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A549 cells infected with RSV Analysis Results (GEO series: GSE147507)
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Results for GGACGGA
Z-value: 0.15
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miRNA associated with seed GGACGGA
| Name | miRBASE accession |
|---|---|
|
hsa-miR-184
|
MIMAT0000454 |
Activity profile of GGACGGA motif
Sorted Z-values of GGACGGA motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr22_-_39268308 | 0.06 |
ENST00000407418.3
|
CBX6
|
chromobox homolog 6 |
| chr1_-_19229248 | 0.06 |
ENST00000375341.3
|
ALDH4A1
|
aldehyde dehydrogenase 4 family, member A1 |
| chr11_-_796197 | 0.03 |
ENST00000530360.1
ENST00000528606.1 ENST00000320230.5 |
SLC25A22
|
solute carrier family 25 (mitochondrial carrier: glutamate), member 22 |
| chr6_+_117996621 | 0.03 |
ENST00000368494.3
|
NUS1
|
nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) |
| chr11_+_117049445 | 0.02 |
ENST00000324225.4
ENST00000532960.1 |
SIDT2
|
SID1 transmembrane family, member 2 |
| chr12_+_53574464 | 0.02 |
ENST00000416904.3
|
ZNF740
|
zinc finger protein 740 |
| chr22_+_40573921 | 0.01 |
ENST00000454349.2
ENST00000335727.9 |
TNRC6B
|
trinucleotide repeat containing 6B |
| chr4_-_174451370 | 0.01 |
ENST00000359562.4
|
HAND2
|
heart and neural crest derivatives expressed 2 |
| chr19_+_3359561 | 0.01 |
ENST00000589123.1
ENST00000346156.5 ENST00000395111.3 ENST00000586919.1 |
NFIC
|
nuclear factor I/C (CCAAT-binding transcription factor) |
| chr11_-_64546202 | 0.00 |
ENST00000377390.3
ENST00000227503.9 ENST00000377394.3 ENST00000422298.2 ENST00000334944.5 |
SF1
|
splicing factor 1 |
| chr12_+_121124599 | 0.00 |
ENST00000228506.3
|
MLEC
|
malectin |
| chr19_+_56116771 | 0.00 |
ENST00000568956.1
|
ZNF865
|
zinc finger protein 865 |
Network of associatons between targets according to the STRING database.
First level regulatory network of GGACGGA
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0019470 | 4-hydroxyproline catabolic process(GO:0019470) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0003842 | 1-pyrroline-5-carboxylate dehydrogenase activity(GO:0003842) |