000453320.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr2_+_85839218_85839255	0.0654292	GLI3	ENST00000448971.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000442708.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000450066.2|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39
hg19_v2_chr16_+_4606347_4606491	0.0653622	GLI3	ENST00000444310.4|C16orf96|ENSG00000205832.7|chromosome 16 open reading frame 96
hg19_v2_chr20_+_57466461_57466482	0.0652213	GLI3	ENST00000306090.10|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr8_-_145653885_145653937	0.0651846	GLI3	ENST00000531032.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000292510.4|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000377348.2|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000530790.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000533806.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr15_-_90456114_90456151	0.064886	GLI3	ENST00000398333.3|C15orf38-AP3S2|ENSG00000250021.3|C15orf38-AP3S2 readthrough
hg19_v2_chr8_+_144328991_144329280	0.0647722	GLI3	ENST00000520584.1|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000330701.4|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000522452.1|ZFP41|ENSG00000264668.1|ZFP41
hg19_v2_chr17_-_37557846_37557920	0.0644971	GLI3	ENST00000394294.3|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000583610.1|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000264658.6|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20
hg19_v2_chr20_+_42143136_42143166	0.0644448	GLI3	ENST00000373134.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chr7_+_1126437_1126458	0.0642799	GLI3	ENST00000413368.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1 	ENST00000397092.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chrX_-_49460578_49460597	0.0642393	GLI3	ENST00000376150.3|PAGE1|ENSG00000068985.4|P antigen family, member 1 (prostate associated)
hg19_v2_chr9_+_131873659_131873714	0.0641711	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr11_-_65640071_65640125	0.0641018	GLI3	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr1_+_36396313_36396356	0.0640083	GLI3	ENST00000324350.5|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr11_+_64001962_64002033	0.0638994	GLI3	ENST00000309422.2|VEGFB|ENSG00000173511.5|vascular endothelial growth factor B
hg19_v2_chr19_+_57791806_57791875	0.0638836	GLI3	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr17_+_46018872_46019006	0.0638762	GLI3	ENST00000583599.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000434554.2|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000225573.4|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000544840.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000534893.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase
hg19_v2_chr20_-_25207370_25207370	0.0638335	GLI3	ENST00000593352.1|AL035252.1|ENSG00000268302.1|HCG2018895; Uncharacterized protein
hg19_v2_chr15_-_50838888_50838896	0.063798	GLI3	ENST00000532404.1|USP50|ENSG00000170236.10|ubiquitin specific peptidase 50
hg19_v2_chr22_+_25003626_25003645	0.0637643	GLI3	ENST00000451366.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000406383.2|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000428855.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr14_+_23776167_23776189	0.0636552	GLI3	ENST00000554635.1|BCL2L2|ENSG00000129473.5|BCL2-like 2 	ENST00000557008.1|BCL2L2-PABPN1|ENSG00000258643.1|BCL2L2-PABPN1 readthrough
hg19_v2_chrX_+_153626571_153626627	0.0635702	GLI3	ENST00000424325.2|RPL10|ENSG00000147403.12|ribosomal protein L10
hg19_v2_chr17_+_40172097_40172175	0.0630381	GLI3	ENST00000393880.1|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000393881.3|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000462043.2|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000449471.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000316082.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2
hg19_v2_chr5_-_180242576_180242585	0.062942	GLI3	ENST00000514438.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr1_-_6052463_6052542	0.0628855	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr9_+_79634571_79634571	0.0628461	GLI3	ENST00000376708.1|FOXB2|ENSG00000204612.1|forkhead box B2
hg19_v2_chr14_+_104095514_104095634	0.0628031	GLI3	ENST00000348520.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000380038.3|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000389744.4|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557575.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000553286.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000347839.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000555836.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000334553.6|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000246489.7|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000557450.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000452929.2|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000554280.1|KLC1|ENSG00000126214.16|kinesin light chain 1 	ENST00000445352.4|KLC1|ENSG00000126214.16|kinesin light chain 1
hg19_v2_chr7_-_99764853_99764886	0.0627392	GLI3	ENST00000411994.1|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4 	ENST00000426974.2|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4
hg19_v2_chr20_+_39765581_39765646	0.0626985	GLI3	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr9_-_132404374_132404450	0.0626499	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr10_+_134145735_134145783	0.0626037	GLI3	ENST00000368613.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chrX_+_52780318_52780346	0.0624655	GLI3	ENST00000375515.3|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B 	ENST00000276049.6|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B
hg19_v2_chr7_+_150688083_150688106	0.0623541	GLI3	ENST00000297494.3|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr6_-_166582107_166582188	0.0623435	GLI3	ENST00000296946.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000461348.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000366871.3|T|ENSG00000164458.5|T, brachyury homolog (mouse)
hg19_v2_chr16_-_75299884_75299919	0.0619904	GLI3	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr4_+_77172847_77172897	0.0619198	GLI3	ENST00000515604.1|FAM47E|ENSG00000272414.1|uncharacterized protein LOC100631383  	ENST00000539752.1|FAM47E-STBD1|ENSG00000118804.7|FAM47E-STBD1 readthrough 	ENST00000424749.2|FAM47E|ENSG00000189157.9|family with sequence similarity 47, member E
hg19_v2_chr15_+_74421961_74422007	0.0617861	GLI3	ENST00000565159.1|ISLR2|ENSG00000167178.11|immunoglobulin superfamily containing leucine-rich repeat 2 	ENST00000567206.1|ISLR2|ENSG00000167178.11|immunoglobulin superfamily containing leucine-rich repeat 2
hg19_v2_chr12_+_31227192_31227211	0.0617784	GLI3	ENST00000535317.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr6_-_110736742_110736782	0.0617059	GLI3	ENST00000368924.3|DDO|ENSG00000203797.5|D-aspartate oxidase 	ENST00000368923.3|DDO|ENSG00000203797.5|D-aspartate oxidase
hg19_v2_chr22_+_45714672_45714710	0.0615645	GLI3	ENST00000424557.1|FAM118A|ENSG00000100376.7|family with sequence similarity 118, member A
hg19_v2_chr17_-_27224621_27224759	0.0615317	GLI3	ENST00000394906.2|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000585169.1|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000394908.4|FLOT2|ENSG00000132589.11|flotillin 2
hg19_v2_chr10_+_11059826_11059932	0.0611491	GLI3	ENST00000450189.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr2_+_232573208_232573219	0.0611254	GLI3	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr11_-_88070896_88070917	0.061121	GLI3	ENST00000529974.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000527018.1|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr1_-_230991747_230991782	0.061072	GLI3	ENST00000523410.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr17_+_36873677_36873800	0.0609998	GLI3	ENST00000471200.1|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr6_-_33679452_33679528	0.0608845	GLI3	ENST00000374231.4|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000607484.1|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENST00000374214.3|UQCC2|ENSG00000137288.5|ubiquinol-cytochrome c reductase complex assembly factor 2
hg19_v2_chr5_-_39270725_39270771	0.060836	GLI3	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr19_-_54746600_54746649	0.0608253	GLI3	ENST00000245621.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000407860.2|LILRB3|ENSG00000204577.7|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 	ENST00000270464.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000419410.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000391735.3|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000396365.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000440558.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
hg19_v2_chr17_-_39968855_39968880	0.0608032	GLI3	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr19_+_7745708_7745765	0.0607249	GLI3	ENST00000596148.1|TRAPPC5|ENSG00000181029.7|trafficking protein particle complex 5 	ENST00000317378.5|TRAPPC5|ENSG00000181029.7|trafficking protein particle complex 5 	ENST00000426877.2|TRAPPC5|ENSG00000181029.7|trafficking protein particle complex 5
hg19_v2_chr11_-_61684962_61685063	0.060696	GLI3	ENST00000394836.2|RAB3IL1|ENSG00000167994.7|RAB3A interacting protein (rabin3)-like 1
hg19_v2_chr12_+_53689309_53689366	0.0606149	GLI3	ENST00000351500.3|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000550846.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000334478.4|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000549759.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5
hg19_v2_chr12_-_54978086_54978100	0.0602997	GLI3	ENST00000553113.1|PPP1R1A|ENSG00000135447.12|protein phosphatase 1, regulatory (inhibitor) subunit 1A
hg19_v2_chr12_-_82152444_82152475	0.0602559	GLI3	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr8_+_1922024_1922069	0.0600068	GLI3	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr22_-_42765174_42765282	0.0598671	GLI3	ENST00000432473.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000412060.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000424852.1|Z83851.1|ENSG00000229891.1|Z83851.1
hg19_v2_chr7_+_44240520_44240652	0.0598609	GLI3	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr14_+_103566665_103566665	0.0596647	GLI3	ENST00000559116.1|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr21_+_47540424_47540474	0.0595269	GLI3	ENST00000413758.1|COL6A2|ENSG00000142173.10|collagen, type VI, alpha 2
hg19_v2_chr17_-_79827808_79827882	0.059478	GLI3	ENST00000580685.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr1_+_36690011_36690092	0.0593455	GLI3	ENST00000354618.5|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000469141.2|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000478853.1|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3
hg19_v2_chr20_+_48599506_48599536	0.0591653	GLI3	ENST00000244050.2|SNAI1|ENSG00000124216.3|snail family zinc finger 1
hg19_v2_chr2_+_242498135_242498136	0.059016	GLI3	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr14_+_74058410_74058410	0.0587372	GLI3	ENST00000326303.4|ACOT4|ENSG00000177465.4|acyl-CoA thioesterase 4
hg19_v2_chrX_-_8769378_8769424	0.0582336	GLI3	ENST00000543214.1|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A 	ENST00000381003.3|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A
hg19_v2_chr16_-_30064244_30064299	0.0582133	GLI3	ENST00000571269.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B 	ENST00000561666.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B
hg19_v2_chr10_-_28571015_28571067	0.0576704	GLI3	ENST00000375719.3|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 	ENST00000375732.1|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr19_+_38893751_38893799	0.0576065	GLI3	ENST00000588262.1|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C 	ENST00000252530.5|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C 	ENST00000343358.7|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C
hg19_v2_chr10_+_105156364_105156448	0.0575678	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chr18_-_44556449_44556449	0.0575141	GLI3	ENST00000330682.2|TCEB3C|ENSG00000183791.4|transcription elongation factor B polypeptide 3C (elongin A3)
hg19_v2_chr11_-_12030681_12030692	0.0572776	GLI3	ENST00000529338.1|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3
hg19_v2_chr7_+_102290772_102290772	0.057195	GLI3	ENST00000507450.1|SPDYE2B|ENSG00000173678.10|speedy/RINGO cell cycle regulator family member E2B
hg19_v2_chr19_+_44100727_44100804	0.0570553	GLI3	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr6_+_163148973_163149044	0.0570237	GLI3	ENST00000366888.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr11_+_64052944_64052986	0.057012	GLI3	ENST00000535675.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137 	ENST00000543383.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr2_-_26205550_26205624	0.0569876	GLI3	ENST00000405914.1|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chrX_-_47518527_47518587	0.0569772	GLI3	ENST00000333119.3|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr17_-_46692287_46692317	0.0568876	GLI3	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr19_-_344786_344826	0.0567536	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr22_+_41487711_41487798	0.0567199	GLI3	ENST00000263253.7|EP300|ENSG00000100393.9|E1A binding protein p300
hg19_v2_chr16_-_89043377_89043406	0.0566105	GLI3	ENST00000436887.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000448839.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000360302.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr21_-_46330545_46330741	0.0565064	GLI3	ENST00000320216.6|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397852.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr19_+_708910_708975	0.0564638	GLI3	ENST00000264560.7|PALM|ENSG00000099864.13|paralemmin
hg19_v2_chr17_-_71258491_71258491	0.0563062	GLI3	ENST00000397671.1|CPSF4L|ENSG00000187959.5|cleavage and polyadenylation specific factor 4-like
hg19_v2_chr16_-_75300679_75300808	0.056272	GLI3	ENST00000420641.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr14_+_77564701_77564712	0.0562499	GLI3	ENST00000557115.1|KIAA1737|ENSG00000198894.3|CLOCK-interacting pacemaker
hg19_v2_chrX_-_108976521_108976632	0.0561009	GLI3	ENST00000469796.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000502391.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000508092.1|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000340800.2|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4 	ENST00000348502.6|ACSL4|ENSG00000068366.15|acyl-CoA synthetase long-chain family member 4
hg19_v2_chr1_+_40505891_40505995	0.0559356	GLI3	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chr5_-_132113063_132113082	0.0558358	GLI3	ENST00000378719.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr19_-_21512115_21512138	0.0553353	GLI3	ENST00000601295.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr1_-_62785054_62785125	0.0552705	GLI3	ENST00000371153.4|KANK4|ENSG00000132854.14|KN motif and ankyrin repeat domains 4
hg19_v2_chr8_-_38008783_38008783	0.0552324	GLI3	ENST00000276449.4|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
hg19_v2_chr20_-_33880204_33880234	0.0550323	GLI3	ENST00000374408.3|FAM83C|ENSG00000125998.7|family with sequence similarity 83, member C
hg19_v2_chr4_-_111119804_111119832	0.0550087	GLI3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr19_+_8943074_8943074	0.0549337	GLI3	ENST00000595891.1|MBD3L1|ENSG00000170948.3|methyl-CpG binding domain protein 3-like 1
hg19_v2_chr16_+_2820912_2821032	0.0549306	GLI3	ENST00000570539.1|SRRM2|ENSG00000167978.12|serine/arginine repetitive matrix 2
hg19_v2_chr4_-_48908805_48908821	0.054639	GLI3	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr20_-_39946237_39946356	0.0544667	GLI3	ENST00000441102.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000559234.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr11_+_65029421_65029459	0.0541385	GLI3	ENST00000541089.1|POLA2|ENSG00000014138.4|polymerase (DNA directed), alpha 2, accessory subunit
hg19_v2_chr3_+_136537911_136538003	0.0540571	GLI3	ENST00000393079.3|SLC35G2|ENSG00000168917.8|solute carrier family 35, member G2
hg19_v2_chr15_+_49462434_49462488	0.0540367	GLI3	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr15_-_74421477_74421619	0.0540163	GLI3	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr5_+_140044261_140044464	0.0540046	GLI3	ENST00000358337.5|WDR55|ENSG00000120314.14|WD repeat domain 55
hg19_v2_chr20_+_57466357_57466419	0.0538078	GLI3	ENST00000371095.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000371085.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000354359.7|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000265620.7|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr12_-_108714412_108714446	0.0537886	GLI3	ENST00000412676.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1 	ENST00000550573.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1
hg19_v2_chr20_-_62587735_62587777	0.0537508	GLI3	ENST00000354216.6|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000369892.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000358711.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1
hg19_v2_chr12_+_106994905_106994954	0.053729	GLI3	ENST00000357881.4|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr7_+_75831181_75831236	0.0534685	GLI3	ENST00000388802.4|SRRM3|ENSG00000177679.14|serine/arginine repetitive matrix 3 	ENST00000326382.8|SRRM3|ENSG00000177679.14|serine/arginine repetitive matrix 3
hg19_v2_chr19_-_43709817_43709926	0.053465	GLI3	ENST00000433626.2|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4 	ENST00000405312.3|PSG4|ENSG00000243137.3|pregnancy specific beta-1-glycoprotein 4
hg19_v2_chr3_-_47517302_47517451	0.0533948	GLI3	ENST00000441517.2|SCAP|ENSG00000114650.14|SREBF chaperone 	ENST00000545718.1|SCAP|ENSG00000114650.14|SREBF chaperone
hg19_v2_chr6_-_30815936_30816035	0.0533612	GLI3	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr12_-_52867569_52867598	0.053278	GLI3	ENST00000252250.6|KRT6C|ENSG00000170465.9|keratin 6C
hg19_v2_chr1_-_46664074_46664126	0.0532505	GLI3	ENST00000371986.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 	ENST00000371984.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
hg19_v2_chr10_+_38717074_38717074	0.053236	GLI3	ENST00000423687.1|LINC00999|ENSG00000225119.3|long intergenic non-protein coding RNA 999
hg19_v2_chrX_-_130037162_130037190	0.053072	GLI3	ENST00000432489.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr10_+_124134201_124134350	0.0529824	GLI3	ENST00000368990.3|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368988.1|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368989.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000463663.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
hg19_v2_chr19_-_49015050_49015111	0.0528075	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chr4_-_6692246_6692274	0.052804	GLI3	ENST00000499502.2|RP11-539L10.2|ENSG00000246526.2|RP11-539L10.2
hg19_v2_chr3_+_157823609_157823667	0.0527149	GLI3	ENST00000480820.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1
hg19_v2_chr11_-_88070920_88070955	0.0526744	GLI3	ENST00000524463.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000227266.5|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr6_-_167040693_167040725	0.0526058	GLI3	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr19_+_54705025_54705034	0.0525945	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr11_+_64937625_64937707	0.0523604	GLI3	ENST00000377185.2|SPDYC|ENSG00000204710.2|speedy/RINGO cell cycle regulator family member C
hg19_v2_chr12_+_7055631_7055748	0.052257	GLI3	ENST00000543115.1|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6 	ENST00000399448.1|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6
hg19_v2_chr3_-_196756646_196756725	0.0522429	GLI3	ENST00000439320.1|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296351.4|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 	ENST00000296350.5|MFI2|ENSG00000163975.7|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
hg19_v2_chr4_+_9212383_9212383	0.0522312	GLI3	ENST00000421288.2|USP17L13|ENSG00000232399.2|ubiquitin specific peptidase 17-like family member 13 	ENST00000417945.1|USP17L10|ENSG00000231396.1|ubiquitin specific peptidase 17-like family member 10
hg19_v2_chr2_+_25015968_25016029	0.0522246	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr3_+_184081175_184081208	0.0521502	GLI3	ENST00000452961.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H 	ENST00000296223.3|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr1_-_22215192_22215216	0.0520941	GLI3	ENST00000374673.3|HSPG2|ENSG00000142798.12|heparan sulfate proteoglycan 2
hg19_v2_chr10_-_126847276_126847294	0.0520318	GLI3	ENST00000531469.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr1_+_28655505_28655629	0.0518942	GLI3	ENST00000373842.4|MED18|ENSG00000130772.9|mediator complex subunit 18 	ENST00000398997.2|MED18|ENSG00000130772.9|mediator complex subunit 18
hg19_v2_chr22_-_18507279_18507364	0.0518413	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr1_-_85358850_85358906	0.051707	GLI3	ENST00000370611.3|LPAR3|ENSG00000171517.5|lysophosphatidic acid receptor 3
hg19_v2_chr10_+_88414298_88414314	0.0515874	GLI3	ENST00000372071.2|OPN4|ENSG00000122375.7|opsin 4
hg19_v2_chr2_-_220436248_220436282	0.0515389	GLI3	ENST00000265318.4|OBSL1|ENSG00000124006.10|obscurin-like 1
hg19_v2_chr5_+_10250328_10250362	0.0514626	GLI3	ENST00000515390.1|CCT5|ENSG00000150753.7|chaperonin containing TCP1, subunit 5 (epsilon)
hg19_v2_chr22_-_24322660_24322660	0.0514126	GLI3	ENST00000404092.1|DDT|ENSG00000099977.9|D-dopachrome tautomerase
hg19_v2_chr3_+_4535025_4535040	0.0511989	GLI3	ENST00000302640.8|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000354582.6|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000423119.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000357086.4|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000456211.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr1_+_36396791_36396878	0.051	GLI3	ENST00000246314.6|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr1_+_44679159_44679189	0.0509275	GLI3	ENST00000315913.5|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1 	ENST00000372289.2|DMAP1|ENSG00000178028.9|DNA methyltransferase 1 associated protein 1
hg19_v2_chr20_-_49253425_49253427	0.0508944	GLI3	ENST00000045083.2|FAM65C|ENSG00000042062.7|family with sequence similarity 65, member C
hg19_v2_chr14_-_106622419_106622419	0.0507715	GLI3	ENST00000390604.2|IGHV3-16|ENSG00000211944.2|immunoglobulin heavy variable 3-16 (non-functional)
hg19_v2_chr4_-_7069760_7069924	0.0507576	GLI3	ENST00000264954.4|GRPEL1|ENSG00000109519.8|GrpE-like 1, mitochondrial (E. coli)
hg19_v2_chr4_+_79567314_79567348	0.0504093	GLI3	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr12_-_51785083_51785093	0.049987	GLI3	ENST00000603563.1|GALNT6|ENSG00000139629.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
hg19_v2_chrX_+_16185836_16185836	0.049819	GLI3	ENST00000400003.1|MAGEB17|ENSG00000182798.6|melanoma antigen family B, 17
hg19_v2_chrX_-_23761317_23761419	0.0497153	GLI3	ENST00000492081.1|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000379303.5|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9 	ENST00000336430.7|ACOT9|ENSG00000123130.12|acyl-CoA thioesterase 9
hg19_v2_chr7_+_23338819_23338973	0.0496921	GLI3	ENST00000466681.1|MALSU1|ENSG00000156928.4|mitochondrial assembly of ribosomal large subunit 1
hg19_v2_chr9_+_131219250_131219275	0.0493554	GLI3	ENST00000470061.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr20_-_1165117_1165117	0.049096	GLI3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr11_-_2170786_2170833	0.0490636	GLI3	ENST00000300632.5|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr9_+_87285257_87285311	0.0489056	GLI3	ENST00000323115.4|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr9_+_131219179_131219198	0.0488256	GLI3	ENST00000372791.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr14_-_101053739_101053767	0.0484166	GLI3	ENST00000554140.1|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr9_+_132962843_132962872	0.0482905	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr11_-_65374430_65374497	0.0481609	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr17_-_26989136_26989218	0.0479161	GLI3	ENST00000247020.4|SDF2|ENSG00000132581.5|stromal cell-derived factor 2
hg19_v2_chrX_-_71497148_71497163	0.0479015	GLI3	ENST00000316084.6|RPS4X|ENSG00000198034.6|ribosomal protein S4, X-linked
hg19_v2_chrX_+_49178536_49178536	0.0478297	GLI3	ENST00000442437.2|GAGE12J|ENSG00000224659.2|G antigen 12J
hg19_v2_chr17_+_4736627_4736720	0.0476727	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr16_+_55522536_55522599	0.0476401	GLI3	ENST00000570283.1|MMP2|ENSG00000087245.8|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
hg19_v2_chr20_+_18568537_18568585	0.0476254	GLI3	ENST00000377452.3|DTD1|ENSG00000125821.7|D-tyrosyl-tRNA deacylase 1
hg19_v2_chr1_+_113263199_113263199	0.0474098	GLI3	ENST00000361886.3|FAM19A3|ENSG00000184599.9|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3
hg19_v2_chr14_-_61748550_61748559	0.0472881	GLI3	ENST00000555868.1|TMEM30B|ENSG00000182107.5|transmembrane protein 30B
hg19_v2_chr19_+_9945962_9946023	0.0472141	GLI3	ENST00000587625.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000247970.4|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000588695.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1
hg19_v2_chr5_+_9546306_9546329	0.0470606	GLI3	ENST00000508179.1|SNHG18|ENSG00000250786.1|small nucleolar RNA host gene 18 (non-protein coding)
hg19_v2_chr17_-_9923302_9923459	0.0467026	GLI3	ENST00000579158.1|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000542249.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr19_+_58962971_58963014	0.0465449	GLI3	ENST00000336614.4|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000545523.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599194.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000598244.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000599193.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000594214.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B 	ENST00000391696.1|ZNF324B|ENSG00000249471.3|zinc finger protein 324B
hg19_v2_chr2_-_27545431_27545444	0.0464724	GLI3	ENST00000233545.2|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein
hg19_v2_chr17_-_1029052_1029090	0.0464158	GLI3	ENST00000574437.1|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr7_+_87257701_87257770	0.0463072	GLI3	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr1_-_156722195_156722246	0.0462979	GLI3	ENST00000368206.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr14_+_24605389_24605446	0.0462652	GLI3	ENST00000382708.3|PSME1|ENSG00000092010.10|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) 	ENST00000561435.1|PSME1|ENSG00000092010.10|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
hg19_v2_chr2_+_113479063_113479063	0.0462127	GLI3	ENST00000327581.4|NT5DC4|ENSG00000144130.7|5'-nucleotidase domain containing 4
hg19_v2_chr20_+_3190006_3190178	0.0461722	GLI3	ENST00000380113.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000455664.2|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000399838.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
hg19_v2_chr19_+_57901208_57901280	0.0461289	GLI3	ENST00000366197.5|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000596282.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000597400.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000598895.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000596617.1|AC003002.6|ENSG00000269533.1|Uncharacterized protein  	ENST00000336128.7|ZNF548|ENSG00000188785.7|zinc finger protein 548
hg19_v2_chr1_+_67673297_67673349	0.0460412	GLI3	ENST00000425614.1|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000395227.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr9_-_116061476_116061476	0.0460115	GLI3	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr19_-_2085323_2085391	0.0458871	GLI3	ENST00000591638.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr3_-_179692042_179692053	0.0453423	GLI3	ENST00000468741.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like
hg19_v2_chr12_-_10607084_10607284	0.0452248	GLI3	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr11_-_118927816_118927868	0.0451965	GLI3	ENST00000534233.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532752.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000525859.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000404233.3|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532421.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000543287.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000527310.2|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000529972.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr8_-_22526597_22526661	0.0451454	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr11_-_115630900_115630923	0.0451104	GLI3	ENST00000537070.1|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900 	ENST00000499809.1|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900 	ENST00000514294.2|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900 	ENST00000535683.1|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900
hg19_v2_chr2_-_27333965_27333971	0.0449593	GLI3	ENST00000452318.2|CGREF1|ENSG00000138028.10|cell growth regulator with EF-hand domain 1
hg19_v2_chr17_-_30185946_30185970	0.0447535	GLI3	ENST00000579741.1|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr1_+_17634689_17634696	0.0446603	GLI3	ENST00000375453.1|PADI4|ENSG00000159339.9|peptidyl arginine deiminase, type IV 	ENST00000375448.4|PADI4|ENSG00000159339.9|peptidyl arginine deiminase, type IV
hg19_v2_chr17_+_6899366_6899384	0.0446433	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr12_-_45269430_45269440	0.0444911	GLI3	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr19_+_18726786_18726884	0.0441529	GLI3	ENST00000594709.1|TMEM59L|ENSG00000105696.4|transmembrane protein 59-like
hg19_v2_chr2_-_27294500_27294641	0.04413	GLI3	ENST00000447619.1|OST4|ENSG00000228474.1|oligosaccharyltransferase 4 homolog (S. cerevisiae) 	ENST00000429985.1|OST4|ENSG00000228474.1|oligosaccharyltransferase 4 homolog (S. cerevisiae) 	ENST00000456793.1|OST4|ENSG00000228474.1|oligosaccharyltransferase 4 homolog (S. cerevisiae)
hg19_v2_chr15_-_31453359_31453476	0.0440849	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr18_-_44550534_44550534	0.0438966	GLI3	ENST00000451265.1|TCEB3CL|ENSG00000234298.1|transcription elongation factor B polypeptide 3C-like
hg19_v2_chr14_-_74960030_74960050	0.0437917	GLI3	ENST00000553490.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000557510.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr22_+_45714361_45714374	0.0434819	GLI3	ENST00000452238.1|FAM118A|ENSG00000100376.7|family with sequence similarity 118, member A
hg19_v2_chr15_-_43882140_43882140	0.0434251	GLI3	ENST00000429176.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
hg19_v2_chr1_+_161736072_161736093	0.0433456	GLI3	ENST00000367942.3|ATF6|ENSG00000118217.5|activating transcription factor 6
hg19_v2_chr19_+_39833036_39833108	0.0433254	GLI3	ENST00000602243.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000598913.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000314471.6|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B
hg19_v2_chr12_+_133707570_133707570	0.0432664	GLI3	ENST00000416488.1|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000540096.2|CTD-2140B24.4|ENSG00000256825.4|Zinc finger protein 268
hg19_v2_chr11_-_73587719_73588033	0.0431787	GLI3	ENST00000545127.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000537289.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000355693.4|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
hg19_v2_chr18_+_13611763_13611815	0.0431231	GLI3	ENST00000585931.1|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr12_-_322504_322551	0.0429761	GLI3	ENST00000424061.2|SLC6A12|ENSG00000111181.8|solute carrier family 6 (neurotransmitter transporter), member 12
hg19_v2_chr17_+_17380294_17380351	0.0429594	GLI3	ENST00000268711.3|MED9|ENSG00000141026.4|mediator complex subunit 9 	ENST00000580462.1|MED9|ENSG00000141026.4|mediator complex subunit 9
hg19_v2_chr11_+_2407287_2407325	0.0429561	GLI3	ENST00000381036.3|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000492252.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr11_-_61124266_61124283	0.0429273	GLI3	ENST00000539890.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chr20_+_49348109_49348202	0.042636	GLI3	ENST00000396039.1|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr7_-_33148975_33149050	0.0424078	GLI3	ENST00000297157.3|RP9|ENSG00000164610.4|retinitis pigmentosa 9 (autosomal dominant)
hg19_v2_chr8_+_94929110_94929167	0.04238	GLI3	ENST00000520728.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr1_+_153631130_153631217	0.0422683	GLI3	ENST00000368685.5|SNAPIN|ENSG00000143553.6|SNAP-associated protein
hg19_v2_chr1_+_210111570_210111603	0.0421312	GLI3	ENST00000367019.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000472886.1|SYT14|ENSG00000143469.12|synaptotagmin XIV
hg19_v2_chr17_-_7137857_7137869	0.0421073	GLI3	ENST00000005340.5|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr7_-_47578840_47578876	0.0420399	GLI3	ENST00000450444.1|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr11_+_34938119_34938204	0.0420387	GLI3	ENST00000227868.4|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X 	ENST00000430469.2|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X 	ENST00000533262.1|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X
hg19_v2_chr17_+_10600894_10600974	0.0420385	GLI3	ENST00000379774.4|ADPRM|ENSG00000170222.11|ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
hg19_v2_chr6_-_159421198_159421254	0.0418051	GLI3	ENST00000252655.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000297262.3|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000367069.2|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr11_-_73309228_73309257	0.0417925	GLI3	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr18_-_44544607_44544607	0.0417272	GLI3	ENST00000591973.2|TCEB3CL2|ENSG00000266996.2|transcription elongation factor B polypeptide 3C-like 2
hg19_v2_chr11_-_118550346_118550364	0.0415968	GLI3	ENST00000530256.1|TREH|ENSG00000118094.7|trehalase (brush-border membrane glycoprotein)
hg19_v2_chrX_-_152245978_152245978	0.0415174	GLI3	ENST00000538162.2|PNMA6D|ENSG00000257088.2|paraneoplastic Ma antigen family member 6D (pseudogene)
hg19_v2_chr3_-_10052763_10052816	0.0415173	GLI3	ENST00000383808.2|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000426698.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000470827.2|EMC3|ENSG00000125037.8|ER membrane protein complex subunit 3
hg19_v2_chr1_-_36945097_36945097	0.0414622	GLI3	ENST00000331941.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000418048.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000338937.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000440588.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte)
hg19_v2_chr14_+_105155925_105155979	0.0413422	GLI3	ENST00000330634.7|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000398337.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000392634.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing
hg19_v2_chr11_+_111783450_111783475	0.041304	GLI3	ENST00000537382.1|HSPB2|ENSG00000170276.4|Homo sapiens heat shock 27kDa protein 2 (HSPB2), mRNA.
hg19_v2_chr17_+_7621045_7621079	0.0412335	GLI3	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr5_+_161494770_161494787	0.0411804	GLI3	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr20_-_42939782_42939858	0.0411386	GLI3	ENST00000396825.3|FITM2|ENSG00000197296.5|fat storage-inducing transmembrane protein 2
hg19_v2_chr6_-_134373732_134373795	0.041034	GLI3	ENST00000275230.5|SLC2A12|ENSG00000146411.5|solute carrier family 2 (facilitated glucose transporter), member 12
hg19_v2_chr12_+_14927270_14927347	0.0409547	GLI3	ENST00000544848.1|H2AFJ|ENSG00000246705.3|H2A histone family, member J
hg19_v2_chr22_-_41258074_41258130	0.0407907	GLI3	ENST00000307221.4|DNAJB7|ENSG00000172404.4|DnaJ (Hsp40) homolog, subfamily B, member 7
hg19_v2_chr16_-_57832004_57832027	0.0407562	GLI3	ENST00000562503.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr7_-_151217001_151217019	0.0407298	GLI3	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr9_+_15552867_15552907	0.0407057	GLI3	ENST00000535968.1|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr19_+_46195895_46195959	0.0405853	GLI3	ENST00000366382.4|QPCTL|ENSG00000011478.7|glutaminyl-peptide cyclotransferase-like
hg19_v2_chr11_-_7904464_7904511	0.0405175	GLI3	ENST00000502624.2|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5	ENST00000527565.1|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5
hg19_v2_chr3_+_127323739_127323739	0.0405054	GLI3	ENST00000491422.1|MCM2|ENSG00000073111.9|minichromosome maintenance complex component 2
hg19_v2_chr12_+_12510045_12510073	0.0401768	GLI3	ENST00000314565.4|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr17_-_61920280_61920425	0.0400619	GLI3	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chr11_+_1968508_1968589	0.0399724	GLI3	ENST00000397298.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000381519.1|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000397297.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000381514.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23 	ENST00000397294.3|MRPL23|ENSG00000214026.6|mitochondrial ribosomal protein L23
hg19_v2_chr22_-_50051151_50051190	0.0399485	GLI3	ENST00000400023.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34 	ENST00000444628.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34
hg19_v2_chr17_-_3867585_3867748	0.0398249	GLI3	ENST00000359983.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000352011.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397043.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397041.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397035.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397039.1|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000309890.7|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous
hg19_v2_chr4_-_20985632_20985664	0.0397881	GLI3	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr14_-_107219365_107219365	0.0397471	GLI3	ENST00000424969.2|IGHV3-74|ENSG00000224650.2|immunoglobulin heavy variable 3-74
hg19_v2_chr16_-_3767506_3767550	0.0396356	GLI3	ENST00000538171.1|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr22_-_20461786_20461786	0.0394112	GLI3	ENST00000426804.1|RIMBP3|ENSG00000196622.6|RIMS binding protein 3
hg19_v2_chr12_-_57634475_57634532	0.0391544	GLI3	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr16_+_30212050_30212050	0.0390376	GLI3	ENST00000563322.1|SULT1A3|ENSG00000261052.1|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3
hg19_v2_chrX_-_151903101_151903164	0.0389065	GLI3	ENST00000393900.3|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12
hg19_v2_chr19_-_39466396_39466550	0.0388718	GLI3	ENST00000292852.4|FBXO17|ENSG00000269190.1|F-box protein 17
hg19_v2_chr19_-_44100275_44100302	0.0387727	GLI3	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr19_-_40791302_40791443	0.0387615	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr15_+_90895471_90895572	0.0385603	GLI3	ENST00000354377.3|ZNF774|ENSG00000196391.6|zinc finger protein 774 	ENST00000379090.5|ZNF774|ENSG00000196391.6|zinc finger protein 774
hg19_v2_chr17_+_7905912_7905945	0.0384521	GLI3	ENST00000254854.4|GUCY2D|ENSG00000132518.6|guanylate cyclase 2D, membrane (retina-specific)
hg19_v2_chr16_+_20817746_20817755	0.0380965	GLI3	ENST00000568894.1|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp
hg19_v2_chr8_+_16884740_16884804	0.0379511	GLI3	ENST00000318063.5|MICU3|ENSG00000155970.7|mitochondrial calcium uptake family, member 3
hg19_v2_chr6_-_36725157_36725188	0.0379091	GLI3	ENST00000393189.2|CPNE5|ENSG00000124772.7|copine V
hg19_v2_chr3_+_47422485_47422562	0.0378026	GLI3	ENST00000431726.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000456221.1|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23 	ENST00000265562.4|PTPN23|ENSG00000076201.10|protein tyrosine phosphatase, non-receptor type 23
hg19_v2_chr3_+_183894737_183894828	0.0375985	GLI3	ENST00000432591.1|AP2M1|ENSG00000161203.9|adaptor-related protein complex 2, mu 1 subunit 	ENST00000431779.1|AP2M1|ENSG00000161203.9|adaptor-related protein complex 2, mu 1 subunit
hg19_v2_chr16_+_28857957_28857969	0.0375825	GLI3	ENST00000567536.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr20_-_50808236_50808264	0.0375625	GLI3	ENST00000361387.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr11_+_832944_832994	0.0375235	GLI3	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr1_+_160765884_160765903	0.0375022	GLI3	ENST00000392203.4|LY9|ENSG00000122224.13|lymphocyte antigen 9
hg19_v2_chr14_-_21492113_21492227	0.0374319	GLI3	ENST00000554094.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr3_-_195538760_195538775	0.0373045	GLI3	ENST00000475231.1|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr7_+_90032821_90032881	0.0371301	GLI3	ENST00000427904.1|CLDN12|ENSG00000157224.11|claudin 12
hg19_v2_chr11_+_68451943_68451986	0.0370968	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr2_-_27434756_27434898	0.0369082	GLI3	ENST00000426119.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 	ENST00000412471.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
hg19_v2_chr14_-_60097524_60097538	0.0368198	GLI3	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr1_+_12977513_12977513	0.0367975	GLI3	ENST00000330881.5|PRAMEF7|ENSG00000204510.1|PRAME family member 7
hg19_v2_chr6_-_35480640_35480653	0.036774	GLI3	ENST00000428978.1|TULP1|ENSG00000112041.8|tubby like protein 1 	ENST00000322263.4|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr7_+_73624276_73624311	0.0367536	GLI3	ENST00000475494.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2 	ENST00000398475.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2
hg19_v2_chr21_-_35831880_35831902	0.0364115	GLI3	ENST00000399289.3|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1 	ENST00000432085.1|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1
hg19_v2_chr16_-_89043605_89043625	0.036274	GLI3	ENST00000268679.4|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chrX_-_152343394_152343394	0.0361545	GLI3	ENST00000370261.1|PNMA6B|ENSG00000203902.2|paraneoplastic Ma antigen family member 6B (pseudogene)
hg19_v2_chr9_-_116159635_116159682	0.035976	GLI3	ENST00000452726.1|ALAD|ENSG00000148218.11|aminolevulinate dehydratase
hg19_v2_chr3_+_187871060_187871102	0.0355202	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr4_+_62067860_62067900	0.0354071	GLI3	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr3_-_47619623_47619623	0.0353796	GLI3	ENST00000456150.1|CSPG5|ENSG00000114646.5|chondroitin sulfate proteoglycan 5 (neuroglycan C)
hg19_v2_chr19_-_20748541_20748568	0.0353678	GLI3	ENST00000427401.4|ZNF737|ENSG00000237440.4|zinc finger protein 737 	ENST00000594419.1|ZNF737|ENSG00000237440.4|zinc finger protein 737
hg19_v2_chr2_+_235860616_235860645	0.0352891	GLI3	ENST00000392011.2|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chrX_-_47518498_47518521	0.035172	GLI3	ENST00000335890.2|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr4_+_159593271_159593295	0.0350183	GLI3	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr17_+_16284749_16284779	0.0348138	GLI3	ENST00000578706.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr16_+_610407_610429	0.0347759	GLI3	ENST00000409413.3|C16orf11|ENSG00000161992.5|chromosome 16 open reading frame 11
hg19_v2_chr1_+_113263041_113263041	0.0347384	GLI3	ENST00000369630.3|FAM19A3|ENSG00000184599.9|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3
hg19_v2_chr15_+_81591757_81591780	0.0346754	GLI3	ENST00000558332.1|IL16|ENSG00000172349.12|interleukin 16
hg19_v2_chr19_-_40596828_40596855	0.0345448	GLI3	ENST00000414720.2|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000455521.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000340963.5|ZNF780A|ENSG00000197782.10|zinc finger protein 780A 	ENST00000595773.1|ZNF780A|ENSG00000197782.10|zinc finger protein 780A
hg19_v2_chr8_+_38965048_38965292	0.0345236	GLI3	ENST00000399831.3|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000437682.2|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000519315.1|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000379907.4|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32 	ENST00000522506.1|ADAM32|ENSG00000197140.10|ADAM metallopeptidase domain 32
hg19_v2_chr17_+_46185111_46185256	0.0344958	GLI3	ENST00000582104.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000584335.1|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr17_-_40540484_40540537	0.0344825	GLI3	ENST00000588969.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr3_+_4535155_4535234	0.034424	GLI3	ENST00000544951.1|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr17_-_56621665_56621729	0.0341816	GLI3	ENST00000321691.3|C17orf47|ENSG00000181013.3|chromosome 17 open reading frame 47
hg19_v2_chr19_+_30863271_30863338	0.0341647	GLI3	ENST00000355537.3|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr7_+_29846099_29846181	0.0341202	GLI3	ENST00000409123.1|WIPF3|ENSG00000122574.6|WAS/WASL interacting protein family, member 3
hg19_v2_chr7_+_116312411_116312502	0.0337476	GLI3	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr22_-_25170444_25170444	0.0336774	GLI3	ENST00000533313.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3 	ENST00000527701.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr1_+_165864821_165864850	0.0336303	GLI3	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chrX_+_152240819_152240839	0.0336242	GLI3	ENST00000421798.3|PNMA6C|ENSG00000235961.3|paraneoplastic Ma antigen family member 6C 	ENST00000535416.1|PNMA6A|ENSG00000224201.3|paraneoplastic Ma antigen family member 6A
hg19_v2_chr19_+_7011509_7011526	0.0336156	GLI3	ENST00000377296.3|AC025278.1|ENSG00000204752.3|Uncharacterized protein
hg19_v2_chr9_-_8857776_8857878	0.0334838	GLI3	ENST00000481079.1|PTPRD|ENSG00000153707.11|protein tyrosine phosphatase, receptor type, D
hg19_v2_chr9_-_35112376_35112395	0.0333829	GLI3	ENST00000488109.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr4_+_40194609_40194616	0.0333589	GLI3	ENST00000508513.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr19_-_22193706_22193721	0.0333449	GLI3	ENST00000597040.1|ZNF208|ENSG00000160321.10|zinc finger protein 208
hg19_v2_chr7_+_2636522_2636546	0.0332971	GLI3	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr19_-_46145696_46145820	0.0332458	GLI3	ENST00000588172.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2
hg19_v2_chr9_+_109625378_109625458	0.033214	GLI3	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr19_-_46318486_46318531	0.0330682	GLI3	ENST00000597055.1|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr17_+_75450075_75450094	0.0329948	GLI3	ENST00000592951.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr6_+_116601265_116601288	0.0329131	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr7_-_151107106_151107129	0.0328442	GLI3	ENST00000334493.6|WDR86|ENSG00000187260.11|WD repeat domain 86
hg19_v2_chr8_-_57906362_57906452	0.0327542	GLI3	ENST00000262644.4|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chr17_-_42200996_42201070	0.032723	GLI3	ENST00000587135.1|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000225983.6|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000393622.2|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000588703.1|HDAC5|ENSG00000108840.11|histone deacetylase 5
hg19_v2_chr16_+_2097403_2097466	0.0326379	GLI3	ENST00000219476.3|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr19_-_48894104_48894170	0.032474	GLI3	ENST00000597017.1|KDELR1|ENSG00000105438.4|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
hg19_v2_chr1_+_26872324_26872362	0.0323741	GLI3	ENST00000531382.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr10_-_35104185_35104267	0.0323489	GLI3	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr19_+_17337473_17337549	0.032119	GLI3	ENST00000598068.1|OCEL1|ENSG00000099330.4|occludin/ELL domain containing 1
hg19_v2_chrX_-_148713365_148713438	0.0321106	GLI3	ENST00000511776.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000507237.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr1_-_9132311_9132325	0.0320202	GLI3	ENST00000474145.1|SLC2A5|ENSG00000142583.13|solute carrier family 2 (facilitated glucose/fructose transporter), member 5
hg19_v2_chrX_+_70364667_70364721	0.0319886	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr9_+_129097520_129097531	0.0318411	GLI3	ENST00000436593.3|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr17_-_1419914_1419939	0.0317846	GLI3	ENST00000397335.3|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000574561.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr7_-_131241361_131241398	0.0312391	GLI3	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr11_-_36310958_36310999	0.031186	GLI3	ENST00000532705.1|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000263401.5|COMMD9|ENSG00000110442.7|COMM domain containing 9 	ENST00000452374.2|COMMD9|ENSG00000110442.7|COMM domain containing 9
hg19_v2_chr16_-_3767551_3767598	0.0310957	GLI3	ENST00000246957.5|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr11_+_46366799_46366832	0.0309378	GLI3	ENST00000532868.2|DGKZ|ENSG00000149091.11|diacylglycerol kinase, zeta
hg19_v2_chr16_-_755819_755860	0.0309239	GLI3	ENST00000397621.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr8_+_11351494_11351511	0.0308407	GLI3	ENST00000259089.4|BLK|ENSG00000136573.8|B lymphoid tyrosine kinase
hg19_v2_chr7_-_123197733_123197890	0.0307595	GLI3	ENST00000470123.1|NDUFA5|ENSG00000128609.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 	ENST00000471770.1|NDUFA5|ENSG00000128609.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
hg19_v2_chrX_-_152939780_152939823	0.0304425	GLI3	ENST00000370142.1|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000393831.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000447676.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase
hg19_v2_chr3_-_135915401_135915439	0.0303101	GLI3	ENST00000491050.1|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr15_+_63569731_63569783	0.0302585	GLI3	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr13_+_51796497_51796517	0.0302093	GLI3	ENST00000322475.8|FAM124A|ENSG00000150510.11|family with sequence similarity 124A 	ENST00000280057.6|FAM124A|ENSG00000150510.11|family with sequence similarity 124A
hg19_v2_chr10_+_6130966_6131047	0.0301887	GLI3	ENST00000437845.2|RBM17|ENSG00000134453.11|RNA binding motif protein 17 	ENST00000432931.1|RBM17|ENSG00000134453.11|RNA binding motif protein 17
hg19_v2_chr1_-_19811132_19811158	0.0301255	GLI3	ENST00000433834.1|CAPZB|ENSG00000077549.13|capping protein (actin filament) muscle Z-line, beta
hg19_v2_chr9_-_130517309_130517388	0.0298102	GLI3	ENST00000414380.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr19_-_46318561_46318577	0.0297922	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr5_-_1799965_1800009	0.0295662	GLI3	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr11_+_66247478_66247503	0.0295578	GLI3	ENST00000531863.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3 	ENST00000532677.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3
hg19_v2_chr19_+_782755_782833	0.029514	GLI3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr14_+_52164820_52164841	0.029484	GLI3	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr12_+_51632638_51632665	0.0294602	GLI3	ENST00000549732.2|DAZAP2|ENSG00000183283.11|DAZ associated protein 2
hg19_v2_chr1_+_43735678_43735696	0.0292653	GLI3	ENST00000432792.2|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chrX_+_153170189_153170189	0.0291323	GLI3	ENST00000358927.2|AVPR2|ENSG00000126895.9|arginine vasopressin receptor 2
hg19_v2_chr5_-_149792295_149792332	0.0290607	GLI3	ENST00000518797.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000524315.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000009530.7|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000377795.3|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain
hg19_v2_chr22_+_46481861_46481895	0.028926	GLI3	ENST00000360737.3|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr1_-_45308616_45308735	0.0288417	GLI3	ENST00000447098.2|PTCH2|ENSG00000117425.9|patched 2 	ENST00000372192.3|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr6_-_46703430_46703465	0.02881	GLI3	ENST00000537365.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr9_-_113800341_113800373	0.0284577	GLI3	ENST00000358883.4|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr9_-_122131696_122131745	0.028448	GLI3	ENST00000373964.2|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1 	ENST00000265922.3|BRINP1|ENSG00000078725.8|bone morphogenetic protein/retinoic acid inducible neural-specific 1
hg19_v2_chr20_+_34129770_34129879	0.0282364	GLI3	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr17_-_79359046_79359058	0.0280806	GLI3	ENST00000574041.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr19_-_20844368_20844407	0.0280662	GLI3	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr20_+_3777078_3777093	0.0280594	GLI3	ENST00000340833.4|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr22_+_20905286_20905316	0.0280324	GLI3	ENST00000428629.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr2_-_61108449_61108536	0.0279618	GLI3	ENST00000439412.1|AC010733.4|ENSG00000228414.2|AC010733.4	ENST00000452343.1|AC010733.4|ENSG00000228414.2|AC010733.4
hg19_v2_chr11_+_73588014_73588073	0.0276382	GLI3	ENST00000310571.3|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000504441.2|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000543814.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000535604.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000542293.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000536003.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000544552.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1
hg19_v2_chr16_+_616995_617041	0.0273886	GLI3	ENST00000293874.2|PIGQ|ENSG00000007541.10|phosphatidylinositol glycan anchor biosynthesis, class Q 	ENST00000424439.2|NHLRC4|ENSG00000257108.1|NHL repeat containing 4 	ENST00000540585.1|NHLRC4|ENSG00000257108.1|NHL repeat containing 4 	ENST00000409527.2|PIGQ|ENSG00000007541.10|phosphatidylinositol glycan anchor biosynthesis, class Q
hg19_v2_chr9_+_131218408_131218487	0.0273203	GLI3	ENST00000351030.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000604420.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000535026.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000448249.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000393527.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr12_+_51785057_51785105	0.027269	GLI3	ENST00000535225.2|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr20_+_18125727_18125755	0.0271774	GLI3	ENST00000489634.2|CSRP2BP|ENSG00000149474.9|CSRP2 binding protein
hg19_v2_chr10_-_103599591_103599635	0.0271601	GLI3	ENST00000348850.5|KCNIP2|ENSG00000120049.14|Kv channel interacting protein 2
hg19_v2_chr15_+_75628419_75628446	0.0271069	GLI3	ENST00000567377.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000562789.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000568301.1|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chrX_-_151903184_151903211	0.0270565	GLI3	ENST00000357916.4|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12 	ENST00000393869.3|MAGEA12|ENSG00000213401.4|melanoma antigen family A, 12
hg19_v2_chr19_-_17571722_17571763	0.0270299	GLI3	ENST00000301944.2|NXNL1|ENSG00000171773.2|nucleoredoxin-like 1
hg19_v2_chr8_-_33457453_33457624	0.0270124	GLI3	ENST00000523956.1|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative) 	ENST00000256261.4|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative)
hg19_v2_chr11_-_73720122_73720136	0.0267827	GLI3	ENST00000426995.2|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr2_-_31030277_31030317	0.0267667	GLI3	ENST00000534090.2|CAPN13|ENSG00000162949.12|calpain 13 	ENST00000295055.8|CAPN13|ENSG00000162949.12|calpain 13
hg19_v2_chr8_-_145980968_145980996	0.0266564	GLI3	ENST00000292562.7|ZNF251|ENSG00000198169.4|zinc finger protein 251
hg19_v2_chr1_+_202976493_202976530	0.0265851	GLI3	ENST00000367242.3|TMEM183A|ENSG00000163444.7|transmembrane protein 183A
hg19_v2_chr3_-_142682178_142682178	0.0265382	GLI3	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr17_-_40897043_40897087	0.0263894	GLI3	ENST00000428826.2|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000592492.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000585893.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000593214.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000590078.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000586382.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000415827.2|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000592743.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000586089.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000435174.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila)
hg19_v2_chr8_-_128960591_128960591	0.0263859	GLI3	ENST00000539634.1|TMEM75|ENSG00000256655.1|transmembrane protein 75
hg19_v2_chr3_+_46598888_46598888	0.0262981	GLI3	ENST00000599511.1|LUZPP1|ENSG00000268324.1|HCG1777807; Leucine zipper protein 3; Uncharacterized protein
hg19_v2_chr14_-_106586656_106586668	0.0261619	GLI3	ENST00000390602.2|IGHV3-13|ENSG00000211942.2|immunoglobulin heavy variable 3-13
hg19_v2_chr14_-_106791536_106791536	0.0261579	GLI3	ENST00000390613.2|IGHV3-30|ENSG00000211953.2|immunoglobulin heavy variable 3-30
hg19_v2_chr9_+_139877445_139877445	0.0261239	GLI3	ENST00000408973.2|LCNL1|ENSG00000214402.6|lipocalin-like 1
hg19_v2_chr3_-_38991853_38991853	0.0258549	GLI3	ENST00000456224.3|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit
hg19_v2_chr10_+_70939983_70940044	0.0256339	GLI3	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr9_+_138391805_138391830	0.0253593	GLI3	ENST00000371785.1|MRPS2|ENSG00000122140.6|mitochondrial ribosomal protein S2
hg19_v2_chr3_-_123123407_123123440	0.0251333	GLI3	ENST00000466617.1|ADCY5|ENSG00000173175.10|adenylate cyclase 5
hg19_v2_chr15_-_57025728_57025743	0.0249838	GLI3	ENST00000559352.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr16_-_58033762_58033762	0.0249246	GLI3	ENST00000299237.2|ZNF319|ENSG00000166188.2|zinc finger protein 319
hg19_v2_chr22_-_22901636_22901747	0.0248986	GLI3	ENST00000406503.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000439106.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000402697.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000543184.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000398743.2|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma
hg19_v2_chr13_+_76210448_76210494	0.0244953	GLI3	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr4_+_9226622_9226622	0.0244493	GLI3	ENST00000429667.1|USP17L13|ENSG00000232399.2|ubiquitin specific peptidase 17-like family member 13
hg19_v2_chr3_-_122712079_122712120	0.0243244	GLI3	ENST00000393583.2|SEMA5B|ENSG00000082684.10|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
hg19_v2_chr12_+_10365404_10365547	0.0241818	GLI3	ENST00000266458.5|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000421801.2|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000544284.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545047.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000543602.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545887.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1
hg19_v2_chr8_-_144691718_144691784	0.0241808	GLI3	ENST00000377579.3|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000433751.1|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000220966.6|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like
hg19_v2_chr12_+_6881678_6881707	0.0241402	GLI3	ENST00000441671.2|LAG3|ENSG00000089692.4|lymphocyte-activation gene 3 	ENST00000203629.2|LAG3|ENSG00000089692.4|lymphocyte-activation gene 3
hg19_v2_chr17_+_38333263_38333368	0.0240941	GLI3	ENST00000456989.2|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000543876.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000544503.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000264644.6|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1 	ENST00000538884.1|RAPGEFL1|ENSG00000108352.7|Rap guanine nucleotide exchange factor (GEF)-like 1
hg19_v2_chr7_-_143059845_143059866	0.0239704	GLI3	ENST00000443739.2|FAM131B|ENSG00000159784.13|family with sequence similarity 131, member B
hg19_v2_chr1_+_44457261_44457280	0.0238683	GLI3	ENST00000372318.3|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr1_+_27114418_27114518	0.0238444	GLI3	ENST00000078527.4|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr1_+_108918421_108918421	0.0237585	GLI3	ENST00000444143.2|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6 	ENST00000294652.8|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6
hg19_v2_chr15_+_75628394_75628414	0.0237024	GLI3	ENST00000564815.1|COMMD4|ENSG00000140365.11|COMM domain containing 4 	ENST00000338995.6|COMMD4|ENSG00000140365.11|COMM domain containing 4
hg19_v2_chr14_-_70655684_70655787	0.0236709	GLI3	ENST00000356921.2|SLC8A3|ENSG00000100678.14|solute carrier family 8 (sodium/calcium exchanger), member 3 	ENST00000381269.2|SLC8A3|ENSG00000100678.14|solute carrier family 8 (sodium/calcium exchanger), member 3 	ENST00000357887.3|SLC8A3|ENSG00000100678.14|solute carrier family 8 (sodium/calcium exchanger), member 3
hg19_v2_chr22_-_30953587_30953717	0.0235701	GLI3	ENST00000453479.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr7_+_69064300_69064342	0.0235112	GLI3	ENST00000342771.4|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr22_-_25170683_25170683	0.0233703	GLI3	ENST00000332271.5|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr16_-_57798253_57798301	0.0232464	GLI3	ENST00000565270.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr11_-_30607819_30607867	0.0232168	GLI3	ENST00000448418.2|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr1_+_183774285_183774294	0.0230649	GLI3	ENST00000539189.1|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr17_+_28884130_28884130	0.0230429	GLI3	ENST00000580161.1|TBC1D29|ENSG00000266733.1|TBC1 domain family, member 29
hg19_v2_chr3_-_126236588_126236601	0.0229896	GLI3	ENST00000383579.3|UROC1|ENSG00000159650.4|urocanate hydratase 1
hg19_v2_chr2_-_84686552_84686624	0.0229523	GLI3	ENST00000393868.2|SUCLG1|ENSG00000163541.7|succinate-CoA ligase, alpha subunit
hg19_v2_chr1_-_11866034_11866115	0.0228962	GLI3	ENST00000376590.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr20_+_31755934_31755974	0.0227577	GLI3	ENST00000354932.5|BPIFA2|ENSG00000131050.6|BPI fold containing family A, member 2
hg19_v2_chr8_+_22436635_22436663	0.0226877	GLI3	ENST00000452226.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397760.4|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000339162.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397761.2|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr1_-_156722015_156722034	0.0225919	GLI3	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr19_+_29097595_29097640	0.0224389	GLI3	ENST00000587961.1|AC079466.1|ENSG00000266976.1|AC079466.1
hg19_v2_chr11_-_35441597_35441613	0.0224035	GLI3	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr1_+_15802594_15802601	0.0222931	GLI3	ENST00000375910.3|CELA2B|ENSG00000215704.5|chymotrypsin-like elastase family, member 2B
hg19_v2_chr14_-_51297360_51297426	0.0220502	GLI3	ENST00000496749.1|NIN|ENSG00000100503.19|ninein (GSK3B interacting protein)
hg19_v2_chr1_+_32671236_32671280	0.0220411	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr1_+_43735646_43735665	0.0220261	GLI3	ENST00000439858.1|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr11_+_118842417_118842477	0.0219113	GLI3	ENST00000317011.3|FOXR1|ENSG00000176302.8|forkhead box R1
hg19_v2_chr16_+_68279207_68279252	0.0218397	GLI3	ENST00000413021.2|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000565744.1|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV 	ENST00000219345.5|PLA2G15|ENSG00000103066.8|phospholipase A2, group XV
hg19_v2_chrX_-_17878827_17878846	0.0217425	GLI3	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr9_+_134378289_134378409	0.0217068	GLI3	ENST00000423007.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000404875.2|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000441334.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000341012.7|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000372228.3|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000402686.3|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000419118.2|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000541219.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000354713.4|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000418774.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000415075.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000448212.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000430619.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1
hg19_v2_chr1_-_154832316_154832336	0.0215833	GLI3	ENST00000361147.4|KCNN3|ENSG00000143603.14|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
hg19_v2_chr10_+_49892904_49892925	0.0214154	GLI3	ENST00000360890.2|WDFY4|ENSG00000128815.13|WDFY family member 4
hg19_v2_chr8_-_38006272_38006272	0.021396	GLI3	ENST00000522050.1|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
hg19_v2_chr10_+_1034338_1034411	0.0212655	GLI3	ENST00000360803.4|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000538293.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr1_-_160549235_160549306	0.0212217	GLI3	ENST00000368054.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368048.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000311224.4|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368051.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000534968.1|CD84|ENSG00000066294.10|CD84 molecule
hg19_v2_chr7_-_56118981_56119152	0.0211322	GLI3	ENST00000419984.2|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000413218.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000424596.1|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr9_+_136399929_136399975	0.0207742	GLI3	ENST00000393060.1|ADAMTSL2|ENSG00000197859.5|ADAMTS-like 2
hg19_v2_chr10_-_62332357_62332428	0.0207027	GLI3	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr9_+_135285579_135285615	0.0206633	GLI3	ENST00000343036.2|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171 	ENST00000393216.2|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171
hg19_v2_chr21_+_36041688_36041688	0.0205813	GLI3	ENST00000360731.3|CLIC6|ENSG00000159212.8|chloride intracellular channel 6 	ENST00000349499.2|CLIC6|ENSG00000159212.8|chloride intracellular channel 6
hg19_v2_chr10_+_134000404_134000432	0.0205735	GLI3	ENST00000338492.4|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4 	ENST00000368629.1|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4
hg19_v2_chr12_-_56122761_56123004	0.0204169	GLI3	ENST00000552164.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000420846.3|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000257857.4|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr9_-_80645520_80645520	0.0204166	GLI3	ENST00000411677.1|GNAQ|ENSG00000156052.6|guanine nucleotide binding protein (G protein), q polypeptide
hg19_v2_chr16_+_30194293_30194308	0.0203826	GLI3	ENST00000561815.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chrX_-_138724677_138724887	0.0201539	GLI3	ENST00000370573.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000338585.6|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000370576.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr12_-_53715328_53715415	0.020048	GLI3	ENST00000547757.1|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia 	ENST00000394384.3|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia 	ENST00000209873.4|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia
hg19_v2_chr2_-_24307635_24307660	0.0200255	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr7_+_99954224_99954373	0.0200188	GLI3	ENST00000608825.1|PILRB|ENSG00000121716.14|paired immunoglobin-like type 2 receptor beta
hg19_v2_chr12_-_112847354_112847457	0.0199873	GLI3	ENST00000550566.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000553213.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000424576.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000202773.9|RPL6|ENSG00000089009.11|ribosomal protein L6
hg19_v2_chr4_-_17812309_17812394	0.0197745	GLI3	ENST00000382247.1|DCAF16|ENSG00000163257.6|DDB1 and CUL4 associated factor 16 	ENST00000536863.1|DCAF16|ENSG00000163257.6|DDB1 and CUL4 associated factor 16
hg19_v2_chr16_-_2260834_2260906	0.0194833	GLI3	ENST00000562360.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5 	ENST00000566018.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5
hg19_v2_chr11_+_1718425_1718425	0.0193555	GLI3	ENST00000382160.1|KRTAP5-6|ENSG00000205864.1|keratin associated protein 5-6
hg19_v2_chr12_-_76377795_76377810	0.0193166	GLI3	ENST00000552856.1|RP11-114H23.1|ENSG00000258077.2|RP11-114H23.1
hg19_v2_chr2_+_149402009_149402009	0.0192536	GLI3	ENST00000457184.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr6_+_160183492_160183523	0.0192019	GLI3	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr1_+_201951741_201951794	0.0191281	GLI3	ENST00000295640.4|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B) 	ENST00000367286.3|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B)
hg19_v2_chr12_-_57940904_57941002	0.0190738	GLI3	ENST00000550954.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000434715.3|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000546670.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50) 	ENST00000543672.1|DCTN2|ENSG00000175203.11|dynactin 2 (p50)
hg19_v2_chr11_-_2444242_2444275	0.0189554	GLI3	ENST00000533881.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000533060.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000528453.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000155858.6|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5 	ENST00000452833.1|TRPM5|ENSG00000070985.9|transient receptor potential cation channel, subfamily M, member 5
hg19_v2_chr16_-_2318055_2318104	0.0188997	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr1_+_1551220_1551320	0.0188584	GLI3	ENST00000378712.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr10_+_135192695_135192780	0.0187904	GLI3	ENST00000368539.4|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000278060.5|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000357296.3|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino)
hg19_v2_chr5_-_179107975_179108039	0.0187075	GLI3	ENST00000376974.4|CBY3|ENSG00000204659.4|chibby homolog 3 (Drosophila)
hg19_v2_chr11_-_35441524_35441578	0.0186115	GLI3	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr4_-_187476721_187476721	0.018487	GLI3	ENST00000307161.5|MTNR1A|ENSG00000168412.6|melatonin receptor 1A
hg19_v2_chr17_-_1420006_1420036	0.0184394	GLI3	ENST00000320345.6|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000406424.4|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr5_+_140019004_140019068	0.0183197	GLI3	ENST00000394671.3|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6 	ENST00000511410.1|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6 	ENST00000537378.1|TMCO6|ENSG00000113119.8|transmembrane and coiled-coil domains 6
hg19_v2_chr20_-_1306391_1306513	0.0182784	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr12_-_6798410_6798503	0.0182265	GLI3	ENST00000361959.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000436774.2|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000544482.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr7_+_150065278_150065369	0.0180795	GLI3	ENST00000519397.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000479668.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000540729.1|REPIN1|ENSG00000214022.7|replication initiator 1
hg19_v2_chr22_+_29279552_29279586	0.0180455	GLI3	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr2_+_9614652_9614704	0.0180345	GLI3	ENST00000497473.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000470914.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000481367.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 	ENST00000545602.1|IAH1|ENSG00000134330.14|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)
hg19_v2_chr1_+_1217489_1217576	0.0178883	GLI3	ENST00000325425.8|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit 	ENST00000400928.3|SCNN1D|ENSG00000162572.15|sodium channel, non-voltage-gated 1, delta subunit
hg19_v2_chr4_+_3344141_3344178	0.0178573	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr8_-_11853819_11853827	0.0178073	GLI3	ENST00000526438.1|DEFB134|ENSG00000205882.4|defensin, beta 134 	ENST00000382205.4|DEFB134|ENSG00000205882.4|defensin, beta 134
hg19_v2_chr3_-_16554403_16554429	0.0175458	GLI3	ENST00000449415.1|RFTN1|ENSG00000131378.9|raftlin, lipid raft linker 1 	ENST00000441460.1|RFTN1|ENSG00000131378.9|raftlin, lipid raft linker 1
hg19_v2_chr7_-_101212244_101212286	0.0174195	GLI3	ENST00000451953.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007 	ENST00000434537.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007 	ENST00000437900.1|LINC01007|ENSG00000233123.1|long intergenic non-protein coding RNA 1007
hg19_v2_chr16_+_30194118_30194165	0.0170031	GLI3	ENST00000563778.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chrX_+_49020882_49020882	0.0169833	GLI3	ENST00000454342.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr12_-_57504069_57504123	0.0169225	GLI3	ENST00000543873.2|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000554663.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced 	ENST00000557635.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr19_-_35323762_35323779	0.0168762	GLI3	ENST00000590963.1|CTC-523E23.4|ENSG00000267767.2|CTC-523E23.4
hg19_v2_chr11_+_18194384_18194384	0.0168236	GLI3	ENST00000314254.3|MRGPRX4|ENSG00000179817.3|MAS-related GPR, member X4
hg19_v2_chr6_-_163148780_163148813	0.0167705	GLI3	ENST00000366892.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366898.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366897.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase 	ENST00000366896.1|PARK2|ENSG00000185345.14|parkin RBR E3 ubiquitin protein ligase
hg19_v2_chr10_-_52383644_52383743	0.0165215	GLI3	ENST00000361781.2|SGMS1|ENSG00000198964.9|sphingomyelin synthase 1
hg19_v2_chr16_-_71918033_71918107	0.0165027	GLI3	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr19_+_1452188_1452221	0.0164909	GLI3	ENST00000587149.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr14_-_107114267_107114277	0.0163767	GLI3	ENST00000454421.2|IGHV3-64|ENSG00000223648.2|immunoglobulin heavy variable 3-64
hg19_v2_chr8_+_140943416_140943416	0.0162787	GLI3	ENST00000507535.3|C8orf17|ENSG00000250733.3|chromosome 8 open reading frame 17
hg19_v2_chr3_-_10334617_10334637	0.0162445	GLI3	ENST00000429122.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000425479.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000335542.8|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr3_-_137851220_137851236	0.0162138	GLI3	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr1_-_866445_866445	0.0160944	GLI3	ENST00000598827.1|AL645608.1|ENSG00000268179.1|Uncharacterized protein
hg19_v2_chr5_-_137090028_137090075	0.0155717	GLI3	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr19_+_18485509_18485556	0.0155537	GLI3	ENST00000597765.1|GDF15|ENSG00000130513.6|growth differentiation factor 15
hg19_v2_chr5_+_179135246_179135327	0.0154659	GLI3	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr7_+_48211048_48211063	0.0152748	GLI3	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr17_+_80517216_80517251	0.0152636	GLI3	ENST00000531030.1|FOXK2|ENSG00000141568.15|forkhead box K2 	ENST00000526383.2|FOXK2|ENSG00000141568.15|forkhead box K2
hg19_v2_chr9_+_124413873_124413969	0.0151401	GLI3	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr20_+_2633269_2633295	0.0151108	GLI3	ENST00000445139.1|NOP56|ENSG00000101361.10|NOP56 ribonucleoprotein
hg19_v2_chr4_-_96470108_96470130	0.0148999	GLI3	ENST00000513796.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr16_-_2908155_2908178	0.0148967	GLI3	ENST00000571228.1|PRSS22|ENSG00000005001.5|protease, serine, 22 	ENST00000161006.3|PRSS22|ENSG00000005001.5|protease, serine, 22
hg19_v2_chr5_-_218251_218330	0.0148439	GLI3	ENST00000296824.3|CCDC127|ENSG00000164366.3|coiled-coil domain containing 127
hg19_v2_chr8_+_29953163_29953190	0.0148132	GLI3	ENST00000518192.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr14_+_74960423_74960479	0.0146329	GLI3	ENST00000556816.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000298818.8|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2 	ENST00000554924.1|ISCA2|ENSG00000165898.9|iron-sulfur cluster assembly 2
hg19_v2_chr3_-_183146369_183146566	0.0145303	GLI3	ENST00000482017.1|MCF2L2|ENSG00000053524.7|MCF.2 cell line derived transforming sequence-like 2
hg19_v2_chr9_+_96051469_96051469	0.0145165	GLI3	ENST00000453718.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2
hg19_v2_chr8_-_145013711_145013786	0.0142532	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr22_+_38201114_38201214	0.0141531	GLI3	ENST00000340857.2|H1F0|ENSG00000189060.4|H1 histone family, member 0
hg19_v2_chr8_+_121137333_121137352	0.014127	GLI3	ENST00000309791.4|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000297848.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000247781.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1
hg19_v2_chr1_-_40349106_40349184	0.0141159	GLI3	ENST00000545233.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537440.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000537223.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000541099.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000441669.2|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000544981.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000316891.5|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1 	ENST00000372818.1|TRIT1|ENSG00000043514.11|tRNA isopentenyltransferase 1
hg19_v2_chr3_-_126236605_126236621	0.0139913	GLI3	ENST00000290868.2|UROC1|ENSG00000159650.4|urocanate hydratase 1
hg19_v2_chr1_+_27114589_27114712	0.0139125	GLI3	ENST00000431541.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000449950.2|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000374145.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr1_-_46152174_46152302	0.0138132	GLI3	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr16_+_3508063_3508086	0.0138077	GLI3	ENST00000576787.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572942.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000576916.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000575076.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572131.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit
hg19_v2_chr6_-_31671058_31671221	0.0137529	GLI3	ENST00000538874.1|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A 	ENST00000395952.3|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A
hg19_v2_chr5_-_138739739_138739793	0.0134548	GLI3	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr18_-_12884150_12884250	0.013445	GLI3	ENST00000591115.1|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000309660.5|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr2_+_234545148_234545161	0.013381	GLI3	ENST00000373445.1|UGT1A10|ENSG00000242515.1|UDP glucuronosyltransferase 1 family, polypeptide A10
hg19_v2_chr2_-_24308051_24308085	0.0133432	GLI3	ENST00000238721.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3 	ENST00000335934.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr5_-_132112907_132112918	0.013182	GLI3	ENST00000458488.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr19_+_17638041_17638055	0.0131749	GLI3	ENST00000601861.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C
hg19_v2_chr16_-_4817129_4817219	0.0130579	GLI3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr14_-_105708942_105709071	0.0129507	GLI3	ENST00000549655.1|BRF1|ENSG00000185024.11|BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
hg19_v2_chr8_+_11141925_11141937	0.0127916	GLI3	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr12_-_54778244_54778378	0.0127397	GLI3	ENST00000549937.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr22_-_45609315_45609422	0.0126564	GLI3	ENST00000443310.3|KIAA0930|ENSG00000100364.14|KIAA0930 	ENST00000424508.1|KIAA0930|ENSG00000100364.14|KIAA0930
hg19_v2_chr6_-_168479839_168479904	0.0126309	GLI3	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr13_-_30683005_30683037	0.0125404	GLI3	ENST00000413591.1|LINC00365|ENSG00000224511.1|long intergenic non-protein coding RNA 365 	ENST00000432770.1|LINC00365|ENSG00000224511.1|long intergenic non-protein coding RNA 365
hg19_v2_chr15_+_40532058_40532072	0.0123944	GLI3	ENST00000260404.4|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr13_+_100258907_100258953	0.012394	GLI3	ENST00000376355.3|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000376360.1|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000444838.2|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000376354.1|CLYBL|ENSG00000125246.11|citrate lyase beta like 	ENST00000339105.4|CLYBL|ENSG00000125246.11|citrate lyase beta like
hg19_v2_chr7_-_99679324_99679371	0.0120924	GLI3	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chrX_+_110924346_110924467	0.0117268	GLI3	ENST00000371979.3|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000251943.4|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000486353.1|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000394780.3|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit 	ENST00000495283.1|ALG13|ENSG00000101901.6|ALG13, UDP-N-acetylglucosaminyltransferase subunit
hg19_v2_chr19_-_10464570_10464754	0.0116514	GLI3	ENST00000529739.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr12_-_57882577_57882614	0.0115596	GLI3	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr2_-_105946491_105946491	0.0115168	GLI3	ENST00000393359.2|TGFBRAP1|ENSG00000135966.8|transforming growth factor, beta receptor associated protein 1
hg19_v2_chr7_+_150688166_150688192	0.0114704	GLI3	ENST00000461406.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr3_-_139199565_139199582	0.0112001	GLI3	ENST00000511956.1|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr11_+_66025091_66025155	0.0111487	GLI3	ENST00000526758.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000440228.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr17_+_27071002_27071103	0.0111197	GLI3	ENST00000262395.5|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000422344.1|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000444415.3|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000262396.6|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4
hg19_v2_chr7_+_89841024_89841094	0.0110634	GLI3	ENST00000394626.1|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr17_-_27139411_27139498	0.0109309	GLI3	ENST00000452648.3|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B
hg19_v2_chr17_+_75450099_75450128	0.0108003	GLI3	ENST00000586433.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr12_-_21927736_21927768	0.0106206	GLI3	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr19_-_35166604_35166604	0.0105803	GLI3	ENST00000601241.1|SCGB2B2|ENSG00000205209.3|secretoglobin, family 2B, member 2
hg19_v2_chr9_-_34620440_34620515	0.0105709	GLI3	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr14_-_92414294_92414355	0.0104598	GLI3	ENST00000554468.1|FBLN5|ENSG00000140092.10|fibulin 5
hg19_v2_chr19_+_57901326_57901385	0.0102682	GLI3	ENST00000596400.1|AC003002.6|ENSG00000269533.1|Uncharacterized protein
hg19_v2_chr1_-_11024258_11024258	0.0102062	GLI3	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr11_+_45868957_45869044	0.0101783	GLI3	ENST00000443527.2|CRY2|ENSG00000121671.7|cryptochrome 2 (photolyase-like)
hg19_v2_chr1_+_40942887_40942997	0.0101462	GLI3	ENST00000372706.1|ZFP69|ENSG00000187815.5|ZFP69 zinc finger protein
hg19_v2_chr16_+_70148230_70148275	0.0101364	GLI3	ENST00000398122.3|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit 	ENST00000568530.1|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit
hg19_v2_chr3_+_238427_238455	0.0100166	GLI3	ENST00000397491.2|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chr9_-_34458531_34458582	0.00998614	GLI3	ENST00000379089.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379087.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379084.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379081.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379080.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000422409.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379078.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000445726.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000297620.4|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A
hg19_v2_chr2_+_232573222_232573249	0.00989935	GLI3	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr17_-_62502399_62502411	0.00942556	GLI3	ENST00000450599.2|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000585060.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr3_-_12200851_12200885	0.00938498	GLI3	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr1_+_87170247_87170276	0.0093846	GLI3	ENST00000370558.4|SH3GLB1|ENSG00000097033.10|SH3-domain GRB2-like endophilin B1
hg19_v2_chr8_+_94710789_94710816	0.00928153	GLI3	ENST00000523475.1|FAM92A1|ENSG00000188343.8|family with sequence similarity 92, member A1
hg19_v2_chr22_+_20905269_20905278	0.0091955	GLI3	ENST00000457322.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr17_+_4710391_4710500	0.00885114	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr11_-_65640325_65640377	0.00880931	GLI3	ENST00000307998.6|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr1_-_151826173_151826192	0.00871559	GLI3	ENST00000368817.5|THEM5|ENSG00000196407.7|thioesterase superfamily member 5
hg19_v2_chr12_+_54943134_54943182	0.00870372	GLI3	ENST00000243052.3|PDE1B|ENSG00000123360.7|phosphodiesterase 1B, calmodulin-dependent
hg19_v2_chr4_+_79567362_79567380	0.00867307	GLI3	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr1_-_20834586_20834656	0.00863585	GLI3	ENST00000264198.3|MUL1|ENSG00000090432.5|mitochondrial E3 ubiquitin protein ligase 1
hg19_v2_chr11_+_65819802_65819871	0.00855835	GLI3	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chr12_-_57882498_57882509	0.00836588	GLI3	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr11_+_46332679_46332708	0.00831075	GLI3	ENST00000530518.1|CREB3L1|ENSG00000157613.6|cAMP responsive element binding protein 3-like 1
hg19_v2_chr8_-_144416965_144417066	0.008301	GLI3	ENST00000523676.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000519591.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000522043.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000329245.4|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial
hg19_v2_chr20_-_36889127_36889174	0.00827844	GLI3	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr12_-_118498911_118498924	0.00820801	GLI3	ENST00000544233.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr19_+_35630022_35630083	0.00814606	GLI3	ENST00000589209.1|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1
hg19_v2_chr17_-_71308119_71308159	0.00796794	GLI3	ENST00000439510.2|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000581014.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000579611.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4
hg19_v2_chr6_+_163148161_163148181	0.00781732	GLI3	ENST00000337019.3|PACRG|ENSG00000112530.7|PARK2 co-regulated 	ENST00000366889.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr10_+_75936444_75936537	0.0077436	GLI3	ENST00000372734.3|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000541550.1|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr1_-_1009683_1009688	0.00772033	GLI3	ENST00000453464.2|RNF223|ENSG00000237330.2|ring finger protein 223
hg19_v2_chr16_-_2318111_2318147	0.00766147	GLI3	ENST00000301730.8|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000564822.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr19_-_2256405_2256428	0.00746402	GLI3	ENST00000300961.6|JSRP1|ENSG00000167476.6|junctional sarcoplasmic reticulum protein 1
hg19_v2_chr11_+_63273811_63273835	0.00731541	GLI3	ENST00000340246.5|LGALS12|ENSG00000133317.10|lectin, galactoside-binding, soluble, 12
hg19_v2_chr1_+_10509971_10510095	0.00719925	GLI3	ENST00000320498.4|CORT|ENSG00000241563.2|cortistatin
hg19_v2_chr4_+_1283639_1283705	0.00717053	GLI3	ENST00000303400.4|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000505177.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000503653.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000264750.6|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000502558.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000452175.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000514708.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher
hg19_v2_chrX_+_151883090_151883174	0.00705846	GLI3	ENST00000370293.2|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000423993.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000447530.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000458057.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000331220.2|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000422085.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000453150.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000409560.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B
hg19_v2_chr16_+_89787937_89787971	0.00698651	GLI3	ENST00000443381.2|ZNF276|ENSG00000158805.7|zinc finger protein 276
hg19_v2_chr3_+_44626446_44626477	0.00689359	GLI3	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr3_-_72496035_72496069	0.00688088	GLI3	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr12_-_49581152_49581241	0.00680201	GLI3	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr3_-_150421752_150421771	0.00645686	GLI3	ENST00000498386.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr3_+_44626359_44626387	0.00634505	GLI3	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr14_+_75469606_75469690	0.00632899	GLI3	ENST00000266126.5|EIF2B2|ENSG00000119718.6|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa
hg19_v2_chr17_+_6659354_6659398	0.00599617	GLI3	ENST00000574907.1|XAF1|ENSG00000132530.12|XIAP associated factor 1
hg19_v2_chr10_-_112064665_112064737	0.00596201	GLI3	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr9_+_131218698_131218750	0.0058944	GLI3	ENST00000434106.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000546203.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000446274.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000421776.2|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000432065.2|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr15_-_64665911_64665980	0.0058641	GLI3	ENST00000606793.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000561349.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000560278.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein
hg19_v2_chr15_+_45694567_45694626	0.00585442	GLI3	ENST00000559860.1|SPATA5L1|ENSG00000171763.13|spermatogenesis associated 5-like 1
hg19_v2_chr11_+_45907177_45907233	0.005588	GLI3	ENST00000241014.2|MAPK8IP1|ENSG00000121653.7|mitogen-activated protein kinase 8 interacting protein 1
hg19_v2_chr17_-_7531121_7531198	0.00553726	GLI3	ENST00000573566.1|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2 	ENST00000269298.5|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2
hg19_v2_chr17_-_58096336_58096413	0.00544033	GLI3	ENST00000587125.1|TBC1D3P1-DHX40P1|ENSG00000267104.1|TBC1D3P1-DHX40P1 readthrough transcribed pseudogene 	ENST00000407042.3|TBC1D3P1-DHX40P1|ENSG00000267104.1|TBC1D3P1-DHX40P1 readthrough transcribed pseudogene
hg19_v2_chr17_+_7788104_7788138	0.00540885	GLI3	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chr2_+_170683942_170683972	0.0053355	GLI3	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr11_+_69931519_69931528	0.00529511	GLI3	ENST00000316296.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000530676.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr19_-_12941215_12941230	0.00524199	GLI3	ENST00000458671.2|RTBDN|ENSG00000132026.9|retbindin
hg19_v2_chr19_-_58238958_58239000	0.00518006	GLI3	ENST00000596939.1|ZNF671|ENSG00000083814.8|zinc finger protein 671 	ENST00000335820.3|ZNF671|ENSG00000083814.8|zinc finger protein 671 	ENST00000317398.6|ZNF671|ENSG00000083814.8|zinc finger protein 671
hg19_v2_chr17_-_40540377_40540481	0.00509424	GLI3	ENST00000404395.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000389272.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000585517.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000588065.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr1_+_180897269_180897295	0.00499434	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr1_+_24117693_24117717	0.00494826	GLI3	ENST00000374503.3|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374502.3|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr17_-_7018128_7018150	0.0048302	GLI3	ENST00000380952.2|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2 	ENST00000254850.7|ASGR2|ENSG00000161944.12|asialoglycoprotein receptor 2
hg19_v2_chr19_+_3721719_3721744	0.00471245	GLI3	ENST00000589378.1|TJP3|ENSG00000105289.10|tight junction protein 3 	ENST00000382008.3|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr11_-_73720276_73720286	0.00466431	GLI3	ENST00000348534.4|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr19_+_50148087_50148275	0.00460562	GLI3	ENST00000601038.1|SCAF1|ENSG00000126461.10|SR-related CTD-associated factor 1 	ENST00000595242.1|SCAF1|ENSG00000126461.10|SR-related CTD-associated factor 1
hg19_v2_chr11_-_3013603_3013621	0.00425268	GLI3	ENST00000380542.4|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4 	ENST00000526115.1|NAP1L4|ENSG00000205531.8|nucleosome assembly protein 1-like 4
hg19_v2_chr1_+_209757051_209757074	0.00422318	GLI3	ENST00000009105.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000423146.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000361322.2|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG
hg19_v2_chr1_-_201084796_201084796	0.00415325	GLI3	ENST00000458416.1|ASCL5|ENSG00000232237.2|achaete-scute family bHLH transcription factor 5
hg19_v2_chr3_+_156008809_156008839	0.00399799	GLI3	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr9_+_131102925_131103015	0.00388784	GLI3	ENST00000372870.1|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4 	ENST00000300456.4|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4
hg19_v2_chr22_-_20004330_20004364	0.003881	GLI3	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr19_-_3869012_3869041	0.00384569	GLI3	ENST00000592398.1|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000262961.4|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000439086.2|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2
hg19_v2_chr4_-_40632844_40632877	0.00344331	GLI3	ENST00000505414.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr13_+_27825706_27825741	0.00342768	GLI3	ENST00000272274.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000319826.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000326092.4|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr11_+_134094508_134094617	0.00329608	GLI3	ENST00000281187.5|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe) 	ENST00000525095.2|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe)
hg19_v2_chr3_-_38691119_38691203	0.00325046	GLI3	ENST00000333535.4|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000413689.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000443581.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000425664.1|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit 	ENST00000451551.2|SCN5A|ENSG00000183873.11|sodium channel, voltage-gated, type V, alpha subunit
hg19_v2_chr10_+_75910960_75910989	0.00320461	GLI3	ENST00000539909.1|ADK|ENSG00000156110.9|adenosine kinase 	ENST00000286621.2|ADK|ENSG00000156110.9|adenosine kinase
hg19_v2_chr17_+_58677539_58677610	0.00316048	GLI3	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr6_-_56112235_56112267	0.00315073	GLI3	ENST00000370817.3|COL21A1|ENSG00000124749.12|collagen, type XXI, alpha 1
hg19_v2_chr15_-_76005170_76005197	0.00308278	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg19_v2_chr6_-_33037019_33037047	0.0030759	GLI3	ENST00000437811.1|HLA-DPA1|ENSG00000231389.3|major histocompatibility complex, class II, DP alpha 1
hg19_v2_chr2_+_173940163_173940183	0.0028874	GLI3	ENST00000539448.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr16_-_89556942_89557020	0.00288064	GLI3	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr1_+_209941827_209941837	0.00282042	GLI3	ENST00000367023.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr11_+_13690249_13690274	0.00271174	GLI3	ENST00000532701.1|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr16_-_52640834_52640847	0.0022128	GLI3	ENST00000510238.3|CASC16|ENSG00000249231.3|cancer susceptibility candidate 16 (non-protein coding)
hg19_v2_chr3_-_53080047_53080103	0.00205051	GLI3	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr16_+_67381289_67381306	0.0020487	GLI3	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr3_-_12705600_12705725	0.00199856	GLI3	ENST00000542177.1|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000442415.2|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000251849.4|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1
hg19_v2_chr18_-_60987220_60987386	0.00185818	GLI3	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr1_+_19923454_19923561	0.00181468	GLI3	ENST00000602662.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough 	ENST00000322753.6|MINOS1|ENSG00000173436.9|mitochondrial inner membrane organizing system 1 	ENST00000602293.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough
hg19_v2_chr19_-_14064114_14064204	0.0015982	GLI3	ENST00000585607.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538517.2|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000587458.1|PODNL1|ENSG00000132000.7|podocan-like 1 	ENST00000538371.2|PODNL1|ENSG00000132000.7|podocan-like 1
hg19_v2_chr17_-_79359154_79359164	0.00156073	GLI3	ENST00000572077.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr11_-_1785139_1785222	0.00154961	GLI3	ENST00000236671.2|CTSD|ENSG00000117984.8|cathepsin D
hg19_v2_chr1_-_104238912_104238912	0.00143966	GLI3	ENST00000330330.5|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr5_-_6633397_6633445	0.00143905	GLI3	ENST00000264670.6|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2 	ENST00000539938.1|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2
hg19_v2_chr11_-_111784005_111784071	0.00141467	GLI3	ENST00000527899.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr1_-_201368707_201368760	0.00133886	GLI3	ENST00000391967.2|LAD1|ENSG00000159166.9|ladinin 1
hg19_v2_chr6_-_75994025_75994057	0.00133535	GLI3	ENST00000518161.1|TMEM30A|ENSG00000112697.11|transmembrane protein 30A
hg19_v2_chr21_-_47604318_47604390	0.00130113	GLI3	ENST00000291672.5|SPATC1L|ENSG00000160284.10|spermatogenesis and centriole associated 1-like 	ENST00000330205.6|SPATC1L|ENSG00000160284.10|spermatogenesis and centriole associated 1-like
hg19_v2_chr7_-_4923259_4923310	0.00116889	GLI3	ENST00000536091.1|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr16_+_29818857_29819023	0.0009832	GLI3	ENST00000567444.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr11_-_13484713_13484850	0.000908787	GLI3	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr11_+_125464758_125464858	0.000908706	GLI3	ENST00000529886.1|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr17_-_1420182_1420279	0.00065827	GLI3	ENST00000421807.2|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr16_-_67517716_67517716	0.000505792	GLI3	ENST00000290953.2|AGRP|ENSG00000159723.4|agouti related protein homolog (mouse)
hg19_v2_chr21_-_27107344_27107357	0.000487933	GLI3	ENST00000457143.2|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr2_+_232826211_232826293	5.16173e-05	GLI3	ENST00000325385.7|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2 	ENST00000360410.4|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2
