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A549 cells infected with RSV Analysis Results (GEO series: GSE147507)

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Results for CCAGCAU

Z-value: 0.29

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miRNA associated with seed CCAGCAU

NamemiRBASE accession
hsa-miR-338-3p
MIMAT0000763

Activity profile of CCAGCAU motif

Sorted Z-values of CCAGCAU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr11_+_111473108 0.08 ENST00000304987.3
SIK2
salt-inducible kinase 2
chr16_-_51185149 0.08 ENST00000566102.1
ENST00000541611.1
SALL1
spalt-like transcription factor 1
chr3_-_176914238 0.07 ENST00000430069.1
ENST00000428970.1
TBL1XR1
transducin (beta)-like 1 X-linked receptor 1
chr1_+_61547894 0.07 ENST00000403491.3
NFIA
nuclear factor I/A
chr3_+_118892362 0.07 ENST00000497685.1
ENST00000264234.3
UPK1B
uroplakin 1B
chr15_+_39873268 0.06 ENST00000397591.2
ENST00000260356.5
THBS1
thrombospondin 1
chr6_-_116601044 0.06 ENST00000368608.3
TSPYL1
TSPY-like 1
chr2_+_28974668 0.05 ENST00000296122.6
ENST00000395366.2
PPP1CB
protein phosphatase 1, catalytic subunit, beta isozyme
chr6_+_63921351 0.05 ENST00000370659.1
FKBP1C
FK506 binding protein 1C
chr18_-_72921303 0.05 ENST00000322342.3
ZADH2
zinc binding alcohol dehydrogenase domain containing 2
chr16_+_67063036 0.05 ENST00000290858.6
ENST00000564034.1
CBFB
core-binding factor, beta subunit
chrX_+_123095155 0.04 ENST00000371160.1
ENST00000435103.1
STAG2
stromal antigen 2
chr11_+_4116005 0.04 ENST00000300738.5
RRM1
ribonucleotide reductase M1
chr17_-_40950698 0.04 ENST00000328434.7
COA3
cytochrome c oxidase assembly factor 3
chr1_+_27153173 0.04 ENST00000374142.4
ZDHHC18
zinc finger, DHHC-type containing 18
chr8_+_37654424 0.04 ENST00000315215.7
GPR124
G protein-coupled receptor 124
chr15_+_73976545 0.04 ENST00000318443.5
ENST00000537340.2
ENST00000318424.5
CD276
CD276 molecule
chr8_+_6565854 0.04 ENST00000285518.6
AGPAT5
1-acylglycerol-3-phosphate O-acyltransferase 5
chr3_-_9291063 0.04 ENST00000383836.3
SRGAP3
SLIT-ROBO Rho GTPase activating protein 3
chr11_-_73309228 0.04 ENST00000356467.4
ENST00000064778.4
FAM168A
family with sequence similarity 168, member A
chr18_-_56985776 0.03 ENST00000587244.1
CPLX4
complexin 4
chr16_+_50187556 0.03 ENST00000561678.1
ENST00000357464.3
PAPD5
PAP associated domain containing 5
chr22_-_44894178 0.03 ENST00000341255.3
LDOC1L
leucine zipper, down-regulated in cancer 1-like
chr10_+_28966271 0.03 ENST00000375533.3
BAMBI
BMP and activin membrane-bound inhibitor
chr7_+_139026057 0.03 ENST00000541515.3
LUC7L2
LUC7-like 2 (S. cerevisiae)
chr12_-_54982420 0.03 ENST00000257905.8
PPP1R1A
protein phosphatase 1, regulatory (inhibitor) subunit 1A
chrX_-_152864632 0.03 ENST00000406277.2
FAM58A
family with sequence similarity 58, member A
chr2_-_152684977 0.03 ENST00000428992.2
ENST00000295087.8
ARL5A
ADP-ribosylation factor-like 5A
chrX_+_49126294 0.03 ENST00000466508.1
ENST00000438316.1
ENST00000055335.6
ENST00000495799.1
PPP1R3F
protein phosphatase 1, regulatory subunit 3F
chr1_-_51763661 0.03 ENST00000530004.1
TTC39A
tetratricopeptide repeat domain 39A
chr6_-_116575226 0.03 ENST00000420283.1
TSPYL4
TSPY-like 4
chr2_-_105946491 0.03 ENST00000393359.2
TGFBRAP1
transforming growth factor, beta receptor associated protein 1
chr17_+_43971643 0.03 ENST00000344290.5
ENST00000262410.5
ENST00000351559.5
ENST00000340799.5
ENST00000535772.1
ENST00000347967.5
MAPT
microtubule-associated protein tau
chr9_-_123964114 0.03 ENST00000373840.4
RAB14
RAB14, member RAS oncogene family
chr1_-_205091115 0.03 ENST00000264515.6
ENST00000367164.1
RBBP5
retinoblastoma binding protein 5
chr2_-_85555385 0.03 ENST00000377386.3
TGOLN2
trans-golgi network protein 2
chr5_+_60628074 0.03 ENST00000252744.5
ZSWIM6
zinc finger, SWIM-type containing 6
chr1_+_109656579 0.03 ENST00000526264.1
ENST00000369939.3
KIAA1324
KIAA1324
chr1_-_108507631 0.02 ENST00000527011.1
ENST00000370056.4
VAV3
vav 3 guanine nucleotide exchange factor
chr12_-_113574028 0.02 ENST00000546530.1
ENST00000261729.5
RASAL1
RAS protein activator like 1 (GAP1 like)
chr5_+_175223313 0.02 ENST00000359546.4
CPLX2
complexin 2
chr1_-_51425902 0.02 ENST00000396153.2
FAF1
Fas (TNFRSF6) associated factor 1
chr9_+_124413873 0.02 ENST00000408936.3
DAB2IP
DAB2 interacting protein
chr3_+_107241783 0.02 ENST00000415149.2
ENST00000402543.1
ENST00000325805.8
ENST00000427402.1
BBX
bobby sox homolog (Drosophila)
chr1_+_109792641 0.02 ENST00000271332.3
CELSR2
cadherin, EGF LAG seven-pass G-type receptor 2
chr22_+_40573921 0.02 ENST00000454349.2
ENST00000335727.9
TNRC6B
trinucleotide repeat containing 6B
chr4_+_41992489 0.02 ENST00000264451.7
SLC30A9
solute carrier family 30 (zinc transporter), member 9
chr3_-_114790179 0.02 ENST00000462705.1
ZBTB20
zinc finger and BTB domain containing 20
chr7_+_44084262 0.02 ENST00000456905.1
ENST00000440166.1
ENST00000452943.1
ENST00000468694.1
ENST00000494774.1
ENST00000490734.2
DBNL
drebrin-like
chr8_+_38614807 0.02 ENST00000330691.6
ENST00000348567.4
TACC1
transforming, acidic coiled-coil containing protein 1
chr1_-_38273840 0.02 ENST00000373044.2
YRDC
yrdC N(6)-threonylcarbamoyltransferase domain containing
chr1_+_229440129 0.02 ENST00000366688.3
SPHAR
S-phase response (cyclin related)
chr5_+_134240800 0.02 ENST00000512783.1
PCBD2
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
chr3_-_71774516 0.02 ENST00000425534.3
EIF4E3
eukaryotic translation initiation factor 4E family member 3
chr14_+_65171099 0.02 ENST00000247226.7
PLEKHG3
pleckstrin homology domain containing, family G (with RhoGef domain) member 3
chr1_+_164528866 0.02 ENST00000420696.2
PBX1
pre-B-cell leukemia homeobox 1
chr2_-_119605253 0.02 ENST00000295206.6
EN1
engrailed homeobox 1
chr1_+_154975110 0.02 ENST00000535420.1
ENST00000368426.3
ZBTB7B
zinc finger and BTB domain containing 7B
chr6_-_99963252 0.02 ENST00000392738.2
ENST00000327681.6
ENST00000472914.2
USP45
ubiquitin specific peptidase 45
chr2_-_152955537 0.02 ENST00000201943.5
ENST00000539935.1
CACNB4
calcium channel, voltage-dependent, beta 4 subunit
chrX_-_54522558 0.02 ENST00000375135.3
FGD1
FYVE, RhoGEF and PH domain containing 1
chr1_+_244214577 0.02 ENST00000358704.4
ZBTB18
zinc finger and BTB domain containing 18
chr2_-_96811170 0.02 ENST00000288943.4
DUSP2
dual specificity phosphatase 2
chr1_+_201798269 0.01 ENST00000361565.4
IPO9
importin 9
chr12_+_65563329 0.01 ENST00000308330.2
LEMD3
LEM domain containing 3
chr5_+_61602055 0.01 ENST00000381103.2
KIF2A
kinesin heavy chain member 2A
chr10_-_70287231 0.01 ENST00000609923.1
SLC25A16
solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
chr9_-_86571628 0.01 ENST00000376344.3
C9orf64
chromosome 9 open reading frame 64
chr10_-_88281494 0.01 ENST00000298767.5
WAPAL
wings apart-like homolog (Drosophila)
chr6_+_125283566 0.01 ENST00000521654.2
RNF217
ring finger protein 217
chr18_-_9614515 0.01 ENST00000400556.3
ENST00000400555.3
PPP4R1
protein phosphatase 4, regulatory subunit 1
chr16_+_68771128 0.01 ENST00000261769.5
ENST00000422392.2
CDH1
cadherin 1, type 1, E-cadherin (epithelial)
chr17_-_27621125 0.01 ENST00000579665.1
ENST00000225388.4
NUFIP2
nuclear fragile X mental retardation protein interacting protein 2
chr11_-_129062093 0.01 ENST00000310343.9
ARHGAP32
Rho GTPase activating protein 32
chr10_+_73975742 0.01 ENST00000299381.4
ANAPC16
anaphase promoting complex subunit 16
chr2_+_113239710 0.01 ENST00000233336.6
TTL
tubulin tyrosine ligase
chr3_-_123304017 0.01 ENST00000383657.5
PTPLB
protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
chr20_+_20348740 0.01 ENST00000310227.1
INSM1
insulinoma-associated 1
chrX_+_109246285 0.01 ENST00000372073.1
ENST00000372068.2
ENST00000288381.4
TMEM164
transmembrane protein 164
chr2_+_64681219 0.01 ENST00000238875.5
LGALSL
lectin, galactoside-binding-like
chr11_-_10562710 0.01 ENST00000528665.1
ENST00000265981.2
RNF141
ring finger protein 141
chr2_+_48010221 0.01 ENST00000234420.5
MSH6
mutS homolog 6
chr1_+_32645269 0.01 ENST00000373610.3
TXLNA
taxilin alpha
chr8_+_21915368 0.01 ENST00000265800.5
ENST00000517418.1
DMTN
dematin actin binding protein
chr9_+_115513003 0.01 ENST00000374232.3
SNX30
sorting nexin family member 30
chr3_-_14166316 0.01 ENST00000396914.3
ENST00000295767.5
CHCHD4
coiled-coil-helix-coiled-coil-helix domain containing 4
chr5_+_158690089 0.01 ENST00000296786.6
UBLCP1
ubiquitin-like domain containing CTD phosphatase 1
chr3_+_29322803 0.01 ENST00000396583.3
ENST00000383767.2
RBMS3
RNA binding motif, single stranded interacting protein 3
chr5_+_43602750 0.01 ENST00000505678.2
ENST00000512422.1
ENST00000264663.5
NNT
nicotinamide nucleotide transhydrogenase
chr8_+_77593448 0.01 ENST00000521891.2
ZFHX4
zinc finger homeobox 4
chr10_-_75634260 0.01 ENST00000372765.1
ENST00000351293.3
CAMK2G
calcium/calmodulin-dependent protein kinase II gamma
chr6_-_31869769 0.01 ENST00000375527.2
ZBTB12
zinc finger and BTB domain containing 12
chr20_+_47538357 0.01 ENST00000371917.4
ARFGEF2
ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
chr18_-_53255766 0.01 ENST00000566286.1
ENST00000564999.1
ENST00000566279.1
ENST00000354452.3
ENST00000356073.4
TCF4
transcription factor 4
chr10_+_89622870 0.01 ENST00000371953.3
PTEN
phosphatase and tensin homolog
chr3_+_238273 0.01 ENST00000256509.2
CHL1
cell adhesion molecule L1-like
chr9_-_14693417 0.01 ENST00000380916.4
ZDHHC21
zinc finger, DHHC-type containing 21
chr9_-_86153218 0.01 ENST00000304195.3
ENST00000376438.1
FRMD3
FERM domain containing 3
chr9_+_125026882 0.01 ENST00000297908.3
ENST00000373730.3
ENST00000546115.1
ENST00000344641.3
MRRF
mitochondrial ribosome recycling factor
chr14_+_23775971 0.01 ENST00000250405.5
BCL2L2
BCL2-like 2
chr4_-_142053952 0.01 ENST00000515673.2
RNF150
ring finger protein 150
chr1_-_203320617 0.01 ENST00000354955.4
FMOD
fibromodulin
chr1_-_115053781 0.01 ENST00000358465.2
ENST00000369543.2
TRIM33
tripartite motif containing 33
chr9_-_136933134 0.01 ENST00000303407.7
BRD3
bromodomain containing 3
chr5_-_36152031 0.01 ENST00000296603.4
LMBRD2
LMBR1 domain containing 2
chr4_+_48018781 0.01 ENST00000295461.5
NIPAL1
NIPA-like domain containing 1
chr5_+_141488070 0.01 ENST00000253814.4
NDFIP1
Nedd4 family interacting protein 1
chr12_-_12674032 0.01 ENST00000298573.4
DUSP16
dual specificity phosphatase 16
chr10_-_102279586 0.01 ENST00000370345.3
ENST00000451524.1
ENST00000370329.5
SEC31B
SEC31 homolog B (S. cerevisiae)
chr14_+_67826709 0.01 ENST00000256383.4
EIF2S1
eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
chr12_+_74931551 0.00 ENST00000519948.2
ATXN7L3B
ataxin 7-like 3B
chr2_-_69870835 0.00 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr15_-_75249793 0.00 ENST00000322177.5
RPP25
ribonuclease P/MRP 25kDa subunit
chr10_-_105615164 0.00 ENST00000355946.2
ENST00000369774.4
SH3PXD2A
SH3 and PX domains 2A
chr1_+_153606513 0.00 ENST00000368694.3
CHTOP
chromatin target of PRMT1
chr7_-_26240357 0.00 ENST00000354667.4
ENST00000356674.7
HNRNPA2B1
heterogeneous nuclear ribonucleoprotein A2/B1
chr7_+_72349920 0.00 ENST00000395270.1
ENST00000446813.1
ENST00000257622.4
POM121
POM121 transmembrane nucleoporin
chr19_+_1752372 0.00 ENST00000382349.4
ONECUT3
one cut homeobox 3
chr3_+_49591881 0.00 ENST00000296452.4
BSN
bassoon presynaptic cytomatrix protein
chr15_+_45422131 0.00 ENST00000321429.4
DUOX1
dual oxidase 1
chr22_-_22221900 0.00 ENST00000215832.6
ENST00000398822.3
MAPK1
mitogen-activated protein kinase 1
chr17_+_26698677 0.00 ENST00000457710.3
SARM1
sterile alpha and TIR motif containing 1
chr14_-_36989427 0.00 ENST00000354822.5
NKX2-1
NK2 homeobox 1
chr16_-_20911641 0.00 ENST00000564349.1
ENST00000324344.4
ERI2
DCUN1D3
ERI1 exoribonuclease family member 2
DCN1, defective in cullin neddylation 1, domain containing 3
chr12_-_10875831 0.00 ENST00000279550.7
ENST00000228251.4
YBX3
Y box binding protein 3
chr4_-_25162188 0.00 ENST00000302922.3
SEPSECS
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
chr2_-_220094294 0.00 ENST00000436856.1
ENST00000428226.1
ENST00000409422.1
ENST00000431715.1
ENST00000457841.1
ENST00000439812.1
ENST00000361242.4
ENST00000396761.2
ATG9A
autophagy related 9A
chr1_-_40137710 0.00 ENST00000235628.1
NT5C1A
5'-nucleotidase, cytosolic IA
chr15_+_85359911 0.00 ENST00000258888.5
ALPK3
alpha-kinase 3
chr14_+_103243813 0.00 ENST00000560371.1
ENST00000347662.4
ENST00000392745.2
ENST00000539721.1
ENST00000560463.1
TRAF3
TNF receptor-associated factor 3
chr17_+_46125707 0.00 ENST00000584137.1
ENST00000362042.3
ENST00000585291.1
ENST00000357480.5
NFE2L1
nuclear factor, erythroid 2-like 1
chr1_-_28415204 0.00 ENST00000373871.3
EYA3
eyes absent homolog 3 (Drosophila)
chr9_-_111929560 0.00 ENST00000561981.2
FRRS1L
ferric-chelate reductase 1-like
chr18_-_31803435 0.00 ENST00000589544.1
ENST00000269185.4
ENST00000261592.5
NOL4
nucleolar protein 4
chr21_+_34915337 0.00 ENST00000290239.6
ENST00000381692.2
ENST00000300278.4
ENST00000381679.4
SON
SON DNA binding protein
chr9_+_35749203 0.00 ENST00000456972.2
ENST00000378078.4
RGP1
RGP1 retrograde golgi transport homolog (S. cerevisiae)
chr12_+_54891495 0.00 ENST00000293373.6
NCKAP1L
NCK-associated protein 1-like

Network of associatons between targets according to the STRING database.

First level regulatory network of CCAGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0002605 negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) negative regulation of dendritic cell antigen processing and presentation(GO:0002605)
0.0 0.1 GO:0021553 olfactory nerve development(GO:0021553) olfactory bulb mitral cell layer development(GO:0061034)
0.0 0.0 GO:1905051 regulation of base-excision repair(GO:1905051) positive regulation of base-excision repair(GO:1905053)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0070051 fibrinogen binding(GO:0070051)
0.0 0.1 GO:0050115 myosin-light-chain-phosphatase activity(GO:0050115)