hg19_v2_chr19_+_54466179_54466294	0.311665	AGCCCUU	ENST00000270458.2|CACNG8|ENSG00000142408.2|calcium channel, voltage-dependent, gamma subunit 8
hg19_v2_chr5_-_136834982_136835037	0.257904	AGCCCUU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr10_+_101419187_101419313	0.2501	AGCCCUU	ENST00000370489.4|ENTPD7|ENSG00000198018.6|ectonucleoside triphosphate diphosphohydrolase 7
hg19_v2_chr12_+_56511943_56512191	0.249395	AGCCCUU	ENST00000257940.2|ZC3H10|ENSG00000135482.2|zinc finger CCCH-type containing 10 	ENST00000551790.1|ESYT1|ENSG00000139641.8|extended synaptotagmin-like protein 1 	ENST00000552345.1|ZC3H10|ENSG00000135482.2|zinc finger CCCH-type containing 10 	ENST00000551880.1|ZC3H10|ENSG00000135482.2|zinc finger CCCH-type containing 10 	ENST00000546903.1|ZC3H10|ENSG00000135482.2|zinc finger CCCH-type containing 10
hg19_v2_chr2_+_203499901_203499911	0.224783	AGCCCUU	ENST00000303116.6|FAM117B|ENSG00000138439.10|family with sequence similarity 117, member B 	ENST00000392238.2|FAM117B|ENSG00000138439.10|family with sequence similarity 117, member B
hg19_v2_chr13_-_31736027_31736064	0.219455	AGCCCUU	ENST00000380406.5|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1 	ENST00000320027.5|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1 	ENST00000380405.4|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr16_+_66461175_66461274	0.218026	AGCCCUU	ENST00000536005.2|BEAN1|ENSG00000166546.9|brain expressed, associated with NEDD4, 1 	ENST00000299694.8|BEAN1|ENSG00000166546.9|brain expressed, associated with NEDD4, 1 	ENST00000561796.1|BEAN1|ENSG00000166546.9|brain expressed, associated with NEDD4, 1
hg19_v2_chr1_+_206808918_206808931	0.213429	AGCCCUU	ENST00000367108.3|DYRK3|ENSG00000143479.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
hg19_v2_chr4_-_76439596_76439643	0.212601	AGCCCUU	ENST00000451788.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 	ENST00000512706.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr16_-_48644061_48644141	0.204229	AGCCCUU	ENST00000262384.3|N4BP1|ENSG00000102921.3|NEDD4 binding protein 1
hg19_v2_chr9_-_127952032_127952098	0.202055	AGCCCUU	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr7_-_6388537_6388611	0.185782	AGCCCUU	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr2_+_153191706_153191751	0.179504	AGCCCUU	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr15_+_50716576_50716624	0.178757	AGCCCUU	ENST00000560297.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000307179.4|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000396444.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000433963.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000425032.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8
hg19_v2_chr3_-_69101413_69101457	0.172449	AGCCCUU	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr14_-_34420259_34420291	0.161938	AGCCCUU	ENST00000250457.3|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3 	ENST00000547327.2|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3
hg19_v2_chr10_+_46997926_46997926	0.150084	AGCCCUU	ENST00000374314.4|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr9_+_129622904_129622956	0.147487	AGCCCUU	ENST00000319119.4|ZBTB34|ENSG00000177125.5|zinc finger and BTB domain containing 34
hg19_v2_chr17_+_43971643_43971748	0.146435	AGCCCUU	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr6_+_37321748_37321819	0.138819	AGCCCUU	ENST00000373479.4|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase 	ENST00000394443.4|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase
hg19_v2_chr18_+_9136758_9136852	0.138381	AGCCCUU	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr14_-_31676964_31677017	0.136576	AGCCCUU	ENST00000553700.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr15_-_50978965_50979012	0.134416	AGCCCUU	ENST00000560955.1|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7 	ENST00000313478.7|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7
hg19_v2_chr3_-_185826855_185826911	0.132938	AGCCCUU	ENST00000306376.5|ETV5|ENSG00000244405.3|ets variant 5
hg19_v2_chr5_-_43313574_43313614	0.129356	AGCCCUU	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr9_+_37800758_37800822	0.122726	AGCCCUU	ENST00000242323.7|DCAF10|ENSG00000122741.11|DDB1 and CUL4 associated factor 10
hg19_v2_chr13_+_98086445_98086493	0.119348	AGCCCUU	ENST00000245304.4|RAP2A|ENSG00000125249.6|RAP2A, member of RAS oncogene family
hg19_v2_chr15_+_67358163_67358192	0.115895	AGCCCUU	ENST00000327367.4|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr8_-_103876965_103877012	0.115282	AGCCCUU	ENST00000337198.5|AZIN1|ENSG00000155096.9|antizyme inhibitor 1
hg19_v2_chr5_+_148521046_148521076	0.114807	AGCCCUU	ENST00000326685.7|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3 	ENST00000356541.3|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3 	ENST00000309868.7|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3
hg19_v2_chr14_-_45431091_45431175	0.113779	AGCCCUU	ENST00000579157.1|KLHL28|ENSG00000179454.9|kelch-like family member 28 	ENST00000396128.4|KLHL28|ENSG00000179454.9|kelch-like family member 28 	ENST00000556500.1|KLHL28|ENSG00000179454.9|kelch-like family member 28
hg19_v2_chr3_+_31574189_31574282	0.113247	AGCCCUU	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr8_+_126442563_126442624	0.109344	AGCCCUU	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr15_-_48470558_48470714	0.106495	AGCCCUU	ENST00000324324.7|MYEF2|ENSG00000104177.13|myelin expression factor 2
hg19_v2_chr12_+_69864129_69864222	0.106446	AGCCCUU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr17_+_61086917_61086921	0.103923	AGCCCUU	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr12_-_56224546_56224608	0.103377	AGCCCUU	ENST00000357606.3|DNAJC14|ENSG00000135392.11|DnaJ (Hsp40) homolog, subfamily C, member 14 	ENST00000547445.1|DNAJC14|ENSG00000135392.11|DnaJ (Hsp40) homolog, subfamily C, member 14
hg19_v2_chr8_-_91658303_91658327	0.101558	AGCCCUU	ENST00000458549.2|TMEM64|ENSG00000180694.9|transmembrane protein 64
hg19_v2_chr9_-_86153218_86153461	0.101474	AGCCCUU	ENST00000304195.3|FRMD3|ENSG00000172159.11|FERM domain containing 3 	ENST00000376438.1|FRMD3|ENSG00000172159.11|FERM domain containing 3
hg19_v2_chr3_-_141868357_141868393	0.100494	AGCCCUU	ENST00000489671.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000475734.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000467072.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000499676.2|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr1_-_235292250_235292261	0.0999857	AGCCCUU	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr1_-_212004090_212004168	0.0966558	AGCCCUU	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr10_+_64564469_64564535	0.0946041	AGCCCUU	ENST00000373783.1|ADO|ENSG00000181915.3|2-aminoethanethiol (cysteamine) dioxygenase
hg19_v2_chr8_-_80680078_80680101	0.0919778	AGCCCUU	ENST00000337919.5|HEY1|ENSG00000164683.12|hes-related family bHLH transcription factor with YRPW motif 1 	ENST00000354724.3|HEY1|ENSG00000164683.12|hes-related family bHLH transcription factor with YRPW motif 1
hg19_v2_chr1_-_20812690_20812763	0.0910252	AGCCCUU	ENST00000375078.3|CAMK2N1|ENSG00000162545.5|calcium/calmodulin-dependent protein kinase II inhibitor 1
hg19_v2_chr1_-_27816556_27816572	0.090912	AGCCCUU	ENST00000536657.1|WASF2|ENSG00000158195.6|WAS protein family, member 2
hg19_v2_chr17_+_11924129_11924200	0.0898813	AGCCCUU	ENST00000353533.5|MAP2K4|ENSG00000065559.10|mitogen-activated protein kinase kinase 4 	ENST00000415385.3|MAP2K4|ENSG00000065559.10|mitogen-activated protein kinase kinase 4
hg19_v2_chr2_-_47168906_47168994	0.0889988	AGCCCUU	ENST00000444761.2|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2 	ENST00000409147.1|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2
hg19_v2_chr20_+_49126881_49126936	0.0880248	AGCCCUU	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr6_+_21593972_21594071	0.0853376	AGCCCUU	ENST00000244745.1|SOX4|ENSG00000124766.4|SRY (sex determining region Y)-box 4 	ENST00000543472.1|SOX4|ENSG00000124766.4|SRY (sex determining region Y)-box 4
hg19_v2_chr6_-_108279369_108279422	0.085201	AGCCCUU	ENST00000369002.4|SEC63|ENSG00000025796.9|SEC63 homolog (S. cerevisiae)
hg19_v2_chr12_+_69004619_69004699	0.0851	AGCCCUU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr17_+_46125707_46125746	0.0828138	AGCCCUU	ENST00000584137.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000362042.3|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000585291.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000357480.5|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1
hg19_v2_chr16_+_69599861_69599887	0.0817918	AGCCCUU	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chrX_+_16804544_16804613	0.0805384	AGCCCUU	ENST00000380122.5|TXLNG|ENSG00000086712.8|taxilin gamma 	ENST00000398155.4|TXLNG|ENSG00000086712.8|taxilin gamma
hg19_v2_chr5_-_141704566_141704605	0.0800254	AGCCCUU	ENST00000344120.4|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila) 	ENST00000434127.2|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila)
hg19_v2_chr9_-_74383799_74383818	0.0799055	AGCCCUU	ENST00000377044.4|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chr10_-_33623564_33623603	0.0797947	AGCCCUU	ENST00000374875.1|NRP1|ENSG00000099250.13|neuropilin 1 	ENST00000374822.4|NRP1|ENSG00000099250.13|neuropilin 1
hg19_v2_chr22_+_40390930_40390994	0.0765396	AGCCCUU	ENST00000333407.6|FAM83F|ENSG00000133477.12|family with sequence similarity 83, member F
hg19_v2_chr2_-_54087066_54087297	0.0757599	AGCCCUU	ENST00000394705.2|GPR75|ENSG00000119737.5|G protein-coupled receptor 75 	ENST00000352846.3|GPR75-ASB3|ENSG00000115239.17|GPR75-ASB3 readthrough 	ENST00000406625.2|ASB3|ENSG00000270898.1|Ankyrin repeat and SOCS box protein 3
hg19_v2_chr13_-_22033392_22033510	0.0744253	AGCCCUU	ENST00000320220.9|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000415724.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000422251.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000382466.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000542645.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000400590.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20
hg19_v2_chr1_-_93426998_93427057	0.0735088	AGCCCUU	ENST00000370310.4|FAM69A|ENSG00000154511.7|family with sequence similarity 69, member A
hg19_v2_chr15_-_83316254_83316368	0.071751	AGCCCUU	ENST00000567678.1|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1 	ENST00000450751.2|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1
hg19_v2_chr5_-_38595498_38595514	0.0696264	AGCCCUU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr15_+_91411810_91411828	0.0692946	AGCCCUU	ENST00000268171.3|FURIN|ENSG00000140564.6|furin (paired basic amino acid cleaving enzyme)
hg19_v2_chr2_+_201676256_201676323	0.0681294	AGCCCUU	ENST00000452206.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000410110.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000409600.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr14_+_92588281_92588336	0.0678169	AGCCCUU	ENST00000298875.4|CPSF2|ENSG00000165934.8|cleavage and polyadenylation specific factor 2, 100kDa 	ENST00000553427.1|CPSF2|ENSG00000165934.8|cleavage and polyadenylation specific factor 2, 100kDa
hg19_v2_chr1_+_23037323_23037463	0.0674301	AGCCCUU	ENST00000544305.1|EPHB2|ENSG00000133216.12|EPH receptor B2 	ENST00000374630.3|EPHB2|ENSG00000133216.12|EPH receptor B2 	ENST00000400191.3|EPHB2|ENSG00000133216.12|EPH receptor B2 	ENST00000374632.3|EPHB2|ENSG00000133216.12|EPH receptor B2
hg19_v2_chr1_-_231560790_231560790	0.0669718	AGCCCUU	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr22_-_22863466_22863505	0.0669622	AGCCCUU	ENST00000406426.1|ZNF280B|ENSG00000198477.3|zinc finger protein 280B 	ENST00000360412.2|ZNF280B|ENSG00000198477.3|zinc finger protein 280B
hg19_v2_chr22_-_39151463_39151639	0.0657048	AGCCCUU	ENST00000405510.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2 	ENST00000433561.1|SUN2|ENSG00000100242.11|Sad1 and UNC84 domain containing 2
hg19_v2_chr12_-_102224704_102224750	0.0643378	AGCCCUU	ENST00000299314.7|GNPTAB|ENSG00000111670.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
hg19_v2_chr10_+_24755416_24755470	0.0632754	AGCCCUU	ENST00000396446.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000396445.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376451.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr12_+_95611516_95611527	0.0629925	AGCCCUU	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr3_+_32147997_32148009	0.0628543	AGCCCUU	ENST00000282541.5|GPD1L|ENSG00000152642.6|glycerol-3-phosphate dehydrogenase 1-like
hg19_v2_chr11_-_46142948_46143043	0.0622673	AGCCCUU	ENST00000257821.4|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr5_-_141257954_141258006	0.0621607	AGCCCUU	ENST00000456271.1|PCDH1|ENSG00000156453.9|protocadherin 1 	ENST00000394536.3|PCDH1|ENSG00000156453.9|protocadherin 1 	ENST00000503492.1|PCDH1|ENSG00000156453.9|protocadherin 1 	ENST00000287008.3|PCDH1|ENSG00000156453.9|protocadherin 1
hg19_v2_chr8_+_26240414_26240631	0.0617207	AGCCCUU	ENST00000380629.2|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr14_+_64932210_64932226	0.061677	AGCCCUU	ENST00000394718.4|AKAP5|ENSG00000179841.8|A kinase (PRKA) anchor protein 5
hg19_v2_chr14_-_35099315_35099369	0.061497	AGCCCUU	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr1_-_43833628_43833703	0.0612051	AGCCCUU	ENST00000413844.2|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1 	ENST00000372458.3|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1
hg19_v2_chr14_+_45366472_45366514	0.0610512	AGCCCUU	ENST00000325192.3|C14orf28|ENSG00000179476.3|chromosome 14 open reading frame 28
hg19_v2_chr1_-_23495340_23495357	0.0588788	AGCCCUU	ENST00000418342.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr2_-_128643496_128643496	0.0581766	AGCCCUU	ENST00000272647.5|AMMECR1L|ENSG00000144233.5|AMMECR1-like
hg19_v2_chr3_+_179370517_179370543	0.0571064	AGCCCUU	ENST00000263966.3|USP13|ENSG00000058056.4|ubiquitin specific peptidase 13 (isopeptidase T-3)
hg19_v2_chr12_-_117319236_117319252	0.0569047	AGCCCUU	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr10_-_98346801_98346812	0.0568041	AGCCCUU	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr4_-_80994210_80994284	0.0564411	AGCCCUU	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr11_-_47198380_47198448	0.0557929	AGCCCUU	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr8_+_86089460_86089483	0.0536414	AGCCCUU	ENST00000418930.2|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr10_+_60272814_60272900	0.0530117	AGCCCUU	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr13_-_49107303_49107369	0.051957	AGCCCUU	ENST00000344532.3|RCBTB2|ENSG00000136161.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
hg19_v2_chr2_+_178257372_178257523	0.0512642	AGCCCUU	ENST00000264167.4|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase 	ENST00000409888.1|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase
hg19_v2_chr4_-_68620053_68620112	0.0511779	AGCCCUU	ENST00000420975.2|GNRHR|ENSG00000109163.6|gonadotropin-releasing hormone receptor 	ENST00000226413.4|GNRHR|ENSG00000109163.6|gonadotropin-releasing hormone receptor
hg19_v2_chr5_+_133451254_133451316	0.0493562	AGCCCUU	ENST00000517851.1|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000521639.1|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000522375.1|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000378560.4|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000432532.2|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000520958.1|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000518915.1|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box) 	ENST00000395023.1|TCF7|ENSG00000081059.15|transcription factor 7 (T-cell specific, HMG-box)
hg19_v2_chr12_+_110338063_110338105	0.0490094	AGCCCUU	ENST00000405876.4|TCHP|ENSG00000139437.13|trichoplein, keratin filament binding
hg19_v2_chr2_+_70142189_70142223	0.0478941	AGCCCUU	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr3_-_125094093_125094198	0.0475442	AGCCCUU	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr11_+_111807863_111807937	0.047488	AGCCCUU	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr2_+_73144604_73144654	0.047404	AGCCCUU	ENST00000258106.6|EMX1|ENSG00000135638.9|empty spiracles homeobox 1
hg19_v2_chr3_-_32022733_32022809	0.0468481	AGCCCUU	ENST00000438237.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10 	ENST00000396556.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10
hg19_v2_chr13_+_51796497_51796517	0.04678	AGCCCUU	ENST00000322475.8|FAM124A|ENSG00000150510.11|family with sequence similarity 124A 	ENST00000280057.6|FAM124A|ENSG00000150510.11|family with sequence similarity 124A
hg19_v2_chr4_-_170533723_170533789	0.0466307	AGCCCUU	ENST00000510533.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000439128.2|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000511633.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000512193.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000507142.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1
hg19_v2_chr12_+_121837844_121837892	0.0451602	AGCCCUU	ENST00000361234.5|RNF34|ENSG00000170633.12|ring finger protein 34, E3 ubiquitin protein ligase
hg19_v2_chr9_-_127533519_127533576	0.045031	AGCCCUU	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr13_+_42622781_42622889	0.0444239	AGCCCUU	ENST00000337343.4|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000261491.5|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000379274.2|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta
hg19_v2_chr5_-_77844974_77844994	0.0434418	AGCCCUU	ENST00000515007.2|LHFPL2|ENSG00000145685.9|lipoma HMGIC fusion partner-like 2
hg19_v2_chr1_+_210001309_210001411	0.0428332	AGCCCUU	ENST00000491415.2|DIEXF|ENSG00000117597.13|digestive organ expansion factor homolog (zebrafish)
hg19_v2_chr3_-_52931557_52931623	0.0413319	AGCCCUU	ENST00000504329.1|TMEM110-MUSTN1|ENSG00000248592.3|TMEM110-MUSTN1 readthrough 	ENST00000355083.5|TMEM110|ENSG00000213533.7|transmembrane protein 110
hg19_v2_chr4_-_90229142_90229217	0.0412032	AGCCCUU	ENST00000609438.1|GPRIN3|ENSG00000185477.4|GPRIN family member 3
hg19_v2_chr17_-_73775839_73775868	0.0411577	AGCCCUU	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr13_+_108870714_108870780	0.0409435	AGCCCUU	ENST00000375898.3|ABHD13|ENSG00000139826.5|abhydrolase domain containing 13
hg19_v2_chr7_+_44240520_44240652	0.0408454	AGCCCUU	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr13_-_23949671_23949702	0.0406666	AGCCCUU	ENST00000402364.1|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr22_-_31688431_31688520	0.0405892	AGCCCUU	ENST00000402249.3|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000443175.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000215912.5|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000441972.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr4_+_85504075_85504132	0.0396903	AGCCCUU	ENST00000295887.5|CDS1|ENSG00000163624.5|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1
hg19_v2_chr5_-_100238956_100238994	0.0396599	AGCCCUU	ENST00000231461.5|ST8SIA4|ENSG00000113532.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
hg19_v2_chr2_+_187558698_187558795	0.0395659	AGCCCUU	ENST00000304698.5|FAM171B|ENSG00000144369.8|family with sequence similarity 171, member B
hg19_v2_chr10_+_70661014_70661090	0.0392097	AGCCCUU	ENST00000373585.3|DDX50|ENSG00000107625.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
hg19_v2_chr10_+_114206956_114207040	0.038535	AGCCCUU	ENST00000432306.1|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A 	ENST00000393077.2|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A
hg19_v2_chr10_+_97803151_97803348	0.038518	AGCCCUU	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr15_-_41408409_41408552	0.0382702	AGCCCUU	ENST00000361937.3|INO80|ENSG00000128908.11|INO80 complex subunit
hg19_v2_chr11_+_120195992_120196023	0.0380982	AGCCCUU	ENST00000314475.2|TMEM136|ENSG00000181264.4|transmembrane protein 136 	ENST00000529187.1|TMEM136|ENSG00000181264.4|transmembrane protein 136
hg19_v2_chr12_+_74931551_74931656	0.0377087	AGCCCUU	ENST00000519948.2|ATXN7L3B|ENSG00000253719.2|ataxin 7-like 3B
hg19_v2_chr2_-_180129484_180129574	0.0375081	AGCCCUU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr18_+_29598335_29598428	0.0364833	AGCCCUU	ENST00000217740.3|RNF125|ENSG00000101695.4|ring finger protein 125, E3 ubiquitin protein ligase
hg19_v2_chr12_-_65146636_65146651	0.0360248	AGCCCUU	ENST00000418919.2|GNS|ENSG00000135677.6|glucosamine (N-acetyl)-6-sulfatase
hg19_v2_chr14_+_56585048_56585150	0.0352286	AGCCCUU	ENST00000267460.4|PELI2|ENSG00000139946.5|pellino E3 ubiquitin protein ligase family member 2
hg19_v2_chr9_-_80646374_80646374	0.0347953	AGCCCUU	ENST00000286548.4|GNAQ|ENSG00000156052.6|guanine nucleotide binding protein (G protein), q polypeptide
hg19_v2_chr1_-_51984908_51984952	0.0346344	AGCCCUU	ENST00000371730.2|EPS15|ENSG00000085832.12|epidermal growth factor receptor pathway substrate 15
hg19_v2_chr18_-_65184217_65184217	0.034478	AGCCCUU	ENST00000310045.7|DSEL|ENSG00000171451.13|dermatan sulfate epimerase-like
hg19_v2_chr21_+_17102311_17102496	0.034003	AGCCCUU	ENST00000285679.6|USP25|ENSG00000155313.11|ubiquitin specific peptidase 25 	ENST00000351097.5|USP25|ENSG00000155313.11|ubiquitin specific peptidase 25 	ENST00000285681.2|USP25|ENSG00000155313.11|ubiquitin specific peptidase 25 	ENST00000400183.2|USP25|ENSG00000155313.11|ubiquitin specific peptidase 25
hg19_v2_chr6_+_56954867_56954882	0.0339011	AGCCCUU	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr2_+_32582086_32582106	0.0313054	AGCCCUU	ENST00000421745.2|BIRC6|ENSG00000115760.9|baculoviral IAP repeat containing 6
hg19_v2_chr9_+_140772226_140772386	0.0312164	AGCCCUU	ENST00000277551.2|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371372.1|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000277549.5|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371363.1|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371357.1|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371355.4|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit
hg19_v2_chr2_-_86564776_86564813	0.0299595	AGCCCUU	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr3_-_160283348_160283376	0.0297867	AGCCCUU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr5_-_107006596_107006651	0.0292386	AGCCCUU	ENST00000333274.6|EFNA5|ENSG00000184349.8|ephrin-A5
hg19_v2_chr2_+_45878790_45878913	0.0285395	AGCCCUU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr4_+_38665810_38665827	0.0284858	AGCCCUU	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr22_+_39966758_39966758	0.0282466	AGCCCUU	ENST00000407673.1|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000401624.1|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000404898.1|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000402142.3|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000336649.4|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000400164.3|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit
hg19_v2_chr1_+_110527308_110527349	0.0282232	AGCCCUU	ENST00000369799.5|AHCYL1|ENSG00000168710.13|adenosylhomocysteinase-like 1
hg19_v2_chr10_-_116286656_116286693	0.0279972	AGCCCUU	ENST00000428430.1|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000369266.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000392952.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr1_+_167691191_167691389	0.027948	AGCCCUU	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr9_-_21335356_21335411	0.0276583	AGCCCUU	ENST00000359039.4|KLHL9|ENSG00000198642.5|kelch-like family member 9
hg19_v2_chr15_+_44580899_44580947	0.0269871	AGCCCUU	ENST00000559222.1|CASC4|ENSG00000166734.14|cancer susceptibility candidate 4 	ENST00000299957.6|CASC4|ENSG00000166734.14|cancer susceptibility candidate 4
hg19_v2_chr11_-_1771797_1771832	0.0265166	AGCCCUU	ENST00000340134.4|IFITM10|ENSG00000244242.1|interferon induced transmembrane protein 10
hg19_v2_chr1_+_178694300_178694346	0.0259029	AGCCCUU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr5_-_39074479_39074515	0.0256053	AGCCCUU	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr17_+_30677136_30677205	0.0250141	AGCCCUU	ENST00000394670.4|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000321233.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394673.2|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000341711.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000579634.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000580759.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000342555.6|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000577908.1|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000394679.5|ZNF207|ENSG00000010244.12|zinc finger protein 207 	ENST00000582165.1|ZNF207|ENSG00000010244.12|zinc finger protein 207
hg19_v2_chr16_+_85646763_85646822	0.0247235	AGCCCUU	ENST00000411612.1|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein 	ENST00000253458.7|GSE1|ENSG00000131149.13|Gse1 coiled-coil protein
hg19_v2_chr13_+_73302047_73302073	0.0246315	AGCCCUU	ENST00000377814.2|BORA|ENSG00000136122.11|bora, aurora kinase A activator 	ENST00000377815.3|BORA|ENSG00000136122.11|bora, aurora kinase A activator 	ENST00000390667.5|BORA|ENSG00000136122.11|bora, aurora kinase A activator
hg19_v2_chr1_-_41131326_41131400	0.0244945	AGCCCUU	ENST00000372684.3|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr9_-_101471479_101471522	0.0242417	AGCCCUU	ENST00000259455.2|GABBR2|ENSG00000136928.4|gamma-aminobutyric acid (GABA) B receptor, 2
hg19_v2_chr19_+_48898132_48898132	0.0232969	AGCCCUU	ENST00000263269.3|GRIN2D|ENSG00000105464.3|glutamate receptor, ionotropic, N-methyl D-aspartate 2D
hg19_v2_chr5_+_139493665_139493718	0.023003	AGCCCUU	ENST00000331327.3|PURA|ENSG00000185129.4|purine-rich element binding protein A
hg19_v2_chr4_+_6784401_6784510	0.0213051	AGCCCUU	ENST00000425103.1|KIAA0232|ENSG00000170871.7|KIAA0232 	ENST00000307659.5|KIAA0232|ENSG00000170871.7|KIAA0232
hg19_v2_chr21_-_34144157_34144175	0.0208909	AGCCCUU	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr7_+_30323923_30324060	0.0208803	AGCCCUU	ENST00000323037.4|ZNRF2|ENSG00000180233.9|zinc and ring finger 2
hg19_v2_chr7_+_89841000_89841023	0.0204495	AGCCCUU	ENST00000287908.3|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr1_-_217804377_217804446	0.0197892	AGCCCUU	ENST00000366935.3|GPATCH2|ENSG00000092978.6|G patch domain containing 2 	ENST00000366934.3|GPATCH2|ENSG00000092978.6|G patch domain containing 2
hg19_v2_chr3_-_79068594_79068627	0.0197521	AGCCCUU	ENST00000436010.2|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr17_-_37607497_37607539	0.0193618	AGCCCUU	ENST00000394287.3|MED1|ENSG00000125686.7|mediator complex subunit 1 	ENST00000300651.6|MED1|ENSG00000125686.7|mediator complex subunit 1
hg19_v2_chr6_-_138428613_138428648	0.0184849	AGCCCUU	ENST00000421351.3|PERP|ENSG00000112378.11|PERP, TP53 apoptosis effector
hg19_v2_chr19_+_40005753_40005787	0.0181	AGCCCUU	ENST00000335426.4|SELV|ENSG00000186838.9|Selenoprotein V  	ENST00000423711.1|SELV|ENSG00000186838.9|Selenoprotein V
hg19_v2_chr2_+_24714729_24714927	0.0178922	AGCCCUU	ENST00000406961.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1 	ENST00000405141.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1
hg19_v2_chr11_-_3818932_3819022	0.0174462	AGCCCUU	ENST00000324932.7|NUP98|ENSG00000110713.11|nucleoporin 98kDa 	ENST00000359171.4|NUP98|ENSG00000110713.11|nucleoporin 98kDa
hg19_v2_chr17_+_47074758_47074787	0.0173261	AGCCCUU	ENST00000290341.3|IGF2BP1|ENSG00000159217.5|insulin-like growth factor 2 mRNA binding protein 1
hg19_v2_chr12_+_56367697_56367893	0.0164471	AGCCCUU	ENST00000553116.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000360299.5|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000548068.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000549915.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000551459.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000448789.2|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family
hg19_v2_chr17_-_38821373_38821440	0.0161211	AGCCCUU	ENST00000394052.3|KRT222|ENSG00000213424.4|keratin 222
hg19_v2_chr11_-_130184555_130184581	0.0156392	AGCCCUU	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr5_+_10564432_10564580	0.0156259	AGCCCUU	ENST00000296657.5|ANKRD33B|ENSG00000164236.7|ankyrin repeat domain 33B
hg19_v2_chr15_+_44829255_44829331	0.0155617	AGCCCUU	ENST00000261868.5|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J 	ENST00000424492.3|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J
hg19_v2_chr14_-_74253948_74253964	0.0154456	AGCCCUU	ENST00000394071.2|ELMSAN1|ENSG00000156030.8|ELM2 and Myb/SANT-like domain containing 1
hg19_v2_chr2_+_192542850_192542872	0.0152661	AGCCCUU	ENST00000410026.2|NABP1|ENSG00000173559.8|nucleic acid binding protein 1
hg19_v2_chr4_+_177241094_177241173	0.0146888	AGCCCUU	ENST00000503362.1|SPCS3|ENSG00000129128.8|signal peptidase complex subunit 3 homolog (S. cerevisiae)
hg19_v2_chr13_-_25746416_25746433	0.013774	AGCCCUU	ENST00000515384.1|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2 	ENST00000357816.2|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chrX_-_119077695_119077757	0.0136504	AGCCCUU	ENST00000371410.3|NKAP|ENSG00000101882.5|NFKB activating protein
hg19_v2_chr6_+_126277842_126277993	0.0136293	AGCCCUU	ENST00000229633.5|HINT3|ENSG00000111911.5|histidine triad nucleotide binding protein 3
hg19_v2_chr6_+_158957431_158957468	0.0135462	AGCCCUU	ENST00000367090.3|TMEM181|ENSG00000146433.8|transmembrane protein 181
hg19_v2_chr16_+_19535133_19535231	0.0134715	AGCCCUU	ENST00000396212.2|CCP110|ENSG00000103540.12|centriolar coiled coil protein 110kDa 	ENST00000381396.5|CCP110|ENSG00000103540.12|centriolar coiled coil protein 110kDa
hg19_v2_chr15_-_56535464_56535521	0.0122061	AGCCCUU	ENST00000559447.2|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000422057.1|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000317318.6|RFX7|ENSG00000181827.10|regulatory factor X, 7 	ENST00000423270.1|RFX7|ENSG00000181827.10|regulatory factor X, 7
hg19_v2_chr19_+_18747775_18747844	0.0119595	AGCCCUU	ENST00000300976.4|KLHL26|ENSG00000167487.7|kelch-like family member 26 	ENST00000595182.1|KLHL26|ENSG00000167487.7|kelch-like family member 26 	ENST00000599006.1|KLHL26|ENSG00000167487.7|kelch-like family member 26
hg19_v2_chr20_+_60718785_60718853	0.0113261	AGCCCUU	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr22_+_29279552_29279586	0.011096	AGCCCUU	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr1_+_231664390_231664479	0.0110201	AGCCCUU	ENST00000366639.4|TSNAX|ENSG00000116918.9|translin-associated factor X 	ENST00000413309.2|TSNAX|ENSG00000116918.9|translin-associated factor X
hg19_v2_chr7_-_128695147_128695203	0.0108799	AGCCCUU	ENST00000482320.1|TNPO3|ENSG00000064419.9|transportin 3 	ENST00000393245.1|TNPO3|ENSG00000064419.9|transportin 3 	ENST00000471234.1|TNPO3|ENSG00000064419.9|transportin 3
hg19_v2_chrX_+_110339439_110339605	0.0103148	AGCCCUU	ENST00000372010.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000519681.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000372007.5|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3
hg19_v2_chrX_+_151806637_151806637	0.0102892	AGCCCUU	ENST00000370306.2|GABRQ|ENSG00000147402.7|gamma-aminobutyric acid (GABA) A receptor, theta
hg19_v2_chr1_-_161102421_161102478	0.010225	AGCCCUU	ENST00000490843.2|DEDD|ENSG00000158796.12|death effector domain containing 	ENST00000368006.3|DEDD|ENSG00000158796.12|death effector domain containing 	ENST00000392188.1|DEDD|ENSG00000158796.12|death effector domain containing 	ENST00000545495.1|DEDD|ENSG00000158796.12|death effector domain containing
hg19_v2_chr20_+_43595115_43595220	0.0100678	AGCCCUU	ENST00000372806.3|STK4|ENSG00000101109.7|serine/threonine kinase 4 	ENST00000396731.4|STK4|ENSG00000101109.7|serine/threonine kinase 4 	ENST00000372801.1|STK4|ENSG00000101109.7|serine/threonine kinase 4 	ENST00000499879.2|STK4|ENSG00000101109.7|serine/threonine kinase 4
hg19_v2_chr16_-_15736953_15737025	0.00983577	AGCCCUU	ENST00000548025.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000551742.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000602337.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000344181.3|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000396368.3|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr20_-_48532019_48532045	0.00954804	AGCCCUU	ENST00000289431.5|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr11_+_7273181_7273223	0.00940128	AGCCCUU	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr1_+_173684047_173684136	0.00916871	AGCCCUU	ENST00000546011.1|KLHL20|ENSG00000076321.6|kelch-like family member 20 	ENST00000209884.4|KLHL20|ENSG00000076321.6|kelch-like family member 20
hg19_v2_chr11_-_17035943_17035990	0.0089292	AGCCCUU	ENST00000355661.3|PLEKHA7|ENSG00000166689.10|pleckstrin homology domain containing, family A member 7 	ENST00000532079.1|PLEKHA7|ENSG00000166689.10|pleckstrin homology domain containing, family A member 7 	ENST00000448080.2|PLEKHA7|ENSG00000166689.10|pleckstrin homology domain containing, family A member 7 	ENST00000531066.1|PLEKHA7|ENSG00000166689.10|pleckstrin homology domain containing, family A member 7
hg19_v2_chr9_+_129567282_129567353	0.00881678	AGCCCUU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr1_-_220445757_220445819	0.00855112	AGCCCUU	ENST00000358951.2|RAB3GAP2|ENSG00000118873.11|RAB3 GTPase activating protein subunit 2 (non-catalytic)
hg19_v2_chr21_-_32931290_32931341	0.00788599	AGCCCUU	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr4_+_72204755_72204778	0.00741102	AGCCCUU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr17_-_58469474_58469511	0.00731133	AGCCCUU	ENST00000300896.4|USP32|ENSG00000170832.8|ubiquitin specific peptidase 32
hg19_v2_chr1_-_211752073_211752084	0.00722336	AGCCCUU	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr19_-_42721819_42721883	0.00651437	AGCCCUU	ENST00000336034.4|DEDD2|ENSG00000160570.9|death effector domain containing 2 	ENST00000598200.1|DEDD2|ENSG00000160570.9|death effector domain containing 2 	ENST00000598727.1|DEDD2|ENSG00000160570.9|death effector domain containing 2 	ENST00000596251.1|DEDD2|ENSG00000160570.9|death effector domain containing 2
hg19_v2_chr14_+_59104741_59104897	0.00620937	AGCCCUU	ENST00000395153.3|DACT1|ENSG00000165617.10|dishevelled-binding antagonist of beta-catenin 1 	ENST00000335867.4|DACT1|ENSG00000165617.10|dishevelled-binding antagonist of beta-catenin 1
hg19_v2_chr15_+_38544476_38544574	0.00605534	AGCCCUU	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr2_-_183903133_183903210	0.0057736	AGCCCUU	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr1_-_108507631_108507809	0.00571386	AGCCCUU	ENST00000527011.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000370056.4|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chr15_-_75744014_75744087	0.00566108	AGCCCUU	ENST00000394947.3|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000565264.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr8_-_116681221_116681236	0.00565482	AGCCCUU	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr10_+_75504105_75504190	0.00562025	AGCCCUU	ENST00000535742.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000546025.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000345254.4|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000540668.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000339365.2|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000411652.2|SEC24C|ENSG00000176986.10|SEC24 family member C
hg19_v2_chr17_+_4487294_4487307	0.00556133	AGCCCUU	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr12_-_81331697_81331733	0.0042697	AGCCCUU	ENST00000552864.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr14_+_45553296_45553340	0.00420992	AGCCCUU	ENST00000355765.6|PRPF39|ENSG00000185246.13|pre-mRNA processing factor 39 	ENST00000553605.1|PRPF39|ENSG00000185246.13|pre-mRNA processing factor 39
hg19_v2_chr3_+_38495333_38495422	0.00378961	AGCCCUU	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr12_-_4758159_4758232	0.00348956	AGCCCUU	ENST00000545990.2|AKAP3|ENSG00000111254.3|A kinase (PRKA) anchor protein 3
hg19_v2_chr1_-_205719295_205719404	0.00328312	AGCCCUU	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr10_+_62538089_62538244	0.00316354	AGCCCUU	ENST00000519078.2|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1 	ENST00000395284.3|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1 	ENST00000316629.4|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1
hg19_v2_chr21_+_34915337_34915397	0.00260184	AGCCCUU	ENST00000290239.6|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000381692.2|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000300278.4|SON|ENSG00000159140.13|SON DNA binding protein 	ENST00000381679.4|SON|ENSG00000159140.13|SON DNA binding protein
hg19_v2_chr1_+_161087873_161087925	0.002481	AGCCCUU	ENST00000368009.2|NIT1|ENSG00000158793.9|nitrilase 1 	ENST00000368007.4|NIT1|ENSG00000158793.9|nitrilase 1 	ENST00000368008.1|NIT1|ENSG00000158793.9|nitrilase 1 	ENST00000392190.5|NIT1|ENSG00000158793.9|nitrilase 1
hg19_v2_chr1_+_178062855_178062903	0.00239658	AGCCCUU	ENST00000448150.3|RASAL2|ENSG00000075391.12|RAS protein activator like 2
hg19_v2_chr12_-_48499591_48499663	0.00189436	AGCCCUU	ENST00000551330.1|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1 	ENST00000004980.5|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1 	ENST00000339976.6|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1 	ENST00000448372.1|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1
hg19_v2_chr6_+_147525541_147525566	0.00188884	AGCCCUU	ENST00000367481.3|STXBP5|ENSG00000164506.10|syntaxin binding protein 5 (tomosyn) 	ENST00000546097.1|STXBP5|ENSG00000164506.10|syntaxin binding protein 5 (tomosyn)
hg19_v2_chr1_-_51425902_51425976	0.00149851	AGCCCUU	ENST00000396153.2|FAF1|ENSG00000185104.15|Fas (TNFRSF6) associated factor 1
hg19_v2_chr9_+_129089088_129089163	0.00135296	AGCCCUU	ENST00000361171.3|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B 	ENST00000545391.1|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr10_-_115904361_115904375	0.00103802	AGCCCUU	ENST00000428953.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118 	ENST00000543782.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118
hg19_v2_chr4_+_41937131_41937211	0.000943486	AGCCCUU	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chrX_-_53449593_53449677	0.000364949	AGCCCUU	ENST00000375340.6|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A 	ENST00000322213.4|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A
hg19_v2_chr4_+_48343339_48343414	0.000151326	AGCCCUU	ENST00000264313.6|SLAIN2|ENSG00000109171.10|SLAIN motif family, member 2
hg19_v2_chr13_-_40177261_40177339	5.08757e-05	AGCCCUU	ENST00000379589.3|LHFP|ENSG00000183722.7|lipoma HMGIC fusion partner
