hg19_v2_chr4_+_174089904_174089921	1.29472	GCAGCAU	ENST00000265000.4|GALNT7|ENSG00000109586.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
hg19_v2_chr1_+_203274639_203274664	1.07883	GCAGCAU	ENST00000290551.4|BTG2|ENSG00000159388.5|BTG family, member 2
hg19_v2_chr4_-_76598296_76598318	1.017	GCAGCAU	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr12_-_27167233_27167367	0.83639	GCAGCAU	ENST00000535819.1|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3 	ENST00000543803.1|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3 	ENST00000535423.1|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3 	ENST00000539741.1|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3 	ENST00000343028.4|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3 	ENST00000545600.1|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3 	ENST00000543088.1|TM7SF3|ENSG00000064115.6|transmembrane 7 superfamily member 3
hg19_v2_chr5_+_76506706_76506787	0.817877	GCAGCAU	ENST00000340978.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000346042.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000264917.5|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000342343.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000333194.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B
hg19_v2_chr7_+_99613195_99613206	0.793353	GCAGCAU	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr12_+_53399942_53400071	0.756356	GCAGCAU	ENST00000262056.9|EIF4B|ENSG00000063046.13|eukaryotic translation initiation factor 4B
hg19_v2_chr10_-_119134918_119134986	0.728819	GCAGCAU	ENST00000334464.5|PDZD8|ENSG00000165650.7|PDZ domain containing 8
hg19_v2_chr13_+_93879085_93879136	0.672352	GCAGCAU	ENST00000377047.4|GPC6|ENSG00000183098.6|glypican 6
hg19_v2_chr5_+_82767284_82767310	0.661016	GCAGCAU	ENST00000265077.3|VCAN|ENSG00000038427.11|versican
hg19_v2_chr15_-_41624685_41624819	0.656974	GCAGCAU	ENST00000560640.1|OIP5|ENSG00000104147.4|Opa interacting protein 5 	ENST00000220514.3|OIP5|ENSG00000104147.4|Opa interacting protein 5
hg19_v2_chr8_+_87354945_87355012	0.641618	GCAGCAU	ENST00000517970.1|WWP1|ENSG00000123124.9|WW domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr9_+_91003271_91003386	0.640207	GCAGCAU	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chr3_-_15374033_15374136	0.635551	GCAGCAU	ENST00000253688.5|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated) 	ENST00000383791.3|SH3BP5|ENSG00000131370.11|SH3-domain binding protein 5 (BTK-associated)
hg19_v2_chr10_+_88718397_88718424	0.621696	GCAGCAU	ENST00000372017.3|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr17_-_56595196_56595266	0.605187	GCAGCAU	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr1_-_108507631_108507809	0.603003	GCAGCAU	ENST00000527011.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000370056.4|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chrX_+_72783026_72783049	0.60125	GCAGCAU	ENST00000373504.6|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1 	ENST00000373502.5|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1
hg19_v2_chr11_+_77300669_77300714	0.599658	GCAGCAU	ENST00000313578.3|AQP11|ENSG00000178301.3|aquaporin 11
hg19_v2_chr3_+_30648066_30648167	0.584673	GCAGCAU	ENST00000359013.4|TGFBR2|ENSG00000163513.13|transforming growth factor, beta receptor II (70/80kDa)
hg19_v2_chr5_+_67511524_67511628	0.571726	GCAGCAU	ENST00000521381.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 	ENST00000521657.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr22_+_32340481_32340510	0.553551	GCAGCAU	ENST00000397492.1|YWHAH|ENSG00000128245.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta
hg19_v2_chr1_-_146644122_146644176	0.540044	GCAGCAU	ENST00000254101.3|PRKAB2|ENSG00000131791.6|protein kinase, AMP-activated, beta 2 non-catalytic subunit
hg19_v2_chr1_+_78470530_78470551	0.534902	GCAGCAU	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr4_+_57774042_57774114	0.518748	GCAGCAU	ENST00000309042.7|REST|ENSG00000084093.11|RE1-silencing transcription factor
hg19_v2_chr11_-_119599794_119599857	0.514603	GCAGCAU	ENST00000264025.3|PVRL1|ENSG00000110400.6|poliovirus receptor-related 1 (herpesvirus entry mediator C)
hg19_v2_chr1_+_26798955_26799010	0.513269	GCAGCAU	ENST00000361427.5|HMGN2|ENSG00000198830.6|high mobility group nucleosomal binding domain 2
hg19_v2_chr13_-_30424821_30424847	0.500809	GCAGCAU	ENST00000380680.4|UBL3|ENSG00000122042.9|ubiquitin-like 3
hg19_v2_chr14_+_57046500_57046529	0.498798	GCAGCAU	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr15_-_49447835_49447858	0.493331	GCAGCAU	ENST00000388901.5|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2 	ENST00000299259.6|COPS2|ENSG00000166200.10|COP9 signalosome subunit 2
hg19_v2_chrX_-_131352152_131352204	0.492536	GCAGCAU	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chrX_-_20284958_20285039	0.489667	GCAGCAU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr12_-_22697343_22697500	0.487314	GCAGCAU	ENST00000446597.1|C2CD5|ENSG00000111731.8|C2 calcium-dependent domain containing 5 	ENST00000536386.1|C2CD5|ENSG00000111731.8|C2 calcium-dependent domain containing 5 	ENST00000396028.2|C2CD5|ENSG00000111731.8|C2 calcium-dependent domain containing 5 	ENST00000545552.1|C2CD5|ENSG00000111731.8|C2 calcium-dependent domain containing 5 	ENST00000544930.1|C2CD5|ENSG00000111731.8|C2 calcium-dependent domain containing 5 	ENST00000333957.4|C2CD5|ENSG00000111731.8|C2 calcium-dependent domain containing 5
hg19_v2_chr10_+_54074033_54074056	0.483611	GCAGCAU	ENST00000373970.3|DKK1|ENSG00000107984.5|dickkopf WNT signaling pathway inhibitor 1
hg19_v2_chr1_+_61547894_61547980	0.474465	GCAGCAU	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr4_+_140222609_140222742	0.47212	GCAGCAU	ENST00000296543.5|NAA15|ENSG00000164134.8|N(alpha)-acetyltransferase 15, NatA auxiliary subunit 	ENST00000398947.1|NAA15|ENSG00000164134.8|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
hg19_v2_chr20_-_13765526_13765578	0.468965	GCAGCAU	ENST00000202816.1|ESF1|ENSG00000089048.10|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
hg19_v2_chr7_-_95225768_95225967	0.46765	GCAGCAU	ENST00000005178.5|PDK4|ENSG00000004799.7|pyruvate dehydrogenase kinase, isozyme 4
hg19_v2_chr12_+_8185288_8185339	0.467431	GCAGCAU	ENST00000162391.3|FOXJ2|ENSG00000065970.4|forkhead box J2
hg19_v2_chr1_+_109792641_109792641	0.467198	GCAGCAU	ENST00000271332.3|CELSR2|ENSG00000143126.7|cadherin, EGF LAG seven-pass G-type receptor 2
hg19_v2_chr12_-_39837192_39837206	0.462848	GCAGCAU	ENST00000361961.3|KIF21A|ENSG00000139116.13|kinesin family member 21A 	ENST00000395670.3|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chr2_-_122042770_122042785	0.459836	GCAGCAU	ENST00000263707.5|TFCP2L1|ENSG00000115112.7|transcription factor CP2-like 1
hg19_v2_chr10_-_119806085_119806114	0.448848	GCAGCAU	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr15_-_34502278_34502318	0.446436	GCAGCAU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr9_+_92219919_92219953	0.433847	GCAGCAU	ENST00000252506.6|GADD45G|ENSG00000130222.6|growth arrest and DNA-damage-inducible, gamma 	ENST00000375769.1|GADD45G|ENSG00000130222.6|growth arrest and DNA-damage-inducible, gamma
hg19_v2_chr14_+_32546485_32546532	0.427442	GCAGCAU	ENST00000345122.3|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000432921.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000433497.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr1_+_93913713_93913839	0.422683	GCAGCAU	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr12_+_104359576_104359601	0.41742	GCAGCAU	ENST00000392872.3|TDG|ENSG00000139372.10|thymine-DNA glycosylase 	ENST00000436021.2|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr3_-_123304017_123304040	0.416771	GCAGCAU	ENST00000383657.5|PTPLB|ENSG00000206527.5|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
hg19_v2_chr7_-_11871815_11871831	0.400801	GCAGCAU	ENST00000423059.4|THSD7A|ENSG00000005108.11|thrombospondin, type I, domain containing 7A
hg19_v2_chr10_-_88854518_88854634	0.400502	GCAGCAU	ENST00000277865.4|GLUD1|ENSG00000148672.7|glutamate dehydrogenase 1
hg19_v2_chr6_+_127439749_127439829	0.400371	GCAGCAU	ENST00000356698.4|RSPO3|ENSG00000146374.9|R-spondin 3
hg19_v2_chr3_-_98620500_98620547	0.395146	GCAGCAU	ENST00000326840.6|DCBLD2|ENSG00000057019.11|discoidin, CUB and LCCL domain containing 2
hg19_v2_chr20_+_8112824_8112925	0.394201	GCAGCAU	ENST00000378641.3|PLCB1|ENSG00000182621.12|phospholipase C, beta 1 (phosphoinositide-specific)
hg19_v2_chr7_-_92463210_92463231	0.393856	GCAGCAU	ENST00000265734.4|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr14_-_57735528_57735726	0.392376	GCAGCAU	ENST00000340918.7|EXOC5|ENSG00000070367.11|exocyst complex component 5 	ENST00000413566.2|EXOC5|ENSG00000070367.11|exocyst complex component 5
hg19_v2_chr12_-_81331697_81331733	0.391718	GCAGCAU	ENST00000552864.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr1_+_233463507_233463520	0.387565	GCAGCAU	ENST00000366623.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4  	ENST00000366624.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4
hg19_v2_chr22_-_41252962_41253026	0.386558	GCAGCAU	ENST00000216218.3|ST13|ENSG00000100380.8|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)
hg19_v2_chr12_-_31479045_31479074	0.377852	GCAGCAU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr21_-_16437255_16437340	0.37504	GCAGCAU	ENST00000400199.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1 	ENST00000400202.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chrX_-_41782249_41782287	0.372933	GCAGCAU	ENST00000442742.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000421587.2|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000378166.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000318588.9|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENST00000361962.4|CASK|ENSG00000147044.16|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
hg19_v2_chr6_+_34433844_34433921	0.371798	GCAGCAU	ENST00000244458.2|PACSIN1|ENSG00000124507.6|protein kinase C and casein kinase substrate in neurons 1 	ENST00000374043.2|PACSIN1|ENSG00000124507.6|protein kinase C and casein kinase substrate in neurons 1
hg19_v2_chr14_-_23451845_23451856	0.362811	GCAGCAU	ENST00000262713.2|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr3_+_179065474_179065530	0.362726	GCAGCAU	ENST00000471841.1|MFN1|ENSG00000171109.14|mitofusin 1 	ENST00000280653.7|MFN1|ENSG00000171109.14|mitofusin 1
hg19_v2_chr1_+_26438289_26438352	0.356821	GCAGCAU	ENST00000374271.4|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like 	ENST00000374269.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr7_-_55640176_55640228	0.353384	GCAGCAU	ENST00000285279.5|VOPP1|ENSG00000154978.8|vesicular, overexpressed in cancer, prosurvival protein 1
hg19_v2_chr13_-_76056250_76056280	0.35239	GCAGCAU	ENST00000377636.3|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000431480.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000377625.2|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4 	ENST00000425511.1|TBC1D4|ENSG00000136111.8|TBC1 domain family, member 4
hg19_v2_chr1_-_85666688_85666729	0.350945	GCAGCAU	ENST00000341460.5|SYDE2|ENSG00000097096.8|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
hg19_v2_chr10_+_98592009_98592061	0.3502	GCAGCAU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr15_+_69706585_69706641	0.349649	GCAGCAU	ENST00000559279.1|KIF23|ENSG00000137807.9|kinesin family member 23 	ENST00000395392.2|KIF23|ENSG00000137807.9|kinesin family member 23
hg19_v2_chr16_-_90038866_90038942	0.345211	GCAGCAU	ENST00000314994.3|CENPBD1|ENSG00000177946.4|CENPB DNA-binding domains containing 1
hg19_v2_chr14_+_53196872_53196959	0.34303	GCAGCAU	ENST00000442123.2|STYX|ENSG00000198252.7|serine/threonine/tyrosine interacting protein 	ENST00000354586.4|STYX|ENSG00000198252.7|serine/threonine/tyrosine interacting protein
hg19_v2_chr17_-_45266542_45266683	0.33578	GCAGCAU	ENST00000531206.1|CDC27|ENSG00000004897.7|cell division cycle 27 	ENST00000527547.1|CDC27|ENSG00000004897.7|cell division cycle 27 	ENST00000446365.2|CDC27|ENSG00000004897.7|cell division cycle 27 	ENST00000575483.1|CDC27|ENSG00000004897.7|cell division cycle 27 	ENST00000066544.3|CDC27|ENSG00000004897.7|cell division cycle 27
hg19_v2_chr12_-_120884175_120884218	0.335197	GCAGCAU	ENST00000546954.1|TRIAP1|ENSG00000170855.3|TP53 regulated inhibitor of apoptosis 1
hg19_v2_chr20_+_24449821_24449843	0.326121	GCAGCAU	ENST00000376862.3|SYNDIG1|ENSG00000101463.5|synapse differentiation inducing 1
hg19_v2_chr12_+_20522179_20522203	0.31967	GCAGCAU	ENST00000359062.3|PDE3A|ENSG00000172572.6|phosphodiesterase 3A, cGMP-inhibited
hg19_v2_chr5_-_132299313_132299334	0.318594	GCAGCAU	ENST00000265343.5|AFF4|ENSG00000072364.8|AF4/FMR2 family, member 4
hg19_v2_chr7_-_82073109_82073150	0.314697	GCAGCAU	ENST00000356860.3|CACNA2D1|ENSG00000153956.11|calcium channel, voltage-dependent, alpha 2/delta subunit 1
hg19_v2_chr2_-_165697920_165697963	0.311625	GCAGCAU	ENST00000342193.4|COBLL1|ENSG00000082438.11|cordon-bleu WH2 repeat protein-like 1 	ENST00000375458.2|COBLL1|ENSG00000082438.11|cordon-bleu WH2 repeat protein-like 1
hg19_v2_chr1_-_70671216_70671303	0.30924	GCAGCAU	ENST00000370952.3|LRRC40|ENSG00000066557.5|leucine rich repeat containing 40
hg19_v2_chr18_+_72922710_72922733	0.309044	GCAGCAU	ENST00000322038.5|TSHZ1|ENSG00000179981.9|teashirt zinc finger homeobox 1
hg19_v2_chr3_-_176914238_176914277	0.308792	GCAGCAU	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr4_+_124320665_124320702	0.306693	GCAGCAU	ENST00000394339.2|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr4_+_108745711_108745726	0.306453	GCAGCAU	ENST00000394684.4|SGMS2|ENSG00000164023.10|sphingomyelin synthase 2
hg19_v2_chr7_-_66460563_66460605	0.296726	GCAGCAU	ENST00000246868.2|SBDS|ENSG00000126524.5|Shwachman-Bodian-Diamond syndrome
hg19_v2_chr11_+_14665263_14665274	0.292158	GCAGCAU	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr10_+_95653687_95653765	0.291323	GCAGCAU	ENST00000371408.3|SLC35G1|ENSG00000176273.10|solute carrier family 35, member G1 	ENST00000427197.1|SLC35G1|ENSG00000176273.10|solute carrier family 35, member G1
hg19_v2_chr7_+_116502527_116502558	0.29003	GCAGCAU	ENST00000361183.3|CAPZA2|ENSG00000198898.8|capping protein (actin filament) muscle Z-line, alpha 2
hg19_v2_chr1_-_150849208_150849244	0.288398	GCAGCAU	ENST00000358595.5|ARNT|ENSG00000143437.16|aryl hydrocarbon receptor nuclear translocator
hg19_v2_chr8_-_124286735_124286773	0.288175	GCAGCAU	ENST00000395571.3|ZHX1|ENSG00000165156.10|zinc fingers and homeoboxes 1
hg19_v2_chr4_+_172734548_172734654	0.287231	GCAGCAU	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr1_-_92351769_92351787	0.285527	GCAGCAU	ENST00000212355.4|TGFBR3|ENSG00000069702.6|transforming growth factor, beta receptor III
hg19_v2_chr15_+_89631381_89631391	0.284982	GCAGCAU	ENST00000352732.5|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr2_-_172017343_172017391	0.283419	GCAGCAU	ENST00000431350.2|TLK1|ENSG00000198586.9|tousled-like kinase 1 	ENST00000360843.3|TLK1|ENSG00000198586.9|tousled-like kinase 1
hg19_v2_chr7_+_94285637_94285689	0.277853	GCAGCAU	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chr12_+_68042495_68042508	0.275814	GCAGCAU	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr3_+_88188254_88188254	0.273682	GCAGCAU	ENST00000309495.5|ZNF654|ENSG00000175105.5|zinc finger protein 654
hg19_v2_chr18_+_19321281_19321334	0.271439	GCAGCAU	ENST00000261537.6|MIB1|ENSG00000101752.7|mindbomb E3 ubiquitin protein ligase 1
hg19_v2_chr5_-_162887071_162887166	0.27086	GCAGCAU	ENST00000302764.4|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr12_-_44200052_44200136	0.270561	GCAGCAU	ENST00000548315.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000552521.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000546662.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000548403.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1 	ENST00000546506.1|TWF1|ENSG00000151239.9|twinfilin actin-binding protein 1
hg19_v2_chr9_+_33817461_33817565	0.269886	GCAGCAU	ENST00000263228.3|UBE2R2|ENSG00000107341.4|ubiquitin-conjugating enzyme E2R 2
hg19_v2_chr14_-_53258314_53258418	0.269064	GCAGCAU	ENST00000216410.3|GNPNAT1|ENSG00000100522.4|glucosamine-phosphate N-acetyltransferase 1 	ENST00000557604.1|GNPNAT1|ENSG00000100522.4|glucosamine-phosphate N-acetyltransferase 1
hg19_v2_chr3_-_88108192_88108203	0.268636	GCAGCAU	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr1_-_36235529_36235543	0.267912	GCAGCAU	ENST00000318121.3|CLSPN|ENSG00000092853.9|claspin 	ENST00000373220.3|CLSPN|ENSG00000092853.9|claspin 	ENST00000520551.1|CLSPN|ENSG00000092853.9|claspin
hg19_v2_chr8_-_66546439_66546451	0.267552	GCAGCAU	ENST00000276569.3|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr11_+_64073699_64073918	0.266791	GCAGCAU	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chrX_-_109561294_109561467	0.266395	GCAGCAU	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr1_+_78245303_78245351	0.26618	GCAGCAU	ENST00000370791.3|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A 	ENST00000443751.2|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A
hg19_v2_chr17_+_56160768_56160786	0.262948	GCAGCAU	ENST00000579991.2|DYNLL2|ENSG00000264364.2|dynein, light chain, LC8-type 2
hg19_v2_chr10_+_92980517_92980550	0.25891	GCAGCAU	ENST00000336126.5|PCGF5|ENSG00000180628.10|polycomb group ring finger 5
hg19_v2_chrX_-_34675391_34675411	0.256548	GCAGCAU	ENST00000275954.3|TMEM47|ENSG00000147027.3|transmembrane protein 47
hg19_v2_chr17_-_46623441_46623441	0.255517	GCAGCAU	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr3_+_152017181_152017229	0.25068	GCAGCAU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr8_+_120885949_120885976	0.249185	GCAGCAU	ENST00000523492.1|DEPTOR|ENSG00000155792.5|DEP domain containing MTOR-interacting protein 	ENST00000286234.5|DEPTOR|ENSG00000155792.5|DEP domain containing MTOR-interacting protein
hg19_v2_chr2_-_33824336_33824378	0.245343	GCAGCAU	ENST00000431950.1|FAM98A|ENSG00000119812.14|family with sequence similarity 98, member A 	ENST00000403368.1|FAM98A|ENSG00000119812.14|family with sequence similarity 98, member A 	ENST00000441530.2|FAM98A|ENSG00000119812.14|family with sequence similarity 98, member A
hg19_v2_chrX_+_64708615_64708615	0.240602	GCAGCAU	ENST00000338957.4|ZC3H12B|ENSG00000102053.11|zinc finger CCCH-type containing 12B 	ENST00000423889.3|ZC3H12B|ENSG00000102053.11|zinc finger CCCH-type containing 12B
hg19_v2_chr15_+_59730348_59730435	0.240176	GCAGCAU	ENST00000288228.5|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A 	ENST00000559628.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A 	ENST00000557914.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A 	ENST00000560474.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr14_-_89259080_89259096	0.235581	GCAGCAU	ENST00000554922.1|EML5|ENSG00000165521.11|echinoderm microtubule associated protein like 5 	ENST00000352093.5|EML5|ENSG00000165521.11|echinoderm microtubule associated protein like 5
hg19_v2_chr20_+_30865429_30865480	0.233449	GCAGCAU	ENST00000375712.3|KIF3B|ENSG00000101350.6|kinesin family member 3B
hg19_v2_chr17_-_28618948_28619023	0.233367	GCAGCAU	ENST00000261714.6|BLMH|ENSG00000108578.10|bleomycin hydrolase
hg19_v2_chr10_-_79686284_79686527	0.231175	GCAGCAU	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chr11_+_76571911_76571991	0.230264	GCAGCAU	ENST00000534206.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000532485.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000526597.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000533873.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3 	ENST00000538157.1|ACER3|ENSG00000078124.7|alkaline ceramidase 3
hg19_v2_chr11_+_118230287_118230361	0.223824	GCAGCAU	ENST00000252108.3|UBE4A|ENSG00000110344.5|ubiquitination factor E4A 	ENST00000431736.2|UBE4A|ENSG00000110344.5|ubiquitination factor E4A
hg19_v2_chr7_+_30323923_30324060	0.22182	GCAGCAU	ENST00000323037.4|ZNRF2|ENSG00000180233.9|zinc and ring finger 2
hg19_v2_chr11_+_59522532_59522595	0.220477	GCAGCAU	ENST00000337979.4|STX3|ENSG00000166900.10|syntaxin 3 	ENST00000535361.1|STX3|ENSG00000166900.10|syntaxin 3
hg19_v2_chr2_-_55844720_55844772	0.219747	GCAGCAU	ENST00000345102.5|SMEK2|ENSG00000138041.11|SMEK homolog 2, suppressor of mek1 (Dictyostelium) 	ENST00000272313.5|SMEK2|ENSG00000138041.11|SMEK homolog 2, suppressor of mek1 (Dictyostelium) 	ENST00000407823.3|SMEK2|ENSG00000138041.11|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
hg19_v2_chr1_+_64239657_64239724	0.218884	GCAGCAU	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr9_-_113342160_113342214	0.214428	GCAGCAU	ENST00000401783.2|SVEP1|ENSG00000165124.13|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 	ENST00000374461.1|SVEP1|ENSG00000165124.13|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
hg19_v2_chr14_+_70078303_70078321	0.213867	GCAGCAU	ENST00000342745.4|KIAA0247|ENSG00000100647.7|KIAA0247
hg19_v2_chr5_-_98262240_98262240	0.213826	GCAGCAU	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr1_-_157108130_157108173	0.213037	GCAGCAU	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr17_+_53342311_53342400	0.213021	GCAGCAU	ENST00000226067.5|HLF|ENSG00000108924.9|hepatic leukemia factor
hg19_v2_chr12_-_65146636_65146651	0.21295	GCAGCAU	ENST00000418919.2|GNS|ENSG00000135677.6|glucosamine (N-acetyl)-6-sulfatase
hg19_v2_chr5_+_102455853_102455961	0.205922	GCAGCAU	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr17_+_55333876_55333939	0.20163	GCAGCAU	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr17_+_29421900_29421951	0.198385	GCAGCAU	ENST00000358273.4|NF1|ENSG00000196712.12|neurofibromin 1 	ENST00000356175.3|NF1|ENSG00000196712.12|neurofibromin 1
hg19_v2_chr12_+_52203789_52203789	0.197362	GCAGCAU	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr6_+_155054459_155054561	0.194505	GCAGCAU	ENST00000367178.3|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8 	ENST00000417268.1|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8 	ENST00000367186.4|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8
hg19_v2_chrX_+_134478706_134478736	0.194325	GCAGCAU	ENST00000370761.3|ZNF449|ENSG00000173275.8|zinc finger protein 449 	ENST00000339249.4|ZNF449|ENSG00000173275.8|zinc finger protein 449 	ENST00000370760.3|ZNF449|ENSG00000173275.8|zinc finger protein 449
hg19_v2_chr1_-_173991434_173991556	0.194202	GCAGCAU	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr17_-_3794021_3794042	0.19399	GCAGCAU	ENST00000381769.2|CAMKK1|ENSG00000004660.10|calcium/calmodulin-dependent protein kinase kinase 1, alpha
hg19_v2_chr4_+_106629929_106629982	0.191708	GCAGCAU	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr8_+_96145974_96146041	0.190592	GCAGCAU	ENST00000315367.3|PLEKHF2|ENSG00000175895.3|pleckstrin homology domain containing, family F (with FYVE domain) member 2
hg19_v2_chr12_+_50451331_50451429	0.189325	GCAGCAU	ENST00000228468.4|ASIC1|ENSG00000110881.7|acid-sensing (proton-gated) ion channel 1
hg19_v2_chr1_-_39325431_39325495	0.187226	GCAGCAU	ENST00000373001.3|RRAGC|ENSG00000116954.7|Ras-related GTP binding C
hg19_v2_chr11_-_129062093_129062184	0.186895	GCAGCAU	ENST00000310343.9|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chr14_+_96829814_96829869	0.18621	GCAGCAU	ENST00000555181.1|GSKIP|ENSG00000100744.10|GSK3B interacting protein 	ENST00000553699.1|GSKIP|ENSG00000100744.10|GSK3B interacting protein 	ENST00000554182.1|GSKIP|ENSG00000100744.10|GSK3B interacting protein
hg19_v2_chr8_-_12612962_12613049	0.186095	GCAGCAU	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr2_+_110371905_110371950	0.18093	GCAGCAU	ENST00000356454.3|SOWAHC|ENSG00000198142.3|sosondowah ankyrin repeat domain family member C
hg19_v2_chr11_-_102962929_102962944	0.178259	GCAGCAU	ENST00000260247.5|DCUN1D5|ENSG00000137692.7|DCN1, defective in cullin neddylation 1, domain containing 5
hg19_v2_chr9_-_123639600_123639627	0.177356	GCAGCAU	ENST00000373896.3|PHF19|ENSG00000119403.9|PHD finger protein 19
hg19_v2_chrX_-_70288234_70288291	0.176994	GCAGCAU	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr5_-_100238956_100238994	0.176251	GCAGCAU	ENST00000231461.5|ST8SIA4|ENSG00000113532.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
hg19_v2_chr10_+_89622870_89622870	0.175923	GCAGCAU	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr6_-_117923520_117923529	0.175295	GCAGCAU	ENST00000368498.2|GOPC|ENSG00000047932.9|golgi-associated PDZ and coiled-coil motif containing
hg19_v2_chr1_+_100435315_100435345	0.172809	GCAGCAU	ENST00000370155.3|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 	ENST00000465289.1|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
hg19_v2_chr4_+_6784401_6784510	0.171764	GCAGCAU	ENST00000425103.1|KIAA0232|ENSG00000170871.7|KIAA0232 	ENST00000307659.5|KIAA0232|ENSG00000170871.7|KIAA0232
hg19_v2_chr1_-_205601064_205601090	0.170219	GCAGCAU	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr5_-_137368708_137368721	0.169596	GCAGCAU	ENST00000033079.3|FAM13B|ENSG00000031003.6|family with sequence similarity 13, member B
hg19_v2_chr8_-_81083731_81083813	0.165912	GCAGCAU	ENST00000379096.5|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr13_-_50367057_50367142	0.16581	GCAGCAU	ENST00000261667.3|KPNA3|ENSG00000102753.5|karyopherin alpha 3 (importin alpha 4)
hg19_v2_chr15_+_41952591_41952672	0.1649	GCAGCAU	ENST00000566718.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000219905.7|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000389936.4|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000545763.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein
hg19_v2_chr1_+_110091189_110091268	0.158447	GCAGCAU	ENST00000369851.4|GNAI3|ENSG00000065135.7|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3
hg19_v2_chr15_+_49715293_49715448	0.157723	GCAGCAU	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr17_+_38219063_38219154	0.156474	GCAGCAU	ENST00000584985.1|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000264637.4|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000450525.2|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha
hg19_v2_chr6_+_71276596_71276649	0.154095	GCAGCAU	ENST00000370474.3|C6orf57|ENSG00000154079.5|chromosome 6 open reading frame 57
hg19_v2_chrX_-_102757802_102757810	0.152911	GCAGCAU	ENST00000372633.1|RAB40A|ENSG00000172476.3|RAB40A, member RAS oncogene family
hg19_v2_chr20_-_50159198_50159299	0.14877	GCAGCAU	ENST00000371564.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000396009.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000610033.1|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
hg19_v2_chr5_+_5422778_5422841	0.147452	GCAGCAU	ENST00000296564.7|KIAA0947|ENSG00000164151.7|KIAA0947
hg19_v2_chr12_+_105501487_105501562	0.147391	GCAGCAU	ENST00000332180.5|KIAA1033|ENSG00000136051.9|KIAA1033
hg19_v2_chr14_+_55518349_55518423	0.145519	GCAGCAU	ENST00000395468.4|MAPK1IP1L|ENSG00000168175.10|mitogen-activated protein kinase 1 interacting protein 1-like
hg19_v2_chr4_+_77356248_77356295	0.142179	GCAGCAU	ENST00000296043.6|SHROOM3|ENSG00000138771.10|shroom family member 3
hg19_v2_chr9_-_111696340_111696421	0.141364	GCAGCAU	ENST00000374647.5|IKBKAP|ENSG00000070061.10|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein
hg19_v2_chr8_+_38614807_38614851	0.141202	GCAGCAU	ENST00000330691.6|TACC1|ENSG00000147526.15|transforming, acidic coiled-coil containing protein 1 	ENST00000348567.4|TACC1|ENSG00000147526.15|transforming, acidic coiled-coil containing protein 1
hg19_v2_chr11_+_117014983_117015017	0.140888	GCAGCAU	ENST00000527958.1|PAFAH1B2|ENSG00000168092.9|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) 	ENST00000419197.2|PAFAH1B2|ENSG00000168092.9|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) 	ENST00000304808.6|PAFAH1B2|ENSG00000168092.9|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) 	ENST00000529887.2|PAFAH1B2|ENSG00000168092.9|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)
hg19_v2_chr1_-_240775447_240775462	0.139362	GCAGCAU	ENST00000318160.4|GREM2|ENSG00000180875.4|gremlin 2, DAN family BMP antagonist
hg19_v2_chr2_+_170440844_170440897	0.138286	GCAGCAU	ENST00000260970.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000433207.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000409714.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000462903.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G)
hg19_v2_chr18_+_2655692_2655737	0.138021	GCAGCAU	ENST00000320876.6|SMCHD1|ENSG00000101596.10|structural maintenance of chromosomes flexible hinge domain containing 1
hg19_v2_chr17_-_65241281_65241326	0.137464	GCAGCAU	ENST00000358691.5|HELZ|ENSG00000198265.7|helicase with zinc finger 	ENST00000580168.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr1_-_171711387_171711420	0.137168	GCAGCAU	ENST00000236192.7|VAMP4|ENSG00000117533.10|vesicle-associated membrane protein 4
hg19_v2_chr20_+_33814457_33814506	0.136106	GCAGCAU	ENST00000246186.6|MMP24|ENSG00000125966.8|matrix metallopeptidase 24 (membrane-inserted)
hg19_v2_chr6_+_134274322_134274342	0.134603	GCAGCAU	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr4_-_25864581_25864621	0.133646	GCAGCAU	ENST00000399878.3|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr1_-_151300160_151300196	0.133213	GCAGCAU	ENST00000368874.4|PI4KB|ENSG00000143393.12|phosphatidylinositol 4-kinase, catalytic, beta
hg19_v2_chr9_-_95055956_95056004	0.127881	GCAGCAU	ENST00000375629.3|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase 	ENST00000447699.2|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase 	ENST00000375643.3|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase 	ENST00000395554.3|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase
hg19_v2_chr3_+_57261743_57261824	0.126691	GCAGCAU	ENST00000288266.3|APPL1|ENSG00000157500.6|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
hg19_v2_chr5_+_172483347_172483407	0.125382	GCAGCAU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr4_+_52709229_52709345	0.123246	GCAGCAU	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr9_+_15553055_15553101	0.122484	GCAGCAU	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr12_+_22778009_22778112	0.122157	GCAGCAU	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr12_-_102513843_102513908	0.121622	GCAGCAU	ENST00000551744.2|NUP37|ENSG00000075188.4|nucleoporin 37kDa 	ENST00000552283.1|NUP37|ENSG00000075188.4|nucleoporin 37kDa
hg19_v2_chr8_+_74206829_74206847	0.115038	GCAGCAU	ENST00000240285.5|RDH10|ENSG00000121039.5|retinol dehydrogenase 10 (all-trans)
hg19_v2_chr3_+_133293278_133293492	0.114575	GCAGCAU	ENST00000508481.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000420115.2|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000504867.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000507408.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000511392.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse) 	ENST00000515421.1|CDV3|ENSG00000091527.11|CDV3 homolog (mouse)
hg19_v2_chr3_-_24536253_24536328	0.113738	GCAGCAU	ENST00000428492.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000396671.2|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000431815.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000418247.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000416420.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000356447.4|THRB|ENSG00000151090.13|thyroid hormone receptor, beta
hg19_v2_chr17_-_63557759_63557774	0.113456	GCAGCAU	ENST00000307078.5|AXIN2|ENSG00000168646.8|axin 2
hg19_v2_chr2_-_24149977_24150007	0.111542	GCAGCAU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr16_-_66785699_66785759	0.110004	GCAGCAU	ENST00000258198.2|DYNC1LI2|ENSG00000135720.8|dynein, cytoplasmic 1, light intermediate chain 2
hg19_v2_chr11_+_56949221_56949221	0.108939	GCAGCAU	ENST00000497933.1|LRRC55|ENSG00000183908.5|leucine rich repeat containing 55
hg19_v2_chr20_-_40247133_40247194	0.107778	GCAGCAU	ENST00000373233.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6 	ENST00000309279.7|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr20_+_35201857_35201891	0.105702	GCAGCAU	ENST00000373874.2|TGIF2|ENSG00000118707.5|TGFB-induced factor homeobox 2
hg19_v2_chr11_-_82782861_82782949	0.101416	GCAGCAU	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chrX_+_95939711_95939786	0.0993369	GCAGCAU	ENST00000373049.4|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2 	ENST00000324765.8|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2
hg19_v2_chr6_-_11232891_11232915	0.096739	GCAGCAU	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr1_-_232697304_232697304	0.0941646	GCAGCAU	ENST00000366630.1|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr20_-_5591626_5591677	0.0926506	GCAGCAU	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr11_+_111473108_111473226	0.0919433	GCAGCAU	ENST00000304987.3|SIK2|ENSG00000170145.4|salt-inducible kinase 2
hg19_v2_chr1_+_201617450_201617465	0.0914073	GCAGCAU	ENST00000295624.6|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367297.4|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367300.3|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr1_-_84464780_84464862	0.088135	GCAGCAU	ENST00000260505.8|TTLL7|ENSG00000137941.12|tubulin tyrosine ligase-like family, member 7
hg19_v2_chr1_+_10271674_10271674	0.0859085	GCAGCAU	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr16_+_87636474_87636533	0.0837079	GCAGCAU	ENST00000284262.2|JPH3|ENSG00000154118.8|junctophilin 3
hg19_v2_chr12_-_8088871_8088932	0.082995	GCAGCAU	ENST00000075120.7|SLC2A3|ENSG00000059804.11|solute carrier family 2 (facilitated glucose transporter), member 3
hg19_v2_chr3_-_167452614_167452697	0.0818455	GCAGCAU	ENST00000392750.2|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000464360.1|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000492139.1|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000471885.1|PDCD10|ENSG00000114209.10|programmed cell death 10 	ENST00000470131.1|PDCD10|ENSG00000114209.10|programmed cell death 10
hg19_v2_chr10_-_105615164_105615323	0.0798936	GCAGCAU	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chrX_+_70752917_70752933	0.0794848	GCAGCAU	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr8_-_41655107_41655159	0.0794687	GCAGCAU	ENST00000347528.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000289734.7|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000379758.2|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396945.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396942.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000352337.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr4_+_48343339_48343414	0.0789894	GCAGCAU	ENST00000264313.6|SLAIN2|ENSG00000109171.10|SLAIN motif family, member 2
hg19_v2_chr10_+_134210672_134210753	0.0780191	GCAGCAU	ENST00000305233.5|PWWP2B|ENSG00000171813.10|PWWP domain containing 2B 	ENST00000368609.4|PWWP2B|ENSG00000171813.10|PWWP domain containing 2B
hg19_v2_chr17_+_29718642_29718656	0.0777772	GCAGCAU	ENST00000325874.8|RAB11FIP4|ENSG00000131242.11|RAB11 family interacting protein 4 (class II)
hg19_v2_chr22_+_41697520_41697613	0.0773462	GCAGCAU	ENST00000352645.4|ZC3H7B|ENSG00000100403.10|zinc finger CCCH-type containing 7B
hg19_v2_chr3_-_171178157_171178225	0.077308	GCAGCAU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr3_-_58419537_58419584	0.0771147	GCAGCAU	ENST00000474765.1|PDHB|ENSG00000168291.8|pyruvate dehydrogenase (lipoamide) beta 	ENST00000485460.1|PDHB|ENSG00000168291.8|pyruvate dehydrogenase (lipoamide) beta 	ENST00000302746.6|PDHB|ENSG00000168291.8|pyruvate dehydrogenase (lipoamide) beta 	ENST00000383714.4|PDHB|ENSG00000168291.8|pyruvate dehydrogenase (lipoamide) beta
hg19_v2_chr12_-_9913489_9913506	0.0770481	GCAGCAU	ENST00000228434.3|CD69|ENSG00000110848.4|CD69 molecule 	ENST00000536709.1|CD69|ENSG00000110848.4|CD69 molecule
hg19_v2_chr14_-_61190754_61190852	0.0758772	GCAGCAU	ENST00000216513.4|SIX4|ENSG00000100625.8|SIX homeobox 4
hg19_v2_chr12_-_80084862_80084884	0.0716457	GCAGCAU	ENST00000328827.4|PAWR|ENSG00000177425.6|PRKC, apoptosis, WT1, regulator
hg19_v2_chr1_+_33005020_33005077	0.0703041	GCAGCAU	ENST00000373510.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A 	ENST00000316459.4|ZBTB8A|ENSG00000160062.10|zinc finger and BTB domain containing 8A
hg19_v2_chr9_+_4679555_4679617	0.0701651	GCAGCAU	ENST00000381858.1|CDC37L1|ENSG00000106993.7|cell division cycle 37-like 1 	ENST00000381854.3|CDC37L1|ENSG00000106993.7|cell division cycle 37-like 1
hg19_v2_chr20_-_31071239_31071307	0.0698564	GCAGCAU	ENST00000359676.5|C20orf112|ENSG00000197183.8|chromosome 20 open reading frame 112
hg19_v2_chr12_+_862089_862343	0.0690386	GCAGCAU	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chr3_-_136471204_136471249	0.0686456	GCAGCAU	ENST00000480733.1|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000383202.2|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000236698.5|STAG1|ENSG00000118007.8|stromal antigen 1 	ENST00000434713.2|STAG1|ENSG00000118007.8|stromal antigen 1
hg19_v2_chr9_+_37800758_37800822	0.0681376	GCAGCAU	ENST00000242323.7|DCAF10|ENSG00000122741.11|DDB1 and CUL4 associated factor 10
hg19_v2_chr14_+_92588281_92588336	0.0673966	GCAGCAU	ENST00000298875.4|CPSF2|ENSG00000165934.8|cleavage and polyadenylation specific factor 2, 100kDa 	ENST00000553427.1|CPSF2|ENSG00000165934.8|cleavage and polyadenylation specific factor 2, 100kDa
hg19_v2_chr3_+_9975497_9975553	0.0668269	GCAGCAU	ENST00000397170.3|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1 	ENST00000383811.3|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1 	ENST00000452070.1|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1 	ENST00000326434.5|CRELD1|ENSG00000163703.13|cysteine-rich with EGF-like domains 1
hg19_v2_chr17_+_61699766_61699826	0.0668087	GCAGCAU	ENST00000579585.1|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3 	ENST00000584573.1|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3 	ENST00000361733.3|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3 	ENST00000361357.3|MAP3K3|ENSG00000198909.3|mitogen-activated protein kinase kinase kinase 3
hg19_v2_chr8_+_37654424_37654436	0.066676	GCAGCAU	ENST00000315215.7|GPR124|ENSG00000020181.13|G protein-coupled receptor 124
hg19_v2_chr9_+_97136833_97136857	0.0659707	GCAGCAU	ENST00000375344.3|HIATL1|ENSG00000148110.11|hippocampus abundant transcript-like 1
hg19_v2_chr22_-_41864662_41864729	0.0658039	GCAGCAU	ENST00000216252.3|PHF5A|ENSG00000100410.3|PHD finger protein 5A
hg19_v2_chr2_+_231577532_231577639	0.0655121	GCAGCAU	ENST00000258418.5|CAB39|ENSG00000135932.6|calcium binding protein 39
hg19_v2_chr3_+_38495333_38495422	0.0648936	GCAGCAU	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr17_-_26684473_26684571	0.0645066	GCAGCAU	ENST00000540200.1|POLDIP2|ENSG00000004142.7|polymerase (DNA-directed), delta interacting protein 2
hg19_v2_chr4_+_3076388_3076431	0.0638219	GCAGCAU	ENST00000355072.5|HTT|ENSG00000197386.6|huntingtin
hg19_v2_chr1_-_27709793_27709810	0.0630088	GCAGCAU	ENST00000374027.3|CD164L2|ENSG00000174950.6|CD164 sialomucin-like 2 	ENST00000374025.3|CD164L2|ENSG00000174950.6|CD164 sialomucin-like 2
hg19_v2_chr3_+_119187785_119187863	0.0627887	GCAGCAU	ENST00000295588.4|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1 	ENST00000476573.1|POGLUT1|ENSG00000163389.6|protein O-glucosyltransferase 1
hg19_v2_chr9_+_115513003_115513137	0.0623415	GCAGCAU	ENST00000374232.3|SNX30|ENSG00000148158.12|sorting nexin family member 30
hg19_v2_chr3_-_113415441_113415500	0.0623046	GCAGCAU	ENST00000491165.1|KIAA2018|ENSG00000176542.5|KIAA2018 	ENST00000316407.4|KIAA2018|ENSG00000176542.5|KIAA2018
hg19_v2_chr14_+_23775971_23776000	0.061754	GCAGCAU	ENST00000250405.5|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr2_+_120517174_120517207	0.0612036	GCAGCAU	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr6_-_116381918_116381977	0.060631	GCAGCAU	ENST00000606080.1|FRK|ENSG00000111816.6|fyn-related kinase
hg19_v2_chr17_-_7120525_7120666	0.0600187	GCAGCAU	ENST00000447163.1|DLG4|ENSG00000132535.14|discs, large homolog 4 (Drosophila) 	ENST00000399506.2|DLG4|ENSG00000132535.14|discs, large homolog 4 (Drosophila) 	ENST00000302955.6|DLG4|ENSG00000132535.14|discs, large homolog 4 (Drosophila)
hg19_v2_chr12_-_6809958_6809996	0.0588534	GCAGCAU	ENST00000320591.5|PIANP|ENSG00000139200.9|PILR alpha associated neural protein 	ENST00000534837.1|PIANP|ENSG00000139200.9|PILR alpha associated neural protein
hg19_v2_chr17_+_30264014_30264086	0.0570553	GCAGCAU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr11_+_82904746_82904832	0.0568917	GCAGCAU	ENST00000393389.3|ANKRD42|ENSG00000137494.9|ankyrin repeat domain 42 	ENST00000528722.1|ANKRD42|ENSG00000137494.9|ankyrin repeat domain 42
hg19_v2_chr3_-_72496035_72496069	0.0546162	GCAGCAU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr10_+_97803151_97803348	0.0517081	GCAGCAU	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr6_-_90062543_90062567	0.0516833	GCAGCAU	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr3_-_196159268_196159345	0.0481742	GCAGCAU	ENST00000381887.3|UBXN7|ENSG00000163960.7|UBX domain protein 7 	ENST00000535858.1|UBXN7|ENSG00000163960.7|UBX domain protein 7 	ENST00000428095.1|UBXN7|ENSG00000163960.7|UBX domain protein 7 	ENST00000296328.4|UBXN7|ENSG00000163960.7|UBX domain protein 7
hg19_v2_chr8_+_21777159_21777221	0.0480086	GCAGCAU	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr10_-_61666267_61666414	0.0473677	GCAGCAU	ENST00000263102.6|CCDC6|ENSG00000108091.10|coiled-coil domain containing 6
hg19_v2_chr2_-_219925189_219925189	0.0462932	GCAGCAU	ENST00000295731.6|IHH|ENSG00000163501.6|indian hedgehog
hg19_v2_chr1_-_155224751_155224779	0.0458644	GCAGCAU	ENST00000350210.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B 	ENST00000368368.3|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chrX_+_30671476_30671655	0.0447556	GCAGCAU	ENST00000378946.3|GK|ENSG00000198814.8|glycerol kinase 	ENST00000378943.3|GK|ENSG00000198814.8|glycerol kinase 	ENST00000378945.3|GK|ENSG00000198814.8|glycerol kinase 	ENST00000427190.1|GK|ENSG00000198814.8|glycerol kinase 	ENST00000378941.3|GK|ENSG00000198814.8|glycerol kinase
hg19_v2_chr1_+_36348790_36348822	0.0439704	GCAGCAU	ENST00000373204.4|AGO1|ENSG00000092847.6|argonaute RISC catalytic component 1
hg19_v2_chr5_-_137878887_137878989	0.043344	GCAGCAU	ENST00000507939.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000572514.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000499810.2|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000360541.5|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1
hg19_v2_chr17_-_38804061_38804112	0.0418334	GCAGCAU	ENST00000474246.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000377808.4|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000578044.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580419.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000400122.3|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580654.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000577721.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000478349.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000431889.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
hg19_v2_chr1_+_176432298_176432319	0.0413426	GCAGCAU	ENST00000367661.3|PAPPA2|ENSG00000116183.6|pappalysin 2 	ENST00000367662.3|PAPPA2|ENSG00000116183.6|pappalysin 2
hg19_v2_chr5_-_132948216_132948255	0.0409807	GCAGCAU	ENST00000265342.7|FSTL4|ENSG00000053108.12|follistatin-like 4
hg19_v2_chr11_+_75273101_75273234	0.0397113	GCAGCAU	ENST00000533603.1|SERPINH1|ENSG00000149257.9|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 	ENST00000358171.3|SERPINH1|ENSG00000149257.9|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 	ENST00000526242.1|SERPINH1|ENSG00000149257.9|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
hg19_v2_chr18_+_158513_158608	0.0380651	GCAGCAU	ENST00000400266.3|USP14|ENSG00000101557.10|ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 	ENST00000580410.1|USP14|ENSG00000101557.10|ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 	ENST00000383589.2|USP14|ENSG00000101557.10|ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 	ENST00000261601.7|USP14|ENSG00000101557.10|ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)
hg19_v2_chr22_-_32146106_32146141	0.0380414	GCAGCAU	ENST00000327423.6|PRR14L|ENSG00000183530.9|proline rich 14-like 	ENST00000397493.2|PRR14L|ENSG00000183530.9|proline rich 14-like 	ENST00000434485.1|PRR14L|ENSG00000183530.9|proline rich 14-like 	ENST00000412743.1|PRR14L|ENSG00000183530.9|proline rich 14-like
hg19_v2_chr12_-_57400227_57400245	0.0358263	GCAGCAU	ENST00000300101.2|ZBTB39|ENSG00000166860.2|zinc finger and BTB domain containing 39
hg19_v2_chr10_+_104263743_104263836	0.0346437	GCAGCAU	ENST00000369902.3|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000369899.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000423559.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila)
hg19_v2_chr6_-_88411911_88411928	0.0340179	GCAGCAU	ENST00000257787.5|AKIRIN2|ENSG00000135334.8|akirin 2
hg19_v2_chr17_-_73975444_73975528	0.0337997	GCAGCAU	ENST00000293217.5|ACOX1|ENSG00000161533.7|acyl-CoA oxidase 1, palmitoyl 	ENST00000537812.1|ACOX1|ENSG00000161533.7|acyl-CoA oxidase 1, palmitoyl
hg19_v2_chr5_-_111093406_111093458	0.0336619	GCAGCAU	ENST00000379671.3|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr4_-_90229142_90229217	0.0336336	GCAGCAU	ENST00000609438.1|GPRIN3|ENSG00000185477.4|GPRIN family member 3
hg19_v2_chr1_-_117210290_117210376	0.0317331	GCAGCAU	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chr20_+_19997948_19998034	0.0315081	GCAGCAU	ENST00000310450.4|NAA20|ENSG00000173418.7|N(alpha)-acetyltransferase 20, NatB catalytic subunit 	ENST00000398602.2|NAA20|ENSG00000173418.7|N(alpha)-acetyltransferase 20, NatB catalytic subunit
hg19_v2_chr3_-_160283348_160283376	0.0306145	GCAGCAU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr6_+_151186554_151186691	0.0299342	GCAGCAU	ENST00000367321.3|MTHFD1L|ENSG00000120254.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 	ENST00000367307.4|MTHFD1L|ENSG00000120254.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
hg19_v2_chr12_+_57522258_57522313	0.0284633	GCAGCAU	ENST00000553277.1|LRP1|ENSG00000123384.9|low density lipoprotein receptor-related protein 1 	ENST00000243077.3|LRP1|ENSG00000123384.9|low density lipoprotein receptor-related protein 1
hg19_v2_chr2_-_160472952_160473080	0.0266524	GCAGCAU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr13_+_20532807_20532841	0.0259416	GCAGCAU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr2_+_170683942_170683972	0.0248372	GCAGCAU	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr3_-_12200851_12200885	0.0241768	GCAGCAU	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr2_+_208576355_208576475	0.0224939	GCAGCAU	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr15_+_85923856_85923987	0.0221923	GCAGCAU	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr20_-_39928705_39928740	0.0219728	GCAGCAU	ENST00000436099.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000309060.3|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000373261.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000436440.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000540170.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000557816.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000560361.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr4_+_148538517_148538592	0.0218593	GCAGCAU	ENST00000296582.3|TMEM184C|ENSG00000164168.3|transmembrane protein 184C 	ENST00000508208.1|TMEM184C|ENSG00000164168.3|transmembrane protein 184C
hg19_v2_chr4_-_39979576_39979588	0.021657	GCAGCAU	ENST00000303538.8|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 	ENST00000503396.1|PDS5A|ENSG00000121892.10|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
hg19_v2_chr14_-_53417732_53417815	0.0207403	GCAGCAU	ENST00000399304.3|FERMT2|ENSG00000073712.9|fermitin family member 2 	ENST00000395631.2|FERMT2|ENSG00000073712.9|fermitin family member 2 	ENST00000341590.3|FERMT2|ENSG00000073712.9|fermitin family member 2 	ENST00000343279.4|FERMT2|ENSG00000073712.9|fermitin family member 2
hg19_v2_chr14_-_27066636_27066701	0.0179013	GCAGCAU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr15_-_72490114_72490145	0.0175013	GCAGCAU	ENST00000309731.7|GRAMD2|ENSG00000175318.7|GRAM domain containing 2
hg19_v2_chr10_-_99052382_99052413	0.0174754	GCAGCAU	ENST00000453547.2|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000466484.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000316676.8|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358308.3|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358531.4|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr9_+_108006880_108006943	0.0162915	GCAGCAU	ENST00000374723.1|SLC44A1|ENSG00000070214.11|solute carrier family 44 (choline transporter), member 1 	ENST00000374720.3|SLC44A1|ENSG00000070214.11|solute carrier family 44 (choline transporter), member 1 	ENST00000374724.1|SLC44A1|ENSG00000070214.11|solute carrier family 44 (choline transporter), member 1
hg19_v2_chr10_-_15210666_15210707	0.0153645	GCAGCAU	ENST00000378165.4|NMT2|ENSG00000152465.13|N-myristoyltransferase 2
hg19_v2_chr1_+_90286562_90286617	0.014985	GCAGCAU	ENST00000525774.1|LRRC8D|ENSG00000171492.10|leucine rich repeat containing 8 family, member D 	ENST00000337338.5|LRRC8D|ENSG00000171492.10|leucine rich repeat containing 8 family, member D
hg19_v2_chr6_+_30539153_30539255	0.0148301	GCAGCAU	ENST00000326195.8|ABCF1|ENSG00000204574.8|ATP-binding cassette, sub-family F (GCN20), member 1 	ENST00000376545.3|ABCF1|ENSG00000204574.8|ATP-binding cassette, sub-family F (GCN20), member 1 	ENST00000396515.4|ABCF1|ENSG00000204574.8|ATP-binding cassette, sub-family F (GCN20), member 1 	ENST00000441867.1|ABCF1|ENSG00000204574.8|ATP-binding cassette, sub-family F (GCN20), member 1 	ENST00000468958.1|ABCF1|ENSG00000204574.8|ATP-binding cassette, sub-family F (GCN20), member 1
hg19_v2_chr9_-_116163400_116163613	0.013996	GCAGCAU	ENST00000277315.5|ALAD|ENSG00000148218.11|aminolevulinate dehydratase 	ENST00000448137.1|ALAD|ENSG00000148218.11|aminolevulinate dehydratase 	ENST00000409155.3|ALAD|ENSG00000148218.11|aminolevulinate dehydratase
hg19_v2_chr8_-_23315190_23315235	0.0139842	GCAGCAU	ENST00000356206.6|ENTPD4|ENSG00000197217.8|ectonucleoside triphosphate diphosphohydrolase 4 	ENST00000358689.4|ENTPD4|ENSG00000197217.8|ectonucleoside triphosphate diphosphohydrolase 4 	ENST00000417069.2|ENTPD4|ENSG00000197217.8|ectonucleoside triphosphate diphosphohydrolase 4
hg19_v2_chr7_+_128379346_128379447	0.0138251	GCAGCAU	ENST00000535011.2|CALU|ENSG00000128595.12|calumenin 	ENST00000542996.2|CALU|ENSG00000128595.12|calumenin 	ENST00000535623.1|CALU|ENSG00000128595.12|calumenin 	ENST00000538546.1|CALU|ENSG00000128595.12|calumenin 	ENST00000249364.4|CALU|ENSG00000128595.12|calumenin 	ENST00000449187.2|CALU|ENSG00000128595.12|calumenin
hg19_v2_chrX_-_19988382_19988416	0.0131518	GCAGCAU	ENST00000356980.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379687.3|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23 	ENST00000379682.4|CXorf23|ENSG00000173681.12|chromosome X open reading frame 23
hg19_v2_chr7_-_5553369_5553445	0.011785	GCAGCAU	ENST00000453700.3|FBXL18|ENSG00000155034.14|F-box and leucine-rich repeat protein 18 	ENST00000382368.3|FBXL18|ENSG00000155034.14|F-box and leucine-rich repeat protein 18
hg19_v2_chr11_+_57520715_57520776	0.0109729	GCAGCAU	ENST00000524630.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000529919.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000399039.4|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000533189.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1
hg19_v2_chr10_-_75910789_75910821	0.00988148	GCAGCAU	ENST00000355264.4|AP3M1|ENSG00000185009.8|adaptor-related protein complex 3, mu 1 subunit
hg19_v2_chr16_-_74700737_74700804	0.00880313	GCAGCAU	ENST00000576652.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000572337.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000571750.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000572990.1|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3 	ENST00000361070.4|RFWD3|ENSG00000168411.9|ring finger and WD repeat domain 3
hg19_v2_chr1_-_10532531_10532594	0.0056423	GCAGCAU	ENST00000377036.2|DFFA|ENSG00000160049.7|DNA fragmentation factor, 45kDa, alpha polypeptide 	ENST00000377038.3|DFFA|ENSG00000160049.7|DNA fragmentation factor, 45kDa, alpha polypeptide
hg19_v2_chr14_+_102228123_102228237	0.00532442	GCAGCAU	ENST00000422945.2|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000554442.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556260.2|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000328724.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557268.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr2_+_204192942_204193038	0.00417496	GCAGCAU	ENST00000295851.5|ABI2|ENSG00000138443.11|abl-interactor 2 	ENST00000261017.5|ABI2|ENSG00000138443.11|abl-interactor 2
hg19_v2_chr12_-_118797475_118797527	0.00311644	GCAGCAU	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr17_-_42580738_42580798	0.0029204	GCAGCAU	ENST00000585614.1|GPATCH8|ENSG00000186566.7|G patch domain containing 8 	ENST00000591680.1|GPATCH8|ENSG00000186566.7|G patch domain containing 8 	ENST00000434000.1|GPATCH8|ENSG00000186566.7|G patch domain containing 8 	ENST00000588554.1|GPATCH8|ENSG00000186566.7|G patch domain containing 8 	ENST00000592154.1|GPATCH8|ENSG00000186566.7|G patch domain containing 8
hg19_v2_chr19_-_43032532_43032661	0.00192732	GCAGCAU	ENST00000403461.1|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000352591.5|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000358394.3|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000403444.3|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000308072.4|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000599389.1|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000351134.3|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 	ENST00000161559.6|CEACAM1|ENSG00000079385.17|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
hg19_v2_chr12_-_42632016_42632089	0.00191977	GCAGCAU	ENST00000442791.3|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000327791.4|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000534854.2|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000380788.3|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000380790.4|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chr1_-_156786530_156786626	0.000705552	GCAGCAU	ENST00000368198.3|SH2D2A|ENSG00000027869.7|SH2 domain containing 2A
hg19_v2_chr15_-_30114622_30114706	0.000593394	GCAGCAU	ENST00000495972.2|TJP1|ENSG00000104067.12|tight junction protein 1 	ENST00000346128.6|TJP1|ENSG00000104067.12|tight junction protein 1
