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A549 cells infected with RSV Analysis Results (GEO series: GSE147507)

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Results for NKX1-1

Z-value: 1.36

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Transcription factors associated with NKX1-1

Gene Symbol Gene ID Gene Info
ENSG00000235608.1 NK1 homeobox 1

Activity profile of NKX1-1 motif

Sorted Z-values of NKX1-1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_89442940 2.39 ENST00000527353.1
phosphatidylinositol glycan anchor biosynthesis, class Y
chr1_-_197115818 1.79 ENST00000367409.4
ENST00000294732.7
asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
chr17_-_57232596 1.47 ENST00000581068.1
ENST00000330137.7
spindle and kinetochore associated complex subunit 2
chr12_+_102513950 1.45 ENST00000378128.3
ENST00000327680.2
ENST00000541394.1
ENST00000543784.1
PARP1 binding protein
chr17_-_57232525 1.38 ENST00000583380.1
ENST00000580541.1
ENST00000578105.1
ENST00000437036.2
spindle and kinetochore associated complex subunit 2
chr17_+_57233087 1.32 ENST00000578777.1
ENST00000577457.1
ENST00000582995.1
proline rich 11
chr6_-_85473073 1.32 ENST00000606621.1
T-box 18
chr12_+_16500037 1.26 ENST00000536371.1
ENST00000010404.2
microsomal glutathione S-transferase 1
chr4_+_66536248 1.17 ENST00000514260.1
ENST00000507117.1
RP11-807H7.1
chr17_+_57232690 1.08 ENST00000262293.4
proline rich 11
chr12_+_16500599 1.05 ENST00000535309.1
ENST00000540056.1
ENST00000396209.1
ENST00000540126.1
microsomal glutathione S-transferase 1
chr3_+_158519654 0.88 ENST00000415822.2
ENST00000392813.4
ENST00000264266.8
major facilitator superfamily domain containing 1
chr19_+_32897009 0.88 ENST00000342179.5
ENST00000586427.1
dpy-19-like 3 (C. elegans)
chr2_-_239197238 0.82 ENST00000254657.3
period circadian clock 2
chr7_-_99716914 0.81 ENST00000431404.2
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
chr12_+_28410128 0.80 ENST00000381259.1
ENST00000381256.1
coiled-coil domain containing 91
chr2_-_239197201 0.80 ENST00000254658.3
period circadian clock 2
chr19_+_32896697 0.79 ENST00000586987.1
dpy-19-like 3 (C. elegans)
chr12_+_16500571 0.79 ENST00000543076.1
ENST00000396210.3
microsomal glutathione S-transferase 1
chr10_+_99205959 0.77 ENST00000352634.4
ENST00000353979.3
ENST00000370842.2
ENST00000345745.5
zinc finger, DHHC-type containing 16
chr10_+_120789223 0.73 ENST00000425699.1
nanos homolog 1 (Drosophila)
chrX_+_72783026 0.68 ENST00000373504.6
ENST00000373502.5
cysteine-rich hydrophobic domain 1
chr10_+_99205894 0.67 ENST00000370854.3
ENST00000393760.1
ENST00000414567.1
ENST00000370846.4
zinc finger, DHHC-type containing 16
chr7_-_27239703 0.65 ENST00000222753.4
homeobox A13
chr1_-_108507631 0.62 ENST00000527011.1
ENST00000370056.4
vav 3 guanine nucleotide exchange factor
chr1_+_174843548 0.59 ENST00000478442.1
ENST00000465412.1
RAB GTPase activating protein 1-like
chr1_-_159832438 0.59 ENST00000368100.1
V-set and immunoglobulin domain containing 8
chr1_-_221915418 0.58 ENST00000323825.3
ENST00000366899.3
dual specificity phosphatase 10
chr17_-_27418537 0.57 ENST00000408971.2
TGFB1-induced anti-apoptotic factor 1
chr19_+_39930212 0.57 ENST00000396843.1
Interleukin-like; Uncharacterized protein
chr12_+_102514019 0.56 ENST00000537257.1
ENST00000358383.5
ENST00000392911.2
PARP1 binding protein
chr19_+_36249044 0.54 ENST00000444637.2
ENST00000396908.4
ENST00000544099.1
chromosome 19 open reading frame 55
chr11_-_105892937 0.53 ENST00000301919.4
ENST00000534458.1
ENST00000530108.1
ENST00000530788.1
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
chr7_+_26331541 0.53 ENST00000416246.1
ENST00000338523.4
ENST00000412416.1
sorting nexin 10
chr3_-_52567792 0.52 ENST00000307092.4
ENST00000422318.2
ENST00000459839.1
5'-nucleotidase domain containing 2
chr18_-_33709268 0.51 ENST00000269187.5
ENST00000590986.1
ENST00000440549.2
solute carrier family 39 (zinc transporter), member 6
chr17_-_45266542 0.50 ENST00000531206.1
ENST00000527547.1
ENST00000446365.2
ENST00000575483.1
ENST00000066544.3
cell division cycle 27
chr14_-_88200641 0.49 ENST00000556168.1
RP11-1152H15.1
chr11_-_4629388 0.46 ENST00000526337.1
ENST00000300747.5
tripartite motif containing 68
chr16_-_66864806 0.45 ENST00000566336.1
ENST00000394074.2
ENST00000563185.2
ENST00000359087.4
ENST00000379463.2
ENST00000565535.1
ENST00000290810.3
NEDD8 activating enzyme E1 subunit 1
chr7_-_86849883 0.44 ENST00000433078.1
transmembrane protein 243, mitochondrial
chr15_+_96904487 0.43 ENST00000600790.1
Uncharacterized protein
chr10_-_1094819 0.43 ENST00000429642.1
isopentenyl-diphosphate delta isomerase 1
chr17_+_59489112 0.42 ENST00000335108.2
chromosome 17 open reading frame 82
chr5_-_159546396 0.40 ENST00000523662.1
ENST00000456329.3
ENST00000307063.7
PWWP domain containing 2A
chr4_-_54232144 0.40 ENST00000388940.4
ENST00000503450.1
ENST00000401642.3
sec1 family domain containing 2
chr8_+_26371763 0.36 ENST00000521913.1
dihydropyrimidinase-like 2
chr11_+_72983246 0.36 ENST00000393590.2
pyrimidinergic receptor P2Y, G-protein coupled, 6
chr8_+_98656693 0.36 ENST00000519934.1
metadherin
chr2_-_167232484 0.35 ENST00000375387.4
ENST00000303354.6
ENST00000409672.1
sodium channel, voltage-gated, type IX, alpha subunit
chr9_+_116225999 0.33 ENST00000317613.6
regulator of G-protein signaling 3
chr6_-_82957433 0.33 ENST00000306270.7
inhibitor of Bruton agammaglobulinemia tyrosine kinase
chrX_-_47509994 0.31 ENST00000343894.4
ELK1, member of ETS oncogene family
chr7_+_12727250 0.30 ENST00000404894.1
ADP-ribosylation factor-like 4A
chr7_-_86849836 0.30 ENST00000455575.1
transmembrane protein 243, mitochondrial
chr13_+_78315295 0.29 ENST00000351546.3
SLAIN motif family, member 1
chr13_+_36050881 0.29 ENST00000537702.1
neurobeachin
chr2_+_187371440 0.29 ENST00000445547.1
zinc finger CCCH-type containing 15
chr7_+_99717230 0.28 ENST00000262932.3
canopy FGF signaling regulator 4
chr17_-_8113886 0.27 ENST00000577833.1
ENST00000534871.1
ENST00000583915.1
ENST00000316199.6
ENST00000581511.1
ENST00000585124.1
aurora kinase B
chr3_+_57261743 0.27 ENST00000288266.3
adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
chr3_-_105587879 0.26 ENST00000264122.4
ENST00000403724.1
ENST00000405772.1
Cbl proto-oncogene B, E3 ubiquitin protein ligase
chr11_+_119205222 0.26 ENST00000311413.4
ring finger protein 26
chr7_-_73256838 0.22 ENST00000297873.4
Williams Beuren syndrome chromosome region 27
chr1_-_51796987 0.20 ENST00000262676.5
tetratricopeptide repeat domain 39A
chr9_+_124329336 0.18 ENST00000394340.3
ENST00000436835.1
ENST00000259371.2
DAB2 interacting protein
chr8_+_98656336 0.16 ENST00000336273.3
metadherin
chr4_-_87515202 0.16 ENST00000502302.1
ENST00000513186.1
mitogen-activated protein kinase 10
chr1_+_161691353 0.15 ENST00000367948.2
Fc receptor-like B
chr17_-_44439084 0.15 ENST00000575960.1
ENST00000575698.1
ENST00000571246.1
ENST00000434041.2
ENST00000570618.1
ENST00000450673.3
ADP-ribosylation factor-like 17B
chr14_-_24711764 0.14 ENST00000557921.1
ENST00000558476.1
TERF1 (TRF1)-interacting nuclear factor 2
chr11_-_71823715 0.13 ENST00000545944.1
ENST00000502597.2
anaphase promoting complex subunit 15
chr6_-_80247105 0.13 ENST00000369846.4
Leber congenital amaurosis 5
chr1_-_151762900 0.13 ENST00000440583.2
tudor and KH domain containing
chr4_+_87515454 0.12 ENST00000427191.2
ENST00000436978.1
ENST00000502971.1
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)
chr11_+_134201768 0.11 ENST00000535456.2
ENST00000339772.7
galactosidase, beta 1-like 2
chr12_-_102513843 0.11 ENST00000551744.2
ENST00000552283.1
nucleoporin 37kDa
chr19_+_36249057 0.10 ENST00000301165.5
ENST00000536950.1
ENST00000537459.1
ENST00000421853.2
chromosome 19 open reading frame 55
chr11_-_71823796 0.10 ENST00000545680.1
ENST00000543587.1
ENST00000538393.1
ENST00000535234.1
ENST00000227618.4
ENST00000535503.1
anaphase promoting complex subunit 15
chr10_-_1095050 0.10 ENST00000381344.3
isopentenyl-diphosphate delta isomerase 1
chr12_-_6961050 0.10 ENST00000538862.2
cell division cycle associated 3
chr17_-_40337470 0.09 ENST00000293330.1
hypocretin (orexin) neuropeptide precursor
chr17_-_44657017 0.09 ENST00000573185.1
ENST00000570550.1
ENST00000445552.2
ENST00000336125.5
ENST00000329240.4
ENST00000337845.7
ADP-ribosylation factor-like 17A
chr5_+_66300446 0.09 ENST00000261569.7
microtubule associated serine/threonine kinase family member 4
chr15_-_78526942 0.09 ENST00000258873.4
acyl-CoA synthetase bubblegum family member 1
chr15_-_75199213 0.08 ENST00000562698.1
family with sequence similarity 219, member B
chr2_-_47142884 0.07 ENST00000409105.1
ENST00000409973.1
ENST00000409913.1
ENST00000319466.4
multiple coagulation factor deficiency 2
chr3_+_23851928 0.07 ENST00000467766.1
ENST00000424381.1
ubiquitin-conjugating enzyme E2E 1
chr8_+_22132847 0.07 ENST00000521356.1
piwi-like RNA-mediated gene silencing 2
chr8_+_22132810 0.07 ENST00000356766.6
piwi-like RNA-mediated gene silencing 2
chr1_-_231004220 0.07 ENST00000366663.5
chromosome 1 open reading frame 198
chr8_+_94929077 0.06 ENST00000297598.4
ENST00000520614.1
pyruvate dehyrogenase phosphatase catalytic subunit 1
chr15_-_78526855 0.05 ENST00000541759.1
ENST00000558130.1
acyl-CoA synthetase bubblegum family member 1
chr15_-_64386120 0.05 ENST00000300030.3
family with sequence similarity 96, member A
chr8_+_94929168 0.04 ENST00000518107.1
ENST00000396200.3
pyruvate dehyrogenase phosphatase catalytic subunit 1
chr4_+_128554081 0.04 ENST00000335251.6
ENST00000296461.5
inturned planar cell polarity protein
chr5_+_66300464 0.04 ENST00000436277.1
microtubule associated serine/threonine kinase family member 4
chr7_+_26331678 0.02 ENST00000446848.2
sorting nexin 10
chr11_-_4629367 0.02 ENST00000533021.1
tripartite motif containing 68
chr2_-_47143160 0.01 ENST00000409800.1
ENST00000409218.1
multiple coagulation factor deficiency 2
chr4_-_103682145 0.01 ENST00000226578.4
mannosidase, beta A, lysosomal
chr20_-_50722183 0.00 ENST00000371523.4
ZFP64 zinc finger protein

Network of associatons between targets according to the STRING database.

First level regulatory network of NKX1-1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.1 GO:0071449 cellular response to lipid hydroperoxide(GO:0071449)
0.6 1.8 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.4 1.3 GO:0060827 regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060827) negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.3 1.6 GO:0019249 lactate biosynthetic process(GO:0019249) regulation of amino acid uptake involved in synaptic transmission(GO:0051941) regulation of glutamate uptake involved in transmission of nerve impulse(GO:0051946) regulation of L-glutamate import(GO:1900920)
0.2 1.7 GO:0018211 protein C-linked glycosylation(GO:0018103) peptidyl-tryptophan modification(GO:0018211) protein C-linked glycosylation via tryptophan(GO:0018317) protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan(GO:0018406)
0.1 0.6 GO:0060266 negative regulation of respiratory burst involved in inflammatory response(GO:0060266)
0.1 2.0 GO:2000042 negative regulation of double-strand break repair via homologous recombination(GO:2000042)
0.1 0.5 GO:0050993 dimethylallyl diphosphate biosynthetic process(GO:0050992) dimethylallyl diphosphate metabolic process(GO:0050993)
0.0 0.8 GO:0090160 Golgi to lysosome transport(GO:0090160)
0.0 0.1 GO:0030718 germ-line stem cell population maintenance(GO:0030718)
0.0 0.3 GO:0043988 histone H3-S28 phosphorylation(GO:0043988)
0.0 2.4 GO:0006506 GPI anchor biosynthetic process(GO:0006506)
0.0 0.2 GO:0043553 vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324) negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553)
0.0 1.4 GO:0018345 protein palmitoylation(GO:0018345)
0.0 0.4 GO:0033314 mitotic DNA replication checkpoint(GO:0033314)
0.0 0.5 GO:0071578 zinc II ion transmembrane import(GO:0071578)
0.0 0.1 GO:0051970 negative regulation of transmission of nerve impulse(GO:0051970)
0.0 0.7 GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151) positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900153)
0.0 0.3 GO:0030321 transepithelial chloride transport(GO:0030321)
0.0 0.5 GO:0071539 protein localization to centrosome(GO:0071539)
0.0 3.0 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 0.2 GO:0071394 cellular response to testosterone stimulus(GO:0071394)
0.0 0.4 GO:0048266 behavioral response to pain(GO:0048266)
0.0 0.2 GO:0007258 JUN phosphorylation(GO:0007258)
0.0 0.8 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.0 0.6 GO:0030890 positive regulation of B cell proliferation(GO:0030890)
0.0 0.2 GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090266) regulation of mitotic spindle checkpoint(GO:1903504)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.8 GO:0072687 meiotic spindle(GO:0072687)
0.2 2.4 GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506)
0.2 2.9 GO:0000940 condensed chromosome outer kinetochore(GO:0000940)
0.1 0.2 GO:1990032 parallel fiber(GO:1990032)
0.0 0.5 GO:0031313 extrinsic component of endosome membrane(GO:0031313)
0.0 0.5 GO:0046581 intercellular canaliculus(GO:0046581)
0.0 0.3 GO:0032133 chromosome passenger complex(GO:0032133)
0.0 0.1 GO:1990923 PET complex(GO:1990923)
0.0 3.1 GO:0035577 azurophil granule membrane(GO:0035577)
0.0 0.4 GO:0001518 voltage-gated sodium channel complex(GO:0001518)
0.0 0.7 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 1.5 GO:0005637 nuclear inner membrane(GO:0005637)
0.0 0.1 GO:0071547 piP-body(GO:0071547)
0.0 0.3 GO:0033276 transcription factor TFTC complex(GO:0033276)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0019781 NEDD8 activating enzyme activity(GO:0019781)
0.1 3.1 GO:0043295 glutathione binding(GO:0043295)
0.1 0.5 GO:0004452 isopentenyl-diphosphate delta-isomerase activity(GO:0004452)
0.1 0.4 GO:0004157 dihydropyrimidinase activity(GO:0004157)
0.1 0.3 GO:0030292 protein tyrosine kinase inhibitor activity(GO:0030292)
0.0 1.6 GO:0000030 mannosyltransferase activity(GO:0000030)
0.0 1.4 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.6 GO:0048273 mitogen-activated protein kinase p38 binding(GO:0048273)
0.0 0.3 GO:0035174 histone serine kinase activity(GO:0035174)
0.0 0.1 GO:0034584 piRNA binding(GO:0034584)
0.0 0.3 GO:0071553 uridine nucleotide receptor activity(GO:0015065) UDP-activated nucleotide receptor activity(GO:0045029) G-protein coupled pyrimidinergic nucleotide receptor activity(GO:0071553)
0.0 0.2 GO:0035662 Toll-like receptor 4 binding(GO:0035662)
0.0 1.3 GO:0001106 RNA polymerase II transcription corepressor activity(GO:0001106)
0.0 0.3 GO:0017162 aryl hydrocarbon receptor binding(GO:0017162)
0.0 0.2 GO:0004705 JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909)
0.0 0.3 GO:0043422 protein kinase B binding(GO:0043422)
0.0 0.4 GO:0005248 voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030)
0.0 0.6 GO:0030676 Rac guanyl-nucleotide exchange factor activity(GO:0030676)
0.0 0.5 GO:0005545 1-phosphatidylinositol binding(GO:0005545)
0.0 0.5 GO:0051059 NF-kappaB binding(GO:0051059)
0.0 0.7 GO:0030371 translation repressor activity(GO:0030371)
0.0 0.5 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)

Gene overrepresentation in C2:CP category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.5 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 0.8 SA B CELL RECEPTOR COMPLEXES Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases.
0.0 0.7 ST JNK MAPK PATHWAY JNK MAPK Pathway

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 3.1 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.0 1.5 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.0 3.2 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 0.6 REACTOME INHIBITION OF THE PROTEOLYTIC ACTIVITY OF APC C REQUIRED FOR THE ONSET OF ANAPHASE BY MITOTIC SPINDLE CHECKPOINT COMPONENTS Genes involved in Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components
0.0 0.3 REACTOME ROLE OF DCC IN REGULATING APOPTOSIS Genes involved in Role of DCC in regulating apoptosis
0.0 0.5 REACTOME ZINC TRANSPORTERS Genes involved in Zinc transporters
0.0 0.2 REACTOME ERK MAPK TARGETS Genes involved in ERK/MAPK targets
0.0 0.3 REACTOME P2Y RECEPTORS Genes involved in P2Y receptors