hg19_v2_chr11_+_118754475_118754552	0.00657349	UGACCUA	ENST00000292174.4|CXCR5|ENSG00000160683.4|chemokine (C-X-C motif) receptor 5
hg19_v2_chr11_-_64684672_64684722	0.00539199	UGACCUA	ENST00000377264.3|ATG2A|ENSG00000110046.8|autophagy related 2A 	ENST00000421419.2|ATG2A|ENSG00000110046.8|autophagy related 2A
hg19_v2_chr20_-_36156125_36156250	0.00511682	UGACCUA	ENST00000397135.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000397137.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr15_+_75940218_75940298	0.00441536	UGACCUA	ENST00000308527.5|SNX33|ENSG00000173548.8|sorting nexin 33
hg19_v2_chr1_-_9970227_9970356	0.00427797	UGACCUA	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr22_-_50746027_50746082	0.0039942	UGACCUA	ENST00000425954.1|PLXNB2|ENSG00000196576.10|plexin B2 	ENST00000449103.1|PLXNB2|ENSG00000196576.10|plexin B2
hg19_v2_chr5_+_42756903_42756963	0.00357696	UGACCUA	ENST00000361970.5|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152 	ENST00000388827.4|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152
hg19_v2_chr3_-_32022733_32022809	0.00351845	UGACCUA	ENST00000438237.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10 	ENST00000396556.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10
hg19_v2_chr1_+_181057638_181057692	0.00333546	UGACCUA	ENST00000367577.4|IER5|ENSG00000162783.8|immediate early response 5
hg19_v2_chr19_-_49576198_49576198	0.00329752	UGACCUA	ENST00000221444.1|KCNA7|ENSG00000104848.1|potassium voltage-gated channel, shaker-related subfamily, member 7
hg19_v2_chr7_+_28452130_28452154	0.00278736	UGACCUA	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr9_-_127533519_127533576	0.00266562	UGACCUA	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr9_+_137533615_137533660	0.00256408	UGACCUA	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr12_+_56137064_56137183	0.00255709	UGACCUA	ENST00000257868.5|GDF11|ENSG00000135414.5|growth differentiation factor 11 	ENST00000546799.1|GDF11|ENSG00000135414.5|growth differentiation factor 11
hg19_v2_chr2_-_25475120_25475180	0.00203842	UGACCUA	ENST00000380746.4|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha 	ENST00000402667.1|DNMT3A|ENSG00000119772.12|DNA (cytosine-5-)-methyltransferase 3 alpha
hg19_v2_chr2_-_166930131_166930149	0.00200778	UGACCUA	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr20_-_58515344_58515366	0.00193391	UGACCUA	ENST00000370996.3|PPP1R3D|ENSG00000132825.5|protein phosphatase 1, regulatory subunit 3D
hg19_v2_chr2_+_26915584_26915634	0.00190129	UGACCUA	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr1_+_151043070_151043110	0.00184822	UGACCUA	ENST00000368918.3|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2 	ENST00000368917.1|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2
hg19_v2_chr17_-_33448468_33448513	0.00173785	UGACCUA	ENST00000591723.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein  	ENST00000587405.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000593039.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein
hg19_v2_chr1_+_150122034_150122170	0.00165607	UGACCUA	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr12_+_48592134_48592170	0.00163204	UGACCUA	ENST00000595310.1|DKFZP779L1853|ENSG00000269514.1|DKFZP779L1853
hg19_v2_chr16_-_73082274_73082274	0.00162059	UGACCUA	ENST00000268489.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr3_+_38495333_38495422	0.00160891	UGACCUA	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr5_-_56778635_56778640	0.00154118	UGACCUA	ENST00000423391.1|ACTBL2|ENSG00000169067.2|actin, beta-like 2
hg19_v2_chr3_+_11314099_11314122	0.00153431	UGACCUA	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr21_-_39288743_39288765	0.00145729	UGACCUA	ENST00000609713.1|KCNJ6|ENSG00000157542.8|potassium inwardly-rectifying channel, subfamily J, member 6
hg19_v2_chr7_+_97736197_97736211	0.00141297	UGACCUA	ENST00000297293.5|LMTK2|ENSG00000164715.5|lemur tyrosine kinase 2
hg19_v2_chr8_-_89339705_89339721	0.00124945	UGACCUA	ENST00000286614.6|MMP16|ENSG00000156103.11|matrix metallopeptidase 16 (membrane-inserted)
hg19_v2_chr17_+_38024417_38024478	0.0011688	UGACCUA	ENST00000348931.4|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000583811.1|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000584588.1|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000377940.3|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2
hg19_v2_chr6_+_146864829_146864881	0.00116275	UGACCUA	ENST00000367495.3|RAB32|ENSG00000118508.4|RAB32, member RAS oncogene family
hg19_v2_chr10_-_79686284_79686527	0.0011538	UGACCUA	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chr17_+_39845134_39845145	0.00107788	UGACCUA	ENST00000591776.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1 	ENST00000469257.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1
hg19_v2_chr2_+_182850551_182850607	0.00106902	UGACCUA	ENST00000452904.1|PPP1R1C|ENSG00000150722.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENST00000409137.3|PPP1R1C|ENSG00000150722.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENST00000280295.3|PPP1R1C|ENSG00000150722.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
hg19_v2_chr3_-_113465065_113465147	0.00106285	UGACCUA	ENST00000497255.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000478020.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000240922.3|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000493900.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit
hg19_v2_chr19_+_30863271_30863338	0.00104533	UGACCUA	ENST00000355537.3|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr3_-_114790179_114790222	0.000985446	UGACCUA	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr1_+_10271674_10271674	0.000970536	UGACCUA	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr6_-_42419649_42419789	0.000969685	UGACCUA	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr6_-_116381918_116381977	0.000939957	UGACCUA	ENST00000606080.1|FRK|ENSG00000111816.6|fyn-related kinase
hg19_v2_chr1_+_233749739_233749761	0.000878579	UGACCUA	ENST00000366621.3|KCNK1|ENSG00000135750.10|potassium channel, subfamily K, member 1
hg19_v2_chr1_+_28995231_28995250	0.000784328	UGACCUA	ENST00000373816.1|GMEB1|ENSG00000162419.8|glucocorticoid modulatory element binding protein 1
hg19_v2_chr21_-_36260980_36261011	0.000667405	UGACCUA	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr17_+_27717415_27717618	0.000662067	UGACCUA	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr8_+_61591337_61591393	0.000595428	UGACCUA	ENST00000423902.2|CHD7|ENSG00000171316.7|chromodomain helicase DNA binding protein 7
hg19_v2_chr15_+_89631381_89631391	0.000449286	UGACCUA	ENST00000352732.5|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr11_+_35684288_35684353	0.000334091	UGACCUA	ENST00000299413.5|TRIM44|ENSG00000166326.5|tripartite motif containing 44
hg19_v2_chr11_+_119076745_119076792	0.000305492	UGACCUA	ENST00000264033.4|CBL|ENSG00000110395.4|Cbl proto-oncogene, E3 ubiquitin protein ligase
hg19_v2_chr5_+_49961727_49961740	0.000294258	UGACCUA	ENST00000505697.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503750.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000514342.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr10_+_73975742_73975830	0.000281536	UGACCUA	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr18_+_54318616_54318640	0.000271377	UGACCUA	ENST00000254442.3|WDR7|ENSG00000091157.9|WD repeat domain 7
hg19_v2_chrX_-_63425561_63425624	0.000260647	UGACCUA	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr6_+_123317116_123317260	0.000229122	UGACCUA	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr17_+_2699697_2699776	0.000216511	UGACCUA	ENST00000254695.8|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000366401.4|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000542807.1|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2
hg19_v2_chr22_-_22221900_22221970	0.000185165	UGACCUA	ENST00000215832.6|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1 	ENST00000398822.3|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1
hg19_v2_chr9_-_35665165_35665284	0.00016923	UGACCUA	ENST00000343259.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39 	ENST00000378387.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39
hg19_v2_chr2_+_115199876_115199919	0.000162132	UGACCUA	ENST00000436732.1|DPP10|ENSG00000175497.12|dipeptidyl-peptidase 10 (non-functional) 	ENST00000410059.1|DPP10|ENSG00000175497.12|dipeptidyl-peptidase 10 (non-functional)
hg19_v2_chr5_+_173315283_173315335	0.000113828	UGACCUA	ENST00000265085.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chr10_-_99052382_99052413	9.44249e-05	UGACCUA	ENST00000453547.2|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000466484.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000316676.8|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358308.3|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358531.4|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr12_-_51420128_51420183	5.27619e-05	UGACCUA	ENST00000262051.7|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000547732.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000262052.5|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000546488.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000550714.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000548193.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000547579.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 	ENST00000546743.1|SLC11A2|ENSG00000110911.10|solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
hg19_v2_chr12_+_52203789_52203789	3.869e-05	UGACCUA	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
