hg19_v2_chr17_-_26694979_26695007	0.158983	FOXA3_FOXC2	ENST00000438614.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr17_+_79953310_79953319	0.132912	FOXA3_FOXC2	ENST00000582355.2|ASPSCR1|ENSG00000169696.11|alveolar soft part sarcoma chromosome region, candidate 1
hg19_v2_chr9_+_129097520_129097531	0.130682	FOXA3_FOXC2	ENST00000436593.3|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr17_-_26695013_26695033	0.12341	FOXA3_FOXC2	ENST00000555059.2|CTB-96E2.2|ENSG00000273171.1|Homeobox protein SEBOX
hg19_v2_chr17_-_29641104_29641130	0.116806	FOXA3_FOXC2	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr4_-_174256276_174256303	0.108987	FOXA3_FOXC2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr3_-_193096600_193096632	0.108779	FOXA3_FOXC2	ENST00000446087.1|ATP13A5|ENSG00000187527.6|ATPase type 13A5 	ENST00000342358.4|ATP13A5|ENSG00000187527.6|ATPase type 13A5
hg19_v2_chr12_+_27849378_27849428	0.108452	FOXA3_FOXC2	ENST00000310791.2|REP15|ENSG00000174236.2|RAB15 effector protein
hg19_v2_chr5_+_40841410_40841489	0.104541	FOXA3_FOXC2	ENST00000381677.3|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr10_+_124739911_124739957	0.0860175	FOXA3_FOXC2	ENST00000405485.1|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr4_-_140223614_140223668	0.0853403	FOXA3_FOXC2	ENST00000394223.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr2_-_188312971_188312987	0.0832472	FOXA3_FOXC2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr4_-_140223670_140223705	0.0797047	FOXA3_FOXC2	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr17_-_29641084_29641103	0.0791571	FOXA3_FOXC2	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr1_+_152486950_152486978	0.0781078	FOXA3_FOXC2	ENST00000368790.3|CRCT1|ENSG00000169509.5|cysteine-rich C-terminal 1
hg19_v2_chr17_-_77967433_77967526	0.0752837	FOXA3_FOXC2	ENST00000571872.1|TBC1D16|ENSG00000167291.11|TBC1 domain family, member 16
hg19_v2_chr1_-_201096312_201096312	0.0739767	FOXA3_FOXC2	ENST00000449188.2|ASCL5|ENSG00000232237.2|achaete-scute family bHLH transcription factor 5
hg19_v2_chr9_-_3469181_3469181	0.07114	FOXA3_FOXC2	ENST00000366116.2|AL365202.1|ENSG00000203286.4|Uncharacterized protein
hg19_v2_chrX_-_15402498_15402515	0.0675947	FOXA3_FOXC2	ENST00000297904.3|FIGF|ENSG00000165197.4|c-fos induced growth factor (vascular endothelial growth factor D)
hg19_v2_chr14_+_56584414_56584532	0.0658922	FOXA3_FOXC2	ENST00000559044.1|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr8_+_21777243_21777275	0.0653392	FOXA3_FOXC2	ENST00000521303.1|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr1_+_239882842_239882850	0.0648064	FOXA3_FOXC2	ENST00000448020.1|CHRM3|ENSG00000133019.7|cholinergic receptor, muscarinic 3
hg19_v2_chr1_+_86064794_86064814	0.0645701	FOXA3_FOXC2	ENST00000426794.1|RP11-290M5.2|ENSG00000230285.1|RP11-290M5.2
hg19_v2_chr6_-_41715128_41715142	0.0638455	FOXA3_FOXC2	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr11_-_107582775_107582788	0.0636289	FOXA3_FOXC2	ENST00000305991.2|SLN|ENSG00000170290.3|sarcolipin
hg19_v2_chr18_-_59415987_59416065	0.0613241	FOXA3_FOXC2	ENST00000590199.1|RP11-879F14.1|ENSG00000267175.1|RP11-879F14.1	ENST00000590968.1|RP11-879F14.1|ENSG00000267175.1|RP11-879F14.1
hg19_v2_chr2_+_58655461_58655492	0.0593859	FOXA3_FOXC2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr20_-_1974692_1974732	0.0580143	FOXA3_FOXC2	ENST00000217305.2|PDYN|ENSG00000101327.4|prodynorphin 	ENST00000539905.1|PDYN|ENSG00000101327.4|prodynorphin
hg19_v2_chr5_+_60933634_60933637	0.0548595	FOXA3_FOXC2	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr19_-_36019123_36019253	0.0535223	FOXA3_FOXC2	ENST00000588674.1|SBSN|ENSG00000189001.6|suprabasin 	ENST00000452271.2|SBSN|ENSG00000189001.6|suprabasin 	ENST00000518157.1|SBSN|ENSG00000189001.6|suprabasin
hg19_v2_chr12_+_96588279_96588323	0.0531466	FOXA3_FOXC2	ENST00000552142.1|ELK3|ENSG00000111145.3|ELK3, ETS-domain protein (SRF accessory protein 2)
hg19_v2_chr5_+_133859996_133860046	0.0524153	FOXA3_FOXC2	ENST00000512386.1|PHF15|ENSG00000043143.16|jade family PHD finger 2
hg19_v2_chr1_-_207095324_207095357	0.0513878	FOXA3_FOXC2	ENST00000530505.1|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000367091.3|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3 	ENST00000442471.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr2_+_196522032_196522173	0.0500824	FOXA3_FOXC2	ENST00000418005.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr6_+_101846664_101846702	0.0500683	FOXA3_FOXC2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr6_+_161123270_161123278	0.0496996	FOXA3_FOXC2	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr16_+_14802801_14802801	0.049276	FOXA3_FOXC2	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr7_+_28452130_28452154	0.0483633	FOXA3_FOXC2	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr12_-_21928515_21928544	0.0482726	FOXA3_FOXC2	ENST00000537950.1|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr11_-_116708302_116708347	0.0480168	FOXA3_FOXC2	ENST00000375320.1|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000359492.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375329.2|APOA1|ENSG00000118137.5|apolipoprotein A-I 	ENST00000375323.1|APOA1|ENSG00000118137.5|apolipoprotein A-I
hg19_v2_chr12_+_120740119_120740124	0.0470565	FOXA3_FOXC2	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr12_-_120765565_120765592	0.0468828	FOXA3_FOXC2	ENST00000423423.3|PLA2G1B|ENSG00000170890.9|phospholipase A2, group IB (pancreas) 	ENST00000308366.4|PLA2G1B|ENSG00000170890.9|phospholipase A2, group IB (pancreas)
hg19_v2_chr3_+_119316721_119316739	0.0468416	FOXA3_FOXC2	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr12_-_106480587_106480734	0.0464712	FOXA3_FOXC2	ENST00000548902.1|NUAK1|ENSG00000074590.9|NUAK family, SNF1-like kinase, 1
hg19_v2_chr11_-_108464465_108464507	0.0455466	FOXA3_FOXC2	ENST00000525344.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr10_+_71561630_71561644	0.0455028	FOXA3_FOXC2	ENST00000398974.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398971.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398968.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398966.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398964.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398969.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000356340.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398972.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000398973.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr12_-_102591604_102591623	0.0453249	FOXA3_FOXC2	ENST00000329406.4|PMCH|ENSG00000183395.4|pro-melanin-concentrating hormone
hg19_v2_chr2_+_58655520_58655570	0.0449754	FOXA3_FOXC2	ENST00000455219.3|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000449448.2|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr2_+_20650796_20650830	0.0448216	FOXA3_FOXC2	ENST00000448241.1|AC023137.2|ENSG00000228950.1|AC023137.2
hg19_v2_chr19_+_42806250_42806298	0.044491	FOXA3_FOXC2	ENST00000598490.1|PRR19|ENSG00000188368.5|proline rich 19 	ENST00000341747.3|PRR19|ENSG00000188368.5|proline rich 19
hg19_v2_chr18_+_3449330_3449411	0.0435695	FOXA3_FOXC2	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr21_-_28215332_28215347	0.0430441	FOXA3_FOXC2	ENST00000517777.1|ADAMTS1|ENSG00000154734.10|ADAM metallopeptidase with thrombospondin type 1 motif, 1
hg19_v2_chr19_+_50380917_50380938	0.0421812	FOXA3_FOXC2	ENST00000535102.2|TBC1D17|ENSG00000104946.6|TBC1 domain family, member 17
hg19_v2_chr4_+_147096837_147096912	0.0415478	FOXA3_FOXC2	ENST00000296581.5|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000502781.1|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr22_+_46449674_46449774	0.0411138	FOXA3_FOXC2	ENST00000381051.2|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr2_+_128175997_128176020	0.0408739	FOXA3_FOXC2	ENST00000234071.3|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000429925.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000442644.1|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa) 	ENST00000453608.2|PROC|ENSG00000115718.13|protein C (inactivator of coagulation factors Va and VIIIa)
hg19_v2_chr4_+_74269956_74270025	0.0405925	FOXA3_FOXC2	ENST00000295897.4|ALB|ENSG00000163631.12|albumin 	ENST00000415165.2|ALB|ENSG00000163631.12|albumin 	ENST00000503124.1|ALB|ENSG00000163631.12|albumin 	ENST00000509063.1|ALB|ENSG00000163631.12|albumin 	ENST00000401494.3|ALB|ENSG00000163631.12|albumin
hg19_v2_chr16_-_4665023_4665047	0.040331	FOXA3_FOXC2	ENST00000591897.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1
hg19_v2_chr11_-_108464321_108464380	0.0395186	FOXA3_FOXC2	ENST00000265843.4|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr2_-_182545603_182545603	0.0392772	FOXA3_FOXC2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr20_+_31823792_31823808	0.0387259	FOXA3_FOXC2	ENST00000375413.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000354297.4|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1 	ENST00000375422.2|BPIFA1|ENSG00000198183.7|BPI fold containing family A, member 1
hg19_v2_chr1_-_207095212_207095278	0.0386552	FOXA3_FOXC2	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr14_-_70263979_70264009	0.0382748	FOXA3_FOXC2	ENST00000216540.4|SLC10A1|ENSG00000100652.4|solute carrier family 10 (sodium/bile acid cotransporter), member 1
hg19_v2_chr10_+_71561704_71561874	0.0382714	FOXA3_FOXC2	ENST00000520267.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr19_+_50380682_50380822	0.0381547	FOXA3_FOXC2	ENST00000221543.5|TBC1D17|ENSG00000104946.6|TBC1 domain family, member 17
hg19_v2_chr4_+_15376165_15376178	0.0378894	FOXA3_FOXC2	ENST00000382383.3|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000429690.1|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr3_+_69985792_69985874	0.0376715	FOXA3_FOXC2	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr19_-_50380536_50380618	0.0375716	FOXA3_FOXC2	ENST00000391832.3|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000391834.2|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich) 	ENST00000344175.5|AKT1S1|ENSG00000204673.6|AKT1 substrate 1 (proline-rich)
hg19_v2_chr4_+_75174204_75174251	0.037322	FOXA3_FOXC2	ENST00000332112.4|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000514968.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000503098.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000502358.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000509145.1|EPGN|ENSG00000182585.5|epithelial mitogen 	ENST00000505212.1|EPGN|ENSG00000182585.5|epithelial mitogen
hg19_v2_chr16_-_15474904_15474904	0.0370347	FOXA3_FOXC2	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr16_+_77233294_77233341	0.0365727	FOXA3_FOXC2	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr14_+_23299088_23299258	0.0349649	FOXA3_FOXC2	ENST00000355151.5|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397496.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555345.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000432849.3|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000553711.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556465.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000397505.2|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000557221.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000311892.6|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000556840.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52 	ENST00000555536.1|MRPL52|ENSG00000172590.14|mitochondrial ribosomal protein L52
hg19_v2_chr3_+_189349162_189349305	0.0344291	FOXA3_FOXC2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr17_-_27038063_27038117	0.0341312	FOXA3_FOXC2	ENST00000439862.3|PROCA1|ENSG00000167525.9|protein interacting with cyclin A1
hg19_v2_chr20_+_9049303_9049454	0.0340795	FOXA3_FOXC2	ENST00000407043.2|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000441846.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr8_+_11666649_11666765	0.0338487	FOXA3_FOXC2	ENST00000528643.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525777.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr3_+_119316689_119316710	0.0334162	FOXA3_FOXC2	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr12_-_21556577_21556599	0.0332283	FOXA3_FOXC2	ENST00000450590.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000453443.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2
hg19_v2_chr4_-_71532207_71532244	0.0332087	FOXA3_FOXC2	ENST00000543780.1|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides 	ENST00000391614.3|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr14_-_23526739_23526766	0.0327565	FOXA3_FOXC2	ENST00000397359.3|CDH24|ENSG00000139880.15|cadherin 24, type 2 	ENST00000487137.2|CDH24|ENSG00000139880.15|cadherin 24, type 2
hg19_v2_chr21_+_17792672_17792775	0.0325195	FOXA3_FOXC2	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr4_+_57138437_57138570	0.0323429	FOXA3_FOXC2	ENST00000504228.1|KIAA1211|ENSG00000109265.8|KIAA1211 	ENST00000541073.1|KIAA1211|ENSG00000109265.8|KIAA1211
hg19_v2_chrX_-_133792480_133792522	0.032208	FOXA3_FOXC2	ENST00000359237.4|PLAC1|ENSG00000170965.5|placenta-specific 1
hg19_v2_chrX_-_80457385_80457441	0.0318151	FOXA3_FOXC2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr12_+_21525818_21525862	0.0317876	FOXA3_FOXC2	ENST00000240652.3|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000542023.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide 	ENST00000537593.1|IAPP|ENSG00000121351.3|islet amyloid polypeptide
hg19_v2_chr11_-_18062335_18062335	0.0313131	FOXA3_FOXC2	ENST00000341556.2|TPH1|ENSG00000129167.5|tryptophan hydroxylase 1
hg19_v2_chr4_+_86396265_86396276	0.0309563	FOXA3_FOXC2	ENST00000395184.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr4_-_164534657_164534701	0.0304899	FOXA3_FOXC2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr11_+_65657875_65657875	0.0302863	FOXA3_FOXC2	ENST00000312579.2|CCDC85B|ENSG00000175602.2|coiled-coil domain containing 85B
hg19_v2_chrX_+_150345054_150345125	0.0301862	FOXA3_FOXC2	ENST00000218316.3|GPR50|ENSG00000102195.7|G protein-coupled receptor 50
hg19_v2_chr19_+_41257084_41257125	0.0297511	FOXA3_FOXC2	ENST00000601393.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr12_-_57328187_57328195	0.0294525	FOXA3_FOXC2	ENST00000293502.1|SDR9C7|ENSG00000170426.1|short chain dehydrogenase/reductase family 9C, member 7
hg19_v2_chr3_+_161214596_161214596	0.0281199	FOXA3_FOXC2	ENST00000327928.4|OTOL1|ENSG00000182447.4|otolin 1
hg19_v2_chr12_+_48099858_48099877	0.0280143	FOXA3_FOXC2	ENST00000547799.1|RP1-197B17.3|ENSG00000257433.1|RP1-197B17.3
hg19_v2_chr14_-_99737565_99737617	0.0280099	FOXA3_FOXC2	ENST00000357195.3|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr14_-_101036119_101036131	0.0280015	FOXA3_FOXC2	ENST00000355173.2|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr3_+_135741576_135741601	0.0278293	FOXA3_FOXC2	ENST00000334546.2|PPP2R3A|ENSG00000073711.6|protein phosphatase 2, regulatory subunit B'', alpha
hg19_v2_chr17_-_79212825_79212865	0.0276013	FOXA3_FOXC2	ENST00000374769.2|ENTHD2|ENSG00000167302.5|ENTH domain containing 2
hg19_v2_chr9_-_70490107_70490246	0.0271133	FOXA3_FOXC2	ENST00000377395.4|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000429800.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000430059.2|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000377384.1|CBWD5|ENSG00000147996.12|COBW domain containing 5 	ENST00000382405.3|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr1_+_174933899_174933955	0.0268761	FOXA3_FOXC2	ENST00000367688.3|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr17_-_39684550_39684567	0.0267156	FOXA3_FOXC2	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr10_+_71562180_71562291	0.0263197	FOXA3_FOXC2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr2_+_74120094_74120142	0.0259575	FOXA3_FOXC2	ENST00000409731.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000345517.3|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409918.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000442912.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric 	ENST00000409624.1|ACTG2|ENSG00000163017.9|actin, gamma 2, smooth muscle, enteric
hg19_v2_chr1_+_24645807_24645819	0.0254937	FOXA3_FOXC2	ENST00000361548.4|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr7_-_107968921_107968937	0.0253451	FOXA3_FOXC2	ENST00000442580.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr4_+_118955500_118955612	0.0250256	FOXA3_FOXC2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr16_-_4664860_4664927	0.0249349	FOXA3_FOXC2	ENST00000587615.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000587649.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000590965.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000591401.1|UBALD1|ENSG00000153443.8|UBA-like domain containing 1 	ENST00000283474.7|UBALD1|ENSG00000153443.8|UBA-like domain containing 1
hg19_v2_chr3_-_116163830_116163855	0.0248254	FOXA3_FOXC2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr10_-_4285923_4286104	0.0246689	FOXA3_FOXC2	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr5_+_40841276_40841312	0.0245256	FOXA3_FOXC2	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr5_+_61874696_61874702	0.024497	FOXA3_FOXC2	ENST00000491184.2|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70
hg19_v2_chr1_-_152332480_152332484	0.0243394	FOXA3_FOXC2	ENST00000388718.5|FLG2|ENSG00000143520.6|filaggrin family member 2
hg19_v2_chr1_+_24645915_24645973	0.0242815	FOXA3_FOXC2	ENST00000350501.5|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr1_+_74701062_74701099	0.0241791	FOXA3_FOXC2	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr5_-_115872142_115872154	0.024144	FOXA3_FOXC2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr12_-_15038779_15038860	0.0238161	FOXA3_FOXC2	ENST00000228938.5|MGP|ENSG00000111341.5|matrix Gla protein 	ENST00000539261.1|MGP|ENSG00000111341.5|matrix Gla protein
hg19_v2_chr2_-_39456673_39456673	0.0236485	FOXA3_FOXC2	ENST00000378803.1|CDKL4|ENSG00000205111.4|cyclin-dependent kinase-like 4 	ENST00000395035.3|CDKL4|ENSG00000205111.4|cyclin-dependent kinase-like 4
hg19_v2_chr7_+_77469439_77469497	0.0236396	FOXA3_FOXC2	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr17_+_74372662_74372742	0.0236032	FOXA3_FOXC2	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr2_+_136343904_136343928	0.0233772	FOXA3_FOXC2	ENST00000436436.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr15_+_63188009_63188017	0.0228265	FOXA3_FOXC2	ENST00000557900.1|RP11-1069G10.2|ENSG00000259727.1|RP11-1069G10.2
hg19_v2_chr22_-_39268308_39268319	0.0227707	FOXA3_FOXC2	ENST00000407418.3|CBX6|ENSG00000183741.7|chromobox homolog 6
hg19_v2_chr12_-_56326402_56326424	0.0227117	FOXA3_FOXC2	ENST00000547925.1|WIBG|ENSG00000170473.12|within bgcn homolog (Drosophila)
hg19_v2_chr10_+_71561649_71561703	0.0226273	FOXA3_FOXC2	ENST00000398978.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000354547.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000357811.3|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr6_-_161085291_161085308	0.0224934	FOXA3_FOXC2	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr5_+_61874562_61874685	0.0224526	FOXA3_FOXC2	ENST00000334994.5|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70 	ENST00000409534.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr7_-_81399355_81399373	0.0223376	FOXA3_FOXC2	ENST00000457544.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr7_+_116654935_116654949	0.0221755	FOXA3_FOXC2	ENST00000432298.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000422922.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr1_+_24646002_24646056	0.0221086	FOXA3_FOXC2	ENST00000356046.2|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr4_-_71532601_71532662	0.0221025	FOXA3_FOXC2	ENST00000510614.1|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr1_+_24646263_24646304	0.0220535	FOXA3_FOXC2	ENST00000524724.1|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr2_-_145275228_145275464	0.0218878	FOXA3_FOXC2	ENST00000427902.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409487.3|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000470879.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000435831.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr11_-_82708519_82708523	0.0215003	FOXA3_FOXC2	ENST00000534301.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr7_-_81399329_81399347	0.0214535	FOXA3_FOXC2	ENST00000453411.1|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor) 	ENST00000444829.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr1_+_24645865_24645881	0.0213428	FOXA3_FOXC2	ENST00000342072.4|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr7_+_106505696_106505798	0.021066	FOXA3_FOXC2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr15_-_76352069_76352145	0.0209767	FOXA3_FOXC2	ENST00000305435.10|NRG4|ENSG00000169752.12|neuregulin 4 	ENST00000563910.1|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr4_-_72649763_72649802	0.0209688	FOXA3_FOXC2	ENST00000513476.1|GC|ENSG00000145321.8|group-specific component (vitamin D binding protein)
hg19_v2_chr19_+_13906250_13906274	0.0209211	FOXA3_FOXC2	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr4_-_88450372_88450424	0.02089	FOXA3_FOXC2	ENST00000543631.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr20_+_9494987_9495027	0.0208427	FOXA3_FOXC2	ENST00000427562.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5 	ENST00000246070.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5
hg19_v2_chr1_+_246729724_246729794	0.0206629	FOXA3_FOXC2	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr4_+_110769258_110769358	0.0205879	FOXA3_FOXC2	ENST00000594814.1|LRIT3|ENSG00000183423.7|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
hg19_v2_chr2_+_136343943_136344007	0.0204792	FOXA3_FOXC2	ENST00000409606.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr12_+_93096759_93096804	0.0203074	FOXA3_FOXC2	ENST00000544406.2|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr15_+_49462397_49462430	0.0201026	FOXA3_FOXC2	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr10_-_21435488_21435488	0.0200521	FOXA3_FOXC2	ENST00000534331.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000529198.1|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113 	ENST00000377118.4|C10orf113|ENSG00000204683.6|chromosome 10 open reading frame 113
hg19_v2_chr16_+_73420942_73420962	0.019969	FOXA3_FOXC2	ENST00000554640.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000562661.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1	ENST00000561875.1|RP11-140I24.1|ENSG00000258779.2|RP11-140I24.1
hg19_v2_chr17_-_79212884_79212895	0.0198042	FOXA3_FOXC2	ENST00000300714.3|ENTHD2|ENSG00000167302.5|ENTH domain containing 2
hg19_v2_chr11_-_66112555_66112601	0.0197904	FOXA3_FOXC2	ENST00000425825.2|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1 	ENST00000359957.3|BRMS1|ENSG00000174744.9|breast cancer metastasis suppressor 1
hg19_v2_chr7_+_86273218_86273242	0.0197105	FOXA3_FOXC2	ENST00000361669.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr12_+_93096619_93096750	0.0196065	FOXA3_FOXC2	ENST00000397833.3|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr2_-_145275828_145275981	0.0194669	FOXA3_FOXC2	ENST00000392861.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2 	ENST00000409211.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr4_-_186456766_186456794	0.0194331	FOXA3_FOXC2	ENST00000284771.6|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr4_-_71532668_71532695	0.0194127	FOXA3_FOXC2	ENST00000510437.1|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr1_+_73771844_73771922	0.0194004	FOXA3_FOXC2	ENST00000440762.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000444827.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000415686.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000411903.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1
hg19_v2_chr10_+_35484053_35484076	0.019393	FOXA3_FOXC2	ENST00000487763.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000473940.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000488328.1|CREM|ENSG00000095794.15|cAMP responsive element modulator 	ENST00000356917.5|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chr2_+_135596180_135596193	0.0192155	FOXA3_FOXC2	ENST00000283054.4|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase 	ENST00000392928.1|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr4_+_75174180_75174196	0.0191538	FOXA3_FOXC2	ENST00000413830.1|EPGN|ENSG00000182585.5|epithelial mitogen
hg19_v2_chr9_-_28670283_28670283	0.0191507	FOXA3_FOXC2	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chr20_-_55841662_55841736	0.0189632	FOXA3_FOXC2	ENST00000395863.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7 	ENST00000450594.2|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr9_-_37034028_37034157	0.0189249	FOXA3_FOXC2	ENST00000520281.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000446742.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000522003.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523145.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000414447.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377847.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377853.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000377852.2|PAX5|ENSG00000196092.8|paired box 5 	ENST00000523241.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000520154.1|PAX5|ENSG00000196092.8|paired box 5 	ENST00000358127.4|PAX5|ENSG00000196092.8|paired box 5
hg19_v2_chr1_-_246357029_246357043	0.0188982	FOXA3_FOXC2	ENST00000391836.2|SMYD3|ENSG00000185420.14|SET and MYND domain containing 3
hg19_v2_chr11_-_57158109_57158130	0.0188842	FOXA3_FOXC2	ENST00000525955.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000533605.1|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 	ENST00000311862.5|PRG2|ENSG00000186652.5|proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)
hg19_v2_chr7_-_81399678_81399714	0.0187721	FOXA3_FOXC2	ENST00000412881.1|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr15_+_60296421_60296464	0.0187021	FOXA3_FOXC2	ENST00000396057.4|FOXB1|ENSG00000171956.5|forkhead box B1
hg19_v2_chr19_-_47157914_47157980	0.0186079	FOXA3_FOXC2	ENST00000300875.4|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr5_+_125800836_125800850	0.0184801	FOXA3_FOXC2	ENST00000511134.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr19_+_15160130_15160195	0.018408	FOXA3_FOXC2	ENST00000427043.3|CASP14|ENSG00000105141.4|caspase 14, apoptosis-related cysteine peptidase
hg19_v2_chr6_-_49755019_49755053	0.0183797	FOXA3_FOXC2	ENST00000304801.3|PGK2|ENSG00000170950.3|phosphoglycerate kinase 2
hg19_v2_chr5_+_125706998_125707018	0.018363	FOXA3_FOXC2	ENST00000506445.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr15_+_38964048_38964101	0.0182161	FOXA3_FOXC2	ENST00000560203.1|RP11-275I4.2|ENSG00000259747.1|RP11-275I4.2	ENST00000557946.1|RP11-275I4.2|ENSG00000259747.1|RP11-275I4.2
hg19_v2_chr12_-_772901_772945	0.018128	FOXA3_FOXC2	ENST00000305108.4|NINJ2|ENSG00000171840.7|ninjurin 2
hg19_v2_chr4_+_15341442_15341589	0.018091	FOXA3_FOXC2	ENST00000397700.2|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000295297.4|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr17_+_7487146_7487211	0.0180624	FOXA3_FOXC2	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr5_+_101569696_101569696	0.0180462	FOXA3_FOXC2	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr9_-_110251836_110251927	0.0179841	FOXA3_FOXC2	ENST00000374672.4|KLF4|ENSG00000136826.10|Kruppel-like factor 4 (gut)
hg19_v2_chr7_+_138943265_138943265	0.0179537	FOXA3_FOXC2	ENST00000483726.1|UBN2|ENSG00000157741.10|ubinuclein 2
hg19_v2_chr17_-_6947225_6947253	0.0179242	FOXA3_FOXC2	ENST00000574600.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000308009.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11 	ENST00000447225.1|SLC16A11|ENSG00000174326.7|solute carrier family 16, member 11
hg19_v2_chr1_-_28384598_28384680	0.0179004	FOXA3_FOXC2	ENST00000373864.1|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr17_-_39183452_39183468	0.0178981	FOXA3_FOXC2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr12_-_49581152_49581241	0.0178105	FOXA3_FOXC2	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr18_-_3874752_3874767	0.0177636	FOXA3_FOXC2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr11_-_115375107_115375283	0.01776	FOXA3_FOXC2	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr5_+_142286887_142286918	0.0176643	FOXA3_FOXC2	ENST00000451259.1|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr3_+_114012819_114012833	0.0175342	FOXA3_FOXC2	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr20_+_44519948_44519986	0.0175002	FOXA3_FOXC2	ENST00000354880.5|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000191018.5|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr5_+_140710061_140710252	0.0173915	FOXA3_FOXC2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr10_-_118032979_118033132	0.0173648	FOXA3_FOXC2	ENST00000355422.6|GFRA1|ENSG00000151892.10|GDNF family receptor alpha 1
hg19_v2_chr4_+_148653206_148653219	0.0170176	FOXA3_FOXC2	ENST00000336498.3|ARHGAP10|ENSG00000071205.7|Rho GTPase activating protein 10
hg19_v2_chr11_-_82708435_82708472	0.0169648	FOXA3_FOXC2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr7_+_106505912_106505931	0.0169237	FOXA3_FOXC2	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr20_+_9146969_9147005	0.0168987	FOXA3_FOXC2	ENST00000416836.1|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr1_-_1356719_1356824	0.0167472	FOXA3_FOXC2	ENST00000520296.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr10_-_31288398_31288455	0.016656	FOXA3_FOXC2	ENST00000538351.2|ZNF438|ENSG00000183621.11|zinc finger protein 438
hg19_v2_chr3_-_107941209_107941227	0.016478	FOXA3_FOXC2	ENST00000492106.1|IFT57|ENSG00000114446.4|intraflagellar transport 57 homolog (Chlamydomonas)
hg19_v2_chrX_+_90689810_90689826	0.0161815	FOXA3_FOXC2	ENST00000312600.3|PABPC5|ENSG00000174740.7|poly(A) binding protein, cytoplasmic 5
hg19_v2_chr1_+_207277632_207277676	0.0161573	FOXA3_FOXC2	ENST00000421786.1|C4BPA|ENSG00000123838.6|complement component 4 binding protein, alpha
hg19_v2_chr15_+_59665194_59665232	0.0161562	FOXA3_FOXC2	ENST00000560394.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr7_+_26438187_26438351	0.0159734	FOXA3_FOXC2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr11_-_83984231_83984330	0.0158642	FOXA3_FOXC2	ENST00000330014.6|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000537455.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000376106.3|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000418306.2|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000531015.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr14_-_99737822_99737861	0.0158406	FOXA3_FOXC2	ENST00000345514.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein) 	ENST00000443726.2|BCL11B|ENSG00000127152.13|B-cell CLL/lymphoma 11B (zinc finger protein)
hg19_v2_chr4_-_74486217_74486273	0.0153886	FOXA3_FOXC2	ENST00000335049.5|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6 	ENST00000307439.5|RASSF6|ENSG00000169435.9|Ras association (RalGDS/AF-6) domain family member 6
hg19_v2_chr18_+_61575200_61575230	0.015361	FOXA3_FOXC2	ENST00000238508.3|SERPINB10|ENSG00000242550.1|serpin peptidase inhibitor, clade B (ovalbumin), member 10
hg19_v2_chr9_+_71986182_71986182	0.0150434	FOXA3_FOXC2	ENST00000303068.7|FAM189A2|ENSG00000135063.13|family with sequence similarity 189, member A2
hg19_v2_chr21_-_36259445_36259519	0.0149528	FOXA3_FOXC2	ENST00000399240.1|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr9_+_112852477_112852514	0.0149383	FOXA3_FOXC2	ENST00000480388.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr3_-_105588231_105588396	0.0148269	FOXA3_FOXC2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr9_-_95186739_95186763	0.0148151	FOXA3_FOXC2	ENST00000375550.4|OMD|ENSG00000127083.7|osteomodulin
hg19_v2_chr7_-_81399287_81399323	0.0147723	FOXA3_FOXC2	ENST00000354224.6|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr2_-_180427304_180427323	0.0147474	FOXA3_FOXC2	ENST00000336917.5|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr15_+_59664884_59664903	0.014673	FOXA3_FOXC2	ENST00000558348.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr15_-_66797172_66797221	0.0146309	FOXA3_FOXC2	ENST00000569438.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000569696.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000307961.6|RPL4|ENSG00000174444.10|ribosomal protein L4
hg19_v2_chr15_+_49462434_49462488	0.014602	FOXA3_FOXC2	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr1_-_149459549_149459549	0.0145372	FOXA3_FOXC2	ENST00000369175.3|FAM72C|ENSG00000203817.5|family with sequence similarity 72, member C
hg19_v2_chr1_+_35225339_35225343	0.014537	FOXA3_FOXC2	ENST00000339480.1|GJB4|ENSG00000189433.5|gap junction protein, beta 4, 30.3kDa
hg19_v2_chr2_+_162272605_162272753	0.0145171	FOXA3_FOXC2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr6_+_12717892_12717903	0.0144588	FOXA3_FOXC2	ENST00000379350.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr4_+_79567362_79567380	0.0142571	FOXA3_FOXC2	ENST00000512322.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chrX_+_24167746_24167811	0.0141293	FOXA3_FOXC2	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr1_+_104159999_104160068	0.014117	FOXA3_FOXC2	ENST00000414303.2|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic) 	ENST00000423678.1|AMY2A|ENSG00000243480.3|amylase, alpha 2A (pancreatic)
hg19_v2_chr1_+_40713573_40713620	0.014087	FOXA3_FOXC2	ENST00000372766.3|TMCO2|ENSG00000188800.5|transmembrane and coiled-coil domains 2
hg19_v2_chr20_+_44520009_44520020	0.0140549	FOXA3_FOXC2	ENST00000607482.1|CTSA|ENSG00000064601.12|cathepsin A 	ENST00000372459.2|CTSA|ENSG00000064601.12|cathepsin A
hg19_v2_chr2_+_105050794_105050854	0.013974	FOXA3_FOXC2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr17_-_46688334_46688385	0.013962	FOXA3_FOXC2	ENST00000239165.7|HOXB7|ENSG00000260027.3|homeobox B7
hg19_v2_chr2_-_183291741_183291771	0.0137803	FOXA3_FOXC2	ENST00000351439.5|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent 	ENST00000409365.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr7_-_81399438_81399514	0.0136468	FOXA3_FOXC2	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr12_+_59989791_59989874	0.0134104	FOXA3_FOXC2	ENST00000552432.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr6_-_26056695_26056701	0.0129415	FOXA3_FOXC2	ENST00000343677.2|HIST1H1C|ENSG00000187837.2|histone cluster 1, H1c
hg19_v2_chr7_-_107443652_107443675	0.0128458	FOXA3_FOXC2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr12_+_40787194_40787197	0.012808	FOXA3_FOXC2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr2_-_87248975_87248975	0.0126726	FOXA3_FOXC2	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chr1_-_43855444_43855478	0.0126584	FOXA3_FOXC2	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr7_-_81399411_81399432	0.012623	FOXA3_FOXC2	ENST00000423064.2|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr12_-_76879852_76879888	0.0123989	FOXA3_FOXC2	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr2_+_135596106_135596137	0.0123541	FOXA3_FOXC2	ENST00000356140.5|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr4_+_79567314_79567348	0.0123288	FOXA3_FOXC2	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr17_-_39140549_39140579	0.0121617	FOXA3_FOXC2	ENST00000377755.4|KRT40|ENSG00000204889.6|keratin 40
hg19_v2_chr3_-_196910477_196910524	0.0120375	FOXA3_FOXC2	ENST00000447466.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr5_+_95385819_95385852	0.0120049	FOXA3_FOXC2	ENST00000507997.1|RP11-254I22.1|ENSG00000250551.1|RP11-254I22.1
hg19_v2_chr7_-_121784285_121784350	0.0119403	FOXA3_FOXC2	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chr17_+_7476136_7476160	0.0117793	FOXA3_FOXC2	ENST00000582169.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578754.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000578495.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000293831.8|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000380512.5|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000585024.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000583802.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577269.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000584784.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000582746.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr11_-_16419067_16419108	0.0117672	FOXA3_FOXC2	ENST00000533411.1|SOX6|ENSG00000110693.11|SRY (sex determining region Y)-box 6
hg19_v2_chr18_+_59415396_59415427	0.0117299	FOXA3_FOXC2	ENST00000567801.1|RP11-1096D5.1|ENSG00000260440.1|RP11-1096D5.1
hg19_v2_chr2_+_136343820_136343897	0.011498	FOXA3_FOXC2	ENST00000410054.1|R3HDM1|ENSG00000048991.12|R3H domain containing 1
hg19_v2_chr5_+_32531893_32531930	0.0114682	FOXA3_FOXC2	ENST00000512913.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae)
hg19_v2_chr7_-_91794590_91794590	0.0113804	FOXA3_FOXC2	ENST00000430130.2|LRRD1|ENSG00000240720.3|leucine-rich repeats and death domain containing 1 	ENST00000454089.2|LRRD1|ENSG00000240720.3|leucine-rich repeats and death domain containing 1
hg19_v2_chr8_-_6420930_6420957	0.011328	FOXA3_FOXC2	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr15_+_58430368_58430401	0.0113059	FOXA3_FOXC2	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr1_+_104293028_104293028	0.0111699	FOXA3_FOXC2	ENST00000370079.3|AMY1C|ENSG00000187733.6|amylase, alpha 1C (salivary)
hg19_v2_chr15_-_40600111_40600166	0.0111637	FOXA3_FOXC2	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr5_+_140787600_140787770	0.0111635	FOXA3_FOXC2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr6_-_25830785_25830844	0.0111027	FOXA3_FOXC2	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr10_-_73848086_73848099	0.0110737	FOXA3_FOXC2	ENST00000536168.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chr11_-_85397167_85397320	0.0110694	FOXA3_FOXC2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr8_+_55528627_55528631	0.0109798	FOXA3_FOXC2	ENST00000220676.1|RP1|ENSG00000104237.6|retinitis pigmentosa 1 (autosomal dominant)
hg19_v2_chrX_+_65382381_65382392	0.0109598	FOXA3_FOXC2	ENST00000519389.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr6_-_88875654_88875767	0.0107536	FOXA3_FOXC2	ENST00000535130.1|CNR1|ENSG00000118432.11|cannabinoid receptor 1 (brain)
hg19_v2_chr3_-_71114066_71114114	0.0106784	FOXA3_FOXC2	ENST00000485326.2|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr12_+_28605426_28605475	0.0106512	FOXA3_FOXC2	ENST00000542801.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr3_-_168864427_168864464	0.010588	FOXA3_FOXC2	ENST00000468789.1|MECOM|ENSG00000085276.13|MDS1 and EVI1 complex locus
hg19_v2_chr7_-_115670804_115670867	0.0105749	FOXA3_FOXC2	ENST00000320239.7|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr7_+_95115210_95115217	0.0104616	FOXA3_FOXC2	ENST00000428113.1|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4 	ENST00000325885.5|ASB4|ENSG00000005981.8|ankyrin repeat and SOCS box containing 4
hg19_v2_chr11_-_110561721_110561721	0.0101529	FOXA3_FOXC2	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr2_+_145425534_145425557	0.0101057	FOXA3_FOXC2	ENST00000432608.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597655.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000598659.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000600679.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000601277.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000451027.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000445791.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596540.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596230.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000594471.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000598248.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597469.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000431734.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000595686.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr17_+_4613776_4613792	0.00999485	FOXA3_FOXC2	ENST00000269260.2|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr14_+_52164820_52164841	0.00989958	FOXA3_FOXC2	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr16_+_67381289_67381306	0.00978934	FOXA3_FOXC2	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr15_+_58430567_58430589	0.00973652	FOXA3_FOXC2	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr11_+_20044096_20044116	0.00973021	FOXA3_FOXC2	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chrX_+_65382433_65382486	0.00972751	FOXA3_FOXC2	ENST00000374727.3|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chrX_+_107288239_107288259	0.00968611	FOXA3_FOXC2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr1_+_87797351_87797441	0.00962472	FOXA3_FOXC2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr18_-_3874247_3874262	0.0095486	FOXA3_FOXC2	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr1_-_149859466_149859521	0.00952625	FOXA3_FOXC2	ENST00000331128.3|HIST2H2AB|ENSG00000184270.3|histone cluster 2, H2ab
hg19_v2_chrX_+_107288197_107288212	0.00926893	FOXA3_FOXC2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr18_-_31803435_31803515	0.00926462	FOXA3_FOXC2	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr15_-_40600026_40600061	0.00922802	FOXA3_FOXC2	ENST00000456256.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000557821.1|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr17_-_66951474_66951550	0.00884595	FOXA3_FOXC2	ENST00000269080.2|ABCA8|ENSG00000141338.9|ATP-binding cassette, sub-family A (ABC1), member 8
hg19_v2_chr4_-_71532339_71532377	0.00883812	FOXA3_FOXC2	ENST00000254801.4|IGJ|ENSG00000132465.6|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
hg19_v2_chr14_-_36990354_36990397	0.00874982	FOXA3_FOXC2	ENST00000518149.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr10_+_124320195_124320216	0.00871299	FOXA3_FOXC2	ENST00000359586.6|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr3_+_142315294_142315315	0.00867014	FOXA3_FOXC2	ENST00000464320.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr8_-_120651020_120651091	0.00865797	FOXA3_FOXC2	ENST00000522826.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000520066.1|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000259486.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2 	ENST00000075322.6|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chr16_-_48281444_48281479	0.00864111	FOXA3_FOXC2	ENST00000537808.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11 	ENST00000569991.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr10_-_85985294_85985345	0.00859669	FOXA3_FOXC2	ENST00000538192.1|LRIT2|ENSG00000204033.5|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
hg19_v2_chr1_-_151431674_151431691	0.00856985	FOXA3_FOXC2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr2_-_21266816_21266849	0.00852395	FOXA3_FOXC2	ENST00000399256.4|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr14_+_74034310_74034345	0.00848443	FOXA3_FOXC2	ENST00000538782.1|ACOT2|ENSG00000119673.10|acyl-CoA thioesterase 2
hg19_v2_chr6_+_30103885_30103922	0.00842976	FOXA3_FOXC2	ENST00000396581.1|TRIM40|ENSG00000204614.4|tripartite motif containing 40
hg19_v2_chr12_+_58087901_58087947	0.00831055	FOXA3_FOXC2	ENST00000315970.7|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000547079.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000439210.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389146.6|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000413095.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000551035.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000257966.8|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000435406.2|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000550372.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin 	ENST00000389142.5|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr12_-_7596735_7596781	0.00829729	FOXA3_FOXC2	ENST00000416109.2|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000396630.1|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000313599.3|CD163L1|ENSG00000177675.4|CD163 molecule-like 1
hg19_v2_chr14_+_58711539_58711627	0.00821385	FOXA3_FOXC2	ENST00000216455.4|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000412908.2|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3 	ENST00000557508.1|PSMA3|ENSG00000100567.8|proteasome (prosome, macropain) subunit, alpha type, 3
hg19_v2_chr4_+_166794383_166794500	0.00802056	FOXA3_FOXC2	ENST00000061240.2|TLL1|ENSG00000038295.3|tolloid-like 1 	ENST00000507499.1|TLL1|ENSG00000038295.3|tolloid-like 1
hg19_v2_chr3_-_186080012_186080030	0.00797621	FOXA3_FOXC2	ENST00000544847.1|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa 	ENST00000265022.3|DGKG|ENSG00000058866.10|diacylglycerol kinase, gamma 90kDa
hg19_v2_chr21_-_32931290_32931341	0.00783076	FOXA3_FOXC2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr17_-_36358166_36358166	0.00779581	FOXA3_FOXC2	ENST00000537432.1|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr8_+_92261516_92261555	0.00774317	FOXA3_FOXC2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr11_-_72070206_72070250	0.00753034	FOXA3_FOXC2	ENST00000544382.1|CLPB|ENSG00000162129.8|ClpB caseinolytic peptidase B homolog (E. coli)
hg19_v2_chr1_-_150669604_150669643	0.00715722	FOXA3_FOXC2	ENST00000427665.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like 	ENST00000540514.1|GOLPH3L|ENSG00000143457.6|golgi phosphoprotein 3-like
hg19_v2_chrX_-_55020511_55020626	0.00710869	FOXA3_FOXC2	ENST00000375006.3|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 	ENST00000374992.2|PFKFB1|ENSG00000158571.6|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
hg19_v2_chr2_+_28974668_28974729	0.00709233	FOXA3_FOXC2	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr10_-_128210005_128210014	0.00700818	FOXA3_FOXC2	ENST00000284694.7|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000454341.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000432642.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90 	ENST00000392694.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr8_+_52730143_52730143	0.00687948	FOXA3_FOXC2	ENST00000415643.1|AC090186.1|ENSG00000232941.1|Uncharacterized protein
hg19_v2_chr4_-_88450244_88450287	0.00682276	FOXA3_FOXC2	ENST00000503414.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr3_+_35721182_35721277	0.00673687	FOXA3_FOXC2	ENST00000413378.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000417925.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr16_+_67381263_67381284	0.00667891	FOXA3_FOXC2	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr1_+_114471809_114471855	0.00663529	FOXA3_FOXC2	ENST00000426820.2|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr1_+_159141397_159141549	0.00649354	FOXA3_FOXC2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr10_-_126849068_126849138	0.00642525	FOXA3_FOXC2	ENST00000494626.2|CTBP2|ENSG00000175029.12|C-terminal binding protein 2 	ENST00000337195.5|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr2_-_225434538_225434545	0.00630529	FOXA3_FOXC2	ENST00000409096.1|CUL3|ENSG00000036257.8|cullin 3
hg19_v2_chr19_+_782755_782833	0.00629302	FOXA3_FOXC2	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr19_-_18902106_18902123	0.00619719	FOXA3_FOXC2	ENST00000542601.2|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein 	ENST00000425807.1|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein 	ENST00000222271.2|COMP|ENSG00000105664.6|cartilage oligomeric matrix protein
hg19_v2_chr17_+_8924837_8924872	0.0061736	FOXA3_FOXC2	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr22_-_30867973_30868036	0.00593073	FOXA3_FOXC2	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr17_-_26697304_26697373	0.00587561	FOXA3_FOXC2	ENST00000536498.1|VTN|ENSG00000109072.9|vitronectin
hg19_v2_chr5_-_41213607_41213697	0.00582076	FOXA3_FOXC2	ENST00000337836.5|C6|ENSG00000039537.9|complement component 6 	ENST00000433294.1|C6|ENSG00000039537.9|complement component 6
hg19_v2_chr5_+_57787254_57787271	0.00572825	FOXA3_FOXC2	ENST00000502276.1|GAPT|ENSG00000175857.4|GRB2-binding adaptor protein, transmembrane 	ENST00000396776.2|GAPT|ENSG00000175857.4|GRB2-binding adaptor protein, transmembrane 	ENST00000511930.1|GAPT|ENSG00000175857.4|GRB2-binding adaptor protein, transmembrane
hg19_v2_chr1_+_151739131_151739177	0.00564599	FOXA3_FOXC2	ENST00000400999.1|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr13_+_95364963_95364978	0.00556702	FOXA3_FOXC2	ENST00000438290.2|SOX21-AS1|ENSG00000227640.2|SOX21 antisense RNA 1 (head to head)
hg19_v2_chr5_+_81601166_81601166	0.00551588	FOXA3_FOXC2	ENST00000439350.1|ATP6AP1L|ENSG00000205464.7|ATPase, H+ transporting, lysosomal accessory protein 1-like
hg19_v2_chr20_-_55841398_55841458	0.00540204	FOXA3_FOXC2	ENST00000395864.3|BMP7|ENSG00000101144.8|bone morphogenetic protein 7
hg19_v2_chr7_+_73242490_73242532	0.00537549	FOXA3_FOXC2	ENST00000431918.1|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr1_+_172389821_172389833	0.00533648	FOXA3_FOXC2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr1_-_178840157_178840187	0.00533094	FOXA3_FOXC2	ENST00000367629.1|ANGPTL1|ENSG00000116194.8|angiopoietin-like 1 	ENST00000234816.2|ANGPTL1|ENSG00000116194.8|angiopoietin-like 1
hg19_v2_chr6_+_54172653_54172764	0.00528749	FOXA3_FOXC2	ENST00000370869.3|TINAG|ENSG00000137251.11|tubulointerstitial nephritis antigen
hg19_v2_chr12_-_21487829_21487856	0.00518633	FOXA3_FOXC2	ENST00000445053.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000452078.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000458504.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000422327.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2 	ENST00000421294.1|SLCO1A2|ENSG00000084453.12|solute carrier organic anion transporter family, member 1A2
hg19_v2_chr6_+_158733692_158733692	0.00515549	FOXA3_FOXC2	ENST00000367094.2|TULP4|ENSG00000130338.8|tubby like protein 4 	ENST00000367097.3|TULP4|ENSG00000130338.8|tubby like protein 4
hg19_v2_chr11_-_46615498_46615675	0.00494724	FOXA3_FOXC2	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr9_+_103340354_103340367	0.00484937	FOXA3_FOXC2	ENST00000307584.5|MURC|ENSG00000170681.6|muscle-related coiled-coil protein
hg19_v2_chr11_+_8040739_8040815	0.00480193	FOXA3_FOXC2	ENST00000534099.1|TUB|ENSG00000166402.4|tubby bipartite transcription factor
hg19_v2_chr5_-_59481406_59481425	0.00469741	FOXA3_FOXC2	ENST00000546160.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr5_+_179921430_179921461	0.00458981	FOXA3_FOXC2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr14_-_74551172_74551196	0.00451755	FOXA3_FOXC2	ENST00000553458.1|ALDH6A1|ENSG00000119711.8|aldehyde dehydrogenase 6 family, member A1
hg19_v2_chr14_-_36988882_36988898	0.00446873	FOXA3_FOXC2	ENST00000498187.2|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr2_+_169659121_169659157	0.00444385	FOXA3_FOXC2	ENST00000397206.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000397209.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking 	ENST00000421711.2|NOSTRIN|ENSG00000163072.10|nitric oxide synthase trafficking
hg19_v2_chr16_-_48281305_48281419	0.00441094	FOXA3_FOXC2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr6_-_43596899_43596915	0.00426032	FOXA3_FOXC2	ENST00000307126.5|GTPBP2|ENSG00000172432.14|GTP binding protein 2 	ENST00000452781.1|GTPBP2|ENSG00000172432.14|GTP binding protein 2
hg19_v2_chr10_+_81466084_81466084	0.00410103	FOXA3_FOXC2	ENST00000342531.2|NUTM2B|ENSG00000188199.6|NUT family member 2B
hg19_v2_chr5_+_137673200_137673271	0.00408272	FOXA3_FOXC2	ENST00000434981.2|FAM53C|ENSG00000120709.6|family with sequence similarity 53, member C
hg19_v2_chr18_-_53070913_53070945	0.00407705	FOXA3_FOXC2	ENST00000568186.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564228.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr8_-_145754428_145754516	0.00403622	FOXA3_FOXC2	ENST00000527462.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000313465.5|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82 	ENST00000524821.1|C8orf82|ENSG00000213563.2|chromosome 8 open reading frame 82
hg19_v2_chr4_+_184826418_184826522	0.00391783	FOXA3_FOXC2	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chrX_+_23352133_23352229	0.00391748	FOXA3_FOXC2	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr10_+_123923105_123923160	0.00391553	FOXA3_FOXC2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr6_-_168479839_168479904	0.00391168	FOXA3_FOXC2	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr2_-_227050079_227050093	0.00391038	FOXA3_FOXC2	ENST00000423838.1|AC068138.1|ENSG00000235070.3|AC068138.1
hg19_v2_chr7_-_107643674_107643700	0.00390823	FOXA3_FOXC2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr7_+_151791074_151791083	0.00382671	FOXA3_FOXC2	ENST00000447796.1|GALNT11|ENSG00000178234.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
hg19_v2_chr2_-_175260368_175260450	0.00379884	FOXA3_FOXC2	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr3_+_50712672_50712703	0.0035496	FOXA3_FOXC2	ENST00000266037.9|DOCK3|ENSG00000088538.12|dedicator of cytokinesis 3
hg19_v2_chr1_+_101361782_101361810	0.00353192	FOXA3_FOXC2	ENST00000357650.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr16_+_4666475_4666516	0.00351748	FOXA3_FOXC2	ENST00000591895.1|MGRN1|ENSG00000102858.8|mahogunin ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr15_-_59665062_59665099	0.00350815	FOXA3_FOXC2	ENST00000288235.4|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr3_+_158991025_158991083	0.00345837	FOXA3_FOXC2	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr5_-_58571935_58571951	0.00342271	FOXA3_FOXC2	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr12_+_58087738_58087891	0.00299817	FOXA3_FOXC2	ENST00000552285.1|OS9|ENSG00000135506.11|osteosarcoma amplified 9, endoplasmic reticulum lectin
hg19_v2_chr3_+_57882024_57882045	0.00286313	FOXA3_FOXC2	ENST00000494088.1|SLMAP|ENSG00000163681.10|sarcolemma associated protein
hg19_v2_chr19_-_15443318_15443373	0.00281216	FOXA3_FOXC2	ENST00000360016.5|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr14_+_105267250_105267250	0.00274939	FOXA3_FOXC2	ENST00000342537.7|ZBTB42|ENSG00000179627.9|zinc finger and BTB domain containing 42
hg19_v2_chr14_+_21156915_21156943	0.00235068	FOXA3_FOXC2	ENST00000397990.4|ANG|ENSG00000214274.5|angiogenin, ribonuclease, RNase A family, 5 	ENST00000555597.1|RNASE4|ENSG00000258818.2|ribonuclease, RNase A family, 4
hg19_v2_chr9_+_70856397_70856397	0.00227958	FOXA3_FOXC2	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr2_-_32490859_32490923	0.00223494	FOXA3_FOXC2	ENST00000404025.2|NLRC4|ENSG00000091106.14|NLR family, CARD domain containing 4
hg19_v2_chr1_-_1356628_1356678	0.00220776	FOXA3_FOXC2	ENST00000442470.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65 	ENST00000537107.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr8_-_133772870_133772881	0.0021335	FOXA3_FOXC2	ENST00000522334.1|TMEM71|ENSG00000165071.10|transmembrane protein 71 	ENST00000519016.1|TMEM71|ENSG00000165071.10|transmembrane protein 71
hg19_v2_chr17_-_41322332_41322420	0.00206325	FOXA3_FOXC2	ENST00000590740.1|RP11-242D8.1|ENSG00000267002.1|RP11-242D8.1
hg19_v2_chr6_-_112575687_112575755	0.00200026	FOXA3_FOXC2	ENST00000521398.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000424408.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000243219.3|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr19_+_47421933_47421933	0.00199506	FOXA3_FOXC2	ENST00000404338.3|ARHGAP35|ENSG00000160007.13|Rho GTPase activating protein 35
hg19_v2_chr6_-_112575912_112575931	0.00199408	FOXA3_FOXC2	ENST00000522006.1|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000230538.7|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000519932.1|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr1_+_61547405_61547534	0.00193988	FOXA3_FOXC2	ENST00000371189.4|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr2_+_68592305_68592405	0.00183442	FOXA3_FOXC2	ENST00000234313.7|PLEK|ENSG00000115956.9|pleckstrin
hg19_v2_chr16_-_3350614_3350614	0.00175459	FOXA3_FOXC2	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr6_-_112575758_112575802	0.00156602	FOXA3_FOXC2	ENST00000431543.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000453937.2|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000368638.4|LAMA4|ENSG00000112769.14|laminin, alpha 4 	ENST00000389463.4|LAMA4|ENSG00000112769.14|laminin, alpha 4
hg19_v2_chr12_+_48516357_48516436	0.00145983	FOXA3_FOXC2	ENST00000549022.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle 	ENST00000547587.1|PFKM|ENSG00000152556.11|phosphofructokinase, muscle 	ENST00000312352.7|PFKM|ENSG00000152556.11|phosphofructokinase, muscle
hg19_v2_chr19_-_10679644_10679661	0.00128216	FOXA3_FOXC2	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr1_+_179851999_179852024	0.00126827	FOXA3_FOXC2	ENST00000527391.1|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr10_+_124320156_124320181	0.00125464	FOXA3_FOXC2	ENST00000338354.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000344338.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000330163.4|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368909.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368955.3|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1 	ENST00000368956.2|DMBT1|ENSG00000187908.11|deleted in malignant brain tumors 1
hg19_v2_chr15_+_28624878_28624878	0.00116462	FOXA3_FOXC2	ENST00000450328.2|GOLGA8F|ENSG00000153684.10|golgin A8 family, member F
hg19_v2_chr4_+_86396321_86396392	0.00112163	FOXA3_FOXC2	ENST00000503995.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr21_-_15583165_15583170	0.0010314	FOXA3_FOXC2	ENST00000536861.1|LIPI|ENSG00000188992.7|lipase, member I
hg19_v2_chr15_+_69857515_69857531	0.00102891	FOXA3_FOXC2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr17_-_65235916_65235949	0.000983652	FOXA3_FOXC2	ENST00000579861.1|HELZ|ENSG00000198265.7|helicase with zinc finger
hg19_v2_chr17_-_44270133_44270207	0.000969256	FOXA3_FOXC2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr6_-_42016385_42016706	0.000942723	FOXA3_FOXC2	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr1_-_177939041_177939053	0.000846956	FOXA3_FOXC2	ENST00000308284.6|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr2_+_220042933_220042985	0.000747366	FOXA3_FOXC2	ENST00000430297.2|FAM134A|ENSG00000144567.6|family with sequence similarity 134, member A
hg19_v2_chr10_-_21186144_21186247	0.000591202	FOXA3_FOXC2	ENST00000377119.1|NEBL|ENSG00000078114.14|nebulette
hg19_v2_chr1_-_151431647_151431669	0.000390171	FOXA3_FOXC2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr10_+_115469134_115469144	0.000275957	FOXA3_FOXC2	ENST00000452490.2|CASP7|ENSG00000165806.15|caspase 7, apoptosis-related cysteine peptidase
hg19_v2_chr15_+_96869165_96869183	0.000214502	FOXA3_FOXC2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr18_-_3874271_3874337	0.000171708	FOXA3_FOXC2	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
