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A549 cells infected with RSV Analysis Results (GEO series: GSE147507)
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Results for RARB
Z-value: 1.26
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Transcription factors associated with RARB
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RARB | hg19_v2_chr3_+_25469724_25469773 | 0.98 | 2.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr4_-_100140331 Show fit | 1.93 |
ENST00000407820.2
ENST00000394897.1 ENST00000508558.1 ENST00000394899.2 |
alcohol dehydrogenase 6 (class V) |
|
| chr9_+_67977438 Show fit | 1.88 |
ENST00000456982.1
|
Protein LOC644249 |
|
| chr7_-_98805129 Show fit | 1.35 |
ENST00000327442.6
|
karyopherin alpha 7 (importin alpha 8) |
|
| chr6_+_49431073 Show fit | 1.14 |
ENST00000335783.3
|
centromere protein Q |
|
| chr3_+_119316721 Show fit | 1.10 |
ENST00000488919.1
ENST00000495992.1 |
phospholipase A1 member A |
|
| chr22_-_37976082 Show fit | 1.02 |
ENST00000215886.4
|
lectin, galactoside-binding, soluble, 2 |
|
| chr6_-_49430886 Show fit | 1.02 |
ENST00000274813.3
|
methylmalonyl CoA mutase |
|
| chr10_-_101825151 Show fit | 0.96 |
ENST00000441382.1
|
carboxypeptidase N, polypeptide 1 |
|
| chr8_-_95274536 Show fit | 0.91 |
ENST00000297596.2
ENST00000396194.2 |
GTP binding protein overexpressed in skeletal muscle |
|
| chr3_+_119316689 Show fit | 0.91 |
ENST00000273371.4
|
phospholipase A1 member A |
Network of associatons between targets according to the STRING database.
First level regulatory network of RARB
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.8 | GO:0006069 | ethanol oxidation(GO:0006069) |
| 0.1 | 1.8 | GO:0036150 | phosphatidylserine acyl-chain remodeling(GO:0036150) |
| 0.5 | 1.4 | GO:0070512 | regulation of histone H4-K20 methylation(GO:0070510) positive regulation of histone H4-K20 methylation(GO:0070512) |
| 0.0 | 1.4 | GO:0019054 | modulation by virus of host process(GO:0019054) |
| 0.2 | 1.1 | GO:0070383 | DNA cytosine deamination(GO:0070383) |
| 0.0 | 1.1 | GO:0034080 | CENP-A containing nucleosome assembly(GO:0034080) CENP-A containing chromatin organization(GO:0061641) |
| 0.3 | 1.0 | GO:0030070 | insulin processing(GO:0030070) |
| 0.2 | 1.0 | GO:0019626 | short-chain fatty acid catabolic process(GO:0019626) |
| 0.3 | 0.9 | GO:1901842 | negative regulation of high voltage-gated calcium channel activity(GO:1901842) |
| 0.1 | 0.8 | GO:0090234 | regulation of kinetochore assembly(GO:0090234) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.6 | GO:0002080 | acrosomal membrane(GO:0002080) |
| 0.4 | 1.4 | GO:0031436 | BRCA1-BARD1 complex(GO:0031436) |
| 0.0 | 1.4 | GO:0018995 | host(GO:0018995) host cell(GO:0043657) |
| 0.0 | 0.9 | GO:0051233 | spindle midzone(GO:0051233) |
| 0.1 | 0.8 | GO:0033503 | HULC complex(GO:0033503) |
| 0.0 | 0.8 | GO:0005782 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
| 0.1 | 0.7 | GO:0046696 | lipopolysaccharide receptor complex(GO:0046696) |
| 0.0 | 0.7 | GO:0000795 | synaptonemal complex(GO:0000795) |
| 0.1 | 0.5 | GO:0098592 | cytoplasmic side of apical plasma membrane(GO:0098592) |
| 0.1 | 0.4 | GO:0098536 | deuterosome(GO:0098536) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
| 0.2 | 1.6 | GO:0052739 | phosphatidylserine 1-acylhydrolase activity(GO:0052739) |
| 0.0 | 1.4 | GO:0050681 | androgen receptor binding(GO:0050681) |
| 0.1 | 1.3 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
| 0.0 | 1.3 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
| 0.1 | 1.1 | GO:0004126 | cytidine deaminase activity(GO:0004126) |
| 0.1 | 1.0 | GO:0016936 | galactoside binding(GO:0016936) |
| 0.1 | 1.0 | GO:0031419 | cobalamin binding(GO:0031419) |
| 0.1 | 0.8 | GO:0005280 | hydrogen:amino acid symporter activity(GO:0005280) |
| 0.0 | 0.8 | GO:0016929 | SUMO-specific protease activity(GO:0016929) |
Gene overrepresentation in C2:CP category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.0 | 1.0 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 0.4 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
Gene overrepresentation in C2:CP:REACTOME category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.8 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
| 0.0 | 1.4 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.1 | 1.1 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
| 0.0 | 1.1 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
| 0.0 | 0.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.0 | 0.7 | REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 | Genes involved in IKK complex recruitment mediated by RIP1 |
| 0.0 | 0.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.0 | 0.5 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
| 0.0 | 0.4 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |