hg19_v2_chr4_+_26322987_26323031	0.328324	SOX3_SOX2	ENST00000505958.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr13_+_111365602_111365625	0.324123	SOX3_SOX2	ENST00000333219.7|ING1|ENSG00000153487.11|inhibitor of growth family, member 1
hg19_v2_chr15_+_101402041_101402067	0.304471	SOX3_SOX2	ENST00000558475.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000558641.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000559673.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1
hg19_v2_chr5_-_65018834_65018863	0.295618	SOX3_SOX2	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr10_-_18948208_18948219	0.288982	SOX3_SOX2	ENST00000607346.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr14_-_51027838_51027851	0.28508	SOX3_SOX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr12_+_95611536_95611543	0.279198	SOX3_SOX2	ENST00000549002.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr17_+_65374075_65374271	0.277074	SOX3_SOX2	ENST00000581322.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr12_-_95611149_95611249	0.275903	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr11_-_8892464_8892677	0.27555	SOX3_SOX2	ENST00000527347.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526241.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526126.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000530938.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526057.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5
hg19_v2_chr11_-_46848393_46848439	0.249314	SOX3_SOX2	ENST00000526496.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr15_+_52311398_52311461	0.239	SOX3_SOX2	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr4_+_146403912_146403972	0.238215	SOX3_SOX2	ENST00000507367.1|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000394092.2|SMAD1|ENSG00000170365.5|SMAD family member 1 	ENST00000515385.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr3_-_167813132_167813183	0.232773	SOX3_SOX2	ENST00000309027.4|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr8_+_79578282_79578334	0.230192	SOX3_SOX2	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr6_-_86353510_86353595	0.223542	SOX3_SOX2	ENST00000444272.1|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr16_+_53242350_53242398	0.223028	SOX3_SOX2	ENST00000565442.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr12_+_95611569_95611608	0.219769	SOX3_SOX2	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr1_-_26233423_26233482	0.217966	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr2_-_37899323_37899374	0.217487	SOX3_SOX2	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr1_-_26232951_26232959	0.216485	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr12_+_95611516_95611527	0.213338	SOX3_SOX2	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr12_-_104531785_104531812	0.211958	SOX3_SOX2	ENST00000551727.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr2_-_160472052_160472083	0.207604	SOX3_SOX2	ENST00000437839.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chrX_+_71401570_71401644	0.206717	SOX3_SOX2	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr19_+_1452188_1452221	0.204648	SOX3_SOX2	ENST00000587149.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr1_-_154155675_154155709	0.202238	SOX3_SOX2	ENST00000330188.9|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341485.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr1_-_91487013_91487070	0.200842	SOX3_SOX2	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr9_+_91003271_91003386	0.200813	SOX3_SOX2	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chrX_+_150866779_150866779	0.199786	SOX3_SOX2	ENST00000370353.3|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr4_-_83351294_83351417	0.198614	SOX3_SOX2	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr15_+_77224045_77224121	0.19209	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr2_+_219283815_219283853	0.18899	SOX3_SOX2	ENST00000248444.5|VIL1|ENSG00000127831.6|villin 1 	ENST00000454069.1|VIL1|ENSG00000127831.6|villin 1 	ENST00000392114.2|VIL1|ENSG00000127831.6|villin 1
hg19_v2_chr20_+_60698180_60698208	0.181375	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr2_-_239149300_239149321	0.176535	SOX3_SOX2	ENST00000436051.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6
hg19_v2_chr1_+_244998918_244998975	0.175578	SOX3_SOX2	ENST00000366528.3|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr2_+_149402989_149402989	0.163765	SOX3_SOX2	ENST00000397424.2|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr5_-_16936340_16936418	0.1627	SOX3_SOX2	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr10_-_33247124_33247207	0.162698	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr6_+_122720681_122720713	0.161629	SOX3_SOX2	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr1_-_154155595_154155673	0.161357	SOX3_SOX2	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr4_+_154387480_154387536	0.160203	SOX3_SOX2	ENST00000409663.3|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000440693.1|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000409959.3|KIAA0922|ENSG00000121210.11|KIAA0922
hg19_v2_chr14_-_91884115_91884127	0.159973	SOX3_SOX2	ENST00000389857.6|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr9_-_74979420_74979580	0.159276	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr20_+_33292507_33292569	0.159162	SOX3_SOX2	ENST00000414082.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chr4_-_80994210_80994284	0.156426	SOX3_SOX2	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr1_-_26232522_26232644	0.155121	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr12_+_95612006_95612042	0.154391	SOX3_SOX2	ENST00000551311.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000546445.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr17_-_37764128_37764258	0.153695	SOX3_SOX2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr19_-_10341948_10341965	0.153498	SOX3_SOX2	ENST00000590320.1|S1PR2|ENSG00000267534.1|sphingosine-1-phosphate receptor 2 	ENST00000592342.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1 	ENST00000588952.1|DNMT1|ENSG00000130816.10|DNA (cytosine-5-)-methyltransferase 1
hg19_v2_chr5_-_114515734_114515944	0.151625	SOX3_SOX2	ENST00000514154.1|TRIM36|ENSG00000152503.5|tripartite motif containing 36 	ENST00000282369.3|TRIM36|ENSG00000152503.5|tripartite motif containing 36
hg19_v2_chr12_-_122985494_122985543	0.151133	SOX3_SOX2	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr10_+_18948311_18948417	0.151102	SOX3_SOX2	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr1_+_40915725_40915808	0.149954	SOX3_SOX2	ENST00000484445.1|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000411995.2|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000361584.3|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B
hg19_v2_chr3_+_52719936_52720057	0.14977	SOX3_SOX2	ENST00000418458.1|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar) 	ENST00000394799.2|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar)
hg19_v2_chr1_+_25071848_25071944	0.148815	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr1_+_200993071_200993094	0.14851	SOX3_SOX2	ENST00000446333.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1	ENST00000458003.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1
hg19_v2_chr11_-_95523500_95523580	0.147499	SOX3_SOX2	ENST00000540054.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr3_-_167813672_167813763	0.147358	SOX3_SOX2	ENST00000470487.1|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr6_-_41040195_41040263	0.145405	SOX3_SOX2	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chrX_+_70503526_70503611	0.143671	SOX3_SOX2	ENST00000413858.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000450092.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr3_+_141105235_141105307	0.142875	SOX3_SOX2	ENST00000503809.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr19_+_49467232_49467266	0.140945	SOX3_SOX2	ENST00000599784.1|CTD-2639E6.9|ENSG00000267898.1|CTD-2639E6.9	ENST00000594305.1|CTD-2639E6.9|ENSG00000267898.1|CTD-2639E6.9
hg19_v2_chr3_+_49977894_49977934	0.140577	SOX3_SOX2	ENST00000433811.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr1_+_68150744_68150890	0.140395	SOX3_SOX2	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr6_+_80714332_80714551	0.13955	SOX3_SOX2	ENST00000502580.1|TTK|ENSG00000112742.5|TTK protein kinase 	ENST00000511260.1|TTK|ENSG00000112742.5|TTK protein kinase
hg19_v2_chr7_-_105925558_105925638	0.139457	SOX3_SOX2	ENST00000222553.3|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr6_-_41863098_41863120	0.13915	SOX3_SOX2	ENST00000373006.1|USP49|ENSG00000164663.9|ubiquitin specific peptidase 49
hg19_v2_chr6_-_27440460_27440505	0.137092	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr1_-_95391315_95391357	0.136574	SOX3_SOX2	ENST00000545882.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000415017.1|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr4_-_157892055_157892128	0.136201	SOX3_SOX2	ENST00000422544.2|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr4_-_83350580_83350600	0.135102	SOX3_SOX2	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr12_-_122985067_122985268	0.135036	SOX3_SOX2	ENST00000540586.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8 	ENST00000543897.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr10_-_128359074_128359083	0.133531	SOX3_SOX2	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr1_+_150229554_150229660	0.132842	SOX3_SOX2	ENST00000369111.4|CA14|ENSG00000118298.6|carbonic anhydrase XIV
hg19_v2_chr4_+_156775910_156775941	0.131992	SOX3_SOX2	ENST00000506072.1|TDO2|ENSG00000151790.4|tryptophan 2,3-dioxygenase 	ENST00000507590.1|TDO2|ENSG00000151790.4|tryptophan 2,3-dioxygenase
hg19_v2_chr17_+_65373531_65373577	0.131129	SOX3_SOX2	ENST00000580974.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr2_+_46926326_46926452	0.130538	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr4_+_54243862_54243874	0.1303	SOX3_SOX2	ENST00000306932.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr18_+_21718924_21718963	0.129545	SOX3_SOX2	ENST00000399496.3|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr4_-_80993717_80993850	0.129435	SOX3_SOX2	ENST00000307333.7|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr6_-_108278456_108278544	0.129238	SOX3_SOX2	ENST00000429168.1|SEC63|ENSG00000025796.9|SEC63 homolog (S. cerevisiae)
hg19_v2_chr1_-_226496772_226496884	0.12899	SOX3_SOX2	ENST00000359525.2|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans) 	ENST00000460719.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr17_-_79849438_79849493	0.128731	SOX3_SOX2	ENST00000331204.4|ALYREF|ENSG00000183684.6|Aly/REF export factor 	ENST00000505490.2|ALYREF|ENSG00000183684.6|Aly/REF export factor
hg19_v2_chr1_-_247171347_247171395	0.128014	SOX3_SOX2	ENST00000339986.7|ZNF695|ENSG00000197472.10|zinc finger protein 695 	ENST00000487338.2|ZNF695|ENSG00000197472.10|zinc finger protein 695
hg19_v2_chr14_+_58862630_58862662	0.127579	SOX3_SOX2	ENST00000360945.2|TOMM20L|ENSG00000196860.3|translocase of outer mitochondrial membrane 20 homolog (yeast)-like
hg19_v2_chr2_+_61293021_61293093	0.127389	SOX3_SOX2	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr12_-_96793142_96793182	0.126878	SOX3_SOX2	ENST00000552262.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17 	ENST00000551816.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17 	ENST00000552496.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr1_-_93645818_93645918	0.126786	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chrX_+_71401526_71401549	0.125617	SOX3_SOX2	ENST00000218432.5|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000423432.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000373669.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr18_-_74728998_74729051	0.125454	SOX3_SOX2	ENST00000359645.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397875.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397869.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578193.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578873.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397866.4|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000528160.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000527041.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000526111.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397865.5|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000382582.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr8_+_104384616_104384661	0.123883	SOX3_SOX2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr4_+_113152881_113152912	0.123788	SOX3_SOX2	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr22_+_31199037_31199073	0.123563	SOX3_SOX2	ENST00000424224.1|OSBP2|ENSG00000184792.11|oxysterol binding protein 2
hg19_v2_chr18_+_20494078_20494108	0.12356	SOX3_SOX2	ENST00000579124.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000577588.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000582354.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000581819.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8
hg19_v2_chr11_+_110001723_110001732	0.123357	SOX3_SOX2	ENST00000528673.1|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chrX_+_100646190_100646266	0.123195	SOX3_SOX2	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr9_+_103235365_103235419	0.123042	SOX3_SOX2	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr13_-_41593425_41593480	0.121604	SOX3_SOX2	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr3_+_49977440_49977482	0.120752	SOX3_SOX2	ENST00000442092.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000266022.4|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000443081.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr11_-_85430088_85430151	0.11931	SOX3_SOX2	ENST00000533057.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533892.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr11_-_102323740_102323780	0.118997	SOX3_SOX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr10_-_32217717_32217781	0.118471	SOX3_SOX2	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr5_-_65017921_65017968	0.117329	SOX3_SOX2	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr9_-_88896977_88897023	0.116974	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr4_+_95128996_95129056	0.116743	SOX3_SOX2	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr17_-_27277615_27277700	0.116709	SOX3_SOX2	ENST00000583747.1|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584236.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr16_-_31085033_31085078	0.116404	SOX3_SOX2	ENST00000414399.1|ZNF668|ENSG00000167394.8|zinc finger protein 668
hg19_v2_chr4_+_113152978_113152989	0.116318	SOX3_SOX2	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr4_+_24661479_24661534	0.114151	SOX3_SOX2	ENST00000569621.1|RP11-496D24.2|ENSG00000261121.1|RP11-496D24.2
hg19_v2_chr6_-_27440837_27440912	0.114118	SOX3_SOX2	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr18_-_45456693_45456733	0.11359	SOX3_SOX2	ENST00000587421.1|SMAD2|ENSG00000175387.11|SMAD family member 2
hg19_v2_chr14_-_38036271_38036301	0.113301	SOX3_SOX2	ENST00000556024.1|RP11-356O9.2|ENSG00000259087.1|RP11-356O9.2
hg19_v2_chr16_-_75529273_75529293	0.113234	SOX3_SOX2	ENST00000390664.2|CHST6|ENSG00000183196.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
hg19_v2_chr2_-_55276320_55276334	0.113222	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr10_-_14596140_14596228	0.112736	SOX3_SOX2	ENST00000496330.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr4_+_95129061_95129198	0.112544	SOX3_SOX2	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr14_-_71107921_71108085	0.111616	SOX3_SOX2	ENST00000553982.1|CTD-2540L5.5|ENSG00000259115.1|CTD-2540L5.5	ENST00000500016.1|CTD-2540L5.6|ENSG00000245466.1|CTD-2540L5.6
hg19_v2_chr1_+_93645314_93645476	0.111574	SOX3_SOX2	ENST00000343253.7|CCDC18|ENSG00000122483.13|coiled-coil domain containing 18
hg19_v2_chr3_-_79068138_79068214	0.111342	SOX3_SOX2	ENST00000495273.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr4_-_80993854_80993906	0.111291	SOX3_SOX2	ENST00000346652.6|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr11_+_57365150_57365276	0.111125	SOX3_SOX2	ENST00000457869.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000340687.6|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378323.4|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000378324.2|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 	ENST00000403558.1|SERPING1|ENSG00000149131.11|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
hg19_v2_chr4_-_83351005_83351019	0.111117	SOX3_SOX2	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr6_-_41040268_41040353	0.110572	SOX3_SOX2	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chrX_-_135962876_135962896	0.110337	SOX3_SOX2	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr11_-_102323489_102323576	0.110174	SOX3_SOX2	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr8_-_80993010_80993073	0.109665	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr2_+_149402553_149402568	0.109139	SOX3_SOX2	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chrX_+_80457442_80457501	0.108867	SOX3_SOX2	ENST00000373212.5|SH3BGRL|ENSG00000131171.8|SH3 domain binding glutamic acid-rich protein like
hg19_v2_chr1_-_225840747_225840860	0.108432	SOX3_SOX2	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr1_+_145727681_145727725	0.10807	SOX3_SOX2	ENST00000417171.1|PDZK1|ENSG00000174827.9|PDZ domain containing 1 	ENST00000451928.2|PDZK1|ENSG00000174827.9|PDZ domain containing 1
hg19_v2_chr13_+_36920569_36920569	0.1078	SOX3_SOX2	ENST00000379848.2|SPG20OS|ENSG00000120664.6|SPG20 opposite strand
hg19_v2_chr6_-_134861089_134861168	0.107759	SOX3_SOX2	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr15_+_79166065_79166163	0.10775	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr17_-_56065484_56065513	0.107653	SOX3_SOX2	ENST00000581208.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chr17_-_73149921_73149971	0.107358	SOX3_SOX2	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr3_-_52002194_52002250	0.107119	SOX3_SOX2	ENST00000466412.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr11_-_95522907_95522989	0.106702	SOX3_SOX2	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr16_+_3254247_3254247	0.105166	SOX3_SOX2	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chrX_+_100645812_100646008	0.105127	SOX3_SOX2	ENST00000427805.2|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000553110.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000392994.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000409338.1|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough 	ENST00000409170.3|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough
hg19_v2_chr4_-_52883786_52883786	0.104752	SOX3_SOX2	ENST00000343457.3|LRRC66|ENSG00000188993.3|leucine rich repeat containing 66
hg19_v2_chr10_-_14646388_14646417	0.104301	SOX3_SOX2	ENST00000468747.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378467.4|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr5_-_39425222_39425283	0.104252	SOX3_SOX2	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr3_-_71114066_71114114	0.103831	SOX3_SOX2	ENST00000485326.2|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr11_-_8795787_8795848	0.103345	SOX3_SOX2	ENST00000528196.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000533681.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5
hg19_v2_chr10_-_61122220_61122358	0.102386	SOX3_SOX2	ENST00000422313.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000435852.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000442566.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373868.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000277705.6|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373867.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000419214.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chr18_+_21719018_21719061	0.102346	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr14_+_77882741_77882741	0.102327	SOX3_SOX2	ENST00000595520.1|FKSG61|ENSG00000268156.1|FKSG61
hg19_v2_chr14_-_91884150_91884234	0.102215	SOX3_SOX2	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr7_+_69064566_69064597	0.101764	SOX3_SOX2	ENST00000403018.2|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr5_-_176900610_176900742	0.101624	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr6_+_64282447_64282586	0.101527	SOX3_SOX2	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr16_-_46864955_46864980	0.101296	SOX3_SOX2	ENST00000565112.1|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr13_+_76334795_76334809	0.100944	SOX3_SOX2	ENST00000526202.1|LMO7|ENSG00000136153.15|LIM domain 7 	ENST00000465261.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr11_-_6677018_6677085	0.100772	SOX3_SOX2	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr19_+_3224700_3224759	0.100683	SOX3_SOX2	ENST00000292672.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5 	ENST00000541430.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5
hg19_v2_chr7_+_16793160_16793160	0.0996539	SOX3_SOX2	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr11_+_125365110_125365110	0.0990804	SOX3_SOX2	ENST00000527818.1|AP000708.1|ENSG00000255537.1|AP000708.1
hg19_v2_chr12_+_69979446_69979471	0.0989747	SOX3_SOX2	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr3_+_49977523_49977540	0.0988207	SOX3_SOX2	ENST00000422955.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr11_+_114271367_114271401	0.0987966	SOX3_SOX2	ENST00000544582.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7 	ENST00000545678.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr9_-_115249484_115249484	0.0987159	SOX3_SOX2	ENST00000457681.1|C9orf147|ENSG00000230185.4|chromosome 9 open reading frame 147
hg19_v2_chr5_-_114631958_114631990	0.0987013	SOX3_SOX2	ENST00000395557.4|CCDC112|ENSG00000164221.8|coiled-coil domain containing 112
hg19_v2_chr1_+_228337553_228337602	0.0980431	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr3_-_57233966_57234014	0.0978465	SOX3_SOX2	ENST00000473921.1|HESX1|ENSG00000163666.4|HESX homeobox 1 	ENST00000295934.3|HESX1|ENSG00000163666.4|HESX homeobox 1
hg19_v2_chr6_+_56911476_56911524	0.0978412	SOX3_SOX2	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr4_+_26323764_26323831	0.0978259	SOX3_SOX2	ENST00000514730.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region 	ENST00000507574.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr19_-_48673465_48673543	0.0978168	SOX3_SOX2	ENST00000598938.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr11_-_85430204_85430271	0.0976013	SOX3_SOX2	ENST00000389958.3|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000527794.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr7_+_7222233_7222327	0.0975686	SOX3_SOX2	ENST00000436587.2|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr3_+_164924716_164924750	0.0970303	SOX3_SOX2	ENST00000470138.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2	ENST00000498616.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2
hg19_v2_chr5_+_179135246_179135327	0.0969661	SOX3_SOX2	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr21_+_30671690_30671762	0.0964749	SOX3_SOX2	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr14_-_57960456_57960478	0.0962279	SOX3_SOX2	ENST00000534126.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000422976.2|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr2_+_170590321_170590408	0.0959125	SOX3_SOX2	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr15_+_57210961_57211030	0.0958464	SOX3_SOX2	ENST00000557843.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr15_-_50647274_50647336	0.0956287	SOX3_SOX2	ENST00000543881.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr12_-_45270151_45270162	0.095357	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr19_-_37019136_37019178	0.095314	SOX3_SOX2	ENST00000592282.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr8_+_63161491_63161522	0.0950796	SOX3_SOX2	ENST00000523211.1|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3 	ENST00000524201.1|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr1_+_212797789_212797818	0.0950156	SOX3_SOX2	ENST00000294829.3|FAM71A|ENSG00000162771.6|family with sequence similarity 71, member A
hg19_v2_chrX_+_135579238_135579416	0.09497	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr19_+_55795493_55795534	0.0948167	SOX3_SOX2	ENST00000309383.1|BRSK1|ENSG00000160469.12|BR serine/threonine kinase 1
hg19_v2_chr2_-_232328867_232328921	0.0948041	SOX3_SOX2	ENST00000453992.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000417652.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000454824.1|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chrX_-_77395186_77395203	0.0944459	SOX3_SOX2	ENST00000341864.5|TAF9B|ENSG00000187325.4|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
hg19_v2_chr16_+_53241854_53241953	0.0942492	SOX3_SOX2	ENST00000565803.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr1_+_144339738_144339738	0.0938677	SOX3_SOX2	ENST00000538264.1|AL592284.1|ENSG00000231360.2|Protein LOC642441
hg19_v2_chr12_-_104531945_104531996	0.0936337	SOX3_SOX2	ENST00000551446.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr10_+_180643_180764	0.0931787	SOX3_SOX2	ENST00000509513.2|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397959.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr7_+_77167343_77167369	0.0929149	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr19_-_18385221_18385245	0.0928377	SOX3_SOX2	ENST00000595654.2|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000593659.1|KIAA1683|ENSG00000130518.12|KIAA1683 	ENST00000599528.1|KIAA1683|ENSG00000130518.12|KIAA1683
hg19_v2_chr11_+_34643600_34643750	0.0926372	SOX3_SOX2	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr15_+_63335899_63336001	0.0922664	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr17_-_49198216_49198236	0.0920763	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr4_+_75023816_75023890	0.091797	SOX3_SOX2	ENST00000395759.2|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000331145.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000359107.5|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000325278.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
hg19_v2_chr10_+_70480963_70481010	0.0916974	SOX3_SOX2	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr3_+_49977490_49977522	0.0916007	SOX3_SOX2	ENST00000539992.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr12_-_64784306_64784378	0.0915885	SOX3_SOX2	ENST00000543259.1|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr3_-_149688971_149689010	0.0913045	SOX3_SOX2	ENST00000498307.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000489155.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr2_+_69240511_69240532	0.0907838	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr10_+_6244829_6244904	0.0905977	SOX3_SOX2	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr17_-_46690839_46690884	0.0905528	SOX3_SOX2	ENST00000498634.2|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr2_+_46926048_46926095	0.0903095	SOX3_SOX2	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr13_+_76334567_76334582	0.0901865	SOX3_SOX2	ENST00000321797.8|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr2_-_73964447_73964527	0.0901344	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chr4_-_184580304_184580351	0.0897521	SOX3_SOX2	ENST00000510968.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000512740.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000327570.9|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr5_-_118324200_118324254	0.0895142	SOX3_SOX2	ENST00000515439.3|DTWD2|ENSG00000169570.5|DTW domain containing 2 	ENST00000510708.1|DTWD2|ENSG00000169570.5|DTW domain containing 2
hg19_v2_chr19_+_20011775_20011870	0.0892158	SOX3_SOX2	ENST00000592245.1|AC007204.2|ENSG00000267268.1|AC007204.2	ENST00000592160.1|ZNF93|ENSG00000184635.9|zinc finger protein 93 	ENST00000343769.5|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chr7_-_139756791_139756791	0.0891628	SOX3_SOX2	ENST00000489809.1|PARP12|ENSG00000059378.8|poly (ADP-ribose) polymerase family, member 12
hg19_v2_chr1_+_151682909_151682909	0.089105	SOX3_SOX2	ENST00000326413.3|RIIAD1|ENSG00000178796.8|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 	ENST00000442233.2|AL589765.1|ENSG00000240510.2|Uncharacterized protein; cDNA FLJ36032 fis, clone TESTI2017069
hg19_v2_chr12_+_69979113_69979155	0.0888963	SOX3_SOX2	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr4_-_184241927_184241927	0.0888836	SOX3_SOX2	ENST00000323319.5|CLDN22|ENSG00000177300.5|claudin 22
hg19_v2_chr9_-_127905736_127905815	0.0886847	SOX3_SOX2	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr14_+_101293687_101293748	0.0881482	SOX3_SOX2	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr5_+_66300464_66300505	0.088108	SOX3_SOX2	ENST00000436277.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr16_+_58497274_58497330	0.0880767	SOX3_SOX2	ENST00000564207.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr17_+_75447326_75447457	0.0876255	SOX3_SOX2	ENST00000591088.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr3_-_197024965_197025038	0.0874312	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr10_-_33246722_33246830	0.0873706	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr18_+_33161698_33161709	0.087314	SOX3_SOX2	ENST00000591924.1|GALNT1|ENSG00000141429.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
hg19_v2_chr8_+_63161550_63161633	0.0872734	SOX3_SOX2	ENST00000328472.5|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr5_-_39424961_39424980	0.0871673	SOX3_SOX2	ENST00000503513.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr5_-_39425068_39425098	0.0871131	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr8_+_92114873_92114890	0.0870287	SOX3_SOX2	ENST00000343709.3|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69 	ENST00000448384.2|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69
hg19_v2_chr8_+_66955648_66955712	0.0866089	SOX3_SOX2	ENST00000522619.1|DNAJC5B|ENSG00000147570.5|DnaJ (Hsp40) homolog, subfamily C, member 5 beta
hg19_v2_chr1_+_89990378_89990429	0.0865649	SOX3_SOX2	ENST00000449440.1|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr20_-_49547731_49547753	0.0864354	SOX3_SOX2	ENST00000396029.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr15_-_52263937_52264003	0.0862109	SOX3_SOX2	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr6_+_32937083_32937101	0.0859021	SOX3_SOX2	ENST00000456339.1|BRD2|ENSG00000204256.8|bromodomain containing 2
hg19_v2_chr17_-_46716647_46716665	0.0855591	SOX3_SOX2	ENST00000608940.1|RP11-357H14.17|ENSG00000272763.1|RP11-357H14.17
hg19_v2_chr1_-_235491462_235491534	0.0854813	SOX3_SOX2	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr3_-_138312971_138313132	0.0854813	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr1_-_182360498_182360541	0.0848689	SOX3_SOX2	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr15_+_77223960_77223994	0.0848608	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr5_+_110073853_110073866	0.084694	SOX3_SOX2	ENST00000513807.1|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46 	ENST00000509442.2|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46
hg19_v2_chr12_+_133614062_133614117	0.0846649	SOX3_SOX2	ENST00000540031.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000536123.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr5_-_180018540_180018549	0.0844673	SOX3_SOX2	ENST00000292641.3|SCGB3A1|ENSG00000161055.3|secretoglobin, family 3A, member 1
hg19_v2_chr1_+_236305826_236305877	0.0840188	SOX3_SOX2	ENST00000366592.3|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B 	ENST00000366591.4|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B
hg19_v2_chr6_+_28092338_28092412	0.0840094	SOX3_SOX2	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr1_+_178482262_178482279	0.0833719	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr1_+_47799542_47799624	0.0833367	SOX3_SOX2	ENST00000471289.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 	ENST00000450808.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
hg19_v2_chr8_-_42358742_42358787	0.0832149	SOX3_SOX2	ENST00000517366.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr6_-_11232891_11232915	0.0829448	SOX3_SOX2	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr9_-_123476612_123476698	0.0828567	SOX3_SOX2	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr8_+_98656693_98656774	0.0824158	SOX3_SOX2	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr7_-_151511911_151511962	0.0822057	SOX3_SOX2	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr12_-_46384334_46384367	0.0821485	SOX3_SOX2	ENST00000369367.3|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000266589.6|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395453.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395454.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11
hg19_v2_chr11_-_85430163_85430200	0.0821472	SOX3_SOX2	ENST00000529581.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533577.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr17_+_57233087_57233146	0.0819017	SOX3_SOX2	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr1_+_235491714_235491895	0.0818554	SOX3_SOX2	ENST00000471812.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000358966.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000282841.5|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000391855.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr13_-_24007815_24007872	0.0818405	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr5_-_39425290_39425336	0.0817451	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr13_+_111767650_111767874	0.0817079	SOX3_SOX2	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr7_-_148580563_148580601	0.0816904	SOX3_SOX2	ENST00000476773.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr9_+_67968793_67968793	0.0816813	SOX3_SOX2	ENST00000417488.1|RP11-195B21.3|ENSG00000155282.7|Protein LOC644249
hg19_v2_chr14_-_31495569_31495636	0.0816363	SOX3_SOX2	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr2_-_218843623_218843657	0.0815257	SOX3_SOX2	ENST00000413280.1|TNS1|ENSG00000079308.12|tensin 1
hg19_v2_chr7_+_30068260_30068301	0.0814582	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr17_-_15469590_15469590	0.0813519	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr22_-_32022280_32022297	0.0813455	SOX3_SOX2	ENST00000442379.1|PISD|ENSG00000241878.5|phosphatidylserine decarboxylase
hg19_v2_chr17_+_15603447_15603447	0.0804984	SOX3_SOX2	ENST00000395893.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr14_-_50999307_50999367	0.0804347	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chrY_+_15016013_15016029	0.0803947	SOX3_SOX2	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr11_-_65640071_65640125	0.0801017	SOX3_SOX2	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr14_+_52456327_52456344	0.0796932	SOX3_SOX2	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr16_-_22385901_22385947	0.0795808	SOX3_SOX2	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr15_+_41136369_41136420	0.0795211	SOX3_SOX2	ENST00000563656.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr1_-_154150651_154150691	0.0792877	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr11_-_14358620_14358712	0.0788396	SOX3_SOX2	ENST00000531421.1|RRAS2|ENSG00000133818.8|related RAS viral (r-ras) oncogene homolog 2
hg19_v2_chr17_+_70036164_70036164	0.0787434	SOX3_SOX2	ENST00000602013.1|AC007461.1|ENSG00000267893.1|Uncharacterized protein
hg19_v2_chr3_-_93747425_93747454	0.0787157	SOX3_SOX2	ENST00000315099.2|STX19|ENSG00000178750.2|syntaxin 19
hg19_v2_chr3_-_19988462_19988501	0.0786079	SOX3_SOX2	ENST00000344838.4|EFHB|ENSG00000163576.13|EF-hand domain family, member B
hg19_v2_chr17_+_76037081_76037128	0.0782911	SOX3_SOX2	ENST00000588549.1|TNRC6C|ENSG00000078687.12|trinucleotide repeat containing 6C
hg19_v2_chr11_-_125550726_125550747	0.0781726	SOX3_SOX2	ENST00000315608.3|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1 	ENST00000530048.1|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1
hg19_v2_chr15_+_52043758_52043809	0.0780669	SOX3_SOX2	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr19_+_55888186_55888204	0.0780512	SOX3_SOX2	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr1_-_243418344_243418356	0.0776499	SOX3_SOX2	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr6_+_21666633_21666681	0.0774711	SOX3_SOX2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr10_-_32667660_32667735	0.0772608	SOX3_SOX2	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr10_-_118429461_118429484	0.0768343	SOX3_SOX2	ENST00000588184.1|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82 	ENST00000369210.3|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82
hg19_v2_chrX_+_119384607_119384720	0.0765562	SOX3_SOX2	ENST00000326624.2|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33 	ENST00000557385.1|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33
hg19_v2_chr3_+_38323785_38323789	0.0764382	SOX3_SOX2	ENST00000466887.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14 	ENST00000448498.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14
hg19_v2_chr10_-_104953009_104953061	0.0761892	SOX3_SOX2	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr21_-_16437126_16437205	0.076135	SOX3_SOX2	ENST00000318948.4|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr17_+_27573875_27573881	0.075924	SOX3_SOX2	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chr15_-_40331356_40331389	0.0757273	SOX3_SOX2	ENST00000560773.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein) 	ENST00000267884.6|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr12_-_45270077_45270143	0.0753794	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr10_-_97321112_97321163	0.0752824	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr11_+_35198118_35198209	0.0752129	SOX3_SOX2	ENST00000525211.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526000.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000279452.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000527889.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr4_-_184580353_184580378	0.0751336	SOX3_SOX2	ENST00000326397.5|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr20_-_50418947_50418964	0.0750706	SOX3_SOX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr12_-_8803128_8803164	0.0750116	SOX3_SOX2	ENST00000543467.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr20_-_44176060_44176067	0.0749949	SOX3_SOX2	ENST00000354280.4|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor 	ENST00000504988.1|EPPIN-WFDC6|ENSG00000249139.1|EPPIN-WFDC6 readthrough
hg19_v2_chr7_-_35840198_35840245	0.074927	SOX3_SOX2	ENST00000412856.1|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000437235.3|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000424194.1|AC007551.3|ENSG00000228878.3|AC007551.3
hg19_v2_chr4_+_71588372_71588404	0.0747586	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chrX_+_135579670_135579715	0.0747407	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr14_+_23305783_23305835	0.0747203	SOX3_SOX2	ENST00000547279.1|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr4_+_76649797_76650004	0.0747203	SOX3_SOX2	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr17_-_56605341_56605363	0.0745885	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr12_+_42624050_42624050	0.0744572	SOX3_SOX2	ENST00000601185.1|AC020629.1|ENSG00000269367.1|Uncharacterized protein
hg19_v2_chr7_+_18535321_18535343	0.0743454	SOX3_SOX2	ENST00000413380.1|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000430454.1|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr12_+_69979210_69979252	0.0742897	SOX3_SOX2	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr20_+_55099542_55099542	0.0740912	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr12_+_49297899_49297955	0.0739449	SOX3_SOX2	ENST00000552942.1|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65 	ENST00000320516.4|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr18_-_9614863_9614898	0.0739337	SOX3_SOX2	ENST00000584074.1|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr4_+_128702969_128702984	0.0738172	SOX3_SOX2	ENST00000508776.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000439123.2|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr1_+_42928945_42929025	0.0737174	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chrX_-_43832711_43832750	0.0733034	SOX3_SOX2	ENST00000378062.5|NDP|ENSG00000124479.8|Norrie disease (pseudoglioma)
hg19_v2_chr3_-_195310802_195310818	0.0730772	SOX3_SOX2	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr1_+_185014496_185014518	0.072866	SOX3_SOX2	ENST00000367510.3|RNF2|ENSG00000121481.6|ring finger protein 2
hg19_v2_chr4_+_55524085_55524110	0.0727293	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr2_-_17981462_17981584	0.0727235	SOX3_SOX2	ENST00000402989.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000428868.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr19_+_42254885_42254970	0.0724335	SOX3_SOX2	ENST00000595740.1|CEACAM6|ENSG00000086548.8|carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
hg19_v2_chr14_+_24641820_24641937	0.0723848	SOX3_SOX2	ENST00000560501.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr5_-_102455801_102455855	0.0720367	SOX3_SOX2	ENST00000508629.1|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1 	ENST00000399004.2|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1
hg19_v2_chr19_-_3029011_3029174	0.0719965	SOX3_SOX2	ENST00000590536.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000587137.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000455444.2|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000262953.6|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)
hg19_v2_chr14_-_82089405_82089428	0.0718251	SOX3_SOX2	ENST00000554211.1|RP11-799P8.1|ENSG00000258977.1|RP11-799P8.1
hg19_v2_chr5_+_150816595_150816647	0.0717657	SOX3_SOX2	ENST00000520111.1|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1 	ENST00000520701.1|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1 	ENST00000429484.2|SLC36A1|ENSG00000123643.8|solute carrier family 36 (proton/amino acid symporter), member 1
hg19_v2_chr15_-_98646940_98646945	0.0717264	SOX3_SOX2	ENST00000560195.1|CTD-2544M6.2|ENSG00000259611.1|CTD-2544M6.2
hg19_v2_chr10_-_30024716_30024739	0.0716466	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr8_-_17579726_17579759	0.0714937	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr15_-_57210769_57210803	0.0714759	SOX3_SOX2	ENST00000559000.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr2_+_172949468_172949522	0.0714755	SOX3_SOX2	ENST00000361609.4|DLX1|ENSG00000144355.10|distal-less homeobox 1 	ENST00000469444.2|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr20_-_17511962_17512033	0.0714523	SOX3_SOX2	ENST00000377873.3|BFSP1|ENSG00000125864.7|beaded filament structural protein 1, filensin
hg19_v2_chr5_+_65018017_65018088	0.0713322	SOX3_SOX2	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr7_+_138145145_138145209	0.0710716	SOX3_SOX2	ENST00000415680.2|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr17_-_49124230_49124248	0.0709976	SOX3_SOX2	ENST00000510283.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000510855.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr4_-_24586140_24586188	0.0709242	SOX3_SOX2	ENST00000336812.4|DHX15|ENSG00000109606.8|DEAH (Asp-Glu-Ala-His) box helicase 15
hg19_v2_chr19_-_36247910_36247937	0.0707802	SOX3_SOX2	ENST00000587965.1|HSPB6|ENSG00000004776.7|heat shock protein, alpha-crystallin-related, B6 	ENST00000004982.3|HSPB6|ENSG00000004776.7|heat shock protein, alpha-crystallin-related, B6
hg19_v2_chr17_+_59489112_59489112	0.0705143	SOX3_SOX2	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chr2_-_175869936_175869954	0.0704931	SOX3_SOX2	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr3_-_57583052_57583079	0.0703697	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr7_+_87563557_87563735	0.0699792	SOX3_SOX2	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr3_-_129513259_129513392	0.0698189	SOX3_SOX2	ENST00000329333.5|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr13_+_49684445_49684517	0.0697985	SOX3_SOX2	ENST00000398316.3|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr19_+_37960240_37960299	0.0697391	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr7_+_77166592_77166653	0.0696609	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr15_+_41136216_41136252	0.0695038	SOX3_SOX2	ENST00000562057.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1 	ENST00000344051.4|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr17_-_56065540_56065627	0.0693518	SOX3_SOX2	ENST00000583932.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chr17_-_982198_982386	0.0693347	SOX3_SOX2	ENST00000571945.1|ABR|ENSG00000159842.10|active BCR-related 	ENST00000536794.2|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr14_-_80678512_80678529	0.0693278	SOX3_SOX2	ENST00000553968.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr11_+_35198243_35198260	0.0691903	SOX3_SOX2	ENST00000528455.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr1_-_53018654_53018777	0.0689127	SOX3_SOX2	ENST00000257177.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000355809.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000528642.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000470626.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000371544.3|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr2_+_70121075_70121102	0.0688356	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chr5_+_49962772_49962815	0.0686315	SOX3_SOX2	ENST00000281631.5|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000513738.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503665.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000514067.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503046.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr8_-_17270809_17270848	0.0685889	SOX3_SOX2	ENST00000180173.5|MTMR7|ENSG00000003987.9|myotubularin related protein 7 	ENST00000521857.1|MTMR7|ENSG00000003987.9|myotubularin related protein 7
hg19_v2_chr14_+_23791159_23791231	0.0685303	SOX3_SOX2	ENST00000557702.1|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr13_-_25496926_25497034	0.0682959	SOX3_SOX2	ENST00000545981.1|CENPJ|ENSG00000151849.10|centromere protein J 	ENST00000381884.4|CENPJ|ENSG00000151849.10|centromere protein J
hg19_v2_chr1_+_1266654_1266694	0.0681835	SOX3_SOX2	ENST00000339381.5|TAS1R3|ENSG00000169962.4|taste receptor, type 1, member 3
hg19_v2_chr4_+_95128748_95128794	0.0680624	SOX3_SOX2	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr16_+_33629600_33629681	0.068028	SOX3_SOX2	ENST00000562905.2|IGHV3OR16-13|ENSG00000271178.1|immunoglobulin heavy variable 3/OR16-13 (non-functional)
hg19_v2_chr17_+_33914424_33914455	0.0679859	SOX3_SOX2	ENST00000590432.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr7_+_104581389_104581653	0.0679616	SOX3_SOX2	ENST00000415513.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2	ENST00000417026.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2
hg19_v2_chr18_+_13726645_13726768	0.0678775	SOX3_SOX2	ENST00000543302.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000383314.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000535051.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000592764.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000591746.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase
hg19_v2_chr4_-_40859132_40859209	0.0677028	SOX3_SOX2	ENST00000543538.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000502841.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000504305.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000513516.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000510670.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2
hg19_v2_chr1_-_115259337_115259515	0.067636	SOX3_SOX2	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr19_+_21203426_21203475	0.06754	SOX3_SOX2	ENST00000261560.5|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000599548.1|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000594110.1|ZNF430|ENSG00000118620.8|zinc finger protein 430
hg19_v2_chr3_+_44596679_44596726	0.0675368	SOX3_SOX2	ENST00000426540.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000431636.1|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000341840.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7 	ENST00000273320.3|ZKSCAN7|ENSG00000196345.8|zinc finger with KRAB and SCAN domains 7
hg19_v2_chr3_-_4927447_4927479	0.0674258	SOX3_SOX2	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr8_-_27469383_27469483	0.0673884	SOX3_SOX2	ENST00000519742.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr2_+_54683419_54683442	0.0673175	SOX3_SOX2	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr4_+_184365744_184365797	0.0673011	SOX3_SOX2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr4_+_71587669_71587752	0.0672678	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr3_+_155588375_155588512	0.0671415	SOX3_SOX2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr8_-_97247759_97247862	0.0671389	SOX3_SOX2	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr4_-_184243561_184243579	0.0671287	SOX3_SOX2	ENST00000514470.1|CLDN24|ENSG00000185758.7|claudin 24 	ENST00000541814.1|CLDN24|ENSG00000185758.7|claudin 24
hg19_v2_chr7_-_148581251_148581347	0.0668969	SOX3_SOX2	ENST00000478654.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000460911.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000350995.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr3_-_195270162_195270209	0.0665881	SOX3_SOX2	ENST00000438848.1|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2 	ENST00000328432.3|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2
hg19_v2_chr7_-_148581360_148581425	0.0663922	SOX3_SOX2	ENST00000320356.2|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000541220.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000483967.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila) 	ENST00000536783.1|EZH2|ENSG00000106462.6|enhancer of zeste homolog 2 (Drosophila)
hg19_v2_chr20_+_30598231_30598260	0.0663596	SOX3_SOX2	ENST00000300415.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like 	ENST00000262659.8|CCM2L|ENSG00000101331.11|cerebral cavernous malformation 2-like
hg19_v2_chr7_+_116312411_116312502	0.0663504	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr5_+_112074029_112074040	0.0661552	SOX3_SOX2	ENST00000512211.2|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr11_+_34654011_34654118	0.0660674	SOX3_SOX2	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr10_+_91174486_91174528	0.0660484	SOX3_SOX2	ENST00000416601.1|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr19_-_38743878_38743928	0.0659353	SOX3_SOX2	ENST00000587515.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr14_+_96968802_96968895	0.0659147	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr11_-_76155618_76155676	0.0657876	SOX3_SOX2	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr5_-_68339648_68339711	0.0655031	SOX3_SOX2	ENST00000479830.2|CTC-498J12.1|ENSG00000250237.1|CTC-498J12.1
hg19_v2_chr7_+_73868120_73868216	0.0653862	SOX3_SOX2	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr8_-_95487331_95487359	0.0653821	SOX3_SOX2	ENST00000336148.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr12_-_105478339_105478361	0.0653744	SOX3_SOX2	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr1_+_235490659_235490670	0.065296	SOX3_SOX2	ENST00000488594.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chrX_+_16737718_16737778	0.0652657	SOX3_SOX2	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr17_-_49198095_49198119	0.0651739	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr17_+_57297807_57297923	0.0650665	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr1_+_100818156_100818210	0.0649408	SOX3_SOX2	ENST00000336454.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr10_-_14614311_14614382	0.0648134	SOX3_SOX2	ENST00000479731.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000468492.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr7_-_6388389_6388531	0.0647737	SOX3_SOX2	ENST00000578372.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr13_-_31736132_31736176	0.0647461	SOX3_SOX2	ENST00000429785.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr14_-_35344093_35344138	0.0647134	SOX3_SOX2	ENST00000382422.2|BAZ1A|ENSG00000198604.6|bromodomain adjacent to zinc finger domain, 1A
hg19_v2_chr3_+_183353356_183353450	0.0646654	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr14_-_45603657_45603732	0.06466	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chr5_-_168006324_168006400	0.0646458	SOX3_SOX2	ENST00000522176.1|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr3_+_149531607_149531651	0.064592	SOX3_SOX2	ENST00000468648.1|RNF13|ENSG00000082996.15|ring finger protein 13 	ENST00000459632.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr6_-_46620522_46620560	0.0645035	SOX3_SOX2	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr16_-_52580920_52580992	0.0644924	SOX3_SOX2	ENST00000219746.9|TOX3|ENSG00000103460.12|TOX high mobility group box family member 3
hg19_v2_chr11_-_64013288_64013343	0.0641954	SOX3_SOX2	ENST00000542235.1|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr5_+_34656529_34656549	0.0640683	SOX3_SOX2	ENST00000513974.1|RAI14|ENSG00000039560.9|retinoic acid induced 14 	ENST00000512629.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr10_+_22610876_22611035	0.0640672	SOX3_SOX2	ENST00000442508.1|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr12_-_46663734_46663851	0.064047	SOX3_SOX2	ENST00000550173.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr12_-_122907091_122907186	0.0639273	SOX3_SOX2	ENST00000358808.2|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000361654.4|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000539080.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000537178.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr2_-_1748214_1748295	0.0638681	SOX3_SOX2	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr3_+_52720187_52720196	0.0638132	SOX3_SOX2	ENST00000474423.1|GNL3|ENSG00000163938.12|guanine nucleotide binding protein-like 3 (nucleolar)
hg19_v2_chr10_+_127371798_127371862	0.0636345	SOX3_SOX2	ENST00000596068.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000607914.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000415305.2|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000449693.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3
hg19_v2_chr7_+_134464414_134464429	0.0635151	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr15_+_93426514_93426562	0.0633545	SOX3_SOX2	ENST00000556722.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr2_-_39348137_39348212	0.063284	SOX3_SOX2	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr12_+_15475462_15475487	0.0632817	SOX3_SOX2	ENST00000543886.1|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000348962.2|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O
hg19_v2_chr10_+_71444655_71444655	0.0631721	SOX3_SOX2	ENST00000434931.2|RP11-242G20.1|ENSG00000235645.2|Uncharacterized protein
hg19_v2_chr1_+_244998602_244998646	0.0631069	SOX3_SOX2	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr14_-_105071083_105071155	0.0628879	SOX3_SOX2	ENST00000415614.2|TMEM179|ENSG00000258986.2|transmembrane protein 179
hg19_v2_chr15_-_40331115_40331251	0.0628539	SOX3_SOX2	ENST00000558720.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr8_+_62200509_62200590	0.0626695	SOX3_SOX2	ENST00000519846.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000518592.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000325897.4|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr3_+_100211412_100211504	0.0625571	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr4_+_89444961_89445032	0.0623473	SOX3_SOX2	ENST00000513325.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3
hg19_v2_chr1_-_46598371_46598708	0.0622863	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr11_+_111808119_111808151	0.062175	SOX3_SOX2	ENST00000531396.1|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr4_+_1873155_1873188	0.0621407	SOX3_SOX2	ENST00000507820.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1 	ENST00000514045.1|WHSC1|ENSG00000109685.13|Wolf-Hirschhorn syndrome candidate 1
hg19_v2_chr18_+_56531584_56531646	0.0619351	SOX3_SOX2	ENST00000590287.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr8_-_60031762_60031803	0.0618217	SOX3_SOX2	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr15_-_89764929_89764982	0.0618119	SOX3_SOX2	ENST00000268125.5|RLBP1|ENSG00000140522.7|retinaldehyde binding protein 1
hg19_v2_chr16_+_88636875_88636886	0.061682	SOX3_SOX2	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr11_-_46142615_46142729	0.0615923	SOX3_SOX2	ENST00000529734.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000323180.6|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr14_+_52456193_52456320	0.06152	SOX3_SOX2	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr14_+_64971292_64971415	0.0614104	SOX3_SOX2	ENST00000358738.3|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1 	ENST00000394712.2|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr19_-_37958318_37958365	0.0613704	SOX3_SOX2	ENST00000316950.6|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000591710.1|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr17_-_38804061_38804112	0.0609527	SOX3_SOX2	ENST00000474246.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000377808.4|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000578044.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580419.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000400122.3|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580654.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000577721.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000478349.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000431889.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
hg19_v2_chr6_-_160210604_160210641	0.0608166	SOX3_SOX2	ENST00000420894.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000539756.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000544255.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr4_+_54243917_54244006	0.0607291	SOX3_SOX2	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr9_-_4859260_4859260	0.060724	SOX3_SOX2	ENST00000599351.1|AL158147.2|ENSG00000269305.1|HCG2011465; Uncharacterized protein
hg19_v2_chr1_+_100818009_100818072	0.0607144	SOX3_SOX2	ENST00000370125.2|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000361544.6|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000370124.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr17_+_79761997_79762034	0.0606427	SOX3_SOX2	ENST00000400723.3|GCGR|ENSG00000215644.5|glucagon receptor 	ENST00000570996.1|GCGR|ENSG00000215644.5|glucagon receptor
hg19_v2_chr11_-_117747434_117747453	0.0604133	SOX3_SOX2	ENST00000529335.2|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000530956.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000260282.4|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6
hg19_v2_chr2_+_153191706_153191751	0.0602004	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr3_-_138313161_138313198	0.0601938	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr1_-_6546001_6546019	0.0600511	SOX3_SOX2	ENST00000400913.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr8_+_32579271_32579316	0.0599686	SOX3_SOX2	ENST00000518084.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr5_+_65222438_65222471	0.0599624	SOX3_SOX2	ENST00000380938.2|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr12_-_57882577_57882614	0.0598609	SOX3_SOX2	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr3_+_20081515_20081570	0.0596853	SOX3_SOX2	ENST00000263754.4|KAT2B|ENSG00000114166.7|K(lysine) acetyltransferase 2B
hg19_v2_chr19_-_49864746_49864780	0.0592855	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr6_-_90062543_90062567	0.0591937	SOX3_SOX2	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr22_-_36357671_36357714	0.0591903	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr5_+_34656569_34656588	0.0591657	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr11_+_10772534_10772573	0.0590996	SOX3_SOX2	ENST00000361367.2|CTR9|ENSG00000198730.3|CTR9, Paf1/RNA polymerase II complex component
hg19_v2_chr6_+_13925098_13925163	0.0589984	SOX3_SOX2	ENST00000488300.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000544682.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000420478.2|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr19_-_8213753_8213753	0.0589615	SOX3_SOX2	ENST00000601739.1|FBN3|ENSG00000142449.8|fibrillin 3
hg19_v2_chr7_+_70597109_70597155	0.0589071	SOX3_SOX2	ENST00000333538.5|WBSCR17|ENSG00000185274.7|Williams-Beuren syndrome chromosome region 17
hg19_v2_chr11_-_125550764_125550773	0.0588376	SOX3_SOX2	ENST00000527795.1|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1
hg19_v2_chrX_+_107068959_107068985	0.0588177	SOX3_SOX2	ENST00000451923.1|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr1_+_227751231_227751273	0.0587805	SOX3_SOX2	ENST00000343776.5|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000608949.1|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000397097.3|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr17_+_1674982_1675041	0.0587636	SOX3_SOX2	ENST00000572048.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000573763.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr5_+_59726565_59726565	0.0586544	SOX3_SOX2	ENST00000412930.2|FKSG52|ENSG00000224838.2|FKSG52
hg19_v2_chr8_-_123793048_123793069	0.0586518	SOX3_SOX2	ENST00000607710.1|RP11-44N11.2|ENSG00000272384.1|RP11-44N11.2
hg19_v2_chr8_-_101962777_101962805	0.0583879	SOX3_SOX2	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr3_-_197025447_197025533	0.0582431	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr1_+_154193643_154193804	0.058193	SOX3_SOX2	ENST00000456325.1|UBAP2L|ENSG00000143569.14|ubiquitin associated protein 2-like
hg19_v2_chr9_+_103189536_103189601	0.0581755	SOX3_SOX2	ENST00000374885.1|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr15_+_63796779_63796863	0.0580065	SOX3_SOX2	ENST00000561442.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000560070.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000540797.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000380324.3|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000268049.7|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000536001.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000539772.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3
hg19_v2_chr10_-_97321165_97321176	0.0578779	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr2_-_190649023_190649081	0.05777	SOX3_SOX2	ENST00000409519.1|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000458355.1|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr12_+_57522692_57522751	0.0575315	SOX3_SOX2	ENST00000554174.1|LRP1|ENSG00000123384.9|low density lipoprotein receptor-related protein 1
hg19_v2_chr2_+_179316163_179316163	0.0574871	SOX3_SOX2	ENST00000409117.3|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr22_+_46972975_46973087	0.0574447	SOX3_SOX2	ENST00000431155.1|GRAMD4|ENSG00000075240.12|GRAM domain containing 4
hg19_v2_chr1_+_93913713_93913839	0.0574175	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr5_-_90610200_90610226	0.0573391	SOX3_SOX2	ENST00000511918.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000513626.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000607854.1|RP11-213H15.4|ENSG00000271762.1|RP11-213H15.4
hg19_v2_chr11_+_17316870_17316897	0.057319	SOX3_SOX2	ENST00000458064.2|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr4_+_124317940_124317987	0.0572452	SOX3_SOX2	ENST00000505319.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila) 	ENST00000339241.1|SPRY1|ENSG00000164056.6|sprouty homolog 1, antagonist of FGF signaling (Drosophila)
hg19_v2_chr12_+_104337515_104337574	0.0572449	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr4_-_5890145_5890234	0.0572248	SOX3_SOX2	ENST00000397890.2|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr5_+_137514687_137514774	0.0570821	SOX3_SOX2	ENST00000394894.3|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr9_+_103189458_103189504	0.05694	SOX3_SOX2	ENST00000398977.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chrX_+_9880412_9880550	0.0568474	SOX3_SOX2	ENST00000418909.2|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr17_+_8339164_8339186	0.0568297	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr3_-_71353892_71353928	0.0567719	SOX3_SOX2	ENST00000484350.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr16_-_20566616_20566616	0.056689	SOX3_SOX2	ENST00000569163.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr5_+_34656450_34656523	0.0566625	SOX3_SOX2	ENST00000514527.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr14_+_97263641_97263764	0.0565296	SOX3_SOX2	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr12_-_120805872_120805897	0.0563057	SOX3_SOX2	ENST00000546985.1|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr19_-_37958086_37958150	0.0562232	SOX3_SOX2	ENST00000592490.1|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000392149.2|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr8_-_95487272_95487330	0.056205	SOX3_SOX2	ENST00000297592.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr4_-_113437328_113437337	0.0560728	SOX3_SOX2	ENST00000313341.3|NEUROG2|ENSG00000178403.3|neurogenin 2
hg19_v2_chr16_+_58497587_58497668	0.0559419	SOX3_SOX2	ENST00000569404.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000569539.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000564126.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000565304.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000567667.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr18_+_11751466_11751475	0.0558985	SOX3_SOX2	ENST00000535121.1|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr3_-_101232019_101232085	0.055733	SOX3_SOX2	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr4_+_106629929_106629982	0.0554906	SOX3_SOX2	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr3_+_36421971_36422065	0.055473	SOX3_SOX2	ENST00000457375.2|STAC|ENSG00000144681.6|SH3 and cysteine rich domain 	ENST00000434649.1|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chrX_+_86772707_86772752	0.055458	SOX3_SOX2	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr1_+_35734616_35734642	0.0554568	SOX3_SOX2	ENST00000441447.1|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr1_-_114355083_114355123	0.0553738	SOX3_SOX2	ENST00000261441.5|RSBN1|ENSG00000081019.9|round spermatid basic protein 1
hg19_v2_chr17_-_49337392_49337465	0.0553588	SOX3_SOX2	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr7_+_23145884_23145917	0.0552907	SOX3_SOX2	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr5_+_157602404_157602424	0.0552428	SOX3_SOX2	ENST00000522975.1|CTC-436K13.1|ENSG00000253673.1|CTC-436K13.1
hg19_v2_chr19_-_58514129_58514205	0.0549809	SOX3_SOX2	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr14_+_23305760_23305781	0.0549005	SOX3_SOX2	ENST00000311852.6|MMP14|ENSG00000157227.8|matrix metallopeptidase 14 (membrane-inserted)
hg19_v2_chr15_+_86098670_86098685	0.0548895	SOX3_SOX2	ENST00000558811.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr2_+_207024306_207024392	0.05487	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr1_-_226496898_226496955	0.0548615	SOX3_SOX2	ENST00000481685.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr4_-_175443484_175443650	0.0548489	SOX3_SOX2	ENST00000514584.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000542498.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000296521.7|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000422112.2|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000504433.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr20_+_39657454_39657470	0.054808	SOX3_SOX2	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr9_+_70971815_70971841	0.0547366	SOX3_SOX2	ENST00000396392.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5 	ENST00000396396.1|PGM5|ENSG00000154330.8|phosphoglucomutase 5
hg19_v2_chr15_-_54051831_54051904	0.0546936	SOX3_SOX2	ENST00000557913.1|WDR72|ENSG00000166415.10|WD repeat domain 72 	ENST00000360509.5|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr10_-_104179682_104179717	0.0544782	SOX3_SOX2	ENST00000406432.1|PSD|ENSG00000059915.12|pleckstrin and Sec7 domain containing
hg19_v2_chr5_+_15500280_15500312	0.0542911	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr5_+_102455853_102455961	0.0542572	SOX3_SOX2	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr12_-_89919220_89919392	0.0541086	SOX3_SOX2	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr19_-_38720354_38720369	0.0540636	SOX3_SOX2	ENST00000416611.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chr19_+_8455200_8455301	0.0539834	SOX3_SOX2	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr2_+_69240302_69240332	0.0539551	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr20_+_55108302_55108302	0.053912	SOX3_SOX2	ENST00000371325.1|FAM209B|ENSG00000213714.1|family with sequence similarity 209, member B
hg19_v2_chr20_+_21283941_21284007	0.0536648	SOX3_SOX2	ENST00000377191.3|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2 	ENST00000430571.2|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr2_-_153573887_153573930	0.0536433	SOX3_SOX2	ENST00000493468.2|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 	ENST00000545856.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chrX_+_70443050_70443061	0.0536415	SOX3_SOX2	ENST00000361726.6|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr18_-_13726510_13726662	0.053598	SOX3_SOX2	ENST00000322247.3|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000592976.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000402563.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000591269.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A
hg19_v2_chrX_+_86772787_86772817	0.0535045	SOX3_SOX2	ENST00000373114.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr1_-_23670752_23670803	0.0534546	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr4_+_41614720_41614734	0.0534356	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr15_-_59225758_59225837	0.0534179	SOX3_SOX2	ENST00000558486.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000560682.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000249736.7|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000559880.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000536328.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator
hg19_v2_chr6_-_80247140_80247175	0.053305	SOX3_SOX2	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr17_-_42276574_42276742	0.0532973	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr1_+_164529004_164529060	0.0531455	SOX3_SOX2	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr11_-_3400442_3400453	0.0531198	SOX3_SOX2	ENST00000429541.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000532539.1|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr15_+_50474385_50474404	0.0529757	SOX3_SOX2	ENST00000267842.5|SLC27A2|ENSG00000140284.6|solute carrier family 27 (fatty acid transporter), member 2
hg19_v2_chr1_+_200708671_200708744	0.0529313	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr12_-_104532062_104532071	0.052828	SOX3_SOX2	ENST00000240055.3|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr1_-_63153944_63154110	0.052746	SOX3_SOX2	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr11_+_34645791_34645836	0.0526074	SOX3_SOX2	ENST00000529527.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000531728.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000525253.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr14_-_22938665_22938690	0.0524903	SOX3_SOX2	ENST00000535880.2|TRDV3|ENSG00000256590.2|T cell receptor delta variable 3
hg19_v2_chr14_-_25519095_25519280	0.0524164	SOX3_SOX2	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr6_-_72129806_72129970	0.0523345	SOX3_SOX2	ENST00000413945.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000602878.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000436803.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000421704.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000441570.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr3_+_107244229_107244254	0.0522716	SOX3_SOX2	ENST00000456419.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402163.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr13_-_74708372_74708409	0.0520541	SOX3_SOX2	ENST00000377666.4|KLF12|ENSG00000118922.12|Kruppel-like factor 12
hg19_v2_chr9_+_82267508_82267551	0.0519747	SOX3_SOX2	ENST00000490347.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr2_-_178128528_178128574	0.0519314	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr4_+_41614909_41614926	0.0519037	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr10_-_25012597_25012732	0.0518462	SOX3_SOX2	ENST00000396432.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr2_-_86564740_86564756	0.0518444	SOX3_SOX2	ENST00000540790.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000428491.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr12_+_133613937_133613994	0.0518079	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr8_+_133787586_133787673	0.0517566	SOX3_SOX2	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr1_-_23670813_23670816	0.0517466	SOX3_SOX2	ENST00000374612.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chrX_-_45629661_45629677	0.0516591	SOX3_SOX2	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr4_-_83483360_83483386	0.0516555	SOX3_SOX2	ENST00000449862.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr8_-_82644562_82644654	0.0515201	SOX3_SOX2	ENST00000520604.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000521742.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000520635.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1
hg19_v2_chr20_-_62610982_62611008	0.0514826	SOX3_SOX2	ENST00000369886.3|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10 	ENST00000450107.1|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10
hg19_v2_chr6_+_35704804_35704813	0.0514601	SOX3_SOX2	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr10_-_113943447_113943536	0.051364	SOX3_SOX2	ENST00000369425.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000348367.4|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000423155.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial
hg19_v2_chr11_+_13690200_13690244	0.0513363	SOX3_SOX2	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr11_+_94227129_94227195	0.0512247	SOX3_SOX2	ENST00000540349.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000535502.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000545130.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000544253.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000541144.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49
hg19_v2_chr1_-_198906528_198906573	0.0511728	SOX3_SOX2	ENST00000432296.1|MIR181A1HG|ENSG00000229989.3|MIR181A1 host gene (non-protein coding)
hg19_v2_chr19_+_1942453_1942485	0.0511349	SOX3_SOX2	ENST00000591752.1|CSNK1G2|ENSG00000133275.11|casein kinase 1, gamma 2
hg19_v2_chr5_+_137514834_137514910	0.0510395	SOX3_SOX2	ENST00000508792.1|KIF20A|ENSG00000112984.7|kinesin family member 20A 	ENST00000504621.1|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr19_+_52839515_52839572	0.0508153	SOX3_SOX2	ENST00000403906.3|ZNF610|ENSG00000167554.10|zinc finger protein 610 	ENST00000601151.1|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr2_+_14772810_14772853	0.0507735	SOX3_SOX2	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr7_+_77167376_77167395	0.0507112	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr5_+_95187934_95187939	0.0506943	SOX3_SOX2	ENST00000357880.3|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27 	ENST00000436592.1|C5orf27|ENSG00000236882.3|chromosome 5 open reading frame 27
hg19_v2_chr3_-_148804275_148804346	0.0505885	SOX3_SOX2	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr11_-_46141338_46141418	0.0505614	SOX3_SOX2	ENST00000529782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000532010.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000525438.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000533757.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000527782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr19_+_36705504_36705644	0.0504582	SOX3_SOX2	ENST00000456324.1|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr3_-_128207349_128207386	0.0504329	SOX3_SOX2	ENST00000487848.1|GATA2|ENSG00000179348.7|GATA binding protein 2
hg19_v2_chr2_+_32288657_32288688	0.0503889	SOX3_SOX2	ENST00000345662.1|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr2_-_70475701_70475717	0.0503387	SOX3_SOX2	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr2_-_10588630_10588646	0.0502267	SOX3_SOX2	ENST00000234111.4|ODC1|ENSG00000115758.8|ornithine decarboxylase 1
hg19_v2_chr15_+_57211318_57211355	0.05022	SOX3_SOX2	ENST00000557947.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr10_-_14613968_14614048	0.0498758	SOX3_SOX2	ENST00000488576.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000472095.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr14_+_39644387_39644417	0.0497553	SOX3_SOX2	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr7_-_42951509_42951904	0.0496816	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chr5_-_111092873_111092898	0.0495235	SOX3_SOX2	ENST00000509025.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000515855.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr7_+_11013491_11013553	0.0494637	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr20_-_45985464_45985567	0.0494109	SOX3_SOX2	ENST00000458360.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000262975.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr7_+_134464376_134464413	0.0493894	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr1_-_226065330_226065386	0.04934	SOX3_SOX2	ENST00000436966.1|TMEM63A|ENSG00000196187.7|transmembrane protein 63A
hg19_v2_chr19_-_47164386_47164456	0.049335	SOX3_SOX2	ENST00000391916.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3 	ENST00000410105.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr19_-_23941639_23941672	0.0489881	SOX3_SOX2	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr6_-_35656685_35656701	0.0489539	SOX3_SOX2	ENST00000539068.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000540787.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr3_-_141747950_141748004	0.0489242	SOX3_SOX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chrX_-_13956497_13956536	0.0488984	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr20_+_42086525_42086568	0.0488967	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr9_-_130966497_130966662	0.0488793	SOX3_SOX2	ENST00000393608.1|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1 	ENST00000372948.3|CIZ1|ENSG00000148337.15|CDKN1A interacting zinc finger protein 1
hg19_v2_chr2_-_165424973_165425010	0.0488763	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr13_+_103451548_103451561	0.0488479	SOX3_SOX2	ENST00000419638.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr1_-_115053781_115053853	0.048755	SOX3_SOX2	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chr4_+_39046615_39046680	0.0487537	SOX3_SOX2	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr20_+_21284416_21284490	0.0486872	SOX3_SOX2	ENST00000539513.1|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr1_-_45672221_45672260	0.0485746	SOX3_SOX2	ENST00000359600.5|ZSWIM5|ENSG00000162415.6|zinc finger, SWIM-type containing 5
hg19_v2_chr6_+_53794780_53794844	0.0485559	SOX3_SOX2	ENST00000505762.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000511369.1|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1	ENST00000431554.2|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1
hg19_v2_chr5_-_137514333_137514367	0.0485152	SOX3_SOX2	ENST00000411594.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000430331.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr3_-_52719810_52719883	0.0484857	SOX3_SOX2	ENST00000424867.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000394830.3|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000431678.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000450271.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr3_+_159570722_159570733	0.0484823	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr2_+_33172221_33172369	0.048383	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr1_+_25757376_25757411	0.0483267	SOX3_SOX2	ENST00000399766.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000399763.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000374343.4|TMEM57|ENSG00000204178.5|transmembrane protein 57
hg19_v2_chr20_-_45985414_45985462	0.0482016	SOX3_SOX2	ENST00000461685.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000372023.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000540497.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000435836.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000471951.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000352431.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000396281.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000355972.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000360911.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr16_+_68573640_68573698	0.0481709	SOX3_SOX2	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr12_-_46662888_46662910	0.0481423	SOX3_SOX2	ENST00000546893.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr1_-_23495303_23495338	0.0481072	SOX3_SOX2	ENST00000314174.5|LUZP1|ENSG00000169641.9|leucine zipper protein 1 	ENST00000471849.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr2_+_102314161_102314206	0.048104	SOX3_SOX2	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr3_-_188665428_188665478	0.0480303	SOX3_SOX2	ENST00000444488.1|TPRG1-AS1|ENSG00000234076.1|TPRG1 antisense RNA 1
hg19_v2_chr7_+_35840542_35840671	0.0479634	SOX3_SOX2	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr8_-_101965104_101965119	0.0478298	SOX3_SOX2	ENST00000437293.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr19_-_9695195_9695221	0.0478003	SOX3_SOX2	ENST00000320451.6|ZNF121|ENSG00000197961.7|zinc finger protein 121
hg19_v2_chr19_+_52800410_52800454	0.0477963	SOX3_SOX2	ENST00000595962.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000598016.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000334564.7|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000490272.1|ZNF480|ENSG00000198464.9|zinc finger protein 480
hg19_v2_chr2_-_201828356_201828412	0.047733	SOX3_SOX2	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr19_-_37019562_37019593	0.0477133	SOX3_SOX2	ENST00000523638.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chrX_-_19817869_19817922	0.0475718	SOX3_SOX2	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr4_-_83483395_83483510	0.0474759	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr10_-_70092671_70092806	0.0472934	SOX3_SOX2	ENST00000358769.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000432941.1|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000495025.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr13_+_76210448_76210494	0.047192	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr7_+_102553430_102553456	0.0471782	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr21_-_34143971_34143983	0.0470332	SOX3_SOX2	ENST00000290178.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr7_-_140178775_140178866	0.0470071	SOX3_SOX2	ENST00000474576.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000473444.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000471104.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr11_-_85430356_85430420	0.0470003	SOX3_SOX2	ENST00000526999.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr10_+_91174314_91174403	0.0469726	SOX3_SOX2	ENST00000371795.4|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr9_-_98268883_98268947	0.0469504	SOX3_SOX2	ENST00000551630.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000548420.1|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chrX_-_140786896_140786896	0.0469454	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr5_+_111496631_111496703	0.0468353	SOX3_SOX2	ENST00000508590.1|EPB41L4A-AS1|ENSG00000224032.2|EPB41L4A antisense RNA 1
hg19_v2_chr3_+_193310969_193311053	0.0468192	SOX3_SOX2	ENST00000392437.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr3_+_182983126_182983135	0.0466768	SOX3_SOX2	ENST00000481531.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr19_+_32836499_32836625	0.0466182	SOX3_SOX2	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr4_-_175443943_175444049	0.0466074	SOX3_SOX2	ENST00000296522.6|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr10_+_180405_180429	0.0465574	SOX3_SOX2	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr2_-_198299726_198299815	0.0465152	SOX3_SOX2	ENST00000409915.4|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000487698.1|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000414963.2|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000335508.6|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa
hg19_v2_chr4_+_81118647_81118666	0.0464663	SOX3_SOX2	ENST00000415738.2|PRDM8|ENSG00000152784.11|PR domain containing 8
hg19_v2_chr6_-_160210715_160210781	0.0464567	SOX3_SOX2	ENST00000392168.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000321394.7|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr10_+_22610124_22610188	0.0463514	SOX3_SOX2	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr15_+_52043813_52043864	0.0463173	SOX3_SOX2	ENST00000435126.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr10_+_114709999_114710031	0.0463048	SOX3_SOX2	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr1_-_155947951_155947974	0.0462836	SOX3_SOX2	ENST00000313695.7|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2 	ENST00000497907.1|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chrX_+_92929192_92929214	0.0462771	SOX3_SOX2	ENST00000332647.4|FAM133A|ENSG00000179083.5|family with sequence similarity 133, member A
hg19_v2_chr12_-_76953284_76953341	0.0462595	SOX3_SOX2	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr8_+_110346546_110346619	0.046246	SOX3_SOX2	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr22_+_19702069_19702198	0.0461867	SOX3_SOX2	ENST00000412544.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr10_-_14614095_14614112	0.046158	SOX3_SOX2	ENST00000482277.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378462.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr13_+_45694583_45694696	0.046077	SOX3_SOX2	ENST00000340473.6|GTF2F2|ENSG00000188342.7|general transcription factor IIF, polypeptide 2, 30kDa
hg19_v2_chr6_-_35656712_35656723	0.0460151	SOX3_SOX2	ENST00000357266.4|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000542713.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr7_+_44836276_44836283	0.0459888	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr15_+_74908147_74908220	0.0459863	SOX3_SOX2	ENST00000568139.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000563297.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000568488.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000352989.5|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000348245.3|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chr7_-_140178726_140178774	0.0457965	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr5_+_138678131_138678169	0.0456816	SOX3_SOX2	ENST00000394795.2|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000510080.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr2_+_242127924_242128117	0.0456646	SOX3_SOX2	ENST00000402530.3|ANO7|ENSG00000146205.9|anoctamin 7 	ENST00000274979.8|ANO7|ENSG00000146205.9|anoctamin 7 	ENST00000402430.3|ANO7|ENSG00000146205.9|anoctamin 7
hg19_v2_chr20_-_49547910_49547988	0.0456293	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr17_-_9940058_9940074	0.0455327	SOX3_SOX2	ENST00000585266.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr1_+_156338993_156339011	0.0455323	SOX3_SOX2	ENST00000368249.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000368246.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000537040.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000400992.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000255013.3|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000451864.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene)
hg19_v2_chr6_-_111136299_111136352	0.0455197	SOX3_SOX2	ENST00000457688.1|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr10_+_115511434_115511454	0.0455002	SOX3_SOX2	ENST00000369312.4|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chrX_-_85302531_85302570	0.0453699	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr12_-_124456598_124456637	0.0453568	SOX3_SOX2	ENST00000539761.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92 	ENST00000539551.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92
hg19_v2_chr8_+_21777243_21777275	0.0452611	SOX3_SOX2	ENST00000521303.1|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr10_+_27793197_27793247	0.0452177	SOX3_SOX2	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr10_+_14920843_14920921	0.0451104	SOX3_SOX2	ENST00000433779.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000378325.3|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000354919.6|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000313519.5|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000420416.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila)
hg19_v2_chrX_+_9880590_9880723	0.0450382	SOX3_SOX2	ENST00000452575.1|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr6_-_80247105_80247133	0.0450268	SOX3_SOX2	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr4_+_95916947_95917006	0.0450098	SOX3_SOX2	ENST00000506363.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr12_-_54653313_54653416	0.0450046	SOX3_SOX2	ENST00000550411.1|CBX5|ENSG00000094916.9|chromobox homolog 5 	ENST00000439541.2|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr6_+_31865552_31865575	0.0449488	SOX3_SOX2	ENST00000469372.1|C2|ENSG00000166278.10|complement component 2 	ENST00000497706.1|C2|ENSG00000166278.10|complement component 2
hg19_v2_chr7_+_30067973_30068063	0.0449335	SOX3_SOX2	ENST00000258679.7|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000449726.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396257.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396259.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr17_+_57232690_57232860	0.0449295	SOX3_SOX2	ENST00000262293.4|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr8_-_29940464_29940486	0.0448851	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr21_-_40720974_40720994	0.0448832	SOX3_SOX2	ENST00000380748.1|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chrX_+_69509870_69509908	0.0448475	SOX3_SOX2	ENST00000374388.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr4_-_141677267_141677291	0.0447239	SOX3_SOX2	ENST00000442267.2|TBC1D9|ENSG00000109436.7|TBC1 domain family, member 9 (with GRAM domain)
hg19_v2_chr4_+_25915896_25915931	0.0447012	SOX3_SOX2	ENST00000514384.1|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr5_+_70751442_70751456	0.0446563	SOX3_SOX2	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr1_+_174670143_174670160	0.0446273	SOX3_SOX2	ENST00000367687.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like 	ENST00000347255.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr1_-_247267580_247267674	0.0445296	SOX3_SOX2	ENST00000366501.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000366500.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000476158.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000448299.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000358785.4|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000343381.6|ZNF669|ENSG00000188295.10|zinc finger protein 669
hg19_v2_chr8_+_21777159_21777221	0.0445153	SOX3_SOX2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr8_+_124194752_124194835	0.0445054	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr5_+_56205081_56205092	0.0444037	SOX3_SOX2	ENST00000285947.2|SETD9|ENSG00000155542.7|SET domain containing 9 	ENST00000541720.1|SETD9|ENSG00000155542.7|SET domain containing 9
hg19_v2_chr11_+_86511549_86511563	0.0443937	SOX3_SOX2	ENST00000533902.2|PRSS23|ENSG00000150687.7|protease, serine, 23
hg19_v2_chr2_+_9346892_9346948	0.044379	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr3_-_182698381_182698431	0.0443561	SOX3_SOX2	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr4_+_54243798_54243854	0.0443219	SOX3_SOX2	ENST00000337488.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000358575.5|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000507922.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr15_-_50647347_50647366	0.0442201	SOX3_SOX2	ENST00000220429.8|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000429662.2|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr3_+_151986709_151986892	0.0441921	SOX3_SOX2	ENST00000495875.2|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000493459.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324210.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000459747.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr14_-_88459503_88459615	0.0440174	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr5_-_137514288_137514331	0.0439483	SOX3_SOX2	ENST00000454473.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000418329.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000455658.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000230901.5|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000402931.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr15_-_38519066_38519111	0.0439182	SOX3_SOX2	ENST00000561320.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1	ENST00000561161.1|RP11-346D14.1|ENSG00000259380.1|RP11-346D14.1
hg19_v2_chr7_+_73868220_73868300	0.0438582	SOX3_SOX2	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr9_-_125693757_125693818	0.0437966	SOX3_SOX2	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr9_+_103189405_103189455	0.0437951	SOX3_SOX2	ENST00000395067.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr14_+_21566980_21567097	0.0437529	SOX3_SOX2	ENST00000418511.2|TMEM253|ENSG00000232070.4|transmembrane protein 253 	ENST00000554329.2|TMEM253|ENSG00000232070.4|transmembrane protein 253
hg19_v2_chr19_-_55660561_55660722	0.0436537	SOX3_SOX2	ENST00000587758.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000356783.5|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000291901.8|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588426.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588147.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000536926.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588981.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow)
hg19_v2_chr14_-_103989033_103989176	0.0436314	SOX3_SOX2	ENST00000553878.1|CKB|ENSG00000166165.8|creatine kinase, brain 	ENST00000557530.1|CKB|ENSG00000166165.8|creatine kinase, brain
hg19_v2_chr4_+_90033968_90033968	0.0435466	SOX3_SOX2	ENST00000317005.2|TIGD2|ENSG00000180346.2|tigger transposable element derived 2
hg19_v2_chr17_-_18950310_18950310	0.0434973	SOX3_SOX2	ENST00000573099.1|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr2_-_204399976_204400011	0.0434735	SOX3_SOX2	ENST00000457812.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr2_+_177025619_177025619	0.0434578	SOX3_SOX2	ENST00000410016.1|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chrX_-_131352152_131352204	0.0434095	SOX3_SOX2	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr2_+_8822113_8822196	0.0432106	SOX3_SOX2	ENST00000396290.1|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 	ENST00000331129.3|ID2|ENSG00000115738.5|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
hg19_v2_chrX_-_67653291_67653369	0.0431965	SOX3_SOX2	ENST00000540071.1|OPHN1|ENSG00000079482.11|oligophrenin 1
hg19_v2_chr1_-_89357179_89357301	0.0430739	SOX3_SOX2	ENST00000448623.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000418217.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000370500.5|GTF2B|ENSG00000137947.7|general transcription factor IIB
hg19_v2_chr9_-_88874519_88874577	0.0430499	SOX3_SOX2	ENST00000376001.3|C9orf153|ENSG00000187753.8|chromosome 9 open reading frame 153 	ENST00000339137.3|C9orf153|ENSG00000187753.8|chromosome 9 open reading frame 153
hg19_v2_chr10_+_115511213_115511272	0.0430225	SOX3_SOX2	ENST00000361048.1|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr1_+_182808474_182808504	0.0429979	SOX3_SOX2	ENST00000367549.3|DHX9|ENSG00000135829.12|DEAH (Asp-Glu-Ala-His) box helicase 9
hg19_v2_chr18_+_11751493_11751507	0.0429811	SOX3_SOX2	ENST00000269162.5|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr14_-_69619291_69619326	0.0428871	SOX3_SOX2	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr4_+_4388805_4388855	0.0426963	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr22_+_20105012_20105085	0.042632	SOX3_SOX2	ENST00000331821.3|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000411892.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr1_-_200379129_200379174	0.0426224	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr10_+_17272608_17272692	0.042526	SOX3_SOX2	ENST00000421459.2|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr1_+_235492300_235492344	0.0425215	SOX3_SOX2	ENST00000476121.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000497327.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr21_-_40685536_40685591	0.0424648	SOX3_SOX2	ENST00000341322.4|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr8_-_95908902_95908927	0.0424509	SOX3_SOX2	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr20_-_45985172_45985240	0.0422455	SOX3_SOX2	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr13_-_31736478_31736525	0.0422446	SOX3_SOX2	ENST00000445273.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr16_+_1359511_1359804	0.0422391	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chr6_-_24877490_24877583	0.0422247	SOX3_SOX2	ENST00000540914.1|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B 	ENST00000378023.4|FAM65B|ENSG00000111913.11|family with sequence similarity 65, member B
hg19_v2_chr3_-_105588231_105588396	0.0422121	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr5_+_138677515_138677581	0.0422021	SOX3_SOX2	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr1_-_46598284_46598356	0.0421963	SOX3_SOX2	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr1_+_39571026_39571117	0.0421927	SOX3_SOX2	ENST00000524432.1|MACF1|ENSG00000127603.19|microtubule-actin crosslinking factor 1
hg19_v2_chr2_+_32288725_32288776	0.042183	SOX3_SOX2	ENST00000315285.3|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr3_-_71777824_71777871	0.0421764	SOX3_SOX2	ENST00000469524.1|EIF4E3|ENSG00000163412.8|eukaryotic translation initiation factor 4E family member 3
hg19_v2_chr15_+_71184931_71184974	0.0421659	SOX3_SOX2	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr4_-_100484825_100484901	0.0420733	SOX3_SOX2	ENST00000273962.3|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000514547.1|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000455368.2|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae)
hg19_v2_chr2_-_9143786_9143942	0.0420277	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr19_-_39826639_39826825	0.0419554	SOX3_SOX2	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr7_+_115850547_115850626	0.0419467	SOX3_SOX2	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr1_-_202113805_202113883	0.041867	SOX3_SOX2	ENST00000272217.2|ARL8A|ENSG00000143862.3|ADP-ribosylation factor-like 8A
hg19_v2_chr14_-_67981870_67981913	0.0417554	SOX3_SOX2	ENST00000555994.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr19_+_18726786_18726884	0.0417326	SOX3_SOX2	ENST00000594709.1|TMEM59L|ENSG00000105696.4|transmembrane protein 59-like
hg19_v2_chr10_-_70092635_70092666	0.0416613	SOX3_SOX2	ENST00000309049.4|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr6_-_130031358_130031378	0.0416327	SOX3_SOX2	ENST00000368149.2|ARHGAP18|ENSG00000146376.6|Rho GTPase activating protein 18
hg19_v2_chr1_+_29241027_29241095	0.0415591	SOX3_SOX2	ENST00000373797.1|EPB41|ENSG00000159023.14|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
hg19_v2_chr3_-_116163830_116163855	0.0415585	SOX3_SOX2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr4_-_120549163_120549220	0.0415453	SOX3_SOX2	ENST00000394439.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific 	ENST00000420633.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr5_+_76011868_76012005	0.0414749	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr3_-_123680047_123680112	0.0414468	SOX3_SOX2	ENST00000409697.3|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr19_+_47105309_47105329	0.0413694	SOX3_SOX2	ENST00000599839.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000596362.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr12_-_50643664_50643679	0.0413591	SOX3_SOX2	ENST00000550592.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chr11_+_114271251_114271300	0.0413415	SOX3_SOX2	ENST00000375490.5|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr19_+_17326521_17326574	0.0411883	SOX3_SOX2	ENST00000593597.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr19_-_19051927_19051934	0.0411417	SOX3_SOX2	ENST00000600077.1|HOMER3|ENSG00000051128.14|homer homolog 3 (Drosophila)
hg19_v2_chr16_-_15736881_15736928	0.0410791	SOX3_SOX2	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr14_+_35761580_35761679	0.0410318	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr13_+_113656092_113656207	0.0409678	SOX3_SOX2	ENST00000397024.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr8_+_124194875_124194921	0.0409056	SOX3_SOX2	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr7_-_130353553_130353598	0.040826	SOX3_SOX2	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr8_-_65711310_65711324	0.0408251	SOX3_SOX2	ENST00000310193.3|CYP7B1|ENSG00000172817.3|cytochrome P450, family 7, subfamily B, polypeptide 1
hg19_v2_chr2_-_190649082_190649102	0.0407731	SOX3_SOX2	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr5_+_102455968_102456013	0.0407399	SOX3_SOX2	ENST00000358359.3|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr1_+_66797687_66797884	0.0406372	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chrX_-_47863348_47863412	0.0406025	SOX3_SOX2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr3_-_50649192_50649262	0.0406002	SOX3_SOX2	ENST00000443053.2|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein 	ENST00000348721.3|CISH|ENSG00000114737.11|cytokine inducible SH2-containing protein
hg19_v2_chr22_+_20104947_20105003	0.0405535	SOX3_SOX2	ENST00000402752.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr17_+_30813576_30813637	0.0405096	SOX3_SOX2	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr3_+_193311056_193311087	0.0404892	SOX3_SOX2	ENST00000419435.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr15_+_41136734_41136873	0.0404774	SOX3_SOX2	ENST00000568580.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr3_-_52486841_52486882	0.0404736	SOX3_SOX2	ENST00000496590.1|TNNC1|ENSG00000114854.3|troponin C type 1 (slow)
hg19_v2_chr19_+_52264449_52264465	0.040379	SOX3_SOX2	ENST00000599326.1|FPR2|ENSG00000171049.8|formyl peptide receptor 2 	ENST00000598953.1|FPR2|ENSG00000171049.8|formyl peptide receptor 2
hg19_v2_chr12_+_93772326_93772384	0.0403358	SOX3_SOX2	ENST00000550056.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000549992.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000548662.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000547014.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr16_+_67062996_67063019	0.0402747	SOX3_SOX2	ENST00000561924.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr10_+_114710211_114710229	0.0402679	SOX3_SOX2	ENST00000349937.2|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369397.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr21_-_42879909_42880042	0.0402164	SOX3_SOX2	ENST00000458356.1|TMPRSS2|ENSG00000184012.7|transmembrane protease, serine 2 	ENST00000398585.3|TMPRSS2|ENSG00000184012.7|transmembrane protease, serine 2 	ENST00000424093.1|TMPRSS2|ENSG00000184012.7|transmembrane protease, serine 2
hg19_v2_chr8_-_30515693_30515776	0.0401917	SOX3_SOX2	ENST00000355904.4|GTF2E2|ENSG00000197265.4|general transcription factor IIE, polypeptide 2, beta 34kDa
hg19_v2_chr6_-_128841503_128841870	0.0400274	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr1_-_46152174_46152302	0.0399906	SOX3_SOX2	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr4_+_159690218_159690290	0.0398646	SOX3_SOX2	ENST00000264433.6|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr3_-_87040233_87040257	0.0398599	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr19_-_9811347_9811452	0.0398421	SOX3_SOX2	ENST00000585964.1|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000457674.2|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000590544.1|ZNF812|ENSG00000224689.3|zinc finger protein 812
hg19_v2_chr21_-_16437255_16437340	0.0398419	SOX3_SOX2	ENST00000400199.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1 	ENST00000400202.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr2_+_202098203_202098256	0.0397425	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr9_-_86595105_86595184	0.039575	SOX3_SOX2	ENST00000457156.1|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000360384.5|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376263.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr1_-_23670817_23670829	0.039506	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr19_-_49362621_49362640	0.0394618	SOX3_SOX2	ENST00000594195.1|PLEKHA4|ENSG00000105559.7|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 	ENST00000595867.1|PLEKHA4|ENSG00000105559.7|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
hg19_v2_chr1_-_75198940_75199092	0.0394065	SOX3_SOX2	ENST00000417775.1|CRYZ|ENSG00000116791.9|crystallin, zeta (quinone reductase)
hg19_v2_chr9_+_125795788_125795957	0.0393884	SOX3_SOX2	ENST00000373643.5|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr6_+_160183492_160183523	0.0393797	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr18_-_47013586_47013633	0.0392943	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr6_+_135502501_135502652	0.03928	SOX3_SOX2	ENST00000527615.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000420123.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000525369.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000528774.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534121.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534044.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000533624.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr12_+_54378923_54378970	0.0392524	SOX3_SOX2	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr8_-_38325219_38325418	0.039168	SOX3_SOX2	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chrX_+_55744228_55744318	0.039151	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr18_-_32924372_32924430	0.0390131	SOX3_SOX2	ENST00000261332.6|ZNF24|ENSG00000172466.11|zinc finger protein 24 	ENST00000399061.3|ZNF24|ENSG00000172466.11|zinc finger protein 24
hg19_v2_chr10_+_70320413_70320413	0.0390044	SOX3_SOX2	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr2_+_192110199_192110254	0.0390029	SOX3_SOX2	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr11_-_92930556_92930621	0.0389198	SOX3_SOX2	ENST00000529184.1|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr5_+_130599701_130599716	0.0388813	SOX3_SOX2	ENST00000395246.1|CDC42SE2|ENSG00000158985.9|CDC42 small effector 2
hg19_v2_chrX_-_15872914_15873054	0.0387681	SOX3_SOX2	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr19_+_11649532_11649674	0.0387382	SOX3_SOX2	ENST00000252456.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000592923.1|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000535659.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle
hg19_v2_chr21_-_33104367_33104441	0.0387071	SOX3_SOX2	ENST00000286835.7|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4 	ENST00000399804.1|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4
hg19_v2_chr3_-_149688502_149688526	0.0386756	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr7_-_151330218_151330259	0.0386321	SOX3_SOX2	ENST00000476632.1|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr14_+_67707826_67707994	0.0386085	SOX3_SOX2	ENST00000261681.4|MPP5|ENSG00000072415.4|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
hg19_v2_chr12_-_64784471_64784503	0.0385445	SOX3_SOX2	ENST00000333722.5|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr7_-_32931623_32931756	0.0385289	SOX3_SOX2	ENST00000452926.1|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr3_+_23847432_23847512	0.0384827	SOX3_SOX2	ENST00000346855.3|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr7_+_116660246_116660336	0.0384678	SOX3_SOX2	ENST00000434836.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393443.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000465133.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000477742.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393447.4|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393444.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr2_-_197458323_197458416	0.0384428	SOX3_SOX2	ENST00000452031.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr2_+_208576259_208576278	0.0384044	SOX3_SOX2	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr12_+_49761147_49761167	0.038398	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr3_+_16926441_16926463	0.0382967	SOX3_SOX2	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr4_+_71263599_71263668	0.0382567	SOX3_SOX2	ENST00000399575.2|PROL1|ENSG00000171199.5|proline rich, lacrimal 1
hg19_v2_chr10_+_23217006_23217018	0.0382346	SOX3_SOX2	ENST00000376528.4|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000447081.1|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr10_-_89577910_89578010	0.0381757	SOX3_SOX2	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr8_-_66753682_66753743	0.0381694	SOX3_SOX2	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr7_+_138145076_138145116	0.0380984	SOX3_SOX2	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr3_+_29323043_29323132	0.0380654	SOX3_SOX2	ENST00000452462.1|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3 	ENST00000456853.1|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3
hg19_v2_chr15_-_49338748_49338765	0.0378299	SOX3_SOX2	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr13_-_30881621_30881675	0.0378297	SOX3_SOX2	ENST00000380615.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr2_-_99347528_99347603	0.037814	SOX3_SOX2	ENST00000393487.1|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr5_+_74907284_74907284	0.0377652	SOX3_SOX2	ENST00000601380.2|ANKDD1B|ENSG00000189045.9|ankyrin repeat and death domain containing 1B
hg19_v2_chr4_+_144303093_144303132	0.0377159	SOX3_SOX2	ENST00000505913.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr16_-_65268795_65268836	0.0376504	SOX3_SOX2	ENST00000565901.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2	ENST00000567058.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2
hg19_v2_chr14_+_77924204_77924229	0.0376329	SOX3_SOX2	ENST00000555133.1|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
hg19_v2_chr7_+_114562909_114563131	0.0376079	SOX3_SOX2	ENST00000423503.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing 	ENST00000427207.1|MDFIC|ENSG00000135272.5|MyoD family inhibitor domain containing
hg19_v2_chr8_+_59323823_59323947	0.0375819	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr20_-_30458354_30458384	0.0374628	SOX3_SOX2	ENST00000428829.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr4_-_157892498_157892546	0.0374506	SOX3_SOX2	ENST00000502773.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr5_+_140705777_140705844	0.037399	SOX3_SOX2	ENST00000606901.1|AC005618.6|ENSG00000272070.1|AC005618.6	ENST00000606674.1|AC005618.6|ENSG00000272070.1|AC005618.6
hg19_v2_chr9_-_117880477_117880536	0.0373159	SOX3_SOX2	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr19_+_48773337_48773359	0.0373029	SOX3_SOX2	ENST00000595607.1|ZNF114|ENSG00000178150.4|zinc finger protein 114
hg19_v2_chr3_-_49459865_49459876	0.037301	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr19_+_19779589_19779616	0.0372908	SOX3_SOX2	ENST00000541458.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr11_-_46142505_46142565	0.0372745	SOX3_SOX2	ENST00000524497.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000418153.2|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr11_-_64013663_64013672	0.037248	SOX3_SOX2	ENST00000392210.2|PPP1R14B|ENSG00000173457.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
hg19_v2_chr1_-_65432171_65432252	0.0372261	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr6_-_3227877_3227969	0.0372169	SOX3_SOX2	ENST00000259818.7|TUBB2B|ENSG00000137285.9|tubulin, beta 2B class IIb
hg19_v2_chr19_+_16187816_16187838	0.0371507	SOX3_SOX2	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr1_-_95392635_95392834	0.037142	SOX3_SOX2	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr6_-_75912508_75912580	0.0371295	SOX3_SOX2	ENST00000416123.2|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chrX_-_80457385_80457441	0.0371046	SOX3_SOX2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chr1_+_109419596_109419640	0.0370887	SOX3_SOX2	ENST00000435987.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2 	ENST00000264126.3|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr5_-_98262240_98262240	0.0370696	SOX3_SOX2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr12_+_124457746_124457842	0.0370624	SOX3_SOX2	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr10_-_65028938_65028989	0.0370242	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr6_+_44215603_44215666	0.0370163	SOX3_SOX2	ENST00000371554.1|HSP90AB1|ENSG00000096384.15|heat shock protein 90kDa alpha (cytosolic), class B member 1
hg19_v2_chr2_-_180129484_180129574	0.0369588	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr3_-_107596910_107596940	0.036929	SOX3_SOX2	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr1_+_109419804_109419878	0.0368996	SOX3_SOX2	ENST00000435475.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr1_+_111992064_111992142	0.03687	SOX3_SOX2	ENST00000483994.1|ATP5F1|ENSG00000116459.6|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1
hg19_v2_chr2_-_178128250_178128300	0.0368642	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr1_-_158173659_158173674	0.0368599	SOX3_SOX2	ENST00000415019.1|RP11-404O13.5|ENSG00000176320.2|RP11-404O13.5
hg19_v2_chr4_-_76649546_76649709	0.0368591	SOX3_SOX2	ENST00000508510.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000509561.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000499709.2|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000511868.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr12_+_133613878_133613924	0.0368157	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr2_-_232329186_232329305	0.0368098	SOX3_SOX2	ENST00000322723.4|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr4_+_57774042_57774114	0.0367466	SOX3_SOX2	ENST00000309042.7|REST|ENSG00000084093.11|RE1-silencing transcription factor
hg19_v2_chr7_+_29234101_29234130	0.0366371	SOX3_SOX2	ENST00000435288.2|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr17_-_30669138_30669208	0.0365794	SOX3_SOX2	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr19_+_1105110_1105259	0.0365635	SOX3_SOX2	ENST00000587648.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chrX_-_119603138_119603220	0.0365566	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr6_+_97372645_97372665	0.0365314	SOX3_SOX2	ENST00000536676.1|KLHL32|ENSG00000186231.12|kelch-like family member 32 	ENST00000544166.1|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr7_+_73868439_73868450	0.0365246	SOX3_SOX2	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr11_+_7273181_7273223	0.0364444	SOX3_SOX2	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr2_-_151344172_151344243	0.0363779	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr3_-_141747439_141747452	0.0363604	SOX3_SOX2	ENST00000467667.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr2_-_157189180_157189290	0.0362724	SOX3_SOX2	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr11_+_66045634_66045710	0.0362689	SOX3_SOX2	ENST00000528852.1|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2 	ENST00000311445.6|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2
hg19_v2_chr19_+_8455077_8455083	0.0362619	SOX3_SOX2	ENST00000328024.6|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr9_+_96846740_96846767	0.0362381	SOX3_SOX2	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr1_+_90460661_90460745	0.0362318	SOX3_SOX2	ENST00000340281.4|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000361911.5|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000370447.3|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000455342.2|ZNF326|ENSG00000162664.12|zinc finger protein 326
hg19_v2_chr11_-_95522639_95522725	0.036171	SOX3_SOX2	ENST00000536839.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr4_+_15683404_15683432	0.0361349	SOX3_SOX2	ENST00000422728.2|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr4_-_99578776_99578786	0.0361241	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr17_-_48277552_48277608	0.0361103	SOX3_SOX2	ENST00000507689.1|COL1A1|ENSG00000108821.9|collagen, type I, alpha 1
hg19_v2_chr4_-_103266219_103266296	0.0361023	SOX3_SOX2	ENST00000394833.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr7_+_29186174_29186188	0.0360402	SOX3_SOX2	ENST00000439384.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr15_-_40331342_40331354	0.0360064	SOX3_SOX2	ENST00000559081.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr14_-_104029013_104029168	0.0359709	SOX3_SOX2	ENST00000299204.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000557666.1|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr16_+_19222479_19222531	0.0359495	SOX3_SOX2	ENST00000568433.1|SYT17|ENSG00000103528.12|synaptotagmin XVII
hg19_v2_chr7_-_105516923_105516982	0.0359046	SOX3_SOX2	ENST00000478915.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr14_-_50698276_50698304	0.0358822	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr3_+_130613226_130613485	0.0358231	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr4_+_52709229_52709345	0.0357986	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chrX_+_102469997_102470094	0.0357864	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr7_-_26904317_26904362	0.0357257	SOX3_SOX2	ENST00000345317.2|SKAP2|ENSG00000005020.8|src kinase associated phosphoprotein 2
hg19_v2_chr5_-_157079372_157079395	0.0357176	SOX3_SOX2	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr6_+_56954808_56954845	0.0356526	SOX3_SOX2	ENST00000510483.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370706.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000357489.3|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr11_-_3400330_3400422	0.0356098	SOX3_SOX2	ENST00000427810.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000005082.9|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000534569.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000438262.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528796.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528410.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000529678.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000354599.6|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000526601.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000525502.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000533036.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000399602.4|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr13_+_111855414_111855417	0.0355315	SOX3_SOX2	ENST00000375737.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr8_+_11660120_11660221	0.0354524	SOX3_SOX2	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr2_-_198175495_198175525	0.0354398	SOX3_SOX2	ENST00000409153.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000409919.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000539527.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44
hg19_v2_chr4_-_7941596_7941653	0.0354225	SOX3_SOX2	ENST00000420658.1|AFAP1|ENSG00000196526.6|actin filament associated protein 1 	ENST00000358461.2|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr7_+_56119323_56119492	0.0353809	SOX3_SOX2	ENST00000275603.4|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000335503.3|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000540286.1|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1)
hg19_v2_chr15_-_60771280_60771351	0.0353537	SOX3_SOX2	ENST00000560072.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560406.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560520.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000261520.4|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000439632.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr2_+_181845763_181845795	0.0352459	SOX3_SOX2	ENST00000602499.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr14_-_21994525_21994634	0.035241	SOX3_SOX2	ENST00000538754.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr5_+_43602750_43602838	0.0352283	SOX3_SOX2	ENST00000505678.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512422.1|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000264663.5|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr1_+_97187318_97187380	0.0351929	SOX3_SOX2	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr12_-_76817036_76817070	0.0351699	SOX3_SOX2	ENST00000546946.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr22_-_22090043_22090058	0.0351567	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr19_+_17326141_17326178	0.0351178	SOX3_SOX2	ENST00000445667.2|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000263897.5|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr13_+_98795664_98795734	0.0350729	SOX3_SOX2	ENST00000376581.5|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr17_+_15602891_15603091	0.0350652	SOX3_SOX2	ENST00000421016.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000593105.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580259.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583566.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000472486.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000395894.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000581529.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000579694.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000580393.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000585194.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000583031.1|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA. 	ENST00000464847.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr2_-_238499337_238499423	0.0350607	SOX3_SOX2	ENST00000411462.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family 	ENST00000409822.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr14_-_105531759_105531782	0.0349822	SOX3_SOX2	ENST00000329797.3|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000539291.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132 	ENST00000392585.2|GPR132|ENSG00000183484.7|G protein-coupled receptor 132
hg19_v2_chr3_+_159557637_159557650	0.0349614	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr7_-_17500294_17500304	0.0349354	SOX3_SOX2	ENST00000439046.1|AC019117.2|ENSG00000236039.1|AC019117.2
hg19_v2_chr1_+_150039369_150039444	0.0348958	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr7_-_100061869_100061900	0.0347911	SOX3_SOX2	ENST00000332375.3|C7orf61|ENSG00000185955.4|chromosome 7 open reading frame 61
hg19_v2_chr10_-_35104185_35104267	0.0347596	SOX3_SOX2	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr15_+_78730531_78730612	0.0346586	SOX3_SOX2	ENST00000258886.8|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr2_+_70056762_70056847	0.0346236	SOX3_SOX2	ENST00000282570.3|GMCL1|ENSG00000087338.4|germ cell-less, spermatogenesis associated 1
hg19_v2_chr15_-_56035177_56035355	0.0345919	SOX3_SOX2	ENST00000389286.4|PRTG|ENSG00000166450.8|protogenin 	ENST00000561292.1|PRTG|ENSG00000166450.8|protogenin
hg19_v2_chr9_+_116638630_116638664	0.0344526	SOX3_SOX2	ENST00000452710.1|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000374124.4|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr11_+_125034640_125034655	0.0342705	SOX3_SOX2	ENST00000542175.1|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr11_-_18548426_18548500	0.0342338	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr5_+_172386419_172386480	0.0342201	SOX3_SOX2	ENST00000265100.2|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1 	ENST00000519239.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr11_-_130184470_130184533	0.0341945	SOX3_SOX2	ENST00000357899.4|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44 	ENST00000397753.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr8_-_12612962_12613049	0.0341781	SOX3_SOX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr4_+_153857468_153857520	0.0341635	SOX3_SOX2	ENST00000511601.1|FHDC1|ENSG00000137460.4|FH2 domain containing 1
hg19_v2_chr1_+_36621174_36621191	0.0341297	SOX3_SOX2	ENST00000429533.2|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr2_-_178128149_178128198	0.0341183	SOX3_SOX2	ENST00000423513.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr12_+_124997766_124997772	0.0340287	SOX3_SOX2	ENST00000543970.1|RP11-83B20.1|ENSG00000214650.2|RP11-83B20.1
hg19_v2_chr4_+_128703295_128703496	0.0340048	SOX3_SOX2	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr6_+_155537771_155537868	0.0340002	SOX3_SOX2	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr17_-_79359154_79359164	0.033989	SOX3_SOX2	ENST00000572077.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr11_+_114271314_114271365	0.0339776	SOX3_SOX2	ENST00000541475.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr14_+_54976603_54976676	0.0339619	SOX3_SOX2	ENST00000557317.1|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr8_-_70745575_70745625	0.0339338	SOX3_SOX2	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr5_+_125935960_125935960	0.0339291	SOX3_SOX2	ENST00000297540.4|PHAX|ENSG00000164902.9|phosphorylated adaptor for RNA export
hg19_v2_chr3_-_123680246_123680264	0.0338981	SOX3_SOX2	ENST00000488653.2|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr9_+_15422702_15422883	0.0338226	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr5_+_138089100_138089146	0.0336444	SOX3_SOX2	ENST00000520339.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000355078.5|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000302763.7|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000518910.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr2_-_48132814_48132917	0.0336075	SOX3_SOX2	ENST00000316377.4|FBXO11|ENSG00000138081.15|F-box protein 11 	ENST00000378314.3|FBXO11|ENSG00000138081.15|F-box protein 11
hg19_v2_chrX_+_135229559_135229576	0.0335449	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr17_-_71258491_71258491	0.0335335	SOX3_SOX2	ENST00000397671.1|CPSF4L|ENSG00000187959.5|cleavage and polyadenylation specific factor 4-like
hg19_v2_chr3_+_43328004_43328095	0.0334149	SOX3_SOX2	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr9_-_73483926_73483945	0.0333163	SOX3_SOX2	ENST00000396283.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000361823.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr15_+_41136586_41136725	0.0333161	SOX3_SOX2	ENST00000431806.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr21_-_43299404_43299591	0.0332872	SOX3_SOX2	ENST00000422911.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000398548.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000538201.1|PRDM15|ENSG00000141956.9|PR domain containing 15 	ENST00000269844.3|PRDM15|ENSG00000141956.9|PR domain containing 15
hg19_v2_chr9_-_74383302_74383437	0.0332777	SOX3_SOX2	ENST00000377066.5|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chrX_+_17653413_17653413	0.0332563	SOX3_SOX2	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr13_+_103451399_103451539	0.0332527	SOX3_SOX2	ENST00000257336.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing 	ENST00000448849.2|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr13_-_36920615_36920659	0.0332417	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr2_+_27719697_27719723	0.0332415	SOX3_SOX2	ENST00000264717.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator 	ENST00000424318.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator
hg19_v2_chr18_-_74844713_74844725	0.0332009	SOX3_SOX2	ENST00000397860.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr5_+_34656331_34656351	0.0331784	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr6_+_20403997_20404034	0.0331522	SOX3_SOX2	ENST00000535432.1|E2F3|ENSG00000112242.10|E2F transcription factor 3
hg19_v2_chr3_-_114343768_114343822	0.0330624	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr6_-_127664683_127664718	0.0329495	SOX3_SOX2	ENST00000528402.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454591.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr17_-_18950950_18950950	0.0329425	SOX3_SOX2	ENST00000284154.5|GRAP|ENSG00000154016.9|GRB2-related adaptor protein
hg19_v2_chr6_+_13925318_13925424	0.0329412	SOX3_SOX2	ENST00000423553.2|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000537388.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr5_+_172386517_172386523	0.0328983	SOX3_SOX2	ENST00000519522.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr5_-_179072047_179072047	0.0328899	SOX3_SOX2	ENST00000448248.2|C5orf60|ENSG00000204661.5|chromosome 5 open reading frame 60
hg19_v2_chr17_-_39681578_39681697	0.0328888	SOX3_SOX2	ENST00000593096.1|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr11_+_68228186_68228281	0.0328868	SOX3_SOX2	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr12_-_49581152_49581241	0.0328707	SOX3_SOX2	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr3_+_107241882_107241904	0.0328332	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr7_+_94537542_94537591	0.0328062	SOX3_SOX2	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr1_-_243417762_243417788	0.0327998	SOX3_SOX2	ENST00000522191.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr18_+_56530794_56530845	0.0327786	SOX3_SOX2	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr1_-_26231589_26231635	0.0327567	SOX3_SOX2	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr7_+_29234028_29234043	0.0327244	SOX3_SOX2	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr10_-_14614122_14614188	0.032696	SOX3_SOX2	ENST00000378465.3|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000452706.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378458.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr2_-_204400013_204400058	0.0326774	SOX3_SOX2	ENST00000374489.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000374488.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000308091.4|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000453034.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000420371.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr3_+_130613001_130613078	0.0326425	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_+_110026544_110026608	0.0326097	SOX3_SOX2	ENST00000369870.3|ATXN7L2|ENSG00000162650.11|ataxin 7-like 2
hg19_v2_chr21_+_43442100_43442192	0.032608	SOX3_SOX2	ENST00000455701.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1 	ENST00000596595.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1
hg19_v2_chr16_+_32264645_32264662	0.0325846	SOX3_SOX2	ENST00000569631.1|TP53TG3D|ENSG00000205456.7|TP53 target 3D 	ENST00000354614.3|TP53TG3D|ENSG00000205456.7|TP53 target 3D
hg19_v2_chr12_+_49761273_49761330	0.0324528	SOX3_SOX2	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr12_+_16500037_16500076	0.0324432	SOX3_SOX2	ENST00000536371.1|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1 	ENST00000010404.2|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1
hg19_v2_chr11_-_118927561_118927665	0.0324094	SOX3_SOX2	ENST00000530473.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr9_-_103115135_103115183	0.0323494	SOX3_SOX2	ENST00000537512.1|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr4_-_52904425_52904471	0.0323349	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr3_+_44626446_44626477	0.0323334	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr2_+_181845074_181845118	0.0322689	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr10_+_123923105_123923160	0.0322579	SOX3_SOX2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chrY_-_15591485_15591551	0.0322471	SOX3_SOX2	ENST00000382896.4|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000537580.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000540140.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000545955.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 	ENST00000538878.1|UTY|ENSG00000183878.11|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
hg19_v2_chr7_-_8302164_8302196	0.0322349	SOX3_SOX2	ENST00000447326.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa 	ENST00000406470.2|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr4_+_144258021_144258052	0.0321197	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr12_+_57854274_57854274	0.0320771	SOX3_SOX2	ENST00000528432.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr8_+_79428539_79428606	0.0320544	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr4_-_106629796_106629863	0.0320067	SOX3_SOX2	ENST00000416543.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000515819.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000420368.2|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000503746.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000340139.5|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000433009.1|INTS12|ENSG00000138785.10|integrator complex subunit 12
hg19_v2_chr10_-_65028817_65028828	0.0320062	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr2_-_3521518_3521518	0.0319567	SOX3_SOX2	ENST00000382093.5|ADI1|ENSG00000182551.9|acireductone dioxygenase 1
hg19_v2_chr17_-_17184605_17184622	0.0319162	SOX3_SOX2	ENST00000268717.5|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr2_+_99953816_99953894	0.0319036	SOX3_SOX2	ENST00000289371.6|EIF5B|ENSG00000158417.6|eukaryotic translation initiation factor 5B
hg19_v2_chr8_-_42752418_42752452	0.0318685	SOX3_SOX2	ENST00000524954.1|RNF170|ENSG00000120925.9|ring finger protein 170
hg19_v2_chr15_+_57210818_57210930	0.0318565	SOX3_SOX2	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr8_+_144295067_144295131	0.0317379	SOX3_SOX2	ENST00000330824.2|GPIHBP1|ENSG00000182851.2|glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
hg19_v2_chr6_-_108582168_108582256	0.0317192	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chr1_+_24286287_24286326	0.0316966	SOX3_SOX2	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr4_+_86699834_86699889	0.0316963	SOX3_SOX2	ENST00000395183.2|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr19_+_58790314_58790358	0.031635	SOX3_SOX2	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr13_-_108518986_108519083	0.0316285	SOX3_SOX2	ENST00000375915.2|FAM155A|ENSG00000204442.2|family with sequence similarity 155, member A
hg19_v2_chr12_+_48225126_48225164	0.0316058	SOX3_SOX2	ENST00000550909.1|RP5-1057I20.2|ENSG00000257488.1|RP5-1057I20.2	ENST00000550720.1|RP5-1057I20.2|ENSG00000257488.1|RP5-1057I20.2	ENST00000548564.1|RP5-1057I20.2|ENSG00000257488.1|RP5-1057I20.2
hg19_v2_chr18_+_56532100_56532130	0.0315408	SOX3_SOX2	ENST00000588456.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589481.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000591049.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr10_+_121578211_121578248	0.0315336	SOX3_SOX2	ENST00000369080.3|INPP5F|ENSG00000198825.7|inositol polyphosphate-5-phosphatase F
hg19_v2_chr11_+_46402482_46402502	0.0314932	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr9_+_123884038_123884096	0.0314825	SOX3_SOX2	ENST00000373847.1|CNTRL|ENSG00000119397.12|centriolin
hg19_v2_chr9_-_86322516_86322632	0.0314584	SOX3_SOX2	ENST00000529923.1|UBQLN1|ENSG00000135018.9|ubiquilin 1
hg19_v2_chrX_+_135229600_135229624	0.0313743	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr22_+_27053422_27053488	0.031338	SOX3_SOX2	ENST00000413665.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000421151.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000456129.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000430080.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr1_+_92632542_92632609	0.0313223	SOX3_SOX2	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chr14_-_35099377_35099389	0.0313193	SOX3_SOX2	ENST00000362031.4|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chrX_+_102631844_102632109	0.0312702	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr14_+_75230011_75230120	0.0311942	SOX3_SOX2	ENST00000552421.1|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000325680.7|YLPM1|ENSG00000119596.13|YLP motif containing 1 	ENST00000238571.3|YLPM1|ENSG00000119596.13|YLP motif containing 1
hg19_v2_chr4_+_113558612_113558669	0.0311756	SOX3_SOX2	ENST00000505034.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7 	ENST00000324052.6|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr8_+_95835438_95835537	0.0311684	SOX3_SOX2	ENST00000521860.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519457.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519053.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000523731.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000447247.1|INTS8|ENSG00000164941.9|integrator complex subunit 8
hg19_v2_chr19_+_21324863_21324880	0.0311537	SOX3_SOX2	ENST00000598331.1|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr3_+_149535022_149535031	0.0310629	SOX3_SOX2	ENST00000466795.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr19_-_10047219_10047235	0.0310278	SOX3_SOX2	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr2_+_70142189_70142223	0.0309673	SOX3_SOX2	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr13_+_111893533_111893591	0.0309449	SOX3_SOX2	ENST00000478679.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr1_+_35734562_35734573	0.0308701	SOX3_SOX2	ENST00000314607.6|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4 	ENST00000373297.2|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr7_-_105319536_105319611	0.0308649	SOX3_SOX2	ENST00000477775.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr19_+_57019212_57019250	0.030814	SOX3_SOX2	ENST00000308031.5|ZNF471|ENSG00000196263.3|zinc finger protein 471 	ENST00000591537.1|ZNF471|ENSG00000196263.3|zinc finger protein 471
hg19_v2_chr2_+_114647504_114647557	0.0308045	SOX3_SOX2	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr11_+_32112431_32112454	0.0307954	SOX3_SOX2	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr12_+_56615761_56615815	0.0307851	SOX3_SOX2	ENST00000447747.1|NABP2|ENSG00000139579.8|nucleic acid binding protein 2 	ENST00000399713.2|NABP2|ENSG00000139579.8|nucleic acid binding protein 2
hg19_v2_chr9_+_90497741_90497775	0.0307521	SOX3_SOX2	ENST00000325643.5|SPATA31E1|ENSG00000177992.9|SPATA31 subfamily E, member 1
hg19_v2_chr22_-_32555275_32555296	0.0306871	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr9_-_123476719_123476810	0.0306694	SOX3_SOX2	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr20_-_60640866_60640901	0.0306557	SOX3_SOX2	ENST00000252996.4|TAF4|ENSG00000130699.12|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
hg19_v2_chr15_-_49338624_49338700	0.0305716	SOX3_SOX2	ENST00000261847.3|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000380927.2|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000559424.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr1_-_153643442_153643524	0.0305242	SOX3_SOX2	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr2_+_69240415_69240438	0.0305211	SOX3_SOX2	ENST00000409829.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr20_+_19738792_19738884	0.0304612	SOX3_SOX2	ENST00000412571.1|RP1-122P22.2|ENSG00000233895.1|RP1-122P22.2
hg19_v2_chr4_+_699610_699732	0.0304355	SOX3_SOX2	ENST00000521023.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr2_-_37551846_37551952	0.0304167	SOX3_SOX2	ENST00000443187.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr4_-_120548779_120548825	0.0304114	SOX3_SOX2	ENST00000264805.5|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr21_-_40685504_40685516	0.0303657	SOX3_SOX2	ENST00000380800.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr19_+_45204630_45204630	0.0303396	SOX3_SOX2	ENST00000405314.2|CEACAM16|ENSG00000213892.6|carcinoembryonic antigen-related cell adhesion molecule 16
hg19_v2_chr12_-_18243075_18243091	0.0303222	SOX3_SOX2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr1_-_115300592_115300648	0.0303072	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr6_-_132834184_132834337	0.0300496	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr11_-_89224299_89224466	0.0300004	SOX3_SOX2	ENST00000343727.5|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000531342.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000375979.3|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr7_+_128312346_128312371	0.0299928	SOX3_SOX2	ENST00000480462.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000378704.3|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000477515.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2
hg19_v2_chr9_-_6645628_6645659	0.0299384	SOX3_SOX2	ENST00000321612.6|GLDC|ENSG00000178445.8|glycine dehydrogenase (decarboxylating)
hg19_v2_chr5_+_6766004_6766038	0.0299063	SOX3_SOX2	ENST00000506093.1|RP11-332J15.3|ENSG00000251365.1|RP11-332J15.3
hg19_v2_chr15_-_44486632_44486664	0.0298976	SOX3_SOX2	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr6_-_15586238_15586256	0.0298853	SOX3_SOX2	ENST00000462989.2|DTNBP1|ENSG00000047579.15|dystrobrevin binding protein 1
hg19_v2_chr1_+_213123976_213124009	0.0298839	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr17_-_76719638_76719657	0.0298679	SOX3_SOX2	ENST00000587308.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr14_-_104028595_104028677	0.0298403	SOX3_SOX2	ENST00000337322.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000445922.2|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr3_+_19988566_19988648	0.029763	SOX3_SOX2	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr8_-_73793975_73794038	0.0297432	SOX3_SOX2	ENST00000523881.1|RP11-1145L24.1|ENSG00000253784.1|RP11-1145L24.1
hg19_v2_chr1_+_159141397_159141549	0.0297171	SOX3_SOX2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr15_-_70994612_70994652	0.0296961	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr12_-_67072714_67072925	0.0296119	SOX3_SOX2	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr1_-_150601588_150601631	0.0294766	SOX3_SOX2	ENST00000513281.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000361631.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000361532.5|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr2_+_227771404_227771431	0.0294419	SOX3_SOX2	ENST00000409053.1|RHBDD1|ENSG00000144468.12|rhomboid domain containing 1
hg19_v2_chr6_+_44355257_44355315	0.0294224	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr17_-_73775839_73775868	0.0294044	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr19_-_38746979_38747050	0.029402	SOX3_SOX2	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr12_+_93963590_93963628	0.0293887	SOX3_SOX2	ENST00000340600.2|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr14_-_89021077_89021230	0.0293721	SOX3_SOX2	ENST00000556564.1|PTPN21|ENSG00000070778.8|protein tyrosine phosphatase, non-receptor type 21
hg19_v2_chr8_-_27468717_27468788	0.0293485	SOX3_SOX2	ENST00000520796.1|CLU|ENSG00000120885.15|clusterin 	ENST00000520491.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr18_+_59415396_59415427	0.0293412	SOX3_SOX2	ENST00000567801.1|RP11-1096D5.1|ENSG00000260440.1|RP11-1096D5.1
hg19_v2_chr17_+_4613918_4614000	0.0293053	SOX3_SOX2	ENST00000574954.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000346341.2|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000572457.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000381488.6|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000412477.3|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000571428.1|ARRB2|ENSG00000141480.13|arrestin, beta 2 	ENST00000575877.1|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr12_-_100378006_100378049	0.0293019	SOX3_SOX2	ENST00000547776.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000329257.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000547010.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr12_-_32040123_32040161	0.0292919	SOX3_SOX2	ENST00000535163.1|RP11-428G5.5|ENSG00000255760.1|RP11-428G5.5
hg19_v2_chr22_+_40342819_40342836	0.0292383	SOX3_SOX2	ENST00000407075.3|GRAP2|ENSG00000100351.12|GRB2-related adaptor protein 2
hg19_v2_chrX_+_55744166_55744222	0.0291973	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr12_-_10875831_10876025	0.0291343	SOX3_SOX2	ENST00000279550.7|YBX3|ENSG00000060138.8|Y box binding protein 3 	ENST00000228251.4|YBX3|ENSG00000060138.8|Y box binding protein 3
hg19_v2_chr3_-_69101461_69101494	0.0291088	SOX3_SOX2	ENST00000543976.1|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr20_-_39317868_39317884	0.0291077	SOX3_SOX2	ENST00000373313.2|MAFB|ENSG00000204103.2|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
hg19_v2_chr3_-_176914191_176914235	0.0290143	SOX3_SOX2	ENST00000437738.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000424913.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000443315.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr12_+_94542459_94542513	0.0289137	SOX3_SOX2	ENST00000258526.4|PLXNC1|ENSG00000136040.4|plexin C1
hg19_v2_chr3_-_172312460_172312516	0.028878	SOX3_SOX2	ENST00000418839.2|RP11-408H1.3|ENSG00000223387.2|RP11-408H1.3
hg19_v2_chr2_-_39664206_39664251	0.0288141	SOX3_SOX2	ENST00000484274.1|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3
hg19_v2_chr1_+_32739714_32739730	0.028795	SOX3_SOX2	ENST00000461712.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000373562.3|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000477031.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000373557.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase
hg19_v2_chr8_+_86376081_86376142	0.0287835	SOX3_SOX2	ENST00000285379.5|CA2|ENSG00000104267.5|carbonic anhydrase II
hg19_v2_chr11_+_130184888_130184943	0.028692	SOX3_SOX2	ENST00000602376.1|RP11-121M22.1|ENSG00000175773.8|RP11-121M22.1	ENST00000532116.3|RP11-121M22.1|ENSG00000175773.8|RP11-121M22.1	ENST00000602310.1|RP11-121M22.1|ENSG00000175773.8|RP11-121M22.1
hg19_v2_chr14_+_24521202_24521267	0.0286912	SOX3_SOX2	ENST00000334420.7|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B 	ENST00000342740.5|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B
hg19_v2_chr2_+_106361333_106361520	0.0286475	SOX3_SOX2	ENST00000233154.4|NCK2|ENSG00000071051.9|NCK adaptor protein 2 	ENST00000451463.2|NCK2|ENSG00000071051.9|NCK adaptor protein 2
hg19_v2_chr1_+_54411995_54412063	0.0286083	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr19_+_7580103_7580178	0.0285596	SOX3_SOX2	ENST00000596712.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chrX_+_70435044_70435109	0.0285551	SOX3_SOX2	ENST00000374029.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000374022.3|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000447581.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr4_-_10458982_10459007	0.0284637	SOX3_SOX2	ENST00000326756.3|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr14_-_65569186_65569243	0.0284463	SOX3_SOX2	ENST00000555932.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358664.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000284165.6|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358402.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000246163.2|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556979.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000555667.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000557746.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556443.1|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr22_+_20105259_20105476	0.0284248	SOX3_SOX2	ENST00000416427.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000421656.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000423859.1|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000418705.2|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr1_+_65886326_65886406	0.0282931	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr14_-_67981916_67982021	0.0282541	SOX3_SOX2	ENST00000357461.2|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr19_+_23299777_23299844	0.0282296	SOX3_SOX2	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr1_+_147400506_147400549	0.0282216	SOX3_SOX2	ENST00000314163.7|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B 	ENST00000468618.2|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B
hg19_v2_chr4_-_69111401_69111438	0.0281898	SOX3_SOX2	ENST00000332644.5|TMPRSS11B|ENSG00000185873.7|transmembrane protease, serine 11B
hg19_v2_chr3_+_138067666_138067745	0.0281479	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr3_+_31574189_31574282	0.0281213	SOX3_SOX2	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr8_-_18871159_18871201	0.0281098	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr1_+_89990431_89990493	0.02806	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr12_+_49297887_49297898	0.0280521	SOX3_SOX2	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr17_-_27278304_27278408	0.0280303	SOX3_SOX2	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr4_-_83483094_83483165	0.0279654	SOX3_SOX2	ENST00000508701.1|TMEM150C|ENSG00000249242.3|transmembrane protein 150C 	ENST00000454948.3|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr2_-_169769787_169769861	0.0279592	SOX3_SOX2	ENST00000451987.1|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr18_+_3252265_3252284	0.0279055	SOX3_SOX2	ENST00000580887.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000536605.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr7_-_27219849_27219880	0.0278414	SOX3_SOX2	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr16_+_16434185_16434185	0.0278333	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr14_+_58754751_58754751	0.0278269	SOX3_SOX2	ENST00000598233.1|AL132989.1|ENSG00000268466.1|AL132989.1
hg19_v2_chr19_+_43325937_43326015	0.0278151	SOX3_SOX2	ENST00000425668.1|AC004603.4|ENSG00000225877.1|AC004603.4
hg19_v2_chr14_-_57960545_57960595	0.0277991	SOX3_SOX2	ENST00000526336.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000216445.3|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr5_+_170288856_170288920	0.0277747	SOX3_SOX2	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr10_+_82214010_82214021	0.0277552	SOX3_SOX2	ENST00000481124.1|TSPAN14|ENSG00000108219.10|tetraspanin 14
hg19_v2_chr21_-_40720995_40721126	0.027749	SOX3_SOX2	ENST00000380749.5|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr11_-_94227029_94227074	0.0277424	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chrX_-_15683147_15683159	0.0276552	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr6_-_31620095_31620135	0.0276073	SOX3_SOX2	ENST00000424176.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456622.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr9_+_109694914_109694927	0.0275591	SOX3_SOX2	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr3_-_9005118_9005186	0.0275248	SOX3_SOX2	ENST00000264926.2|RAD18|ENSG00000070950.5|RAD18 homolog (S. cerevisiae)
hg19_v2_chr2_-_224903995_224904036	0.0274904	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr13_-_39611956_39611976	0.0274764	SOX3_SOX2	ENST00000418503.1|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr5_+_148521454_148521610	0.0274469	SOX3_SOX2	ENST00000508983.1|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3
hg19_v2_chr17_-_30668887_30668971	0.0274384	SOX3_SOX2	ENST00000581747.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000583334.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000580558.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr22_+_27053190_27053336	0.0274333	SOX3_SOX2	ENST00000439738.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000422403.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000436238.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000425476.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000455640.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000451141.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000452429.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000423278.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr5_-_137514617_137514686	0.0273498	SOX3_SOX2	ENST00000254900.5|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chrX_+_72062617_72062617	0.0273448	SOX3_SOX2	ENST00000440247.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr2_+_33683109_33683132	0.0273054	SOX3_SOX2	ENST00000437184.1|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr6_+_97372596_97372644	0.0272692	SOX3_SOX2	ENST00000369261.4|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr13_+_34392200_34392221	0.0272646	SOX3_SOX2	ENST00000434425.1|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr22_+_38864041_38864150	0.0272372	SOX3_SOX2	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr19_-_36304201_36304201	0.0272206	SOX3_SOX2	ENST00000301175.3|PRODH2|ENSG00000250799.5|proline dehydrogenase (oxidase) 2
hg19_v2_chrX_+_37545012_37545064	0.0271676	SOX3_SOX2	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr5_+_133707252_133707295	0.0271414	SOX3_SOX2	ENST00000506787.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B 	ENST00000507277.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr15_-_59500973_59500990	0.0271282	SOX3_SOX2	ENST00000560749.1|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr12_+_56477093_56477110	0.0270186	SOX3_SOX2	ENST00000549672.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000415288.2|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr2_-_233352531_233352550	0.0269966	SOX3_SOX2	ENST00000304546.1|ECEL1|ENSG00000171551.7|endothelin converting enzyme-like 1
hg19_v2_chr15_-_72521017_72521045	0.0269062	SOX3_SOX2	ENST00000561609.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr7_+_87563458_87563489	0.0268495	SOX3_SOX2	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr12_+_70760056_70760085	0.0267929	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr1_+_215256467_215256622	0.0267836	SOX3_SOX2	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr1_+_82165350_82165455	0.0267813	SOX3_SOX2	ENST00000359929.3|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr2_+_10183651_10183713	0.0267448	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chr4_-_187647773_187647876	0.0267378	SOX3_SOX2	ENST00000509647.1|FAT1|ENSG00000083857.9|FAT atypical cadherin 1
hg19_v2_chr12_+_133657461_133657529	0.0267232	SOX3_SOX2	ENST00000412146.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000544426.1|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440984.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000319849.3|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440550.2|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr1_-_224033596_224033697	0.0267054	SOX3_SOX2	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr1_+_93913665_93913705	0.0267007	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr15_+_64388166_64388225	0.0266616	SOX3_SOX2	ENST00000353874.4|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000261889.5|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000559844.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000561026.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000558040.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr20_+_55205825_55205938	0.0266146	SOX3_SOX2	ENST00000544508.1|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr1_+_79115503_79115530	0.026612	SOX3_SOX2	ENST00000370747.4|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000438486.1|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000545124.1|IFI44|ENSG00000137965.6|interferon-induced protein 44
hg19_v2_chr17_+_40985407_40985513	0.0265548	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr3_-_184095923_184095953	0.0265324	SOX3_SOX2	ENST00000445696.2|THPO|ENSG00000090534.13|thrombopoietin 	ENST00000204615.7|THPO|ENSG00000090534.13|thrombopoietin
hg19_v2_chr12_-_46662772_46662835	0.0264989	SOX3_SOX2	ENST00000549049.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000439706.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000398637.5|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr4_+_184580420_184580485	0.026498	SOX3_SOX2	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr1_+_10459433_10459689	0.026482	SOX3_SOX2	ENST00000465632.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000460189.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr7_-_148725733_148725759	0.0264726	SOX3_SOX2	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr10_-_125853200_125853208	0.0264509	SOX3_SOX2	ENST00000421115.1|CHST15|ENSG00000182022.13|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
hg19_v2_chr5_+_109025067_109025146	0.0264403	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr3_+_141106643_141106681	0.0264255	SOX3_SOX2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr14_-_65569057_65569119	0.0264242	SOX3_SOX2	ENST00000555419.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000341653.2|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr20_-_44176013_44176045	0.0264208	SOX3_SOX2	ENST00000555685.1|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor
hg19_v2_chr20_-_52645231_52645242	0.0264177	SOX3_SOX2	ENST00000448484.1|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1
hg19_v2_chr19_+_17420340_17420383	0.0263787	SOX3_SOX2	ENST00000359866.4|DDA1|ENSG00000130311.6|DET1 and DDB1 associated 1
hg19_v2_chr6_+_34857019_34857117	0.0263741	SOX3_SOX2	ENST00000360359.3|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A 	ENST00000535627.1|ANKS1A|ENSG00000064999.12|ankyrin repeat and sterile alpha motif domain containing 1A
hg19_v2_chr1_-_228603694_228603730	0.0263493	SOX3_SOX2	ENST00000366697.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr14_-_73925225_73925323	0.0263106	SOX3_SOX2	ENST00000356296.4|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000355058.3|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000359560.3|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000557597.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000554394.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555238.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000535282.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555987.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000555394.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila) 	ENST00000554546.1|NUMB|ENSG00000133961.15|numb homolog (Drosophila)
hg19_v2_chr12_+_51818749_51818901	0.0262518	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr1_-_212004090_212004168	0.0262227	SOX3_SOX2	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr10_+_82298088_82298088	0.0262072	SOX3_SOX2	ENST00000470604.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr12_-_96793844_96793855	0.0261457	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr6_+_83777374_83777456	0.0261202	SOX3_SOX2	ENST00000349129.2|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000237163.5|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000536812.1|DOPEY1|ENSG00000083097.10|dopey family member 1
hg19_v2_chr8_-_101965559_101965570	0.0260681	SOX3_SOX2	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr1_-_31712401_31712401	0.026023	SOX3_SOX2	ENST00000373736.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr12_-_122712038_122712081	0.0259812	SOX3_SOX2	ENST00000413918.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein 	ENST00000443649.3|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr8_+_67624653_67624752	0.0259269	SOX3_SOX2	ENST00000521198.2|SGK3|ENSG00000104205.8|serum/glucocorticoid regulated kinase family, member 3
hg19_v2_chr1_+_100111580_100111773	0.0259171	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr16_-_46865047_46865103	0.0258807	SOX3_SOX2	ENST00000394806.2|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr13_+_97874574_97874609	0.0258379	SOX3_SOX2	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr13_-_107187462_107187462	0.0258153	SOX3_SOX2	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr17_+_79031415_79031560	0.0257917	SOX3_SOX2	ENST00000572073.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2 	ENST00000573677.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2
hg19_v2_chr9_+_6413317_6413418	0.0257779	SOX3_SOX2	ENST00000276893.5|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 	ENST00000381373.3|UHRF2|ENSG00000147854.12|ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase
hg19_v2_chr19_-_39264072_39264132	0.0257618	SOX3_SOX2	ENST00000599035.1|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7 	ENST00000378626.4|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7
hg19_v2_chr4_+_113568207_113568367	0.0257472	SOX3_SOX2	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr5_-_159739483_159739515	0.0257311	SOX3_SOX2	ENST00000519673.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000541762.1|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr13_-_103451307_103451380	0.0257172	SOX3_SOX2	ENST00000376004.4|KDELC1|ENSG00000134901.8|KDEL (Lys-Asp-Glu-Leu) containing 1
hg19_v2_chr21_-_32931290_32931341	0.0256623	SOX3_SOX2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr5_+_72112418_72112456	0.0256581	SOX3_SOX2	ENST00000454282.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr2_+_201676908_201677120	0.0256336	SOX3_SOX2	ENST00000409226.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000452790.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr22_+_42372970_42372994	0.0255811	SOX3_SOX2	ENST00000291236.11|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr7_-_50628745_50628778	0.025541	SOX3_SOX2	ENST00000380984.4|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000357936.5|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase) 	ENST00000426377.1|DDC|ENSG00000132437.13|dopa decarboxylase (aromatic L-amino acid decarboxylase)
hg19_v2_chr17_+_57642886_57643006	0.0255312	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr10_-_27530997_27531065	0.0254859	SOX3_SOX2	ENST00000375901.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000412279.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000375905.4|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr6_-_165989936_165989936	0.0254829	SOX3_SOX2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr5_+_72112470_72112533	0.0253856	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr11_-_62689046_62689279	0.0253427	SOX3_SOX2	ENST00000306960.3|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1 	ENST00000543973.1|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1
hg19_v2_chrX_-_128657457_128657477	0.0253376	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr1_-_156722195_156722246	0.025303	SOX3_SOX2	ENST00000368206.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr17_+_75452447_75452460	0.0252695	SOX3_SOX2	ENST00000591472.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr19_-_15442701_15442739	0.0252414	SOX3_SOX2	ENST00000594841.1|BRD4|ENSG00000141867.13|bromodomain containing 4 	ENST00000601941.1|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr9_-_115774453_115774507	0.0252146	SOX3_SOX2	ENST00000427548.1|ZNF883|ENSG00000228623.2|zinc finger protein 883
hg19_v2_chr8_-_101965146_101965236	0.0252125	SOX3_SOX2	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr17_+_63133587_63133627	0.0251787	SOX3_SOX2	ENST00000449996.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9 	ENST00000262406.9|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr4_+_144257915_144258009	0.0250842	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr10_+_1120312_1120338	0.0250678	SOX3_SOX2	ENST00000436154.1|WDR37|ENSG00000047056.10|WD repeat domain 37
hg19_v2_chr13_-_38443860_38443939	0.025052	SOX3_SOX2	ENST00000426868.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379681.3|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000338947.5|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000355779.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000358477.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379673.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4
hg19_v2_chrX_-_77041685_77041716	0.0249447	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr7_-_8302298_8302323	0.024929	SOX3_SOX2	ENST00000446305.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr4_-_47465666_47465736	0.0249217	SOX3_SOX2	ENST00000381571.4|COMMD8|ENSG00000169019.9|COMM domain containing 8
hg19_v2_chr12_+_69080734_69080808	0.0249142	SOX3_SOX2	ENST00000378905.2|NUP107|ENSG00000111581.5|nucleoporin 107kDa
hg19_v2_chr3_+_183415558_183415649	0.0248636	SOX3_SOX2	ENST00000305135.5|YEATS2|ENSG00000163872.11|YEATS domain containing 2
hg19_v2_chr15_-_60771128_60771277	0.024855	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr1_-_211666259_211666259	0.024803	SOX3_SOX2	ENST00000367002.4|RD3|ENSG00000198570.5|retinal degeneration 3
hg19_v2_chr5_+_178977546_178977571	0.0247854	SOX3_SOX2	ENST00000319449.4|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1 	ENST00000377001.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1
hg19_v2_chr9_-_117150243_117150271	0.0247773	SOX3_SOX2	ENST00000374088.3|AKNA|ENSG00000106948.12|AT-hook transcription factor
hg19_v2_chr5_-_111092930_111092955	0.0247768	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr12_+_1099675_1099751	0.0247518	SOX3_SOX2	ENST00000545318.2|ERC1|ENSG00000082805.15|ELKS/RAB6-interacting/CAST family member 1
hg19_v2_chr10_-_25241499_25241541	0.0247453	SOX3_SOX2	ENST00000376378.1|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000376376.3|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000320152.6|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1
hg19_v2_chr11_+_111807863_111807937	0.0247356	SOX3_SOX2	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr10_+_123923205_123923359	0.0247298	SOX3_SOX2	ENST00000369004.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2 	ENST00000260733.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr11_+_1889880_1889903	0.0247166	SOX3_SOX2	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr1_-_20755140_20755275	0.024715	SOX3_SOX2	ENST00000418743.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141 	ENST00000426428.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141
hg19_v2_chr10_-_13390021_13390040	0.0246836	SOX3_SOX2	ENST00000537130.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr2_+_210443993_210444094	0.024655	SOX3_SOX2	ENST00000392193.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr19_-_20844368_20844407	0.0245987	SOX3_SOX2	ENST00000595094.1|CTC-513N18.7|ENSG00000269110.1|CTC-513N18.7	ENST00000601440.1|ZNF626|ENSG00000188171.10|zinc finger protein 626 	ENST00000291750.6|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr20_+_6748311_6748352	0.0245961	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr10_-_13544945_13544976	0.0245788	SOX3_SOX2	ENST00000378605.3|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000341083.3|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr5_-_89825328_89825422	0.0245387	SOX3_SOX2	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr18_-_74844727_74844800	0.024488	SOX3_SOX2	ENST00000355994.2|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000579129.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr5_+_74062806_74062840	0.0244326	SOX3_SOX2	ENST00000296802.5|NSA2|ENSG00000164346.5|NSA2 ribosome biogenesis homolog (S. cerevisiae)
hg19_v2_chr1_-_193075180_193075244	0.0243848	SOX3_SOX2	ENST00000367440.3|GLRX2|ENSG00000023572.4|glutaredoxin 2
hg19_v2_chrX_+_101470280_101470280	0.0243476	SOX3_SOX2	ENST00000395088.2|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000330252.5|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000333110.5|TCP11X1|ENSG00000215046.4|t-complex 11 family, X-linked 1
hg19_v2_chr14_-_23652849_23652883	0.0243386	SOX3_SOX2	ENST00000316902.7|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8 	ENST00000469263.1|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8 	ENST00000525062.1|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8 	ENST00000524758.1|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8
hg19_v2_chr6_+_84569359_84569445	0.0242572	SOX3_SOX2	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr20_-_36889127_36889174	0.0242031	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr3_+_9773409_9773479	0.0241661	SOX3_SOX2	ENST00000433861.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000424362.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000383829.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000302054.3|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000420291.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1
hg19_v2_chr7_+_106810165_106810374	0.0241547	SOX3_SOX2	ENST00000468401.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000497535.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000485846.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr13_-_36920420_36920574	0.024153	SOX3_SOX2	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr4_-_144940477_144940541	0.0240772	SOX3_SOX2	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr14_-_35099315_35099369	0.0240507	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr10_-_25012115_25012174	0.0240012	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr22_-_32341336_32341336	0.0239824	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr7_+_26191809_26191890	0.0239808	SOX3_SOX2	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr3_-_149688655_149688737	0.023957	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr2_+_202098166_202098202	0.0239486	SOX3_SOX2	ENST00000392263.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264274.9|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392259.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392266.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000432109.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264275.5|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr16_+_70207686_70208060	0.0239229	SOX3_SOX2	ENST00000541793.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000314151.8|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000565806.1|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000569347.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000536907.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C
hg19_v2_chr9_-_74525658_74525658	0.0239208	SOX3_SOX2	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr3_-_165555200_165555260	0.0239159	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr1_-_155880672_155880715	0.0239081	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr6_+_112375462_112375536	0.0238839	SOX3_SOX2	ENST00000361714.1|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3
hg19_v2_chr3_+_160473996_160474033	0.0238734	SOX3_SOX2	ENST00000498165.1|PPM1L|ENSG00000163590.9|protein phosphatase, Mg2+/Mn2+ dependent, 1L
hg19_v2_chr12_+_120907622_120907696	0.0238705	SOX3_SOX2	ENST00000392509.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549649.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548342.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr8_-_27469196_27469294	0.0238375	SOX3_SOX2	ENST00000546343.1|CLU|ENSG00000120885.15|clusterin 	ENST00000560566.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr1_+_54703710_54703710	0.0238354	SOX3_SOX2	ENST00000361350.4|SSBP3-AS1|ENSG00000198711.4|SSBP3 antisense RNA 1
hg19_v2_chr22_+_21128167_21128167	0.0238147	SOX3_SOX2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr7_+_87257854_87257931	0.023801	SOX3_SOX2	ENST00000394654.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr13_-_39612176_39612258	0.0238006	SOX3_SOX2	ENST00000352251.3|PROSER1|ENSG00000120685.15|proline and serine rich 1 	ENST00000350125.3|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr19_+_50180507_50180551	0.0237306	SOX3_SOX2	ENST00000454376.2|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1 	ENST00000524771.1|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chr12_+_113344582_113344745	0.023718	SOX3_SOX2	ENST00000202917.5|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000445409.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000452357.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr3_-_69370095_69370115	0.0237038	SOX3_SOX2	ENST00000473029.1|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr12_-_6772249_6772297	0.02367	SOX3_SOX2	ENST00000467678.1|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000493873.1|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000423703.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000412586.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000444704.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr13_+_76362974_76363015	0.0236226	SOX3_SOX2	ENST00000497947.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr12_-_15942503_15942514	0.0236067	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr12_+_85673868_85673885	0.0235902	SOX3_SOX2	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr9_+_140032842_140032842	0.0235878	SOX3_SOX2	ENST00000371561.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1 	ENST00000315048.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1
hg19_v2_chr15_+_41709302_41709348	0.0235493	SOX3_SOX2	ENST00000389629.4|RTF1|ENSG00000137815.10|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr10_+_24498060_24498102	0.0235253	SOX3_SOX2	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr1_+_100111479_100111499	0.0235238	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr17_+_63133526_63133566	0.0235059	SOX3_SOX2	ENST00000443584.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr3_+_179280668_179280769	0.0234859	SOX3_SOX2	ENST00000429709.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000450518.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000392662.1|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000490364.1|ACTL6A|ENSG00000136518.12|actin-like 6A
hg19_v2_chr9_+_19408999_19409057	0.0234853	SOX3_SOX2	ENST00000340967.2|ACER2|ENSG00000177076.4|alkaline ceramidase 2
hg19_v2_chr16_+_2880254_2880278	0.0234601	SOX3_SOX2	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr12_+_45686457_45686482	0.023445	SOX3_SOX2	ENST00000441606.2|ANO6|ENSG00000177119.11|anoctamin 6
hg19_v2_chr7_+_6144514_6144614	0.0234408	SOX3_SOX2	ENST00000306177.5|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42 	ENST00000465073.2|USP42|ENSG00000106346.7|ubiquitin specific peptidase 42
hg19_v2_chr8_-_101964832_101964852	0.0234398	SOX3_SOX2	ENST00000523131.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000418997.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr1_+_228870824_228870910	0.0234041	SOX3_SOX2	ENST00000366691.3|RHOU|ENSG00000116574.4|ras homolog family member U
hg19_v2_chr13_-_31039375_31039379	0.0233956	SOX3_SOX2	ENST00000399494.1|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr10_-_46167722_46167926	0.0233775	SOX3_SOX2	ENST00000374366.3|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4 	ENST00000344646.5|ZFAND4|ENSG00000172671.15|zinc finger, AN1-type domain 4
hg19_v2_chr15_+_59665194_59665232	0.0233688	SOX3_SOX2	ENST00000560394.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr17_+_4613776_4613792	0.0233646	SOX3_SOX2	ENST00000269260.2|ARRB2|ENSG00000141480.13|arrestin, beta 2
hg19_v2_chr4_-_74088800_74088844	0.0233615	SOX3_SOX2	ENST00000509867.2|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr21_-_34144157_34144175	0.0233593	SOX3_SOX2	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr19_-_9695169_9695188	0.023303	SOX3_SOX2	ENST00000586602.1|ZNF121|ENSG00000197961.7|zinc finger protein 121
hg19_v2_chr1_-_114301503_114301576	0.0232975	SOX3_SOX2	ENST00000447664.2|PHTF1|ENSG00000116793.11|putative homeodomain transcription factor 1
hg19_v2_chr19_+_52298399_52298445	0.0232786	SOX3_SOX2	ENST00000339223.4|FPR3|ENSG00000187474.4|formyl peptide receptor 3
hg19_v2_chr4_-_100009856_100009902	0.0232479	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr10_+_47894572_47894572	0.0232466	SOX3_SOX2	ENST00000355876.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr12_+_109577202_109577289	0.0232394	SOX3_SOX2	ENST00000377848.3|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta 	ENST00000377854.5|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta
hg19_v2_chr7_+_129015671_129015685	0.0231873	SOX3_SOX2	ENST00000466993.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr5_-_150521192_150521229	0.0231061	SOX3_SOX2	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chr10_+_76585303_76585354	0.0231041	SOX3_SOX2	ENST00000372725.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B
hg19_v2_chr13_-_60737898_60737910	0.0230995	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chrX_-_101726732_101726732	0.0230586	SOX3_SOX2	ENST00000457521.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000412230.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000453326.2|TCP11X2|ENSG00000215029.4|t-complex 11 family, X-linked 2
hg19_v2_chr2_-_61765732_61765761	0.0230394	SOX3_SOX2	ENST00000443240.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000436018.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr6_+_126240442_126240459	0.0229771	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr18_+_7946941_7946952	0.0229673	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr6_+_97372734_97372760	0.0228969	SOX3_SOX2	ENST00000539200.1|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr12_-_93835665_93835750	0.022896	SOX3_SOX2	ENST00000552442.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N 	ENST00000550657.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr7_+_111846643_111846704	0.0228959	SOX3_SOX2	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr19_+_532049_532065	0.0228754	SOX3_SOX2	ENST00000606136.1|CDC34|ENSG00000099804.4|cell division cycle 34
hg19_v2_chr5_+_110427983_110428087	0.0228501	SOX3_SOX2	ENST00000513710.2|WDR36|ENSG00000134987.7|WD repeat domain 36 	ENST00000505303.1|WDR36|ENSG00000134987.7|WD repeat domain 36
hg19_v2_chr4_-_174256276_174256303	0.0228489	SOX3_SOX2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr1_+_201708992_201709011	0.0228464	SOX3_SOX2	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr2_-_238499131_238499206	0.0228384	SOX3_SOX2	ENST00000538644.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr7_-_30009542_30009562	0.0227909	SOX3_SOX2	ENST00000438497.1|SCRN1|ENSG00000136193.12|secernin 1
hg19_v2_chr15_+_74908228_74908247	0.0227853	SOX3_SOX2	ENST00000566126.1|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chr3_-_49459878_49459912	0.0227602	SOX3_SOX2	ENST00000546031.1|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000458307.2|AMT|ENSG00000145020.10|aminomethyltransferase 	ENST00000430521.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr1_-_35658736_35658754	0.0227481	SOX3_SOX2	ENST00000357214.5|SFPQ|ENSG00000116560.6|splicing factor proline/glutamine-rich
hg19_v2_chr21_+_38445539_38445596	0.0227249	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr7_-_23571586_23571660	0.0227007	SOX3_SOX2	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chrX_+_140968348_140968348	0.0226778	SOX3_SOX2	ENST00000536088.1|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3 	ENST00000443323.2|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3
hg19_v2_chr9_+_36036430_36036430	0.0226684	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr7_+_87257701_87257770	0.0225617	SOX3_SOX2	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr4_+_146402997_146403023	0.0225522	SOX3_SOX2	ENST00000512019.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr14_-_21516590_21516692	0.0225352	SOX3_SOX2	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr22_-_39052300_39052336	0.022478	SOX3_SOX2	ENST00000355830.6|FAM227A|ENSG00000184949.11|family with sequence similarity 227, member A
hg19_v2_chr12_-_95009837_95009854	0.0224512	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr8_-_102218292_102218421	0.0224508	SOX3_SOX2	ENST00000518336.1|ZNF706|ENSG00000120963.7|zinc finger protein 706 	ENST00000520454.1|ZNF706|ENSG00000120963.7|zinc finger protein 706
hg19_v2_chr16_+_29818857_29819023	0.0224423	SOX3_SOX2	ENST00000567444.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chrX_-_72434628_72434722	0.0224181	SOX3_SOX2	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr10_-_91174215_91174314	0.0223909	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chr4_+_159727222_159727266	0.0223904	SOX3_SOX2	ENST00000512986.1|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr2_+_192109911_192110170	0.0223752	SOX3_SOX2	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr6_-_112194484_112194662	0.0223679	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr14_+_96968707_96968788	0.0223558	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr3_-_141747459_141747507	0.0223473	SOX3_SOX2	ENST00000477292.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000478006.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000495310.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000486111.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr9_-_130639997_130640022	0.0223429	SOX3_SOX2	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr5_+_139175380_139175431	0.02233	SOX3_SOX2	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr14_+_32546145_32546239	0.022329	SOX3_SOX2	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr15_-_82338460_82338496	0.0223211	SOX3_SOX2	ENST00000558133.1|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B 	ENST00000329713.4|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B
hg19_v2_chr6_-_2962331_2962391	0.0223101	SOX3_SOX2	ENST00000380524.1|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr6_-_86352642_86352709	0.0223101	SOX3_SOX2	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr10_-_105845674_105845760	0.0222741	SOX3_SOX2	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr7_-_37382683_37382783	0.0221618	SOX3_SOX2	ENST00000455879.1|ELMO1|ENSG00000155849.11|engulfment and cell motility 1
hg19_v2_chr3_-_88108192_88108203	0.0221555	SOX3_SOX2	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr6_-_151712673_151712709	0.0221547	SOX3_SOX2	ENST00000325144.4|ZBTB2|ENSG00000181472.4|zinc finger and BTB domain containing 2
hg19_v2_chr17_+_31254892_31254955	0.0221517	SOX3_SOX2	ENST00000394642.3|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000579849.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr7_-_22234381_22234430	0.0221408	SOX3_SOX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr21_-_27107881_27107984	0.0220988	SOX3_SOX2	ENST00000400090.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400087.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400093.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr7_+_129015484_129015519	0.0220584	SOX3_SOX2	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr1_-_53019059_53019176	0.0220564	SOX3_SOX2	ENST00000484723.2|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000524582.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr8_+_99076509_99076539	0.0220196	SOX3_SOX2	ENST00000318528.3|C8orf47|ENSG00000177459.6|chromosome 8 open reading frame 47
hg19_v2_chr6_+_87865262_87865339	0.0219783	SOX3_SOX2	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr7_-_111846435_111846471	0.0219578	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr8_+_67405755_67405789	0.0219073	SOX3_SOX2	ENST00000521495.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr17_+_25621102_25621157	0.0219057	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr6_+_28109703_28109716	0.0218568	SOX3_SOX2	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chrX_-_154376044_154376055	0.0218535	SOX3_SOX2	ENST00000362018.2|MTCP1|ENSG00000214827.5|mature T-cell proliferation 1
hg19_v2_chr6_-_84937314_84937372	0.0218434	SOX3_SOX2	ENST00000257766.4|KIAA1009|ENSG00000135315.7|KIAA1009 	ENST00000403245.3|KIAA1009|ENSG00000135315.7|KIAA1009
hg19_v2_chr12_-_114211474_114211499	0.0217698	SOX3_SOX2	ENST00000550905.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000547963.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr22_+_19419425_19419425	0.0217647	SOX3_SOX2	ENST00000333130.3|MRPL40|ENSG00000185608.4|mitochondrial ribosomal protein L40
hg19_v2_chrX_+_155227246_155227335	0.0217539	SOX3_SOX2	ENST00000244174.5|IL9R|ENSG00000124334.12|interleukin 9 receptor 	ENST00000424344.3|IL9R|ENSG00000124334.12|interleukin 9 receptor
hg19_v2_chr7_+_26438187_26438351	0.0217533	SOX3_SOX2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr1_+_10459111_10459175	0.0217479	SOX3_SOX2	ENST00000541529.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000270776.8|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000483936.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000538557.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr7_-_99774945_99775026	0.0217399	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr15_-_65398647_65398697	0.0216995	SOX3_SOX2	ENST00000502113.2|UBAP1L|ENSG00000246922.4|ubiquitin associated protein 1-like
hg19_v2_chr1_+_164528866_164528877	0.0216935	SOX3_SOX2	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr2_+_183580954_183581049	0.0216871	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr3_-_71294304_71294332	0.021609	SOX3_SOX2	ENST00000498215.1|FOXP1|ENSG00000114861.14|forkhead box P1
hg19_v2_chr2_+_33172012_33172039	0.0215698	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr15_+_93443419_93443580	0.0215481	SOX3_SOX2	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr1_-_153538292_153538342	0.0215317	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr1_-_156023580_156023605	0.0215244	SOX3_SOX2	ENST00000368309.3|UBQLN4|ENSG00000160803.7|ubiquilin 4
hg19_v2_chr3_-_56950407_56950499	0.0215022	SOX3_SOX2	ENST00000496106.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr1_-_145827015_145827103	0.0215015	SOX3_SOX2	ENST00000534502.1|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000313835.9|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000454423.3|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A
hg19_v2_chr1_-_53793725_53793789	0.0214962	SOX3_SOX2	ENST00000371454.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr13_-_99404875_99404942	0.0214474	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chr19_+_17326191_17326215	0.0214245	SOX3_SOX2	ENST00000595101.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000596136.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000379776.4|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr21_-_27945562_27945618	0.0214126	SOX3_SOX2	ENST00000299340.4|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1 	ENST00000435845.2|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1
hg19_v2_chr11_+_64058820_64058881	0.0214068	SOX3_SOX2	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr3_-_52719546_52719636	0.0213712	SOX3_SOX2	ENST00000439181.1|PBRM1|ENSG00000163939.14|polybromo 1 	ENST00000449505.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr16_-_29275800_29275939	0.0213672	SOX3_SOX2	ENST00000567984.1|RP11-426C22.6|ENSG00000260953.1|RP11-426C22.6
hg19_v2_chr14_+_21467414_21467463	0.0213548	SOX3_SOX2	ENST00000554422.1|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2 	ENST00000298681.4|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2
hg19_v2_chr2_+_210444298_210444343	0.0213435	SOX3_SOX2	ENST00000445941.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr12_-_76462713_76462773	0.0212943	SOX3_SOX2	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr19_+_50194360_50194410	0.0212296	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chrX_-_139866723_139866723	0.021197	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr12_+_133614119_133614166	0.0211656	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr7_-_135433460_135433499	0.0211317	SOX3_SOX2	ENST00000415751.1|FAM180A|ENSG00000189320.4|family with sequence similarity 180, member A
hg19_v2_chr10_-_128975273_128975273	0.0211069	SOX3_SOX2	ENST00000424811.2|FAM196A|ENSG00000188916.4|family with sequence similarity 196, member A
hg19_v2_chr1_-_78149041_78149142	0.0210946	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr11_-_130184555_130184581	0.0210815	SOX3_SOX2	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr18_+_32558208_32558340	0.0210795	SOX3_SOX2	ENST00000436190.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr3_+_130612803_130612877	0.0210379	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr11_-_13461790_13461826	0.0210201	SOX3_SOX2	ENST00000530907.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr16_+_21610797_21610850	0.0209584	SOX3_SOX2	ENST00000358154.3|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr4_-_88141755_88141791	0.0209509	SOX3_SOX2	ENST00000273963.5|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr9_+_112810878_112810985	0.0209488	SOX3_SOX2	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr14_+_77924373_77924451	0.0209141	SOX3_SOX2	ENST00000216479.3|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 	ENST00000535854.2|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 	ENST00000555517.1|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
hg19_v2_chr9_-_115818951_115819011	0.0208824	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr1_-_145589424_145589471	0.0208679	SOX3_SOX2	ENST00000334513.5|NUDT17|ENSG00000186364.7|nudix (nucleoside diphosphate linked moiety X)-type motif 17
hg19_v2_chr14_-_69619823_69619879	0.0208636	SOX3_SOX2	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr3_-_45267760_45267826	0.0208057	SOX3_SOX2	ENST00000503771.1|TMEM158|ENSG00000249992.1|transmembrane protein 158 (gene/pseudogene)
hg19_v2_chr13_-_111567353_111567432	0.0207838	SOX3_SOX2	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chr17_+_8339189_8339285	0.0207496	SOX3_SOX2	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr1_+_32739733_32739746	0.020704	SOX3_SOX2	ENST00000333070.4|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase
hg19_v2_chr10_+_23216944_23217002	0.0207003	SOX3_SOX2	ENST00000298032.5|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000409983.3|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000409049.3|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr4_-_88141615_88141751	0.0206829	SOX3_SOX2	ENST00000545252.1|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000425278.2|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000498875.2|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr1_-_156828810_156828914	0.0206643	SOX3_SOX2	ENST00000368195.3|INSRR|ENSG00000027644.4|insulin receptor-related receptor
hg19_v2_chrX_-_10645724_10645735	0.0205822	SOX3_SOX2	ENST00000413894.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr12_+_133656995_133657060	0.0205658	SOX3_SOX2	ENST00000356456.5|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr13_-_46189874_46189874	0.0205635	SOX3_SOX2	ENST00000298738.2|FAM194B|ENSG00000165837.7|family with sequence similarity 194, member B
hg19_v2_chr9_+_127023704_127023756	0.0205333	SOX3_SOX2	ENST00000373596.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6 	ENST00000425237.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6
hg19_v2_chr1_+_200842083_200842116	0.0205153	SOX3_SOX2	ENST00000304244.2|GPR25|ENSG00000170128.2|G protein-coupled receptor 25
hg19_v2_chr2_+_203241531_203241659	0.0205018	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr4_-_103266626_103266647	0.0204863	SOX3_SOX2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr5_-_150284351_150284443	0.0204764	SOX3_SOX2	ENST00000427179.1|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr16_+_58498194_58498236	0.0203947	SOX3_SOX2	ENST00000561779.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000565430.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000567063.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000566041.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr12_-_12491608_12491640	0.0203729	SOX3_SOX2	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr3_-_69101413_69101457	0.0202979	SOX3_SOX2	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr10_-_62704005_62704045	0.0202641	SOX3_SOX2	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr4_-_129491686_129491703	0.0202478	SOX3_SOX2	ENST00000514265.1|RP11-184M15.1|ENSG00000248187.1|RP11-184M15.1
hg19_v2_chr17_-_73781567_73781629	0.0202383	SOX3_SOX2	ENST00000586607.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr6_+_149068464_149068559	0.0202312	SOX3_SOX2	ENST00000367463.4|UST|ENSG00000111962.7|uronyl-2-sulfotransferase
hg19_v2_chr12_-_108154925_108154945	0.0202014	SOX3_SOX2	ENST00000228437.5|PRDM4|ENSG00000110851.7|PR domain containing 4
hg19_v2_chr6_+_90192974_90193122	0.0201872	SOX3_SOX2	ENST00000520458.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr2_+_30370382_30370421	0.0201791	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr4_+_141178440_141178472	0.0200743	SOX3_SOX2	ENST00000394205.3|SCOC|ENSG00000153130.13|short coiled-coil protein
hg19_v2_chr5_+_134094461_134094494	0.0200736	SOX3_SOX2	ENST00000452510.2|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENST00000354283.4|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
hg19_v2_chr14_-_31676674_31676707	0.020071	SOX3_SOX2	ENST00000399332.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1 	ENST00000556224.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr17_-_39677971_39678038	0.0200695	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr2_+_208576355_208576475	0.020016	SOX3_SOX2	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr15_+_33603147_33603187	0.0199692	SOX3_SOX2	ENST00000415757.3|RYR3|ENSG00000198838.7|ryanodine receptor 3 	ENST00000389232.4|RYR3|ENSG00000198838.7|ryanodine receptor 3
hg19_v2_chr4_+_141445311_141445332	0.0199484	SOX3_SOX2	ENST00000323570.3|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2 	ENST00000511887.2|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chrX_-_73834449_73834481	0.01994	SOX3_SOX2	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr8_-_41754231_41754281	0.0199156	SOX3_SOX2	ENST00000265709.8|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr1_-_21503337_21503407	0.0198893	SOX3_SOX2	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr19_-_36705547_36705597	0.0198066	SOX3_SOX2	ENST00000304116.5|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr2_-_161349909_161350043	0.0198039	SOX3_SOX2	ENST00000392753.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr10_-_70231639_70231879	0.0197844	SOX3_SOX2	ENST00000551118.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000358410.3|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399180.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399179.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2
hg19_v2_chr3_+_46618727_46618745	0.0197422	SOX3_SOX2	ENST00000296145.5|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr4_+_62067860_62067900	0.0197006	SOX3_SOX2	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr2_-_188430478_188430496	0.0196811	SOX3_SOX2	ENST00000421427.1|TFPI|ENSG00000003436.10|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
hg19_v2_chr7_-_75988321_75988348	0.0196476	SOX3_SOX2	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr19_-_5903714_5903809	0.0195909	SOX3_SOX2	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr8_-_110346614_110346722	0.0195011	SOX3_SOX2	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr8_+_98656336_98656535	0.0194842	SOX3_SOX2	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr17_-_26926005_26926070	0.019432	SOX3_SOX2	ENST00000536674.2|SPAG5|ENSG00000076382.12|sperm associated antigen 5
hg19_v2_chr6_-_134639180_134639220	0.0194192	SOX3_SOX2	ENST00000367858.5|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr14_-_71276211_71276255	0.0193658	SOX3_SOX2	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr14_-_69619689_69619757	0.0193151	SOX3_SOX2	ENST00000389997.6|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000557386.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000554681.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr3_-_64009658_64009687	0.0193082	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr4_+_71570430_71570536	0.0192685	SOX3_SOX2	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr20_-_4804244_4804293	0.0192251	SOX3_SOX2	ENST00000379400.3|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr7_-_5821225_5821312	0.0191372	SOX3_SOX2	ENST00000416985.1|RNF216|ENSG00000011275.14|ring finger protein 216
hg19_v2_chr8_+_94929969_94929980	0.0190927	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chrX_+_84498989_84499003	0.0190443	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr12_-_45307711_45307922	0.0190432	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr12_+_75728419_75728476	0.019028	SOX3_SOX2	ENST00000378695.4|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1 	ENST00000312442.2|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1
hg19_v2_chr2_+_66662690_66662711	0.0189835	SOX3_SOX2	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr19_+_52772832_52772861	0.01898	SOX3_SOX2	ENST00000593703.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000601711.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000599581.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr15_+_85923797_85923844	0.0189527	SOX3_SOX2	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr17_+_4487294_4487307	0.0189399	SOX3_SOX2	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr5_+_102595119_102595142	0.0189266	SOX3_SOX2	ENST00000510890.1|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr17_+_37617721_37617773	0.018921	SOX3_SOX2	ENST00000584632.1|CDK12|ENSG00000167258.9|cyclin-dependent kinase 12
hg19_v2_chr12_-_52845910_52845938	0.0189003	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr2_+_54684327_54684399	0.0188992	SOX3_SOX2	ENST00000389980.3|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr7_-_150924121_150924332	0.0188867	SOX3_SOX2	ENST00000441774.1|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000222388.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000287844.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2
hg19_v2_chr14_+_102414651_102414721	0.0188233	SOX3_SOX2	ENST00000607414.1|RP11-1017G21.5|ENSG00000271780.1|RP11-1017G21.5
hg19_v2_chr6_+_22146851_22146883	0.0187124	SOX3_SOX2	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr3_-_33700933_33701085	0.0186866	SOX3_SOX2	ENST00000480013.1|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr1_-_204436344_204436474	0.0186742	SOX3_SOX2	ENST00000367184.2|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr15_+_84116106_84116283	0.018674	SOX3_SOX2	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr19_-_48673552_48673578	0.0186426	SOX3_SOX2	ENST00000536218.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent 	ENST00000596549.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr1_-_28520447_28520453	0.0186025	SOX3_SOX2	ENST00000539896.1|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr4_+_159727272_159727400	0.0185975	SOX3_SOX2	ENST00000379346.3|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr6_+_56911336_56911347	0.0185597	SOX3_SOX2	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr15_-_43398274_43398318	0.0185556	SOX3_SOX2	ENST00000382177.2|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1 	ENST00000290650.4|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1
hg19_v2_chr9_-_136857403_136857461	0.0185205	SOX3_SOX2	ENST00000406606.3|VAV2|ENSG00000160293.12|vav 2 guanine nucleotide exchange factor 	ENST00000371850.3|VAV2|ENSG00000160293.12|vav 2 guanine nucleotide exchange factor
hg19_v2_chr9_-_36400857_36400902	0.0184457	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr16_+_4545853_4545864	0.0184184	SOX3_SOX2	ENST00000575129.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000398595.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000414777.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr1_-_116383738_116383752	0.0184037	SOX3_SOX2	ENST00000320238.3|NHLH2|ENSG00000177551.5|nescient helix loop helix 2
hg19_v2_chr3_+_112930373_112930384	0.0182992	SOX3_SOX2	ENST00000498710.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr11_-_105892937_105893130	0.01828	SOX3_SOX2	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr1_-_6545502_6545548	0.0182612	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr14_+_58797974_58798011	0.018218	SOX3_SOX2	ENST00000417477.2|ARID4A|ENSG00000032219.14|AT rich interactive domain 4A (RBP1-like)
hg19_v2_chr19_-_5293243_5293282	0.0182024	SOX3_SOX2	ENST00000591760.1|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr15_+_84115868_84115980	0.0181756	SOX3_SOX2	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr19_-_46706186_46706343	0.0181545	SOX3_SOX2	ENST00000601263.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000598754.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000594027.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000598518.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000599817.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000595673.1|AC006262.5|ENSG00000268621.1|AC006262.5
hg19_v2_chr2_+_11679963_11679986	0.0181544	SOX3_SOX2	ENST00000263834.5|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1
hg19_v2_chr13_-_31040060_31040102	0.0181126	SOX3_SOX2	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr12_-_54694807_54694905	0.0181033	SOX3_SOX2	ENST00000435572.2|NFE2|ENSG00000123405.9|nuclear factor, erythroid 2
hg19_v2_chr10_+_69644404_69644427	0.0180521	SOX3_SOX2	ENST00000212015.6|SIRT1|ENSG00000096717.7|sirtuin 1
hg19_v2_chr17_-_62308087_62308116	0.018046	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr7_+_99613212_99613236	0.0180212	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr10_+_11207088_11207103	0.018003	SOX3_SOX2	ENST00000608830.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr21_+_44589118_44589151	0.0179835	SOX3_SOX2	ENST00000291554.2|CRYAA|ENSG00000160202.3|crystallin, alpha A
hg19_v2_chr16_+_15528332_15528385	0.0179813	SOX3_SOX2	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr14_-_24553834_24553850	0.0179385	SOX3_SOX2	ENST00000397002.2|NRL|ENSG00000129535.8|neural retina leucine zipper
hg19_v2_chr1_+_64239657_64239724	0.0179308	SOX3_SOX2	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr2_-_188312971_188312987	0.0178811	SOX3_SOX2	ENST00000410068.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000447403.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like 	ENST00000410102.1|CALCRL|ENSG00000064989.8|calcitonin receptor-like
hg19_v2_chr8_-_95449155_95449188	0.0177591	SOX3_SOX2	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr3_-_8686479_8686486	0.0177142	SOX3_SOX2	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr9_+_115249100_115249358	0.0176706	SOX3_SOX2	ENST00000337530.6|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000374244.3|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000536272.1|KIAA1958|ENSG00000165185.10|KIAA1958
hg19_v2_chr12_-_12419703_12419811	0.0176436	SOX3_SOX2	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr15_+_93447675_93447703	0.017597	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr10_+_47894023_47894023	0.0175384	SOX3_SOX2	ENST00000358474.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr1_+_178482212_178482255	0.0175277	SOX3_SOX2	ENST00000319416.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000258298.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367643.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367642.3|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr1_+_66458072_66458109	0.0175238	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr7_-_6388537_6388611	0.0174128	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr11_+_63754294_63754323	0.0173755	SOX3_SOX2	ENST00000543988.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr2_+_30455016_30455055	0.0173291	SOX3_SOX2	ENST00000401506.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000407930.2|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr9_-_130517522_130517583	0.0173256	SOX3_SOX2	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr9_-_126030817_126030906	0.0172996	SOX3_SOX2	ENST00000348403.5|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000447404.2|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000360998.3|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein
hg19_v2_chr14_+_32546274_32546295	0.017285	SOX3_SOX2	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr17_+_33914460_33914536	0.0172056	SOX3_SOX2	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr1_-_113247543_113247770	0.0172048	SOX3_SOX2	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chr16_+_67063262_67063364	0.0171917	SOX3_SOX2	ENST00000565389.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr13_+_26828275_26828312	0.0171784	SOX3_SOX2	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr6_-_128222103_128222226	0.0171754	SOX3_SOX2	ENST00000434358.1|THEMIS|ENSG00000172673.6|thymocyte selection associated 	ENST00000543064.1|THEMIS|ENSG00000172673.6|thymocyte selection associated 	ENST00000368248.2|THEMIS|ENSG00000172673.6|thymocyte selection associated
hg19_v2_chr4_-_140477353_140477400	0.0171655	SOX3_SOX2	ENST00000406354.1|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7 	ENST00000506866.2|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7
hg19_v2_chr20_+_49126881_49126936	0.0171626	SOX3_SOX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr14_-_88459182_88459236	0.0171352	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr16_-_3068171_3068191	0.0171286	SOX3_SOX2	ENST00000572154.1|CLDN6|ENSG00000184697.6|claudin 6 	ENST00000328796.4|CLDN6|ENSG00000184697.6|claudin 6
hg19_v2_chr9_-_103115185_103115235	0.0169258	SOX3_SOX2	ENST00000374902.4|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr9_+_2622085_2622174	0.0169218	SOX3_SOX2	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr12_-_71003568_71003629	0.0168813	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr6_-_167040731_167040745	0.0168757	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr4_-_164534657_164534701	0.0168512	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr3_-_171489085_171489158	0.0168136	SOX3_SOX2	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr12_+_22778116_22778139	0.0167619	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr19_-_36705763_36705777	0.0166476	SOX3_SOX2	ENST00000591473.1|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr7_+_5938351_5938379	0.0166401	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr3_+_187957646_187957656	0.0166254	SOX3_SOX2	ENST00000457242.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr3_-_11685345_11685432	0.0165474	SOX3_SOX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr7_+_29186192_29186222	0.0165334	SOX3_SOX2	ENST00000539406.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr11_+_93861993_93862102	0.0165302	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr8_+_86019382_86019487	0.0164696	SOX3_SOX2	ENST00000360375.3|LRRCC1|ENSG00000133739.11|leucine rich repeat and coiled-coil centrosomal protein 1
hg19_v2_chr1_-_155243235_155243307	0.016469	SOX3_SOX2	ENST00000355560.4|CLK2|ENSG00000176444.14|CDC-like kinase 2 	ENST00000368361.4|CLK2|ENSG00000176444.14|CDC-like kinase 2
hg19_v2_chr15_-_42186248_42186275	0.0164678	SOX3_SOX2	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chr3_+_193310918_193310934	0.0164592	SOX3_SOX2	ENST00000361908.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000392438.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361510.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361715.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361828.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361150.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr7_-_24797032_24797162	0.016447	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr5_+_43603229_43603356	0.0164099	SOX3_SOX2	ENST00000344920.4|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512996.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr11_-_82708435_82708472	0.0163678	SOX3_SOX2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr2_+_27237615_27237667	0.0163484	SOX3_SOX2	ENST00000458529.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3 	ENST00000402218.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3
hg19_v2_chr19_+_9473676_9473712	0.0163265	SOX3_SOX2	ENST00000343499.4|ZNF177|ENSG00000188629.7|zinc finger protein 177 	ENST00000592912.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr9_-_140142222_140142229	0.0162522	SOX3_SOX2	ENST00000344774.4|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A 	ENST00000388932.2|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr4_-_170192185_170192256	0.0162461	SOX3_SOX2	ENST00000284637.9|SH3RF1|ENSG00000154447.10|SH3 domain containing ring finger 1
hg19_v2_chr10_-_97200772_97200919	0.0162389	SOX3_SOX2	ENST00000371241.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000354106.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371239.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000361941.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000277982.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371245.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr1_+_2066252_2066369	0.0162347	SOX3_SOX2	ENST00000466352.1|PRKCZ|ENSG00000067606.11|protein kinase C, zeta
hg19_v2_chr2_+_169312725_169312810	0.0162126	SOX3_SOX2	ENST00000392687.4|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr5_-_141338627_141338627	0.0162022	SOX3_SOX2	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chrX_+_69509927_69509970	0.0161507	SOX3_SOX2	ENST00000374403.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr4_-_48782259_48782335	0.0161468	SOX3_SOX2	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr19_+_50180409_50180501	0.0161425	SOX3_SOX2	ENST00000391851.4|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chr2_-_166060382_166060411	0.0161253	SOX3_SOX2	ENST00000409101.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr12_+_21168630_21168630	0.0161149	SOX3_SOX2	ENST00000421593.2|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr3_-_120170052_120170100	0.0160989	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chrX_-_19689106_19689129	0.016058	SOX3_SOX2	ENST00000379716.1|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr3_-_64009102_64009236	0.0160454	SOX3_SOX2	ENST00000478185.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000482510.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000497323.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000492933.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000295901.4|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr19_-_18717627_18717660	0.0160402	SOX3_SOX2	ENST00000392386.3|CRLF1|ENSG00000006016.6|cytokine receptor-like factor 1
hg19_v2_chr1_+_226250379_226250427	0.0160124	SOX3_SOX2	ENST00000366815.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A 	ENST00000366814.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A
hg19_v2_chr6_+_42531798_42531810	0.0160032	SOX3_SOX2	ENST00000372903.2|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372899.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372901.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chr22_+_46449674_46449774	0.0159971	SOX3_SOX2	ENST00000381051.2|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr10_+_30722866_30722969	0.0159884	SOX3_SOX2	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr13_+_25946201_25946215	0.0159791	SOX3_SOX2	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr12_-_106641728_106641805	0.0159701	SOX3_SOX2	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr4_-_10459009_10459061	0.0159535	SOX3_SOX2	ENST00000507515.1|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr7_-_107643674_107643700	0.0159484	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr2_+_160590469_160590485	0.0159369	SOX3_SOX2	ENST00000409591.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr20_-_48184638_48184694	0.0159168	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr17_-_39183452_39183468	0.0158961	SOX3_SOX2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr18_+_9885760_9885780	0.0158598	SOX3_SOX2	ENST00000536353.2|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa) 	ENST00000584255.1|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr12_-_7281469_7281538	0.0158446	SOX3_SOX2	ENST00000542370.1|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular 	ENST00000266560.3|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular
hg19_v2_chr16_+_21610879_21610974	0.0158338	SOX3_SOX2	ENST00000396014.4|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr12_-_95945246_95945270	0.01579	SOX3_SOX2	ENST00000258499.3|USP44|ENSG00000136014.7|ubiquitin specific peptidase 44
hg19_v2_chr14_+_63671105_63671126	0.0157761	SOX3_SOX2	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr3_-_142682178_142682178	0.015711	SOX3_SOX2	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr11_-_125351481_125351529	0.0157	SOX3_SOX2	ENST00000577924.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr2_-_9770706_9770753	0.0156972	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr1_+_47489240_47489254	0.0156939	SOX3_SOX2	ENST00000371901.3|CYP4X1|ENSG00000186377.6|cytochrome P450, family 4, subfamily X, polypeptide 1
hg19_v2_chr17_+_61851504_61851570	0.0156928	SOX3_SOX2	ENST00000359353.5|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42 	ENST00000389924.2|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42
hg19_v2_chr1_+_205682497_205682497	0.0156818	SOX3_SOX2	ENST00000598338.1|AC119673.1|ENSG00000268313.1|AC119673.1
hg19_v2_chr7_+_105603738_105603753	0.0156647	SOX3_SOX2	ENST00000541203.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr8_+_82644669_82644738	0.0156095	SOX3_SOX2	ENST00000297265.4|CHMP4C|ENSG00000164695.4|charged multivesicular body protein 4C
hg19_v2_chr2_+_179059365_179059376	0.0156024	SOX3_SOX2	ENST00000190611.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr8_+_26435359_26435426	0.0156007	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr8_-_66546439_66546451	0.0155987	SOX3_SOX2	ENST00000276569.3|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr20_+_60697480_60697583	0.0155681	SOX3_SOX2	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr9_+_36136700_36136742	0.0155565	SOX3_SOX2	ENST00000396613.3|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377959.1|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377960.4|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2
hg19_v2_chr19_+_52839490_52839508	0.0154765	SOX3_SOX2	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr4_+_25915822_25915893	0.0154637	SOX3_SOX2	ENST00000506197.2|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chr7_-_32110451_32110523	0.0154631	SOX3_SOX2	ENST00000396191.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa 	ENST00000396182.2|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr1_-_113160826_113160844	0.0153608	SOX3_SOX2	ENST00000538187.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369664.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chr5_-_74062930_74062980	0.0152901	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr3_-_27763803_27763822	0.0152471	SOX3_SOX2	ENST00000449599.1|EOMES|ENSG00000163508.8|eomesodermin
hg19_v2_chr4_+_26165074_26165110	0.0152429	SOX3_SOX2	ENST00000512351.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr20_+_11898507_11898565	0.0152079	SOX3_SOX2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr15_+_38544476_38544574	0.0151961	SOX3_SOX2	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr18_+_55888767_55888809	0.0151797	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr1_+_166808692_166808774	0.0151721	SOX3_SOX2	ENST00000367876.4|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr1_+_32666188_32666274	0.0151118	SOX3_SOX2	ENST00000421922.2|CCDC28B|ENSG00000160050.10|coiled-coil domain containing 28B
hg19_v2_chr1_-_235813290_235813323	0.0150969	SOX3_SOX2	ENST00000391854.2|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr10_+_102106829_102106881	0.015093	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr1_+_166808667_166808690	0.0150792	SOX3_SOX2	ENST00000537173.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain 	ENST00000536514.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain 	ENST00000449930.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr9_-_115819039_115819082	0.0150628	SOX3_SOX2	ENST00000555206.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr11_-_123525289_123525341	0.0150316	SOX3_SOX2	ENST00000392770.2|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000299333.3|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000530277.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr6_-_112115074_112115094	0.0149985	SOX3_SOX2	ENST00000368667.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr1_+_185126598_185126655	0.014979	SOX3_SOX2	ENST00000450350.1|SWT1|ENSG00000116668.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
hg19_v2_chr16_-_70239683_70239683	0.0149218	SOX3_SOX2	ENST00000601706.1|AC009060.1|ENSG00000269746.1|Uncharacterized protein
hg19_v2_chr16_+_68573116_68573228	0.0148969	SOX3_SOX2	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr6_-_142409936_142409936	0.0148931	SOX3_SOX2	ENST00000258042.1|NMBR|ENSG00000135577.4|neuromedin B receptor
hg19_v2_chr7_-_14942944_14942997	0.0148603	SOX3_SOX2	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr3_+_46616017_46616045	0.0148248	SOX3_SOX2	ENST00000542931.1|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr6_-_75915757_75915775	0.0148146	SOX3_SOX2	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr13_+_51483814_51483935	0.0148015	SOX3_SOX2	ENST00000336617.3|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B 	ENST00000422660.1|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B
hg19_v2_chr14_-_63974941_63974962	0.0147552	SOX3_SOX2	ENST00000422769.2|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr3_+_191046810_191046874	0.0147138	SOX3_SOX2	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr11_+_237016_237032	0.014711	SOX3_SOX2	ENST00000352303.5|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr2_-_74648702_74648782	0.0146876	SOX3_SOX2	ENST00000518863.1|C2orf81|ENSG00000159239.7|chromosome 2 open reading frame 81
hg19_v2_chr2_-_86422523_86422595	0.0146696	SOX3_SOX2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr20_+_1184098_1184098	0.0146508	SOX3_SOX2	ENST00000400633.1|C20orf202|ENSG00000215595.1|chromosome 20 open reading frame 202
hg19_v2_chr8_-_105601134_105601252	0.0146172	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr19_+_11708259_11708309	0.01461	SOX3_SOX2	ENST00000587939.1|ZNF627|ENSG00000198551.5|zinc finger protein 627 	ENST00000588174.1|ZNF627|ENSG00000198551.5|zinc finger protein 627
hg19_v2_chr12_-_46766577_46766650	0.0145678	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr1_-_247697141_247697141	0.0145513	SOX3_SOX2	ENST00000366487.3|OR2C3|ENSG00000196242.6|olfactory receptor, family 2, subfamily C, member 3
hg19_v2_chr15_+_76196234_76196466	0.0145056	SOX3_SOX2	ENST00000540507.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000565036.1|FBXO22|ENSG00000167196.9|F-box protein 22 	ENST00000569054.1|FBXO22|ENSG00000167196.9|F-box protein 22
hg19_v2_chr19_-_45004556_45004581	0.0144755	SOX3_SOX2	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr2_-_170219037_170219050	0.0144608	SOX3_SOX2	ENST00000443831.1|LRP2|ENSG00000081479.8|low density lipoprotein receptor-related protein 2
hg19_v2_chr2_-_54197915_54197977	0.0144601	SOX3_SOX2	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr13_-_27334879_27334930	0.0144458	SOX3_SOX2	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr1_+_97188188_97188273	0.0144406	SOX3_SOX2	ENST00000541987.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr1_+_53793885_53793917	0.0144395	SOX3_SOX2	ENST00000445039.2|RP4-784A16.5|ENSG00000225675.2|RP4-784A16.5
hg19_v2_chr5_+_65222500_65222601	0.0144341	SOX3_SOX2	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr4_+_699537_699600	0.0144275	SOX3_SOX2	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr22_-_22090064_22090127	0.0143842	SOX3_SOX2	ENST00000339468.3|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr7_-_8302207_8302242	0.0143115	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr6_-_2972075_2972090	0.014184	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr11_+_236959_237015	0.0141497	SOX3_SOX2	ENST00000431206.2|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENST00000528906.1|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr6_+_134274354_134274371	0.0141354	SOX3_SOX2	ENST00000367869.1|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr10_-_11574274_11574428	0.0141339	SOX3_SOX2	ENST00000277575.5|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chrX_-_45060135_45060149	0.014087	SOX3_SOX2	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr10_+_19777984_19778028	0.0140721	SOX3_SOX2	ENST00000377265.3|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1 	ENST00000455457.2|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1
hg19_v2_chr15_-_35088340_35088340	0.0140386	SOX3_SOX2	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chr12_-_93836028_93836039	0.0140306	SOX3_SOX2	ENST00000318066.2|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr9_-_138799070_138799284	0.014023	SOX3_SOX2	ENST00000389532.4|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1 	ENST00000409386.3|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1
hg19_v2_chr11_+_125034586_125034604	0.013987	SOX3_SOX2	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr4_-_169239921_169239972	0.0139845	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr5_-_146833222_146833261	0.0139656	SOX3_SOX2	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr19_-_52150053_52150151	0.0138722	SOX3_SOX2	ENST00000599649.1|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000360844.6|SIGLEC14|ENSG00000254415.3|sialic acid binding Ig-like lectin 14 	ENST00000429354.3|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000222107.4|SIGLEC5|ENSG00000105501.7|sialic acid binding Ig-like lectin 5
hg19_v2_chr20_+_3869562_3869581	0.0138426	SOX3_SOX2	ENST00000495692.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr8_-_18541603_18541650	0.0138412	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr12_-_9913489_9913506	0.0138383	SOX3_SOX2	ENST00000228434.3|CD69|ENSG00000110848.4|CD69 molecule 	ENST00000536709.1|CD69|ENSG00000110848.4|CD69 molecule
hg19_v2_chr10_-_13390270_13390316	0.0138227	SOX3_SOX2	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr15_-_35047166_35047204	0.0137661	SOX3_SOX2	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr14_-_22005062_22005082	0.0137479	SOX3_SOX2	ENST00000317492.5|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr13_+_113656022_113656041	0.0137421	SOX3_SOX2	ENST00000423482.2|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr5_-_41071392_41071405	0.0137236	SOX3_SOX2	ENST00000399564.4|MROH2B|ENSG00000171495.12|maestro heat-like repeat family member 2B
hg19_v2_chr9_-_117692697_117692744	0.0137169	SOX3_SOX2	ENST00000223795.2|TNFSF8|ENSG00000106952.3|tumor necrosis factor (ligand) superfamily, member 8
hg19_v2_chr5_-_58882219_58882337	0.0136926	SOX3_SOX2	ENST00000505453.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000360047.5|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr2_+_179059188_179059250	0.013675	SOX3_SOX2	ENST00000392505.2|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000359685.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000357080.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000409045.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr2_-_74781061_74781088	0.0136628	SOX3_SOX2	ENST00000264094.3|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000393937.2|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000409986.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr11_-_89224638_89224653	0.0136299	SOX3_SOX2	ENST00000535633.1|NOX4|ENSG00000086991.8|NADPH oxidase 4 	ENST00000263317.4|NOX4|ENSG00000086991.8|NADPH oxidase 4
hg19_v2_chr11_-_64900791_64900834	0.0136183	SOX3_SOX2	ENST00000531018.1|SYVN1|ENSG00000162298.12|synovial apoptosis inhibitor 1, synoviolin
hg19_v2_chr1_+_26737253_26737269	0.0136004	SOX3_SOX2	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr10_+_97803151_97803348	0.0135729	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr6_-_31619697_31619736	0.0135432	SOX3_SOX2	ENST00000434444.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr9_-_23826298_23826344	0.0135344	SOX3_SOX2	ENST00000380117.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr15_-_83876758_83876770	0.0135269	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr18_+_56530692_56530723	0.0135134	SOX3_SOX2	ENST00000588601.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr12_-_56120838_56120848	0.0134861	SOX3_SOX2	ENST00000548160.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr17_+_55334364_55334412	0.013471	SOX3_SOX2	ENST00000322684.3|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2 	ENST00000579590.1|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr8_+_11660227_11660306	0.013465	SOX3_SOX2	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chr7_+_107301065_107301080	0.0134139	SOX3_SOX2	ENST00000265715.3|SLC26A4|ENSG00000091137.7|solute carrier family 26 (anion exchanger), member 4
hg19_v2_chr3_+_23851928_23851951	0.0134091	SOX3_SOX2	ENST00000467766.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1 	ENST00000424381.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr6_+_134274322_134274342	0.0133922	SOX3_SOX2	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr4_+_41983713_41983798	0.0133792	SOX3_SOX2	ENST00000333141.5|DCAF4L1|ENSG00000182308.5|DDB1 and CUL4 associated factor 4-like 1
hg19_v2_chr11_+_20044375_20044414	0.0133625	SOX3_SOX2	ENST00000525322.1|NAV2|ENSG00000166833.15|neuron navigator 2 	ENST00000530408.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr19_-_46476791_46476819	0.0133531	SOX3_SOX2	ENST00000263257.5|NOVA2|ENSG00000104967.6|neuro-oncological ventral antigen 2
hg19_v2_chr4_+_175204818_175204833	0.0133057	SOX3_SOX2	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr3_-_185655795_185655924	0.0132403	SOX3_SOX2	ENST00000342294.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000382191.4|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila) 	ENST00000453386.2|TRA2B|ENSG00000136527.13|transformer 2 beta homolog (Drosophila)
hg19_v2_chr8_-_117043_117043	0.0132357	SOX3_SOX2	ENST00000320901.3|OR4F21|ENSG00000176269.3|olfactory receptor, family 4, subfamily F, member 21
hg19_v2_chrX_+_47342970_47342970	0.0132284	SOX3_SOX2	ENST00000357412.1|CXorf24|ENSG00000196741.3|chromosome X open reading frame 24
hg19_v2_chr5_-_159739532_159739607	0.0132187	SOX3_SOX2	ENST00000520748.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000393977.3|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000257536.7|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr9_-_116061476_116061476	0.0132044	SOX3_SOX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr8_+_67405438_67405450	0.0131645	SOX3_SOX2	ENST00000305454.3|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr14_-_95624227_95624347	0.0131468	SOX3_SOX2	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chr11_-_67981295_67981334	0.0131177	SOX3_SOX2	ENST00000405515.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr10_-_97175444_97175481	0.0130711	SOX3_SOX2	ENST00000486141.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr16_+_67063142_67063153	0.013062	SOX3_SOX2	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr2_+_228337079_228337092	0.0130618	SOX3_SOX2	ENST00000409315.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000373671.3|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000409171.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr13_+_34392185_34392191	0.0129925	SOX3_SOX2	ENST00000380071.3|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr4_-_53522703_53522757	0.0129827	SOX3_SOX2	ENST00000508499.1|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr13_-_114843416_114843438	0.0129701	SOX3_SOX2	ENST00000389544.4|RASA3|ENSG00000185989.9|RAS p21 protein activator 3
hg19_v2_chr4_+_159593271_159593295	0.0128966	SOX3_SOX2	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr14_+_75746781_75746896	0.0128787	SOX3_SOX2	ENST00000555347.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr16_+_72459838_72459857	0.0128614	SOX3_SOX2	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr6_+_56954919_56955005	0.0128441	SOX3_SOX2	ENST00000508603.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000491832.2|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370710.6|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr17_+_68100989_68101026	0.012805	SOX3_SOX2	ENST00000585558.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392670.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr2_+_177028805_177028805	0.0128006	SOX3_SOX2	ENST00000249440.3|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr10_-_101825151_101825200	0.0127848	SOX3_SOX2	ENST00000441382.1|CPN1|ENSG00000120054.7|carboxypeptidase N, polypeptide 1
hg19_v2_chr6_+_32811861_32811872	0.0127762	SOX3_SOX2	ENST00000453426.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr7_+_86273952_86274090	0.0127623	SOX3_SOX2	ENST00000536043.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr12_+_19358228_19358259	0.012697	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr12_+_99038998_99039078	0.0126697	SOX3_SOX2	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr13_-_31038370_31038509	0.0126526	SOX3_SOX2	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr2_+_160568978_160569064	0.0125422	SOX3_SOX2	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr3_-_149688896_149688970	0.0124595	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr10_+_35415851_35415941	0.012414	SOX3_SOX2	ENST00000374726.3|CREM|ENSG00000095794.15|cAMP responsive element modulator
hg19_v2_chrX_-_11284095_11284131	0.0124065	SOX3_SOX2	ENST00000303025.6|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6 	ENST00000534860.1|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr15_-_52043722_52043782	0.012393	SOX3_SOX2	ENST00000454181.2|LYSMD2|ENSG00000140280.9|LysM, putative peptidoglycan-binding, domain containing 2
hg19_v2_chr11_-_105948040_105948082	0.0123717	SOX3_SOX2	ENST00000534815.1|KBTBD3|ENSG00000182359.10|kelch repeat and BTB (POZ) domain containing 3
hg19_v2_chr2_+_30569506_30569525	0.0123654	SOX3_SOX2	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr5_+_67588391_67588411	0.0123161	SOX3_SOX2	ENST00000523872.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chrX_-_75005054_75005094	0.0122917	SOX3_SOX2	ENST00000373359.2|MAGEE2|ENSG00000186675.5|melanoma antigen family E, 2
hg19_v2_chrX_+_46306624_46306709	0.0122516	SOX3_SOX2	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr8_-_53322303_53322340	0.0122489	SOX3_SOX2	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr17_-_70053866_70053882	0.0122372	SOX3_SOX2	ENST00000540802.1|RP11-84E24.2|ENSG00000254148.3|RP11-84E24.2
hg19_v2_chr6_-_139695757_139695795	0.0122349	SOX3_SOX2	ENST00000367651.2|CITED2|ENSG00000164442.8|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
hg19_v2_chr10_+_73724123_73724206	0.0122033	SOX3_SOX2	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chrX_+_46404928_46404964	0.0121947	SOX3_SOX2	ENST00000421685.2|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head) 	ENST00000609887.1|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head)
hg19_v2_chr6_-_130536774_130536792	0.0121765	SOX3_SOX2	ENST00000532763.1|SAMD3|ENSG00000164483.12|sterile alpha motif domain containing 3
hg19_v2_chr6_-_31632962_31632997	0.0121702	SOX3_SOX2	ENST00000456540.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1 	ENST00000445768.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1
hg19_v2_chr9_+_112403059_112403079	0.0120938	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr1_-_202858227_202858283	0.012089	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chr19_+_34663551_34663564	0.0120528	SOX3_SOX2	ENST00000586157.1|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr10_+_11207485_11207496	0.0120363	SOX3_SOX2	ENST00000537122.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr4_-_15656923_15657035	0.0120093	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr14_-_77923897_77923983	0.0120057	SOX3_SOX2	ENST00000343765.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000327028.4|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000556412.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557466.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000448935.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000553888.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557658.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
hg19_v2_chr2_-_178128199_178128245	0.0119827	SOX3_SOX2	ENST00000449627.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr10_+_123922941_123923023	0.0119594	SOX3_SOX2	ENST00000360561.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr4_+_156680143_156680152	0.0119275	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr5_-_179780312_179780387	0.0119139	SOX3_SOX2	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr3_-_128294929_128294929	0.0118915	SOX3_SOX2	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr2_+_75061108_75061265	0.0118682	SOX3_SOX2	ENST00000290573.2|HK2|ENSG00000159399.5|hexokinase 2
hg19_v2_chr1_-_28520384_28520393	0.0118017	SOX3_SOX2	ENST00000305392.3|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr5_+_98104978_98105010	0.011775	SOX3_SOX2	ENST00000308234.7|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr15_-_50647370_50647405	0.011686	SOX3_SOX2	ENST00000558970.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000396464.3|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000560825.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr7_-_30066233_30066332	0.0116665	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr18_+_43913973_43914005	0.0116539	SOX3_SOX2	ENST00000590330.1|RNF165|ENSG00000141622.9|ring finger protein 165
hg19_v2_chr4_+_141677577_141677682	0.0116465	SOX3_SOX2	ENST00000609937.1|RP11-102N12.3|ENSG00000273472.1|RP11-102N12.3
hg19_v2_chr14_+_54976546_54976602	0.0116123	SOX3_SOX2	ENST00000216420.7|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr3_+_123813543_123813587	0.011603	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr8_+_9009296_9009313	0.0116	SOX3_SOX2	ENST00000521718.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr19_+_58095501_58095628	0.0115803	SOX3_SOX2	ENST00000536878.2|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597850.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597219.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000598689.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000599456.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000307468.4|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1
hg19_v2_chr2_-_197791441_197791525	0.0115688	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr4_-_140477910_140477923	0.011559	SOX3_SOX2	ENST00000404104.3|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7
hg19_v2_chr19_-_52307357_52307368	0.0115419	SOX3_SOX2	ENST00000594900.1|FPR1|ENSG00000171051.4|formyl peptide receptor 1
hg19_v2_chr3_-_88108212_88108223	0.0115345	SOX3_SOX2	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chrX_-_110654147_110654194	0.0115333	SOX3_SOX2	ENST00000358070.4|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr6_-_91006627_91006641	0.0115103	SOX3_SOX2	ENST00000537989.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr17_+_19030782_19030907	0.0115072	SOX3_SOX2	ENST00000344415.4|GRAPL|ENSG00000189152.6|GRB2-related adaptor protein-like 	ENST00000577213.1|GRAPL|ENSG00000189152.6|GRB2-related adaptor protein-like
hg19_v2_chr11_-_69294647_69294708	0.0114875	SOX3_SOX2	ENST00000542064.1|AP000439.3|ENSG00000255774.1|AP000439.3
hg19_v2_chr17_-_20946710_20946737	0.0114828	SOX3_SOX2	ENST00000584538.1|USP22|ENSG00000124422.7|ubiquitin specific peptidase 22
hg19_v2_chr16_+_69984810_69984889	0.0114436	SOX3_SOX2	ENST00000393701.2|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A 	ENST00000568461.1|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A
hg19_v2_chr9_-_132586378_132586433	0.0114104	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr6_-_7313381_7313458	0.0113457	SOX3_SOX2	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr6_-_167040693_167040725	0.0113392	SOX3_SOX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr19_+_45409011_45409069	0.0113251	SOX3_SOX2	ENST00000252486.4|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000446996.1|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000434152.1|APOE|ENSG00000130203.5|apolipoprotein E
hg19_v2_chr3_+_73045936_73046128	0.0113112	SOX3_SOX2	ENST00000356692.5|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000488810.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000394284.3|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000295862.9|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000495566.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2
hg19_v2_chrX_+_114827818_114827842	0.0113044	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr5_-_131347583_131347870	0.0112391	SOX3_SOX2	ENST00000379255.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000430403.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000544770.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379246.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000414078.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000441995.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6
hg19_v2_chr11_-_85397167_85397320	0.0112269	SOX3_SOX2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr15_-_79103757_79103815	0.011217	SOX3_SOX2	ENST00000388820.4|ADAMTS7|ENSG00000136378.10|ADAM metallopeptidase with thrombospondin type 1 motif, 7
hg19_v2_chr10_+_11207438_11207455	0.0112046	SOX3_SOX2	ENST00000609692.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000354897.3|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr20_+_39765581_39765646	0.0112031	SOX3_SOX2	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr4_-_186733363_186733392	0.011158	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr19_+_7743387_7743387	0.0111485	SOX3_SOX2	ENST00000597959.1|CTD-3214H19.16|ENSG00000269711.1|CTD-3214H19.16
hg19_v2_chr2_-_18770812_18770839	0.0111345	SOX3_SOX2	ENST00000359846.2|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000532967.1|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000444297.2|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000304081.4|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000600945.1|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB
hg19_v2_chr22_+_50247449_50247515	0.0111289	SOX3_SOX2	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr1_-_739137_739137	0.011119	SOX3_SOX2	ENST00000599533.1|AL669831.1|ENSG00000269831.1|Uncharacterized protein
hg19_v2_chr6_-_111136513_111136525	0.0111133	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chrX_+_114827851_114827872	0.0110517	SOX3_SOX2	ENST00000539310.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr1_-_235814048_235814067	0.0110259	SOX3_SOX2	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr1_-_151162606_151162689	0.0110227	SOX3_SOX2	ENST00000354473.4|VPS72|ENSG00000163159.7|vacuolar protein sorting 72 homolog (S. cerevisiae) 	ENST00000368892.4|VPS72|ENSG00000163159.7|vacuolar protein sorting 72 homolog (S. cerevisiae)
hg19_v2_chrX_+_147582228_147582320	0.0110175	SOX3_SOX2	ENST00000342251.3|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr11_+_120255997_120256048	0.0109667	SOX3_SOX2	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr5_-_157079428_157079452	0.0109478	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr13_-_113242439_113242488	0.0109428	SOX3_SOX2	ENST00000375669.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3 	ENST00000261965.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3
hg19_v2_chr12_-_88974236_88974256	0.0109344	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr5_-_111091948_111091994	0.0109193	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr4_-_175204765_175204843	0.0108985	SOX3_SOX2	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr3_-_27525865_27525887	0.0108831	SOX3_SOX2	ENST00000445684.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr11_+_45943169_45943198	0.0108484	SOX3_SOX2	ENST00000529052.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B 	ENST00000531526.1|GYLTL1B|ENSG00000165905.12|glycosyltransferase-like 1B
hg19_v2_chr12_-_6716534_6716557	0.0108283	SOX3_SOX2	ENST00000544484.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000309577.6|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000357008.2|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr19_+_10222189_10222214	0.0108227	SOX3_SOX2	ENST00000321826.4|P2RY11|ENSG00000244165.1|purinergic receptor P2Y, G-protein coupled, 11
hg19_v2_chr9_-_14313641_14313666	0.010768	SOX3_SOX2	ENST00000380953.1|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr12_+_93772402_93772430	0.010757	SOX3_SOX2	ENST00000546925.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr5_+_93954039_93954052	0.0107285	SOX3_SOX2	ENST00000265140.5|ANKRD32|ENSG00000133302.8|ankyrin repeat domain 32
hg19_v2_chr4_-_22517620_22517712	0.0106983	SOX3_SOX2	ENST00000502482.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125 	ENST00000334304.5|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr11_-_66445219_66445392	0.0106792	SOX3_SOX2	ENST00000525754.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531969.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000524637.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531036.2|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000310046.4|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B
hg19_v2_chr19_+_55043977_55044008	0.0106572	SOX3_SOX2	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr8_-_124279627_124279627	0.0106365	SOX3_SOX2	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr1_-_11024258_11024258	0.0105924	SOX3_SOX2	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr9_+_116638562_116638606	0.0105525	SOX3_SOX2	ENST00000374126.5|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000288466.7|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr2_+_70142232_70142320	0.0105328	SOX3_SOX2	ENST00000540449.1|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr16_-_4323015_4323076	0.0105035	SOX3_SOX2	ENST00000204517.6|TFAP4|ENSG00000090447.7|transcription factor AP-4 (activating enhancer binding protein 4)
hg19_v2_chr10_+_11047259_11047351	0.0104754	SOX3_SOX2	ENST00000379261.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000416382.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr13_+_28194873_28194954	0.0104386	SOX3_SOX2	ENST00000302979.3|POLR1D|ENSG00000186184.11|polymerase (RNA) I polypeptide D, 16kDa
hg19_v2_chr5_+_102201509_102201528	0.0104312	SOX3_SOX2	ENST00000348126.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000379787.4|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr5_-_14871866_14871916	0.0103737	SOX3_SOX2	ENST00000284268.6|ANKH|ENSG00000154122.8|ANKH inorganic pyrophosphate transport regulator
hg19_v2_chr16_+_88636789_88636827	0.0103497	SOX3_SOX2	ENST00000301011.5|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18 	ENST00000452588.2|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr20_-_50418972_50419029	0.010348	SOX3_SOX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr2_-_84686552_84686624	0.0103331	SOX3_SOX2	ENST00000393868.2|SUCLG1|ENSG00000163541.7|succinate-CoA ligase, alpha subunit
hg19_v2_chr13_-_99667960_99668068	0.0103195	SOX3_SOX2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr12_-_31477072_31477110	0.010313	SOX3_SOX2	ENST00000454658.2|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr1_-_150602035_150602095	0.0102808	SOX3_SOX2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr12_-_31478428_31478469	0.0102422	SOX3_SOX2	ENST00000543615.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr2_+_10262857_10262873	0.0102272	SOX3_SOX2	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr11_-_107729887_107729927	0.0102225	SOX3_SOX2	ENST00000525815.1|SLC35F2|ENSG00000110660.10|solute carrier family 35, member F2
hg19_v2_chr9_+_125703282_125703337	0.0102021	SOX3_SOX2	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr6_+_36410762_36410858	0.0101545	SOX3_SOX2	ENST00000483557.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000498267.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000544295.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000449081.2|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000536244.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000460983.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20
hg19_v2_chr1_-_217311090_217311097	0.0101362	SOX3_SOX2	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr20_+_47835884_47835920	0.0101299	SOX3_SOX2	ENST00000371764.4|DDX27|ENSG00000124228.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
hg19_v2_chr12_-_6716569_6716642	0.0101266	SOX3_SOX2	ENST00000544040.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000545942.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr4_-_87281224_87281375	0.0100905	SOX3_SOX2	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr10_+_18429671_18429887	0.0100488	SOX3_SOX2	ENST00000282343.8|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr4_+_15480828_15480868	0.0100462	SOX3_SOX2	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr2_-_61765315_61765422	0.0100433	SOX3_SOX2	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr18_-_7117813_7117843	0.0100044	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr3_-_114173530_114173571	0.00998989	SOX3_SOX2	ENST00000470311.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr10_-_81708854_81708867	0.00996195	SOX3_SOX2	ENST00000372292.3|SFTPD|ENSG00000133661.11|surfactant protein D
hg19_v2_chr16_-_85146040_85146114	0.00993721	SOX3_SOX2	ENST00000539556.1|FAM92B|ENSG00000153789.8|family with sequence similarity 92, member B
hg19_v2_chr1_+_54411715_54411760	0.00992522	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr10_-_123734683_123734738	0.00988573	SOX3_SOX2	ENST00000369017.5|NSMCE4A|ENSG00000107672.10|non-SMC element 4 homolog A (S. cerevisiae) 	ENST00000369023.3|NSMCE4A|ENSG00000107672.10|non-SMC element 4 homolog A (S. cerevisiae)
hg19_v2_chr4_+_141445333_141445362	0.00988197	SOX3_SOX2	ENST00000507667.1|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr14_+_100259666_100259685	0.00985024	SOX3_SOX2	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr7_-_27142290_27142430	0.00984964	SOX3_SOX2	ENST00000222718.5|HOXA2|ENSG00000105996.5|homeobox A2
hg19_v2_chr1_-_21113105_21113186	0.00976907	SOX3_SOX2	ENST00000375000.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000419490.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000414993.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000443615.1|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3 	ENST00000312239.5|HP1BP3|ENSG00000127483.13|heterochromatin protein 1, binding protein 3
hg19_v2_chr15_-_44487408_44487476	0.00972884	SOX3_SOX2	ENST00000402883.1|FRMD5|ENSG00000171877.15|FERM domain containing 5 	ENST00000417257.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr7_+_12727250_12727265	0.00971118	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr12_+_25055243_25055243	0.00968992	SOX3_SOX2	ENST00000599478.1|AC026310.1|ENSG00000268865.1|Protein 101060047
hg19_v2_chr4_+_95972822_95972844	0.00964027	SOX3_SOX2	ENST00000509540.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB 	ENST00000440890.2|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr16_-_71918033_71918107	0.00961876	SOX3_SOX2	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr9_+_130026756_130026871	0.00957231	SOX3_SOX2	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr19_-_21950362_21950430	0.00954514	SOX3_SOX2	ENST00000358296.6|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr5_+_55033845_55033870	0.00950067	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr2_+_210518057_210518117	0.00948149	SOX3_SOX2	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr17_+_43972010_43972040	0.00946686	SOX3_SOX2	ENST00000334239.8|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000446361.3|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr4_+_47487285_47487366	0.00945985	SOX3_SOX2	ENST00000273859.3|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D 	ENST00000504445.1|ATP10D|ENSG00000145246.9|ATPase, class V, type 10D
hg19_v2_chr17_+_53046096_53046157	0.00941751	SOX3_SOX2	ENST00000376352.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000299341.4|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000405898.1|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000434978.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000398391.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4
hg19_v2_chr2_+_220492116_220492137	0.00940322	SOX3_SOX2	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr22_-_25342662_25342662	0.00939464	SOX3_SOX2	ENST00000407886.1|TMEM211|ENSG00000206069.4|transmembrane protein 211
hg19_v2_chr16_+_15068955_15068991	0.00937984	SOX3_SOX2	ENST00000396410.4|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000569715.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000450288.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr18_-_61311485_61311532	0.00935285	SOX3_SOX2	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr1_+_227751281_227751298	0.0093461	SOX3_SOX2	ENST00000440339.1|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr7_-_148725544_148725630	0.00932694	SOX3_SOX2	ENST00000413966.1|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr18_+_72201664_72201703	0.00929362	SOX3_SOX2	ENST00000358821.3|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
hg19_v2_chr3_-_27525826_27525840	0.00928802	SOX3_SOX2	ENST00000454389.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000440156.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000437179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000446700.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000455077.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000435667.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000388777.4|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000425128.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr10_+_72164135_72164135	0.00928137	SOX3_SOX2	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chrX_+_46306714_46306741	0.00924975	SOX3_SOX2	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr3_+_156008809_156008839	0.00924015	SOX3_SOX2	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr8_-_145688231_145688261	0.0092307	SOX3_SOX2	ENST00000530374.1|CYHR1|ENSG00000187954.8|cysteine/histidine-rich 1
hg19_v2_chrX_+_135252050_135252085	0.00922143	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr12_-_117628253_117628308	0.00921302	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr3_-_15540055_15540120	0.00920678	SOX3_SOX2	ENST00000605797.1|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 	ENST00000435459.2|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
hg19_v2_chr16_-_74455290_74455290	0.00919313	SOX3_SOX2	ENST00000339953.5|CLEC18B|ENSG00000140839.7|C-type lectin domain family 18, member B
hg19_v2_chr6_+_150070831_150070856	0.00913034	SOX3_SOX2	ENST00000367380.5|PCMT1|ENSG00000120265.12|protein-L-isoaspartate (D-aspartate) O-methyltransferase
hg19_v2_chr3_+_50192457_50192498	0.00912404	SOX3_SOX2	ENST00000414301.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 	ENST00000450338.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr3_+_187871659_187871779	0.00912191	SOX3_SOX2	ENST00000416784.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma 	ENST00000430340.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma 	ENST00000414139.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma 	ENST00000454789.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr3_+_107241783_107241850	0.00911362	SOX3_SOX2	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr2_-_43266680_43266701	0.00909943	SOX3_SOX2	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr3_-_155461515_155461515	0.00909506	SOX3_SOX2	ENST00000399242.2|AC104472.1|ENSG00000214919.2|CDNA FLJ26134 fis, clone TMS03713; Uncharacterized protein
hg19_v2_chr6_+_159291090_159291223	0.00906298	SOX3_SOX2	ENST00000367073.4|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99 	ENST00000608817.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr18_+_56532053_56532095	0.00904013	SOX3_SOX2	ENST00000592452.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr19_-_55691472_55691551	0.00901313	SOX3_SOX2	ENST00000537500.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr2_-_20550382_20550413	0.00897908	SOX3_SOX2	ENST00000536417.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr4_-_143227088_143227105	0.00897904	SOX3_SOX2	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr21_-_37270727_37270727	0.00897003	SOX3_SOX2	ENST00000599809.1|FKSG68|ENSG00000267812.1|FKSG68
hg19_v2_chr7_-_7575477_7575491	0.00896016	SOX3_SOX2	ENST00000399429.3|COL28A1|ENSG00000215018.5|collagen, type XXVIII, alpha 1
hg19_v2_chr2_+_191273052_191273121	0.00889972	SOX3_SOX2	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr2_-_64881018_64881064	0.00882465	SOX3_SOX2	ENST00000313349.3|SERTAD2|ENSG00000179833.4|SERTA domain containing 2
hg19_v2_chrX_+_44732757_44732860	0.0088133	SOX3_SOX2	ENST00000377967.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000536777.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000382899.4|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A 	ENST00000543216.1|KDM6A|ENSG00000147050.10|lysine (K)-specific demethylase 6A
hg19_v2_chr9_+_90112741_90112761	0.00877319	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr17_-_79829190_79829282	0.00876398	SOX3_SOX2	ENST00000581876.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000584461.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000583868.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000400721.4|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha 	ENST00000269321.7|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr5_-_38595498_38595514	0.00867745	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr6_+_32936942_32937043	0.00865595	SOX3_SOX2	ENST00000496118.2|BRD2|ENSG00000204256.8|bromodomain containing 2
hg19_v2_chr3_+_141596371_141596516	0.00862338	SOX3_SOX2	ENST00000495216.1|ATP1B3|ENSG00000069849.6|ATPase, Na+/K+ transporting, beta 3 polypeptide
hg19_v2_chr2_-_161350305_161350391	0.00861403	SOX3_SOX2	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr2_+_220492287_220492338	0.00855722	SOX3_SOX2	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr2_+_17721920_17721933	0.00855468	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr4_+_95917383_95917421	0.00855307	SOX3_SOX2	ENST00000512312.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr11_-_2906979_2907111	0.00850411	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr12_-_18243119_18243133	0.00841006	SOX3_SOX2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr20_+_3870024_3870072	0.0083694	SOX3_SOX2	ENST00000610179.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr1_+_70687079_70687108	0.0082755	SOX3_SOX2	ENST00000395136.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr12_+_9142131_9142229	0.00823188	SOX3_SOX2	ENST00000356986.3|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1 	ENST00000266551.4|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr7_-_140340098_140340169	0.00820125	SOX3_SOX2	ENST00000477488.1|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A
hg19_v2_chr20_+_3869423_3869486	0.00820046	SOX3_SOX2	ENST00000497424.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr7_-_99679324_99679371	0.00819238	SOX3_SOX2	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr13_+_39612442_39612482	0.00815252	SOX3_SOX2	ENST00000470258.1|NHLRC3|ENSG00000188811.8|NHL repeat containing 3 	ENST00000379600.3|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr5_+_179921344_179921423	0.00813255	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr17_-_33521412_33521412	0.00808512	SOX3_SOX2	ENST00000297307.5|SLC35G3|ENSG00000164729.6|solute carrier family 35, member G3
hg19_v2_chr1_-_53793584_53793719	0.00807045	SOX3_SOX2	ENST00000354412.3|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000347547.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000306052.6|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr11_+_236540_236552	0.00805596	SOX3_SOX2	ENST00000532097.1|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr1_+_61330931_61331017	0.008023	SOX3_SOX2	ENST00000371191.1|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr3_+_50192499_50192534	0.00801208	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr2_+_171571827_171571861	0.00801115	SOX3_SOX2	ENST00000375281.3|SP5|ENSG00000204335.3|Sp5 transcription factor
hg19_v2_chr7_+_29234375_29234558	0.00795374	SOX3_SOX2	ENST00000409350.1|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000495789.2|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000539389.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr17_+_7477040_7477257	0.007905	SOX3_SOX2	ENST00000581384.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577929.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr4_+_156680153_156680242	0.00787296	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr7_-_42276612_42276782	0.00782743	SOX3_SOX2	ENST00000395925.3|GLI3|ENSG00000106571.8|GLI family zinc finger 3 	ENST00000437480.1|GLI3|ENSG00000106571.8|GLI family zinc finger 3
hg19_v2_chr1_-_8086343_8086378	0.00780178	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr16_-_19533404_19533467	0.00778952	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr11_+_120971882_120971882	0.00776569	SOX3_SOX2	ENST00000392793.1|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr6_+_18387570_18387588	0.00773571	SOX3_SOX2	ENST00000259939.3|RNF144B|ENSG00000137393.8|ring finger protein 144B
hg19_v2_chr22_+_27068704_27068763	0.00770778	SOX3_SOX2	ENST00000444388.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000450963.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000449017.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr3_-_148939835_148939842	0.00770117	SOX3_SOX2	ENST00000264613.6|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr4_-_87281196_87281219	0.007682	SOX3_SOX2	ENST00000359221.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr22_+_42372931_42372947	0.00767627	SOX3_SOX2	ENST00000328414.8|SEPT3|ENSG00000100167.15|septin 3 	ENST00000396425.3|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr11_-_82997371_82997416	0.00760613	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr2_+_105858200_105858200	0.0075778	SOX3_SOX2	ENST00000258456.1|GPR45|ENSG00000135973.1|G protein-coupled receptor 45
hg19_v2_chr6_-_42110342_42110365	0.00754243	SOX3_SOX2	ENST00000356542.5|C6orf132|ENSG00000188112.4|chromosome 6 open reading frame 132
hg19_v2_chr12_-_15942309_15942330	0.0075324	SOX3_SOX2	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr6_-_105850937_105850983	0.00749746	SOX3_SOX2	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr15_-_65281775_65281844	0.00747159	SOX3_SOX2	ENST00000433215.2|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000558415.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000557795.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome)
hg19_v2_chr15_+_57540230_57540239	0.00745911	SOX3_SOX2	ENST00000559703.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chrX_-_73513307_73513350	0.00735512	SOX3_SOX2	ENST00000602420.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr21_+_47268058_47268079	0.00733886	SOX3_SOX2	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr7_-_32931387_32931509	0.00732454	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr19_-_41985048_41985051	0.00731679	SOX3_SOX2	ENST00000599801.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000595063.1|AC011526.1|ENSG00000267107.2|AC011526.1	ENST00000598215.1|AC011526.1|ENSG00000267107.2|AC011526.1
hg19_v2_chr9_-_35111420_35111455	0.00728663	SOX3_SOX2	ENST00000378557.1|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr10_-_123687943_123687997	0.00728545	SOX3_SOX2	ENST00000540606.1|ATE1|ENSG00000107669.13|arginyltransferase 1 	ENST00000455628.1|ATE1|ENSG00000107669.13|arginyltransferase 1
hg19_v2_chr1_+_174846570_174846584	0.00728438	SOX3_SOX2	ENST00000392064.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr12_-_99548270_99548295	0.00728058	SOX3_SOX2	ENST00000546568.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000332712.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000546960.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr4_-_113558014_113558073	0.00727215	SOX3_SOX2	ENST00000503172.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000505019.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000309071.5|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr18_+_29078131_29078218	0.00726905	SOX3_SOX2	ENST00000585206.1|DSG2|ENSG00000046604.8|desmoglein 2
hg19_v2_chr3_-_58196688_58196706	0.0072685	SOX3_SOX2	ENST00000486455.1|DNASE1L3|ENSG00000163687.9|deoxyribonuclease I-like 3
hg19_v2_chrX_-_46404811_46404876	0.00724642	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chr7_-_5821314_5821370	0.00724479	SOX3_SOX2	ENST00000425013.2|RNF216|ENSG00000011275.14|ring finger protein 216 	ENST00000389902.3|RNF216|ENSG00000011275.14|ring finger protein 216
hg19_v2_chr14_+_53019993_53020137	0.00721591	SOX3_SOX2	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr15_+_63050785_63050810	0.00719399	SOX3_SOX2	ENST00000472902.1|TLN2|ENSG00000171914.10|talin 2
hg19_v2_chr4_-_113558079_113558145	0.0071886	SOX3_SOX2	ENST00000445203.2|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr6_+_101846664_101846702	0.00715999	SOX3_SOX2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr18_-_28682374_28682415	0.00711213	SOX3_SOX2	ENST00000280904.6|DSC2|ENSG00000134755.10|desmocollin 2
hg19_v2_chr2_-_9771075_9771153	0.00709957	SOX3_SOX2	ENST00000446619.1|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 	ENST00000238081.3|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr2_+_65283506_65283527	0.00704708	SOX3_SOX2	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr12_-_57634475_57634532	0.00703351	SOX3_SOX2	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr22_-_50221160_50221160	0.00699631	SOX3_SOX2	ENST00000404760.1|BRD1|ENSG00000100425.14|bromodomain containing 1
hg19_v2_chr10_+_24755416_24755470	0.00699155	SOX3_SOX2	ENST00000396446.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000396445.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376451.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr3_+_36421826_36421844	0.00695089	SOX3_SOX2	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr9_+_20927764_20927855	0.00695029	SOX3_SOX2	ENST00000603044.1|FOCAD|ENSG00000188352.8|focadhesin 	ENST00000604254.1|FOCAD|ENSG00000188352.8|focadhesin
hg19_v2_chr12_-_99288986_99289078	0.00691017	SOX3_SOX2	ENST00000552407.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000551613.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000548447.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000546364.3|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000552748.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr16_+_10837643_10837714	0.0068736	SOX3_SOX2	ENST00000574334.1|NUBP1|ENSG00000103274.6|nucleotide binding protein 1 	ENST00000283027.5|NUBP1|ENSG00000103274.6|nucleotide binding protein 1 	ENST00000433392.2|NUBP1|ENSG00000103274.6|nucleotide binding protein 1
hg19_v2_chr11_-_18062335_18062335	0.0068678	SOX3_SOX2	ENST00000341556.2|TPH1|ENSG00000129167.5|tryptophan hydroxylase 1
hg19_v2_chr8_-_38386175_38386180	0.00681905	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr1_-_115300579_115300590	0.00681576	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr4_+_144434584_144434709	0.00678584	SOX3_SOX2	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr8_-_93115445_93115462	0.00677759	SOX3_SOX2	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr4_+_57276661_57276682	0.00675988	SOX3_SOX2	ENST00000598320.1|AC068620.1|ENSG00000268171.1|Uncharacterized protein
hg19_v2_chr11_-_71753188_71753200	0.00671694	SOX3_SOX2	ENST00000543009.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr16_-_8962544_8962584	0.00671	SOX3_SOX2	ENST00000570125.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chrX_+_135251783_135251813	0.00669828	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr4_-_186877502_186877563	0.00668666	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr2_+_232573208_232573219	0.00666558	SOX3_SOX2	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chrX_-_71792477_71792720	0.00664904	SOX3_SOX2	ENST00000421523.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000415409.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373559.4|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373556.3|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373560.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373583.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000429103.2|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373571.1|HDAC8|ENSG00000147099.15|histone deacetylase 8 	ENST00000373554.1|HDAC8|ENSG00000147099.15|histone deacetylase 8
hg19_v2_chr4_-_157892167_157892228	0.00663034	SOX3_SOX2	ENST00000541126.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr11_-_94965667_94965705	0.00659126	SOX3_SOX2	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr14_+_105781102_105781230	0.00657802	SOX3_SOX2	ENST00000547217.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr5_-_110062349_110062380	0.00656807	SOX3_SOX2	ENST00000511883.2|TMEM232|ENSG00000186952.10|transmembrane protein 232 	ENST00000455884.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr19_-_38714847_38714890	0.00656026	SOX3_SOX2	ENST00000420980.2|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1 	ENST00000355526.4|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chrX_-_16730688_16730814	0.00654297	SOX3_SOX2	ENST00000359276.4|CTPS2|ENSG00000047230.10|CTP synthase 2
hg19_v2_chr7_-_76829125_76829143	0.00654057	SOX3_SOX2	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr18_+_18822216_18822319	0.00653239	SOX3_SOX2	ENST00000269218.6|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr7_+_148844516_148844577	0.0064932	SOX3_SOX2	ENST00000420008.2|ZNF398|ENSG00000197024.4|zinc finger protein 398 	ENST00000475153.1|ZNF398|ENSG00000197024.4|zinc finger protein 398
hg19_v2_chr3_-_169530574_169530774	0.00648543	SOX3_SOX2	ENST00000316515.7|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522830.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522526.2|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr12_+_101188718_101188745	0.00647598	SOX3_SOX2	ENST00000299222.9|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392977.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr2_+_173955327_173955347	0.00646361	SOX3_SOX2	ENST00000422149.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr5_-_173043591_173043688	0.00646179	SOX3_SOX2	ENST00000285908.5|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1 	ENST00000480951.1|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1 	ENST00000311086.4|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1
hg19_v2_chr5_-_124080203_124080258	0.00643388	SOX3_SOX2	ENST00000504926.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr4_+_128554081_128554121	0.00639339	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr22_+_42372764_42372868	0.00635386	SOX3_SOX2	ENST00000396426.3|SEPT3|ENSG00000100167.15|septin 3 	ENST00000406029.1|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr3_-_160283348_160283376	0.00629884	SOX3_SOX2	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr21_+_30672433_30672464	0.00622142	SOX3_SOX2	ENST00000451655.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr16_+_28722684_28722807	0.00614726	SOX3_SOX2	ENST00000331666.6|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000395587.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000569690.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000564243.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C
hg19_v2_chr19_+_9732156_9732223	0.0061282	SOX3_SOX2	ENST00000586614.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000587536.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000591056.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000592851.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82
hg19_v2_chr5_+_154173697_154173770	0.00612789	SOX3_SOX2	ENST00000518742.1|LARP1|ENSG00000155506.12|La ribonucleoprotein domain family, member 1
hg19_v2_chr17_-_62050278_62050278	0.00612608	SOX3_SOX2	ENST00000578147.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit 	ENST00000435607.1|SCN4A|ENSG00000007314.7|sodium channel, voltage-gated, type IV, alpha subunit
hg19_v2_chr8_+_124864227_124864227	0.00611278	SOX3_SOX2	ENST00000522917.1|FER1L6|ENSG00000214814.2|fer-1-like 6 (C. elegans)
hg19_v2_chr9_-_23825956_23826063	0.00610654	SOX3_SOX2	ENST00000397312.2|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr19_+_10765699_10765728	0.006045	SOX3_SOX2	ENST00000590009.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr16_+_290181_290221	0.00604349	SOX3_SOX2	ENST00000417499.1|ITFG3|ENSG00000167930.11|integrin alpha FG-GAP repeat containing 3
hg19_v2_chr3_+_111260954_111260977	0.00600137	SOX3_SOX2	ENST00000283285.5|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr15_-_70388943_70389220	0.00599158	SOX3_SOX2	ENST00000559048.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000560939.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000440567.3|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000557907.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558379.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000451782.2|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000559929.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr16_-_89007491_89007608	0.00599044	SOX3_SOX2	ENST00000327483.5|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000564416.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr20_-_20693131_20693268	0.00598255	SOX3_SOX2	ENST00000202677.7|RALGAPA2|ENSG00000188559.9|Ral GTPase activating protein, alpha subunit 2 (catalytic)
hg19_v2_chr14_-_21489271_21489284	0.00596204	SOX3_SOX2	ENST00000553593.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr1_-_75100539_75100563	0.00593911	SOX3_SOX2	ENST00000420661.2|C1orf173|ENSG00000178965.9|chromosome 1 open reading frame 173
hg19_v2_chr5_+_157158205_157158205	0.00593323	SOX3_SOX2	ENST00000231198.7|THG1L|ENSG00000113272.9|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
hg19_v2_chr8_-_30585439_30585494	0.00589039	SOX3_SOX2	ENST00000221130.5|GSR|ENSG00000104687.8|glutathione reductase
hg19_v2_chr7_+_12726623_12726750	0.0058779	SOX3_SOX2	ENST00000439721.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr4_+_150999418_150999433	0.00585576	SOX3_SOX2	ENST00000296550.7|DCLK2|ENSG00000170390.10|doublecortin-like kinase 2
hg19_v2_chr1_-_184006829_184006911	0.00585446	SOX3_SOX2	ENST00000361927.4|COLGALT2|ENSG00000198756.6|collagen beta(1-O)galactosyltransferase 2
hg19_v2_chr1_-_24438664_24438671	0.00584503	SOX3_SOX2	ENST00000374434.3|MYOM3|ENSG00000142661.14|myomesin 3 	ENST00000330966.7|MYOM3|ENSG00000142661.14|myomesin 3 	ENST00000329601.7|MYOM3|ENSG00000142661.14|myomesin 3
hg19_v2_chr6_-_146057144_146057164	0.00583536	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chr1_+_26737292_26737322	0.00580192	SOX3_SOX2	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr20_-_14318248_14318264	0.00577868	SOX3_SOX2	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr15_+_92937144_92937295	0.00577157	SOX3_SOX2	ENST00000539113.1|ST8SIA2|ENSG00000140557.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 	ENST00000555434.1|ST8SIA2|ENSG00000140557.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
hg19_v2_chr7_+_117120017_117120087	0.00575948	SOX3_SOX2	ENST00000003084.6|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 	ENST00000454343.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr3_-_93781750_93781831	0.00573981	SOX3_SOX2	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr7_+_86274145_86274166	0.00559543	SOX3_SOX2	ENST00000439827.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3 	ENST00000394720.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3 	ENST00000421579.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr20_-_30458019_30458083	0.00558722	SOX3_SOX2	ENST00000486996.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15 	ENST00000398084.2|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr11_+_64058758_64058797	0.00558072	SOX3_SOX2	ENST00000538767.1|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr4_+_83351791_83351802	0.00554823	SOX3_SOX2	ENST00000509635.1|ENOPH1|ENSG00000145293.10|enolase-phosphatase 1
hg19_v2_chr20_+_58203664_58203713	0.00549908	SOX3_SOX2	ENST00000541461.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr2_-_208031542_208031595	0.00546147	SOX3_SOX2	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr5_+_140571902_140571967	0.0054605	SOX3_SOX2	ENST00000239446.4|PCDHB10|ENSG00000120324.4|protocadherin beta 10
hg19_v2_chr10_+_72972281_72972336	0.00539941	SOX3_SOX2	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr4_-_110624564_110624739	0.00539155	SOX3_SOX2	ENST00000352981.3|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000265164.2|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000505486.1|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase
hg19_v2_chr1_+_156052354_156052380	0.00538647	SOX3_SOX2	ENST00000368301.2|LMNA|ENSG00000160789.15|lamin A/C
hg19_v2_chr3_+_185304059_185304124	0.00538293	SOX3_SOX2	ENST00000427465.2|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr7_-_22233442_22233527	0.00535206	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr2_-_70475586_70475646	0.00526963	SOX3_SOX2	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr14_-_21493123_21493448	0.00525438	SOX3_SOX2	ENST00000556147.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554489.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555657.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557274.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555158.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554833.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555384.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556420.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554893.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000553503.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555733.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000553867.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397856.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397855.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556008.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557182.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554483.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556688.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397853.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556329.2|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554143.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397851.2|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555142.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557676.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556924.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr5_+_177631523_177631572	0.00523825	SOX3_SOX2	ENST00000506339.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000355836.5|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000514633.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000515193.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000506259.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B 	ENST00000504898.1|HNRNPAB|ENSG00000197451.6|heterogeneous nuclear ribonucleoprotein A/B
hg19_v2_chr11_+_19798964_19799013	0.00523699	SOX3_SOX2	ENST00000527559.2|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr9_+_80912059_80912081	0.00520548	SOX3_SOX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chrX_-_13835147_13835224	0.00519228	SOX3_SOX2	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr5_+_156693159_156693213	0.00517205	SOX3_SOX2	ENST00000347377.6|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr3_+_189507432_189507459	0.00516677	SOX3_SOX2	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr8_+_81398444_81398472	0.00516441	SOX3_SOX2	ENST00000455036.3|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10 	ENST00000426744.2|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr20_-_1165319_1165319	0.00514718	SOX3_SOX2	ENST00000429036.1|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr13_-_103053946_103054124	0.00507365	SOX3_SOX2	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr1_+_149239529_149239531	0.00505108	SOX3_SOX2	ENST00000457216.2|RP11-403I13.4|ENSG00000223779.4|RP11-403I13.4
hg19_v2_chr2_-_208890218_208890289	0.00502743	SOX3_SOX2	ENST00000457206.1|PLEKHM3|ENSG00000178385.9|pleckstrin homology domain containing, family M, member 3 	ENST00000427836.2|PLEKHM3|ENSG00000178385.9|pleckstrin homology domain containing, family M, member 3 	ENST00000389247.4|PLEKHM3|ENSG00000178385.9|pleckstrin homology domain containing, family M, member 3
hg19_v2_chr4_-_5990166_5990166	0.00500595	SOX3_SOX2	ENST00000324058.5|C4orf50|ENSG00000181215.8|chromosome 4 open reading frame 50
hg19_v2_chr19_+_38880252_38880252	0.00499599	SOX3_SOX2	ENST00000586301.1|SPRED3|ENSG00000188766.8|sprouty-related, EVH1 domain containing 3
hg19_v2_chr10_-_106240032_106240047	0.00498475	SOX3_SOX2	ENST00000447860.1|RP11-127O4.3|ENSG00000225768.1|RP11-127O4.3
hg19_v2_chr12_-_24103954_24103972	0.00496667	SOX3_SOX2	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr9_+_27109133_27109187	0.00495138	SOX3_SOX2	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr1_-_234667504_234667525	0.00490842	SOX3_SOX2	ENST00000421207.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1	ENST00000435574.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1
hg19_v2_chr3_+_52828805_52828821	0.00483138	SOX3_SOX2	ENST00000416872.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3 	ENST00000449956.2|ITIH3|ENSG00000162267.8|inter-alpha-trypsin inhibitor heavy chain 3
hg19_v2_chr1_-_167883353_167883453	0.00482053	SOX3_SOX2	ENST00000545172.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr6_-_31508304_31508360	0.00481533	SOX3_SOX2	ENST00000376177.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr2_-_207024233_207024327	0.00479128	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr17_+_37618257_37618293	0.00478418	SOX3_SOX2	ENST00000447079.4|CDK12|ENSG00000167258.9|cyclin-dependent kinase 12
hg19_v2_chr7_+_134212312_134212344	0.00477268	SOX3_SOX2	ENST00000359579.4|AKR1B10|ENSG00000198074.5|aldo-keto reductase family 1, member B10 (aldose reductase)
hg19_v2_chr3_+_44626359_44626387	0.00475167	SOX3_SOX2	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr2_+_181845298_181845378	0.00474085	SOX3_SOX2	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr10_+_102505468_102505546	0.00471123	SOX3_SOX2	ENST00000361791.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000355243.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000428433.1|PAX2|ENSG00000075891.17|paired box 2 	ENST00000370296.2|PAX2|ENSG00000075891.17|paired box 2
hg19_v2_chr5_-_33892204_33892297	0.00466201	SOX3_SOX2	ENST00000504830.1|ADAMTS12|ENSG00000151388.6|ADAM metallopeptidase with thrombospondin type 1 motif, 12
hg19_v2_chr17_-_44270133_44270207	0.0046601	SOX3_SOX2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chrX_-_122756660_122756696	0.0046402	SOX3_SOX2	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr11_+_1411503_1411521	0.00463244	SOX3_SOX2	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr5_-_150284532_150284549	0.00458729	SOX3_SOX2	ENST00000394226.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000446148.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000274599.5|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000418587.2|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr12_-_6715808_6715875	0.00456796	SOX3_SOX2	ENST00000545584.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr7_+_107224364_107224391	0.00454545	SOX3_SOX2	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr2_-_20550416_20550463	0.00452694	SOX3_SOX2	ENST00000403432.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2 	ENST00000424110.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr10_-_99030395_99030434	0.00450066	SOX3_SOX2	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr5_+_121465207_121465216	0.0044731	SOX3_SOX2	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr4_+_69917078_69917101	0.00445887	SOX3_SOX2	ENST00000502942.1|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr4_-_25865159_25865382	0.00435471	SOX3_SOX2	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr2_-_235405168_235405277	0.00432998	SOX3_SOX2	ENST00000339728.3|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr1_+_223566715_223566791	0.0042457	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr2_-_128568721_128568766	0.00421915	SOX3_SOX2	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr14_-_50583271_50583318	0.00409567	SOX3_SOX2	ENST00000395860.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase 	ENST00000395859.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase
hg19_v2_chr21_-_40685477_40685496	0.00408923	SOX3_SOX2	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr6_+_130339710_130339745	0.00408869	SOX3_SOX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr8_+_68864330_68864361	0.00407063	SOX3_SOX2	ENST00000288368.4|PREX2|ENSG00000046889.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
hg19_v2_chr5_-_110062384_110062450	0.00406715	SOX3_SOX2	ENST00000429839.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr2_+_228736321_228736332	0.00405786	SOX3_SOX2	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr3_-_112360116_112360153	0.00405066	SOX3_SOX2	ENST00000206423.3|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80 	ENST00000439685.2|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr9_-_116062045_116062045	0.00400936	SOX3_SOX2	ENST00000478815.1|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr1_-_111174054_111174096	0.00398337	SOX3_SOX2	ENST00000369770.3|KCNA2|ENSG00000177301.9|potassium voltage-gated channel, shaker-related subfamily, member 2
hg19_v2_chr11_-_84028180_84028202	0.0039633	SOX3_SOX2	ENST00000280241.8|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr5_+_179921430_179921461	0.00395904	SOX3_SOX2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr14_-_21994337_21994442	0.00394083	SOX3_SOX2	ENST00000537235.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2 	ENST00000450879.2|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr2_+_210517895_210518021	0.00391245	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr7_+_30185406_30185417	0.00389644	SOX3_SOX2	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr13_-_28545276_28545276	0.0038914	SOX3_SOX2	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr13_-_36944307_36944322	0.00385101	SOX3_SOX2	ENST00000355182.4|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chrX_-_63005405_63005440	0.00380811	SOX3_SOX2	ENST00000374878.1|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000437457.2|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v2_chr18_-_64271316_64271334	0.00377792	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr22_-_17602200_17602265	0.00377543	SOX3_SOX2	ENST00000399875.1|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr2_-_107503558_107503580	0.00375087	SOX3_SOX2	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr11_-_10562710_10562782	0.00371248	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr8_+_144718171_144718332	0.00369615	SOX3_SOX2	ENST00000526926.1|ZNF623|ENSG00000183309.7|zinc finger protein 623 	ENST00000458270.2|ZNF623|ENSG00000183309.7|zinc finger protein 623
hg19_v2_chr8_-_18744528_18744585	0.00369485	SOX3_SOX2	ENST00000523619.1|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr19_-_55691377_55691406	0.00368897	SOX3_SOX2	ENST00000589172.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr17_+_64961026_64961026	0.00366994	SOX3_SOX2	ENST00000262138.3|CACNG4|ENSG00000075461.5|calcium channel, voltage-dependent, gamma subunit 4
hg19_v2_chr9_+_18474204_18474231	0.00366984	SOX3_SOX2	ENST00000276935.6|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chr12_+_122326662_122326768	0.00364823	SOX3_SOX2	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr10_+_93683519_93683594	0.00359814	SOX3_SOX2	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr2_+_208394658_208394692	0.00358049	SOX3_SOX2	ENST00000421139.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr3_+_54157480_54157547	0.0035776	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr5_-_111093167_111093252	0.00356569	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr2_-_152955537_152955593	0.00355706	SOX3_SOX2	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr5_-_130868688_130868736	0.0035306	SOX3_SOX2	ENST00000504575.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000513227.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6
hg19_v2_chr4_-_140477928_140477990	0.00351139	SOX3_SOX2	ENST00000274031.3|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7
hg19_v2_chr15_+_78730622_78730646	0.00346383	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr17_-_33760269_33760302	0.00345153	SOX3_SOX2	ENST00000452764.3|SLFN12|ENSG00000172123.8|schlafen family member 12
hg19_v2_chr3_+_14860469_14860469	0.00343458	SOX3_SOX2	ENST00000285046.5|FGD5|ENSG00000154783.6|FYVE, RhoGEF and PH domain containing 5
hg19_v2_chr7_+_12726474_12726542	0.00343389	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr16_+_31724618_31724630	0.00337723	SOX3_SOX2	ENST00000530881.1|ZNF720|ENSG00000197302.6|zinc finger protein 720 	ENST00000529515.1|ZNF720|ENSG00000197302.6|zinc finger protein 720
hg19_v2_chr5_+_147774275_147774340	0.00332799	SOX3_SOX2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr1_-_200379180_200379191	0.0033148	SOX3_SOX2	ENST00000294740.3|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chrX_+_21958814_21958864	0.00329653	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr3_+_189349162_189349305	0.003293	SOX3_SOX2	ENST00000264731.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000382063.4|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000418709.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000320472.5|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392460.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000440651.2|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr12_-_14133053_14133159	0.00329124	SOX3_SOX2	ENST00000609686.1|GRIN2B|ENSG00000273079.1|glutamate receptor, ionotropic, N-methyl D-aspartate 2B
hg19_v2_chr1_-_156722015_156722034	0.00324452	SOX3_SOX2	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr20_+_58179582_58179603	0.00321747	SOX3_SOX2	ENST00000371015.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3 	ENST00000395639.4|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr5_-_168006591_168006638	0.00321351	SOX3_SOX2	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr13_-_45150392_45150472	0.00317564	SOX3_SOX2	ENST00000501704.2|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr2_-_235405679_235405739	0.00317204	SOX3_SOX2	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr14_+_72052983_72053003	0.00313678	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr3_+_57094469_57094469	0.0030869	SOX3_SOX2	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr19_-_20150301_20150321	0.00303836	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr6_-_31619892_31619964	0.00302533	SOX3_SOX2	ENST00000454165.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000428326.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000452994.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr7_+_117120106_117120149	0.0029944	SOX3_SOX2	ENST00000426809.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr9_-_117150303_117150361	0.0029862	SOX3_SOX2	ENST00000312033.3|AKNA|ENSG00000106948.12|AT-hook transcription factor
hg19_v2_chr15_+_93749295_93749295	0.00295343	SOX3_SOX2	ENST00000599897.1|AC112693.2|ENSG00000269360.1|AC112693.2
hg19_v2_chr1_-_17445930_17445954	0.00293291	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr14_+_20248401_20248401	0.00289695	SOX3_SOX2	ENST00000315957.4|OR4M1|ENSG00000176299.4|olfactory receptor, family 4, subfamily M, member 1
hg19_v2_chr2_+_210444142_210444194	0.00289525	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr14_-_94789663_94789731	0.00286324	SOX3_SOX2	ENST00000557225.1|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 	ENST00000341584.3|SERPINA6|ENSG00000170099.5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6
hg19_v2_chr17_+_72581057_72581057	0.00283308	SOX3_SOX2	ENST00000392620.1|C17orf77|ENSG00000182352.4|chromosome 17 open reading frame 77
hg19_v2_chr5_-_83680192_83680209	0.00278449	SOX3_SOX2	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr7_+_105603699_105603732	0.00278262	SOX3_SOX2	ENST00000478080.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr6_+_80341000_80341025	0.00277874	SOX3_SOX2	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chr20_-_50479451_50479469	0.00276649	SOX3_SOX2	ENST00000438154.1|RP5-1112F19.2|ENSG00000227964.1|RP5-1112F19.2
hg19_v2_chr6_+_170190417_170190475	0.00276116	SOX3_SOX2	ENST00000420557.2|LINC00574|ENSG00000231690.2|long intergenic non-protein coding RNA 574
hg19_v2_chr10_+_18689637_18689742	0.00274141	SOX3_SOX2	ENST00000377315.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr10_+_106028923_106028956	0.00272904	SOX3_SOX2	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr6_-_127840453_127840507	0.00270566	SOX3_SOX2	ENST00000556132.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr4_-_125633876_125633897	0.00263857	SOX3_SOX2	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr14_+_24407940_24407940	0.0025793	SOX3_SOX2	ENST00000354854.1|DHRS4-AS1|ENSG00000197775.1|DHRS4-AS1
hg19_v2_chr11_-_126081532_126081587	0.0025743	SOX3_SOX2	ENST00000533628.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000298317.4|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4 	ENST00000532674.1|RPUSD4|ENSG00000165526.4|RNA pseudouridylate synthase domain containing 4
hg19_v2_chr9_-_5830768_5830787	0.00257335	SOX3_SOX2	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chrX_-_134049262_134049297	0.00255346	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr9_+_27109392_27109435	0.00254862	SOX3_SOX2	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr19_+_10765614_10765687	0.00253536	SOX3_SOX2	ENST00000589283.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chrX_+_105937068_105937091	0.00250217	SOX3_SOX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr1_-_173638976_173639007	0.0024957	SOX3_SOX2	ENST00000333279.2|ANKRD45|ENSG00000183831.6|ankyrin repeat domain 45
hg19_v2_chr7_+_86273850_86273914	0.00247151	SOX3_SOX2	ENST00000454217.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr12_+_101188547_101188585	0.00241926	SOX3_SOX2	ENST00000546991.1|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392979.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr14_+_60712463_60712475	0.00237112	SOX3_SOX2	ENST00000325642.3|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A 	ENST00000529574.1|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A
hg19_v2_chr17_+_33914276_33914386	0.00235148	SOX3_SOX2	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr20_+_60718785_60718853	0.00233662	SOX3_SOX2	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr1_-_151431674_151431691	0.00232626	SOX3_SOX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr2_-_70475730_70475798	0.00231137	SOX3_SOX2	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr4_+_15683369_15683390	0.00230754	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr11_-_71752838_71752915	0.00225879	SOX3_SOX2	ENST00000537930.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr1_-_21620877_21620963	0.00223166	SOX3_SOX2	ENST00000527991.1|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr9_-_120177216_120177341	0.00217578	SOX3_SOX2	ENST00000373996.3|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000313400.4|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000361477.3|ASTN2|ENSG00000148219.12|astrotactin 2
hg19_v2_chr14_-_20923195_20923270	0.00207757	SOX3_SOX2	ENST00000206542.4|OSGEP|ENSG00000092094.6|O-sialoglycoprotein endopeptidase
hg19_v2_chr2_-_74780176_74780259	0.00205266	SOX3_SOX2	ENST00000409549.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr11_+_64059464_64059482	0.00202756	SOX3_SOX2	ENST00000394525.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr2_-_160472952_160473080	0.00199869	SOX3_SOX2	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr5_+_138210919_138211157	0.0019639	SOX3_SOX2	ENST00000522013.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000520260.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000523298.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000520865.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519634.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000517533.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000523685.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519768.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000517656.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000521683.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000521640.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519116.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr15_-_70388599_70388776	0.00191644	SOX3_SOX2	ENST00000560996.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 	ENST00000558201.1|TLE3|ENSG00000140332.11|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
hg19_v2_chr16_+_24741013_24741058	0.00190095	SOX3_SOX2	ENST00000315183.7|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A 	ENST00000395799.3|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A
hg19_v2_chr4_+_78078304_78078406	0.00188133	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr2_-_86564696_86564728	0.00186713	SOX3_SOX2	ENST00000437769.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr16_-_25026641_25026698	0.00183106	SOX3_SOX2	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr12_+_49761224_49761259	0.00181977	SOX3_SOX2	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr1_-_167883327_167883352	0.00181855	SOX3_SOX2	ENST00000476818.2|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367851.4|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367848.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr15_-_65579177_65579253	0.00179454	SOX3_SOX2	ENST00000444347.2|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16 	ENST00000261888.6|PARP16|ENSG00000138617.10|poly (ADP-ribose) polymerase family, member 16
hg19_v2_chrX_-_10645773_10645795	0.00177431	SOX3_SOX2	ENST00000453318.2|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr10_+_24497704_24497743	0.00173256	SOX3_SOX2	ENST00000376456.4|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000458595.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr12_-_109915098_109915138	0.00171759	SOX3_SOX2	ENST00000542858.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000542262.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000424763.2|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10
hg19_v2_chr5_-_157002749_157002768	0.00169689	SOX3_SOX2	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr19_+_11071973_11072001	0.00167912	SOX3_SOX2	ENST00000590574.1|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
hg19_v2_chr16_+_14396121_14396145	0.00160694	SOX3_SOX2	ENST00000570945.1|RP11-65J21.3|ENSG00000262454.1|RP11-65J21.3
hg19_v2_chr16_-_18887627_18887627	0.00159325	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr9_-_92051391_92051403	0.00156974	SOX3_SOX2	ENST00000420681.2|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chr10_+_70939983_70940044	0.00155326	SOX3_SOX2	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr14_+_20923350_20923424	0.0015263	SOX3_SOX2	ENST00000555414.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000216714.3|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553681.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557344.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000398030.4|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557181.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000555839.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000553368.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000556054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557054.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557592.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1 	ENST00000557150.1|APEX1|ENSG00000100823.7|APEX nuclease (multifunctional DNA repair enzyme) 1
hg19_v2_chr18_+_9885934_9885943	0.00152444	SOX3_SOX2	ENST00000357775.5|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr12_+_106976678_106976708	0.00147511	SOX3_SOX2	ENST00000392842.1|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr20_-_30458491_30458550	0.00146367	SOX3_SOX2	ENST00000339738.5|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr1_+_109256067_109256067	0.00142449	SOX3_SOX2	ENST00000271311.2|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr13_+_43355683_43355705	0.00142221	SOX3_SOX2	ENST00000537894.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr18_+_11851383_11851399	0.00142044	SOX3_SOX2	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr19_-_16582754_16582797	0.0014096	SOX3_SOX2	ENST00000602151.1|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000597937.1|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000535753.2|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1
hg19_v2_chr3_+_19189946_19190079	0.00140375	SOX3_SOX2	ENST00000328405.2|KCNH8|ENSG00000183960.4|potassium voltage-gated channel, subfamily H (eag-related), member 8
hg19_v2_chr6_-_137366096_137366111	0.00138353	SOX3_SOX2	ENST00000316649.5|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha 	ENST00000367746.3|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr1_-_8877692_8877732	0.00137941	SOX3_SOX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr1_+_26437631_26437665	0.00137088	SOX3_SOX2	ENST00000444713.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr2_-_127977654_127977654	0.0013693	SOX3_SOX2	ENST00000409327.1|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr9_-_14313893_14313984	0.001323	SOX3_SOX2	ENST00000380921.3|NFIB|ENSG00000147862.10|nuclear factor I/B 	ENST00000380959.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr22_-_17602143_17602175	0.00130273	SOX3_SOX2	ENST00000331437.3|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr4_-_28404486_28404533	0.00129739	SOX3_SOX2	ENST00000515720.1|RP11-180C1.1|ENSG00000250038.1|Uncharacterized protein
hg19_v2_chr9_-_36401155_36401219	0.00127455	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr17_-_44270270_44270337	0.00124968	SOX3_SOX2	ENST00000572904.1|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr11_+_125496124_125496344	0.00123157	SOX3_SOX2	ENST00000533778.2|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000534070.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr17_+_27369918_27370010	0.00118393	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chr12_-_122017542_122017578	0.00118159	SOX3_SOX2	ENST00000446152.2|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr2_-_230787879_230787955	0.00114362	SOX3_SOX2	ENST00000435716.1|TRIP12|ENSG00000153827.9|thyroid hormone receptor interactor 12
hg19_v2_chr9_-_98279241_98279339	0.00113172	SOX3_SOX2	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr11_+_61129456_61129527	0.00112762	SOX3_SOX2	ENST00000278826.6|TMEM138|ENSG00000149483.7|transmembrane protein 138
hg19_v2_chr6_-_105307417_105307435	0.00111828	SOX3_SOX2	ENST00000524020.1|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
hg19_v2_chr8_-_27468945_27468948	0.0011131	SOX3_SOX2	ENST00000405140.3|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr7_+_101459263_101459310	0.0011102	SOX3_SOX2	ENST00000292538.4|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000393824.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000547394.2|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000360264.3|CUX1|ENSG00000257923.5|cut-like homeobox 1 	ENST00000425244.2|CUX1|ENSG00000257923.5|cut-like homeobox 1
hg19_v2_chr16_-_48419361_48419408	0.00108314	SOX3_SOX2	ENST00000394725.2|SIAH1|ENSG00000196470.7|siah E3 ubiquitin protein ligase 1
hg19_v2_chr12_-_69080590_69080644	0.00107976	SOX3_SOX2	ENST00000433116.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2	ENST00000500695.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2
hg19_v2_chr17_+_29664830_29664844	0.00107708	SOX3_SOX2	ENST00000444181.2|NF1|ENSG00000196712.12|neurofibromin 1 	ENST00000417592.2|NF1|ENSG00000196712.12|neurofibromin 1
hg19_v2_chr8_-_21669826_21669869	0.00107184	SOX3_SOX2	ENST00000517328.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr16_-_80926457_80926494	0.00100897	SOX3_SOX2	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr2_-_106015491_106015518	0.00100624	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr4_-_54424366_54424394	0.00100209	SOX3_SOX2	ENST00000306888.2|LNX1|ENSG00000072201.9|ligand of numb-protein X 1, E3 ubiquitin protein ligase
hg19_v2_chrX_-_140673133_140673133	0.000980393	SOX3_SOX2	ENST00000370519.3|SPANXA1|ENSG00000198021.5|sperm protein associated with the nucleus, X-linked, family member A1
hg19_v2_chr12_-_49075941_49076001	0.000977184	SOX3_SOX2	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr15_-_74421477_74421619	0.000966412	SOX3_SOX2	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr12_-_99548524_99548550	0.000900844	SOX3_SOX2	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr10_+_135050908_135050908	0.000854682	SOX3_SOX2	ENST00000325980.9|VENTX|ENSG00000151650.7|VENT homeobox
hg19_v2_chr3_-_66024213_66024238	0.000802019	SOX3_SOX2	ENST00000483466.1|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr13_+_98795505_98795522	0.000790439	SOX3_SOX2	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr13_+_113656047_113656068	0.000761515	SOX3_SOX2	ENST00000375597.4|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr1_-_17765044_17765073	0.00072724	SOX3_SOX2	ENST00000375433.3|RCC2|ENSG00000179051.9|regulator of chromosome condensation 2
hg19_v2_chr12_-_56120865_56120912	0.0006624	SOX3_SOX2	ENST00000548898.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000552067.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr19_-_55690758_55690780	0.000642146	SOX3_SOX2	ENST00000590851.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr19_-_51141196_51141302	0.000631241	SOX3_SOX2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr14_-_35182994_35183034	0.000621748	SOX3_SOX2	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr20_-_5485166_5485259	0.000584726	SOX3_SOX2	ENST00000589201.1|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654 	ENST00000379053.4|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654
hg19_v2_chr8_-_27468842_27468878	0.000554855	SOX3_SOX2	ENST00000523500.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr12_+_80750134_80750134	0.000487004	SOX3_SOX2	ENST00000546620.1|OTOGL|ENSG00000165899.6|otogelin-like
hg19_v2_chr7_+_30960915_30961105	0.000482831	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr3_+_186648274_186648301	0.000463103	SOX3_SOX2	ENST00000169298.3|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr2_-_237150258_237150258	0.000449697	SOX3_SOX2	ENST00000330842.6|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18
hg19_v2_chr16_+_70258261_70258261	0.0004433	SOX3_SOX2	ENST00000594734.1|FKSG63|ENSG00000269866.1|FKSG63
hg19_v2_chr6_-_144385698_144385742	0.000434288	SOX3_SOX2	ENST00000444202.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1 	ENST00000437412.1|PLAGL1|ENSG00000118495.14|pleiomorphic adenoma gene-like 1
hg19_v2_chr13_+_43355732_43355757	0.000373199	SOX3_SOX2	ENST00000313851.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr4_+_184365841_184365861	0.000300384	SOX3_SOX2	ENST00000510928.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr8_+_132320792_132320868	0.000283152	SOX3_SOX2	ENST00000519695.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1	ENST00000524275.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1
hg19_v2_chr8_-_42396185_42396197	0.000199563	SOX3_SOX2	ENST00000518717.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr12_+_54348618_54348693	0.000136402	SOX3_SOX2	ENST00000243103.3|HOXC12|ENSG00000123407.3|homeobox C12
hg19_v2_chr15_-_88799384_88799430	0.000127892	SOX3_SOX2	ENST00000540489.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000557856.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000558676.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr19_+_52772821_52772828	0.0001091	SOX3_SOX2	ENST00000439461.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr8_-_95220775_95220820	9.37192e-05	SOX3_SOX2	ENST00000441892.2|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000521491.1|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000027335.3|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine)
hg19_v2_chr7_-_148787768_148787874	7.30818e-05	SOX3_SOX2	ENST00000491431.1|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000451334.3|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000316286.9|ZNF786|ENSG00000197362.9|zinc finger protein 786
hg19_v2_chr12_-_42631529_42631602	3.92595e-05	SOX3_SOX2	ENST00000548917.1|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chr2_+_131513864_131513922	2.21631e-05	SOX3_SOX2	ENST00000458606.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3 	ENST00000423981.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
